<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:44:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332031" ref_strand="+" ref_description="SGN-E332031 [cTOD-16-H24]">
      <seq>caagctaacacaatgcacattatctgggatggttctcataaatggaagggcagaatctatccactcatacaagagaattacaggttttgttgcccaagatgatatagtccacggaaacctcactgtagaagagaaccttcgatttaatgcaagatgcagactagctgcagacttgccaaaggctgataaggttcttgtagtcgagagagttattgaatcattgggtcttcaggcagttagagattcactggttgggactgtagagaagcgtggaatttctggtggccagaggaaacgagtgaacgtggggatggaaatggtcatggaaccttcactgctaatcttggatgaacctacatctggtttagacagctcatcctcaaacttacttcttaaagctcttagacgtgaagctcttgaaggtgtaaacatttgcatggttcttcaccagccaagctataccttgtacaagatgttcgatgacttggtacttctagccaaaggtggtcttgttgcatatcacggccctgtgaagaaagcagaagaatactttgcaaatctgggaatcgcagtaccagatcgtgtaaatcctcctgaccatttcattgacgtccttgagggtatggtcaaaccaggtggaggtgtgaccgtggaacaacttcctgtccgatggatgcttcataatggttaccctgtacccccagatatgatgcaattgtgcgatcagattgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="4492" stop="7945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4792" g_stop="4950" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4951" i_stop="6355" i_length="1405">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.475" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6356" g_stop="6652" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="456" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6653" i_stop="7365" i_length="713">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7366" g_stop="7645" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="736" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E332031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4792" e_stop="4950"/>
          <exon e_start="6356" e_stop="6652"/>
          <exon e_start="7366" e_stop="7645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTAACACAATGCACATTATCTGGGATGGTTCTCATAAATGGAAGGGCAGAATCTATCCACTCATACAAGAGAATTACAGGTTTTGTTGCCCAAGATGATATAGTCCACGGAAACCTCACTGTAGAAGAGAACCTTCGATTTAATGCAAGATGCAGGTATCAGTTAGAATACACACTGCATTATTTTCAAGAAACTGACACTACTGGGAAAATAACATCCAATTTTTCTTCTTTCTAAAGTTCTTTTGTTTGTTGAAATGACATTATTTTGAATTGTTATATCGCCTTCCGTATTTCTTTGAACTTCTAGTTACCAAGTAAGTTTAAAAGATAATTGAAACAATTTTCACGTTTTCCAGAGTTCTGTAAGGATAATTTTTTTTATAAAAAATGGTAGAAGATCTTATCAATTAGTGAAAACTTGTGATGTTTCATTTATTTTTCTTACAATTTATCTTAATTAGGATTTAGTTGCACTTAACTCTTAAGCTATTTGTAAATGTGTATATGTTCTCCAGAAGTGCATAAACTTTGACAACTCTTTTAGTTTTTCACTCATGGTGATTGTGTCCTCTAAGGGTCAATGTCATCTGCATTAGTGCATCTCATCAAGCATTCTACACTTAGCAAGTGTTTATATGGCACTTAATATCTGTAGTTTCTTGTCCTTCAATTTTTTACTATCCGTTGTTTTTTGTACCTCGATTATCGTATTAATTTGTTGTAGTTTCTGCTTTGTTACTTTCTGCTATATTTGCTGTTGTCTGTTATTTCTTGTACTTCTGTTACTTCTTTTCGGGACTGTTTTCCTTGAGCAGAGGGTCTATTGGAACCAACCTCTCTACCGCTGAGGTAGGAGTATGGTCTGCGTACACTCTACGGCTCTACCTAGTGCCAAGTGCCATATCTTTATAATGCTTATAAATTATAAGTGTTCAACTAAGCATATATATTTGCATTTTTTTCTCCCGTTGCGCCTGTTTTCATTAAAGCCCATGTTTTATGCTTTGCGCTAAAAGCCCCCACAGACGTTAGAGCTTTTTTGCACTTTTAGCTCTTGATAACACTGGCTTACCCTCCCCAAACCCCACTTTGTGGGACTACACTGGGTATATGATTGTTGTTTGCCTTGTGTTTTGCAGCAACAACTGGTTTCTTCTCTTTTAAATCTTGTTTTATAAACTGTTATGTAGGGTGTGCTAATCTTAGGTTATACATACTCTATTTGGAATATCCACAAGTTACACGCCCTGAGTTTGTAGTTGAAAATTTGGGCCCTAATGTATAATAAACTTATCTATTCCTAGTTTGACGTGTATAGAAGGTTCAAATCATAAGCTGTTCCTATTGTGGATATGTCACGAAGGCTCTATTAATTATATCGTTCAACATTGTCTTAGTTGAAAATTTTGGCCTTCATGCATTATAGGTTTTGCTCATGCATAAGATGTTGTTCCAAGTTTACATTCATATCAAGTTTGATTAACTTGACATCTAAATGTTCATTCTCATTTTCTTATTGCCATTTTATGTCTTCTGCTGAACCTTCAACATCGTAAAGACTAGCTGCAGACTTGCCAAAGGCTGATAAGGTTCTTGTAGTCGAGAGAGTTATTGAATCATTGGGTCTTCAGGCAGTTAGAGATTCACTGGTTGGGACTGTAGAGAAGCGTGGAATTTCTGGTGGCCAGAGGAAACGAGTGAACGTGGGGATGGAAATGGTCATGGAACCTTCACTGCTAATCTTGGATGAACCTACATCTGGTTTAGACAGCTCATCCTCAAACTTACTTCTTAAAGCTCTTAGACGTGAAGCTCTTGAAGGTGTAAACATTTGCATGGTTCTTCACCAGCCAAGGTATGTGGAGTTTTTTCTCCCCTGTCAACTTCTAGAATTCTGCAGAAACTAGATATCCAATTTAGTAGTTTTATTTATCAAAAAAAAGTTTGACTTTTATATACCTTGCTTATGTTACAAATAGTGGATTAAGGGGTATTTGAAGCCTGTTTACAACTATACAGAGACATATATGTTGGAGATAAATAATTTAACTAAAAGTGTGATCTCTCTAGCAACTTAAGCTTTTAGGTTAGTTGGTTACACACTTCGACTTGGTTCGAGTTAGAATTTCGACGTGCTTGGCTCATGAAAAGGATTCAAGTCTGCACGTGAGGATCGTGTTGGAGATATAATTAATCAAAAGGTGTGCTCTCTTTAACAAATTAGGCTTTTAGATAAGATGGTCACACACTTCAACTGTAAAGAAAACAAAATAATCACCACAGAAATGTAATTTCCCTCTACCTAAATAAGTAGTTCTATTAAAACAGGATATTATAAGTTGAGAAATTTAGATAGTTAGAGATGCTTTTGCTTTTGTGTTTTCCCTTTCTTGCTCTATCAGTTTGTGGTTCCAGTTCACAGAAAAAAAATTGAGCTGGCTCAGTAGGTATGCCTTTTGAAATCATGTGACACTGAGACTATGTTGCAATATAAGGCAGAATTTCGTGCTGATATTTGGCTATATTGTATTGTAAGATGGTAGAATGACTTATCTTTCTTTCCTTCAGCTATACCTTGTACAAGATGTTCGATGACTTGGTACTTCTAGCCAAAGGTGGTCTTGTTGCATATCACGGCCCTGTGAAGAAAGCAGAAGAATACTTTGCAAATCTGGGAATCGCAGTACCAGATCGTGTAAATCCTCCTGACCATTTCATTGACGTCCTTGAGGGTATGGTCAAACCAGGTGGAGGTGTGACCGTGGAACAACTTCCTGTCCGATGGATGCTTCATAATGGTTACCCTGTACCCCCAGATATGATGCAATTGTGCGATCAGATTGCAATG</genome_strand>
        <mrna_strand>CAAGCTAACACAATGCACATTATCTGGGATGGTTCTCATAAATGGAAGGGCAGAATCTATCCACTCATACAAGAGAATTACAGGTTTTGTTGCCCAAGATGATATAGTCCACGGAAACCTCACTGTAGAAGAGAACCTTCGATTTAATGCAAGATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCTGCAGACTTGCCAAAGGCTGATAAGGTTCTTGTAGTCGAGAGAGTTATTGAATCATTGGGTCTTCAGGCAGTTAGAGATTCACTGGTTGGGACTGTAGAGAAGCGTGGAATTTCTGGTGGCCAGAGGAAACGAGTGAACGTGGGGATGGAAATGGTCATGGAACCTTCACTGCTAATCTTGGATGAACCTACATCTGGTTTAGACAGCTCATCCTCAAACTTACTTCTTAAAGCTCTTAGACGTGAAGCTCTTGAAGGTGTAAACATTTGCATGGTTCTTCACCAGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACCTTGTACAAGATGTTCGATGACTTGGTACTTCTAGCCAAAGGTGGTCTTGTTGCATATCACGGCCCTGTGAAGAAAGCAGAAGAATACTTTGCAAATCTGGGAATCGCAGTACCAGATCGTGTAAATCCTCCTGACCATTTCATTGACGTCCTTGAGGGTATGGTCAAACCAGGTGGAGGTGTGACCGTGGAACAACTTCCTGTCCGATGGATGCTTCATAATGGTTACCCTGTACCCCCAGATATGATGCAATTGTGCGATCAGATTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333686" ref_strand="+" ref_description="SGN-E333686 [cTOD-22-C5]">
      <seq>ttttctatttgttaatacacacatagacacatagttgagttaaagtatcactacaattgaatcatgaatcagaattcagcatatagaagtggttttgcttctctaggggtctggtttgatgaatcagaaacccgtgatgatcatgcttctatctctggtgtcttgtgttttgatgagaagagggtattaaagggcatggaaaggaaaggtgctttgtacaatataggttccagtattgcatctaaaagagaaaatgaaattaaccaagatgacctcatggttgcaccagcgagaagggacacgaggctattccttatgggtcgtttggtctgagggataaaaataatagaattggtataannatttggtggtctgtttggnntgtctatttgggtaacttgtcccacgtttataccatagtgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="11779" stop="19023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12079" g_stop="12150" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12151" i_stop="16299" i_length="4149">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16354" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="127" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17579" g_stop="17677" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="226" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17865" g_stop="17908" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="270" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17909" i_stop="18565" i_length="657">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18566" g_stop="18723" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="427" r_length="157" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E333686" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12079" e_stop="12150"/>
          <exon e_start="16300" e_stop="16354"/>
          <exon e_start="17579" e_stop="17677"/>
          <exon e_start="17865" e_stop="17908"/>
          <exon e_start="18566" e_stop="18723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTATTTGTTAATACACACATAGACACATAGTTGAGTTAAAGTATCACTACAATTGAATCATGAATCAGGTTAGTGCTTTTGGTTTACTTTGTCAATTTTTTGTGTTCTTTGATGGAATTTGTGTGTGGCATTGATGAATGGTGAAAAGGGGTTGTGGAAATAGTGATATTTGGTAGTGAAAATGAAGTCTTTATGTTTGTGTGGCAAGTTGCTGGACTTAAAAAGGCTACTTGCATGTTAAATTTCTGCTCAAGTTTTGATTTTAGAGGTGAAGAGCTCAGAAAGTAACCATTTTTATGTTAATTGAATGATGAATCAGGTTAGTGCTTTTGGTTTACTTTGTCAATTTTTGTGTTGTTTGATGGAATTTGTATGTGGCATTGATTAATGGTGAAAAGCGGTTGTGGAAATATTGGAATTTGGTAGTTAAAATGAAGTCTTTATGTTTGTGTGGCAAGTTGCTGGACTTAAAAAGGCCACTTGCATGTTAAATTTCTGCTCAAGTTTTGATTTTTTGGTACCCCTTTTGAGTAATAGAGGTGAAGAGCTCAGAAAGTAACCATTTTTTATGTTAATTGAATGATGAGTCAGGTTATTGTTTTTGGTTTTCTTTGTCAATTTTTGTGTTCTTCGATGGAGTTTGTGTGTGGCATTGATGTAAGGTTAAAAGGGGTTGTGGAAATTGTGGAATTTGGTAGTGAAAATGTAGTCTTTATTTTTGTGTTGCAAGTAGTTGTACTTTAAAGGGTACTTGCATGTTAAATTTATGCTCAATTTATGATCTTGTGGTTCCCCTTTTGAGTAATAGAGGTGAAGAGCTCAGAAAGTAATCATTTTTGTGTTAATTGATTGATGAGGCAGGTTATTGTTTTTGGTTTTCTTTGTCAATTTTTATGTTGTTTGATGGAATTTGTGTATGGTTAAAAGGGGTTGTGGGAATTGTGGTTTGGTAGTAAAGATGTAGTCTTTATTTTTGTGTTGCAAGTTGCTGGACTTAAAGGGTACTTGCATGTTGAATTTCCTCTCAGTTTATGATATTTTGGTACCTCTTTTGAGTGATAGAGGTGAAGTATTAAGAAAGAAACCATCTTTTTAATAATTGAATGAGAGAGAGAGAGAGTTTCACACTCTACATTCTCATTACAGTTGAATGATGAATCAGGCTAGTGTTTTTGATAATCATTGTCAATTTTTATCTTCTTTCTTGTACTGTGATTGTGCCTATGTGGAATTTTTTGCAAGACACTGATGTATGGTTACAAGAAGGGCTTGTGGAATTTGTGTGTGTTCGACGGAAAAAGCAGATTTTGTATGGCAAGTTACTGGACTCGTGCATGTTATAATTGCTGCTCAATATTGGGTCTTTTATAGCCCTTTTCCAAACTTTAGAGTAACAGCAGTGAAGAGATGAACCATCTTTTTATGTATTGAATGACACACACTTCCACTCTACATTCTCACTATAATTGTTTCTCTTTACTGATGAATCAGGTTAGTATGATTGGTTTCTTTGTCAATTTTTATGTTCTTTCTTGTACTATGATTGTGCCTATGTACACTACATTATGTAATCTGTGCGAATGTTGGAAGACGTTAATGTATGGTTTGAACGGATTGAGGGAATTTTTGTGTGTTGGCAGAAAATGTAGCCTTTTTTTCATTTTGCGAGTTACTGGACTCAAAAGGGTTCATGTATGTAGACATTTCTGCTCAATTTCGTTTTTTTGCTAGCCCTTTTTTCTAAATTTAGAGTAAATTGATAGAGATGAAGGAGGAAACCATCTTTTTATTGCTTAGTAGAGTTTTTCAGTTGTATGTGCTTGAAAAAGCATTTGAATATTGGGTATCAATAATTGAATGTTATTTACTGATACATTTTAGAGTTATTTAAGTCTATTGAGTTATTTAATTCTTTATCCCATGAATAACTAAGTGATTAATGGACAATGACACTCGATAAAATAGGATAGAGATCAACTAAGAAGAATACATTGTAGATAAAAAAATAGCACTGAGAAATTCCTTCTTGAAGTGCATTCCTTCCTTGGAATTATGAAGATCTTTTTGTATTTATATGGAAGTCTTAGGCTCCATCCAAAGTACAGGAAATTTAAGGGGTCAAAACGTTTCCTTTTCTGGTGACACTGTTCAACTTGTGTTCCCCTATTTTCCTTTCCAAGACTGACCTTTTAAGTTTCCTTTTTTCACGAATGAAAAAGATTAAGGTTGAAAGCTCCCTTCCAGAGCATTTTCCTTTCTCTGAAGATGCATTGCTCAACTCGTGTTTCCCTATTTTTCCTACATCCCCTATAACTTCCCTATCACCCAAGCAGTGACGTACACAGATTTTTCGTCAGAAGTGTCACTTTTTAACATGAGAAACAGTAAATAAACTAATGTAACACCCTATTATTTTTTTTTGATAACTGAGAAATCCGTCTGTCACCCGCCCTTTCGATCAATCACAGCCTTTTAAACTCGGTGGATAATGGGCCTGCCCCTCTACCCTTCTCCACTTAAATACCAGGTTTCACTTTGCATGGTATGGTGTGGGGCTTGAACGTGCGACCTAAGCCATAAATCCTCCACCTCTTGCCACTCGAGCTAGGCCTTGGGGGCAACTAGTTTAACAACCTATTAAAAAGGAATAGAACACAAATAAAACACAATTCACGTATACTATTGTTTCTTTTCTAAAATAACAAAAAAAAATACTATAAATTTTTCTCGATGAGTTTTCCTTTTCCGAAATGTACTTAAAATCACATCATTAGAAATAATAGTACTAAATATCTTTTTATACAGGGCAGCAAATGATCAGTAAATAATTTATTATTCATTGAATTTCATAAATTGTTCCTTATTGATTTTATTGGTGAGAAAGAACGATAAAGGGAAAAAAACATAAAAAGGACCACAACAAAAGCACAGCTTTACTATAATGAGGCTGTGTATAAAATGTTAATTGAGGCTATGCAGATTCGACCACACAACCTCATTTGTGGAAATGAAACACCAAACCAACAGAGCTACTTGCTACTTTACTCAATATATCCTTTGTGTTATATATATATACATATATATATAATAATTCCAATGAAGCAGTGTCACGTGACACCCCTTCGACCTTACTATATCCACCCCTGCACCCAAGGCAAACAAAAGCAAGGCTGGAAGCTTGTTTTTGGTAGCTCCTTCTGTTGGGCTGAGAAATGGAAACACATACACTTGAAAATGTTGACTATGATTGTACCCAATTAGTGATTGTTTTGGTCTGTGGAGCAGAATGTCTTTGCAATTCGCGAGGGGTAAAAACAATCTTGATAAAGATAATGTTTTCCCATAAGTTTGAAAAGAGTGAAATGCTTAAAATGGTAAAAGGGATGTATAATTTACTTTACCGATTTATCCAAAAAAAACAAATAGACTGCTAATTACATGTAACATTCCTGTCATTCTCATTTTGAAAATGACGTCGCTATTGGCAGGGTTATTAGTGAATCATGGCGATTCTAGATGAATTCTGTCAATGATCTGCAATTTTGAACTCTTTTACGAATTCGATGGTTATTTGGTGCAAACTGCAAAGTCTATTTATTTTTAAAGCTAATTTCTTAAATTTGTTGCACCTGTCTCTAGGATGTTCAACGCTAGCTCAAAGATTTTGGAACTATTGTTCTCGTTAAAGCTTACAAGTTTCTTGAGTGTGTATCTTTCTTGTGTTCAAATTTATTTTTTTAGGACAGTTTTTGAAACATTGGTTTTAAAAAATATTTCACAGTAAGCCCACTTTCCTAAATACTGCCCTTAATGTACGACCTGCCTACACAGTGTCGCTGACACAAATCCTTTCACCGTCGAATACTGTGTATGTTCTGAGAAATAATGGAACAGGAGAGGAGATGGAAATAAATTTTATCTTACACCTAAATGCTTTTACAGGCACATATTAGACATCTATCTAATGTTGGACACAAGTCTGTTAGAATGTTCTGCATTGGTTGAGGGGATGGTTTATTGTCTCCTTGTATGGTCTTAAACAGCCCTCCCTCATGAACTAGCTTTTTGGGTTGAGGTATGAGTTGGTGTCTACTTAAGTGGTTTTTGGGGCGAGTTAGTCCGAGGTTCTTTTTCTTTTTACTTAATCTGCTACATCTATGCATGTATTTACCTTAGTCTGCGAAAGTGTCCTAAAATATTTCCATCTCTGTTTGCAGAATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAGGTACTAACTAGTGCATCAACGATATACTAATTTGCACTGTGGATGCTTTGTGCTGGTGCAAATGTTAATTGTCTCATTGTTTGAGAGTTTCAAACTACTTGTTACTTCACATGAACTAGTATATTCCTTGTTAAGTTGCTTTGTTTTTCCTTTGTCTTGCTTATGTGATTCAGGTTCATTTTCCCATTTATGATTGACGCGGATGCACTTTATAGGCTTTTCTAATTATGTTGTGTTACTAGTTTATTATGATCTAAGGAAGTCATTACCTTGTTCTTTCTTGTTAAATCCAGATGAATATGAAATTTTGGTACATTGATTGTTCTGTTTTGGGATTTAATGGCAGCTGGAGTTATGTCTATTTTGACAGTTACTTAGATTGACCAAGGCGGTAAGTTTTGACACCCGAACCTGCATTGGTGTTCTATAGGCAGTTCAGGTGCCACAGTTTGTGATTCCAAGCTTAACTTATATGCAGAGAGGAATTGCTCAGTTGTAATGGTGTGTAGATGACCCCATAAAATAAAATACTTAAAAAGAGGCTAAATAGAATACCTAGTCAAATATGTTCTGTTTAGCTTTTTGTATGTCTGATGATAGTATCAGCTATCGGGTTCTTTTGGTTTACTTTACTGTGCCCGTAAGTTCCATTTTATGTACCAACAAGGGTTTTGTTGGATTTGTAAGTACTCCTACCAGTGATCTCGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGGGTGCTCTACCCCCCAATGTGGGACTTCCCGGTGCGAATGTGGATTTAGTCGGGATCCAATGTGGGTACCGAACACCGGATGGAAAACCAAAAAAAAAAAGAAGTTTGATTTTATGTAGTGTTATCTTACATATTTTTCCTTTTCTGCAAGTCGCTAGAGGTGAACTTCATTCTTCTAGATGTACATGTATTGTGACTTATACAACAGAAAGCACAATTGGAATTAATTCCTGCAGCATGATTCCAATTCTTATCCGCCATAAAAAGGAAAAAGAATCCAATCCTTGTGCAGAGTGAATATTATGTGCTGAGACCTCAGACCAGCATATCTCATAAAAAAAATCACTCACCATGTTATGATGATTTGTTTTCTTACGTTTTTGTGGTATTGTAATTACTGATTCTTCGCTCATACAAGATGAACCTGTTATTCATTTTTTAGAAGATGATATGATTTTTGGTATATGTTGCTTTTAGAAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAGGTATGTCATCTCATGTTTTTCTGTAATCCTTGGAAAGATGGTCGCTTTGGCGTATAGTATAATATATAATATAACCCTTGGTCTTCTGTTTCAAAAAAGAAAATATAACCCTTGGTCTTTTGACTGTTATAGTTTATCTATAATTATGCTATGATCACTTCTTATAGTTCCTTTTTGTGGTTCTCAGGTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGATGTATGTGAGCTTCTCTTTCGGTTAAATCGCTTTTGTAATATTATGGAAAATCGAGTTACTAATTTCTTGGGCTTTAAGAGATTTGCCTCATCTGTTAACACTTTTATGCCACATGTTTTTTGCTTTTCCTAGTTTTGTTTGGCCCAATCAGGAATTTAGAATTTCGGTCGCAATTGCATATCAAAATAAAAAGCTGTTGTCCCCTATTTTCCTTTTGGAAGAGCCTGTATCTTTTTGTACCTCTGTAAATACCTTATCAAGTTTGTCTCACCTTTCTTTCCTTTATGCATATGAGAAGTTTTTGTCGCCTTTCTTTCCTTTTATGCATATGGAGAAGTTTTGTCACCTTTCTTTCCTTTTGTGCATATCAAGAAGTTTGTGTCGCCTTCTTTCCTTTTATGCATATGAAGAAGTTTGTCTCGTATCTTGTTTAGCATTTACCTTCCCTCTTTTTAGTCTAGATATAAGTCCTGGAAGGAGAGTTGATGGTCTTCCTGAAGGCATGAAACTGTACGGGATATTACCTCTTTTGGATGAAGTAATAAATTTTAGTGATAGTTGGGAAATACCCTATAGAAGTAATATACCATAAGTAAAGAACCTGTAATAACAGACGGTTCCCTACAAATGACACAGATTCATCATCTTTGCTGACAGGACCTCATGGTTGCACCAGCGAGAAGGGACACGAGGCTATTCCTTATGGGTCGTTTGGTCTGAGGGATAAAAATAAATAGAATTGGTATAAAATTTTGGTGTCTTGTTTGG-TTGTCTTATTTGGGTAACTTGTCCCACGTTTATACCATAGTGATGGG</genome_strand>
        <mrna_strand>TTTTCTATTTGTTAATACACACATAGACACATAGTTGAGTTAAAGTATCACTACAATTGAATCATGAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG...........................................................................................................................................................................................GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTCATGGTTGCACCAGCGAGAAGGGACACGAGGCTATTCCTTATGGGTCGTTTGGTCTGAGGGATAAAAAT-AATAGAATTGGTATAANNATTTGGTGGTCTGTTTGGNNTGTC-TATTTGGGTAACTTGTCCCACGTTTATACCATAGTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555418" ref_strand="+" ref_description="SGN-E555418 [cTSC-3-C11]">
      <seq>agtatcactacaattgaatcatgaatcagaattcagcatatagaagtggttttgcttctctaggggtctggtttgatgaatcagaaacccgtgatgatcatgcttctatctctggtgtcttgtgttttgatgagaagagggtattaaagggcatggaaaggaaaggtgctttgtacaatataggttccagtattgcatctaaaagagaaaatgaaattaaccaagatgtccttgatctaaagcgaagtcaatttgaggctggaaaaattcaagcacaaaatgatctttccactccatgtgaagattatctgttagatattgaatttgctgaaagcatcacaaatctggattatggttcaagtagaggattgctggaccctatattagaaagtcagattccattatctagttgtgatggaactgacacctgtggaatgccatactctgcgggattagttgtgcaagaatctcaaagtcagaatgctatgtttggccttaccaattcagagttgcatgacctttctcgtgacaagtgtgaaagtcagatgctagttgagtacaatgctgtgaaattccctactgctttcaatccaggagatatcagcaatgtggatgatgtggcaggcttctttgctgaagctgcagcttctgagaagatgaatgacagcatgattgaccattctgcgctaacatctaacggaatttcttttatgtctactgctacacaaaatgaggggcaagatgtaaactgtgaaagctttgatatgcatgaatcctctgaaataagccctccagtcacttctgaagcaataaacatcgacactcctgtcactcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="11822" stop="20479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12122" g_stop="12150" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12151" i_stop="16299" i_length="4149">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16354" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="84" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17579" g_stop="17677" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="183" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17865" g_stop="17908" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="227" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17909" i_stop="19471" i_length="1563">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19472" g_stop="19559" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="315" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19560" i_stop="19654" i_length="95">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19655" g_stop="20179" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="840" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E555418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12122" e_stop="12150"/>
          <exon e_start="16300" e_stop="16354"/>
          <exon e_start="17579" e_stop="17677"/>
          <exon e_start="17865" e_stop="17908"/>
          <exon e_start="19472" e_stop="19559"/>
          <exon e_start="19655" e_stop="20179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCACTACAATTGAATCATGAATCAGGTTAGTGCTTTTGGTTTACTTTGTCAATTTTTTGTGTTCTTTGATGGAATTTGTGTGTGGCATTGATGAATGGTGAAAAGGGGTTGTGGAAATAGTGATATTTGGTAGTGAAAATGAAGTCTTTATGTTTGTGTGGCAAGTTGCTGGACTTAAAAAGGCTACTTGCATGTTAAATTTCTGCTCAAGTTTTGATTTTAGAGGTGAAGAGCTCAGAAAGTAACCATTTTTATGTTAATTGAATGATGAATCAGGTTAGTGCTTTTGGTTTACTTTGTCAATTTTTGTGTTGTTTGATGGAATTTGTATGTGGCATTGATTAATGGTGAAAAGCGGTTGTGGAAATATTGGAATTTGGTAGTTAAAATGAAGTCTTTATGTTTGTGTGGCAAGTTGCTGGACTTAAAAAGGCCACTTGCATGTTAAATTTCTGCTCAAGTTTTGATTTTTTGGTACCCCTTTTGAGTAATAGAGGTGAAGAGCTCAGAAAGTAACCATTTTTTATGTTAATTGAATGATGAGTCAGGTTATTGTTTTTGGTTTTCTTTGTCAATTTTTGTGTTCTTCGATGGAGTTTGTGTGTGGCATTGATGTAAGGTTAAAAGGGGTTGTGGAAATTGTGGAATTTGGTAGTGAAAATGTAGTCTTTATTTTTGTGTTGCAAGTAGTTGTACTTTAAAGGGTACTTGCATGTTAAATTTATGCTCAATTTATGATCTTGTGGTTCCCCTTTTGAGTAATAGAGGTGAAGAGCTCAGAAAGTAATCATTTTTGTGTTAATTGATTGATGAGGCAGGTTATTGTTTTTGGTTTTCTTTGTCAATTTTTATGTTGTTTGATGGAATTTGTGTATGGTTAAAAGGGGTTGTGGGAATTGTGGTTTGGTAGTAAAGATGTAGTCTTTATTTTTGTGTTGCAAGTTGCTGGACTTAAAGGGTACTTGCATGTTGAATTTCCTCTCAGTTTATGATATTTTGGTACCTCTTTTGAGTGATAGAGGTGAAGTATTAAGAAAGAAACCATCTTTTTAATAATTGAATGAGAGAGAGAGAGAGTTTCACACTCTACATTCTCATTACAGTTGAATGATGAATCAGGCTAGTGTTTTTGATAATCATTGTCAATTTTTATCTTCTTTCTTGTACTGTGATTGTGCCTATGTGGAATTTTTTGCAAGACACTGATGTATGGTTACAAGAAGGGCTTGTGGAATTTGTGTGTGTTCGACGGAAAAAGCAGATTTTGTATGGCAAGTTACTGGACTCGTGCATGTTATAATTGCTGCTCAATATTGGGTCTTTTATAGCCCTTTTCCAAACTTTAGAGTAACAGCAGTGAAGAGATGAACCATCTTTTTATGTATTGAATGACACACACTTCCACTCTACATTCTCACTATAATTGTTTCTCTTTACTGATGAATCAGGTTAGTATGATTGGTTTCTTTGTCAATTTTTATGTTCTTTCTTGTACTATGATTGTGCCTATGTACACTACATTATGTAATCTGTGCGAATGTTGGAAGACGTTAATGTATGGTTTGAACGGATTGAGGGAATTTTTGTGTGTTGGCAGAAAATGTAGCCTTTTTTTCATTTTGCGAGTTACTGGACTCAAAAGGGTTCATGTATGTAGACATTTCTGCTCAATTTCGTTTTTTTGCTAGCCCTTTTTTCTAAATTTAGAGTAAATTGATAGAGATGAAGGAGGAAACCATCTTTTTATTGCTTAGTAGAGTTTTTCAGTTGTATGTGCTTGAAAAAGCATTTGAATATTGGGTATCAATAATTGAATGTTATTTACTGATACATTTTAGAGTTATTTAAGTCTATTGAGTTATTTAATTCTTTATCCCATGAATAACTAAGTGATTAATGGACAATGACACTCGATAAAATAGGATAGAGATCAACTAAGAAGAATACATTGTAGATAAAAAAATAGCACTGAGAAATTCCTTCTTGAAGTGCATTCCTTCCTTGGAATTATGAAGATCTTTTTGTATTTATATGGAAGTCTTAGGCTCCATCCAAAGTACAGGAAATTTAAGGGGTCAAAACGTTTCCTTTTCTGGTGACACTGTTCAACTTGTGTTCCCCTATTTTCCTTTCCAAGACTGACCTTTTAAGTTTCCTTTTTTCACGAATGAAAAAGATTAAGGTTGAAAGCTCCCTTCCAGAGCATTTTCCTTTCTCTGAAGATGCATTGCTCAACTCGTGTTTCCCTATTTTTCCTACATCCCCTATAACTTCCCTATCACCCAAGCAGTGACGTACACAGATTTTTCGTCAGAAGTGTCACTTTTTAACATGAGAAACAGTAAATAAACTAATGTAACACCCTATTATTTTTTTTTGATAACTGAGAAATCCGTCTGTCACCCGCCCTTTCGATCAATCACAGCCTTTTAAACTCGGTGGATAATGGGCCTGCCCCTCTACCCTTCTCCACTTAAATACCAGGTTTCACTTTGCATGGTATGGTGTGGGGCTTGAACGTGCGACCTAAGCCATAAATCCTCCACCTCTTGCCACTCGAGCTAGGCCTTGGGGGCAACTAGTTTAACAACCTATTAAAAAGGAATAGAACACAAATAAAACACAATTCACGTATACTATTGTTTCTTTTCTAAAATAACAAAAAAAAATACTATAAATTTTTCTCGATGAGTTTTCCTTTTCCGAAATGTACTTAAAATCACATCATTAGAAATAATAGTACTAAATATCTTTTTATACAGGGCAGCAAATGATCAGTAAATAATTTATTATTCATTGAATTTCATAAATTGTTCCTTATTGATTTTATTGGTGAGAAAGAACGATAAAGGGAAAAAAACATAAAAAGGACCACAACAAAAGCACAGCTTTACTATAATGAGGCTGTGTATAAAATGTTAATTGAGGCTATGCAGATTCGACCACACAACCTCATTTGTGGAAATGAAACACCAAACCAACAGAGCTACTTGCTACTTTACTCAATATATCCTTTGTGTTATATATATATACATATATATATAATAATTCCAATGAAGCAGTGTCACGTGACACCCCTTCGACCTTACTATATCCACCCCTGCACCCAAGGCAAACAAAAGCAAGGCTGGAAGCTTGTTTTTGGTAGCTCCTTCTGTTGGGCTGAGAAATGGAAACACATACACTTGAAAATGTTGACTATGATTGTACCCAATTAGTGATTGTTTTGGTCTGTGGAGCAGAATGTCTTTGCAATTCGCGAGGGGTAAAAACAATCTTGATAAAGATAATGTTTTCCCATAAGTTTGAAAAGAGTGAAATGCTTAAAATGGTAAAAGGGATGTATAATTTACTTTACCGATTTATCCAAAAAAAACAAATAGACTGCTAATTACATGTAACATTCCTGTCATTCTCATTTTGAAAATGACGTCGCTATTGGCAGGGTTATTAGTGAATCATGGCGATTCTAGATGAATTCTGTCAATGATCTGCAATTTTGAACTCTTTTACGAATTCGATGGTTATTTGGTGCAAACTGCAAAGTCTATTTATTTTTAAAGCTAATTTCTTAAATTTGTTGCACCTGTCTCTAGGATGTTCAACGCTAGCTCAAAGATTTTGGAACTATTGTTCTCGTTAAAGCTTACAAGTTTCTTGAGTGTGTATCTTTCTTGTGTTCAAATTTATTTTTTTAGGACAGTTTTTGAAACATTGGTTTTAAAAAATATTTCACAGTAAGCCCACTTTCCTAAATACTGCCCTTAATGTACGACCTGCCTACACAGTGTCGCTGACACAAATCCTTTCACCGTCGAATACTGTGTATGTTCTGAGAAATAATGGAACAGGAGAGGAGATGGAAATAAATTTTATCTTACACCTAAATGCTTTTACAGGCACATATTAGACATCTATCTAATGTTGGACACAAGTCTGTTAGAATGTTCTGCATTGGTTGAGGGGATGGTTTATTGTCTCCTTGTATGGTCTTAAACAGCCCTCCCTCATGAACTAGCTTTTTGGGTTGAGGTATGAGTTGGTGTCTACTTAAGTGGTTTTTGGGGCGAGTTAGTCCGAGGTTCTTTTTCTTTTTACTTAATCTGCTACATCTATGCATGTATTTACCTTAGTCTGCGAAAGTGTCCTAAAATATTTCCATCTCTGTTTGCAGAATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAGGTACTAACTAGTGCATCAACGATATACTAATTTGCACTGTGGATGCTTTGTGCTGGTGCAAATGTTAATTGTCTCATTGTTTGAGAGTTTCAAACTACTTGTTACTTCACATGAACTAGTATATTCCTTGTTAAGTTGCTTTGTTTTTCCTTTGTCTTGCTTATGTGATTCAGGTTCATTTTCCCATTTATGATTGACGCGGATGCACTTTATAGGCTTTTCTAATTATGTTGTGTTACTAGTTTATTATGATCTAAGGAAGTCATTACCTTGTTCTTTCTTGTTAAATCCAGATGAATATGAAATTTTGGTACATTGATTGTTCTGTTTTGGGATTTAATGGCAGCTGGAGTTATGTCTATTTTGACAGTTACTTAGATTGACCAAGGCGGTAAGTTTTGACACCCGAACCTGCATTGGTGTTCTATAGGCAGTTCAGGTGCCACAGTTTGTGATTCCAAGCTTAACTTATATGCAGAGAGGAATTGCTCAGTTGTAATGGTGTGTAGATGACCCCATAAAATAAAATACTTAAAAAGAGGCTAAATAGAATACCTAGTCAAATATGTTCTGTTTAGCTTTTTGTATGTCTGATGATAGTATCAGCTATCGGGTTCTTTTGGTTTACTTTACTGTGCCCGTAAGTTCCATTTTATGTACCAACAAGGGTTTTGTTGGATTTGTAAGTACTCCTACCAGTGATCTCGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGGGTGCTCTACCCCCCAATGTGGGACTTCCCGGTGCGAATGTGGATTTAGTCGGGATCCAATGTGGGTACCGAACACCGGATGGAAAACCAAAAAAAAAAAGAAGTTTGATTTTATGTAGTGTTATCTTACATATTTTTCCTTTTCTGCAAGTCGCTAGAGGTGAACTTCATTCTTCTAGATGTACATGTATTGTGACTTATACAACAGAAAGCACAATTGGAATTAATTCCTGCAGCATGATTCCAATTCTTATCCGCCATAAAAAGGAAAAAGAATCCAATCCTTGTGCAGAGTGAATATTATGTGCTGAGACCTCAGACCAGCATATCTCATAAAAAAAATCACTCACCATGTTATGATGATTTGTTTTCTTACGTTTTTGTGGTATTGTAATTACTGATTCTTCGCTCATACAAGATGAACCTGTTATTCATTTTTTAGAAGATGATATGATTTTTGGTATATGTTGCTTTTAGAAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAGGTATGTCATCTCATGTTTTTCTGTAATCCTTGGAAAGATGGTCGCTTTGGCGTATAGTATAATATATAATATAACCCTTGGTCTTCTGTTTCAAAAAAGAAAATATAACCCTTGGTCTTTTGACTGTTATAGTTTATCTATAATTATGCTATGATCACTTCTTATAGTTCCTTTTTGTGGTTCTCAGGTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGATGTATGTGAGCTTCTCTTTCGGTTAAATCGCTTTTGTAATATTATGGAAAATCGAGTTACTAATTTCTTGGGCTTTAAGAGATTTGCCTCATCTGTTAACACTTTTATGCCACATGTTTTTTGCTTTTCCTAGTTTTGTTTGGCCCAATCAGGAATTTAGAATTTCGGTCGCAATTGCATATCAAAATAAAAAGCTGTTGTCCCCTATTTTCCTTTTGGAAGAGCCTGTATCTTTTTGTACCTCTGTAAATACCTTATCAAGTTTGTCTCACCTTTCTTTCCTTTATGCATATGAGAAGTTTTTGTCGCCTTTCTTTCCTTTTATGCATATGGAGAAGTTTTGTCACCTTTCTTTCCTTTTGTGCATATCAAGAAGTTTGTGTCGCCTTCTTTCCTTTTATGCATATGAAGAAGTTTGTCTCGTATCTTGTTTAGCATTTACCTTCCCTCTTTTTAGTCTAGATATAAGTCCTGGAAGGAGAGTTGATGGTCTTCCTGAAGGCATGAAACTGTACGGGATATTACCTCTTTTGGATGAAGTAATAAATTTTAGTGATAGTTGGGAAATACCCTATAGAAGTAATATACCATAAGTAAAGAACCTGTAATAACAGACGGTTCCCTACAAATGACACAGATTCATCATCTTTGCTGACAGGACCTCATGGTTGCACCAGCGAGAAGGGACACGAGGCTATTCCTTATGGGTCGTTTGGTCTGAGGGATAAAAATAAATAGAATTGGTATAAAATTTTGGTGTCTTGTTTGGTTGTCTTATTTGGGTAACTTGTCCCACGTTTATACCATAGTGATGGGATAAGTTGTCCAATATACATGGTGGGATAAGGGATAAGTTATCTTAGGATAGCTATACCTAGGACAATTGATTTTGGATTAACTTGTTCCCAACCAGACTACCCTAAGTGTATAAAAGTACTCTACCCTTTAAAAGCGCTTCTATTTTTCCCTCTCGCTCCACACATGACACAACCCATATACGCGCGAGTGGGGCAACCTTCGCGCCTTATGTCTCCTCATTTGCTTCCCACAGCACCAGCTGAACTTCATCTTCCATTGTAGCTTACAAAAAGAAACACATCTTTGTCTAATTGAAAGAAGTATGATAACTTGATAATATAAACAAGTATAGTCTAATGAATGAATATCCTCGTTCAGCTAAAGGAATATATTGATTGAAATGTTAGAGTATTAGGGAGTGTCAGTAGTCTTGACTATCAATTTGAGATGGTATGGCTCTTTTTTTTCCCCTAGGAGATTAAACACAGCTCCACCAGCATGCTTCAGTTAGACATCAAGGATTTTTTTCTTCAAAGTTGAAATTGCTTTGACATTATGATGTATAACGAAGTTGTTTCGCAGGTCTTGAGTAGATTTCTTTTTCTTTTGTCGTTGGAATCCGCAAGTTGTTTCCTATTGCTCTCTGACTCTCTTGGTTGTGGGAGTTCCTTTCCTTCGCATGTTGTCTGTTTCGAGTTTTTTTCCCCTTCAATCATTACTATCTTGAGATTTTTGTCTTTGCTGAATTACCTGGTAACTGTGCCAGGTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAGGTAACAGTTCTCGTAAGTTATGCTGCTTTTATTTTTACAAAAAAATATTGTATATCAAGTACAGCTACAATTCTTTCTGGTCTTCTGGGAAACAGATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCAGCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTACTGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCTGAAATAAGCCCTCCAGTCACTTCTGAAGCAATAAACATCGACACTCCTGTCACTCAAAAGC</genome_strand>
        <mrna_strand>AGTATCACTACAATTGAATCATGAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG...........................................................................................................................................................................................GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAG...............................................................................................ATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCAGCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTACTGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCTGAAATAAGCCCTCCAGTCACTTCTGAAGCAATAAACATCGACACTCCTGTCACTCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331046" ref_strand="+" ref_description="SGN-E331046 [cTOD-6-O3]">
      <seq>tacaattgaatcatgaatcagaattcagcatatagaagtggttttgcttctctaggggtctggtttgatgaatcagaaacccgtgatgatcatgcttctatctctggtgtcttgtgttttgatgagaagagggtattaaagggcatggaaaggaaaggtgctttgtacaatataggttccagtattgcatctaaaagagaaaatgaaattaaccaagatgtccttgatctaaagcgaagtcaatttgaggctggaaaaattcaagcacaaaatgatctttccactccatgtgaagattatctgttagatattgaatttgctgaaagcatcacaaatctggattatggttcaagtagaggattgctggaccctatattagaaagtcagattccattatctagttgtgatggaactgacacctgtggaatgccatactctgcgggattagttgtgcaagaatctcaaagtcagaatgctatgtttggccttaccaattcagagttgcatgacctttctcgtgacaagtgtgaaagtcagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="11830" stop="20188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16004" g_stop="16024" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16025" i_stop="16299" i_length="275">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16354" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="76" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17579" g_stop="17677" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="175" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17865" g_stop="17908" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="219" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17909" i_stop="19471" i_length="1563">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19472" g_stop="19559" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="307" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19560" i_stop="19654" i_length="95">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19655" g_stop="19888" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="541" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E331046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16004" e_stop="16024"/>
          <exon e_start="16300" e_stop="16354"/>
          <exon e_start="17579" e_stop="17677"/>
          <exon e_start="17865" e_stop="17908"/>
          <exon e_start="19472" e_stop="19559"/>
          <exon e_start="19655" e_stop="19888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTAAATGCTTTTACAGGCACATATTAGACATCTATCTAATGTTGGACACAAGTCTGTTAGAATGTTCTGCATTGGTTGAGGGGATGGTTTATTGTCTCCTTGTATGGTCTTAAACAGCCCTCCCTCATGAACTAGCTTTTTGGGTTGAGGTATGAGTTGGTGTCTACTTAAGTGGTTTTTGGGGCGAGTTAGTCCGAGGTTCTTTTTCTTTTTACTTAATCTGCTACATCTATGCATGTATTTACCTTAGTCTGCGAAAGTGTCCTAAAATATTTCCATCTCTGTTTGCAGAATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAGGTACTAACTAGTGCATCAACGATATACTAATTTGCACTGTGGATGCTTTGTGCTGGTGCAAATGTTAATTGTCTCATTGTTTGAGAGTTTCAAACTACTTGTTACTTCACATGAACTAGTATATTCCTTGTTAAGTTGCTTTGTTTTTCCTTTGTCTTGCTTATGTGATTCAGGTTCATTTTCCCATTTATGATTGACGCGGATGCACTTTATAGGCTTTTCTAATTATGTTGTGTTACTAGTTTATTATGATCTAAGGAAGTCATTACCTTGTTCTTTCTTGTTAAATCCAGATGAATATGAAATTTTGGTACATTGATTGTTCTGTTTTGGGATTTAATGGCAGCTGGAGTTATGTCTATTTTGACAGTTACTTAGATTGACCAAGGCGGTAAGTTTTGACACCCGAACCTGCATTGGTGTTCTATAGGCAGTTCAGGTGCCACAGTTTGTGATTCCAAGCTTAACTTATATGCAGAGAGGAATTGCTCAGTTGTAATGGTGTGTAGATGACCCCATAAAATAAAATACTTAAAAAGAGGCTAAATAGAATACCTAGTCAAATATGTTCTGTTTAGCTTTTTGTATGTCTGATGATAGTATCAGCTATCGGGTTCTTTTGGTTTACTTTACTGTGCCCGTAAGTTCCATTTTATGTACCAACAAGGGTTTTGTTGGATTTGTAAGTACTCCTACCAGTGATCTCGGGTTCGAGTCCCCTTGGGTACGGAGTCGCCTTTGTTAGGGGGTGCTCTACCCCCCAATGTGGGACTTCCCGGTGCGAATGTGGATTTAGTCGGGATCCAATGTGGGTACCGAACACCGGATGGAAAACCAAAAAAAAAAAGAAGTTTGATTTTATGTAGTGTTATCTTACATATTTTTCCTTTTCTGCAAGTCGCTAGAGGTGAACTTCATTCTTCTAGATGTACATGTATTGTGACTTATACAACAGAAAGCACAATTGGAATTAATTCCTGCAGCATGATTCCAATTCTTATCCGCCATAAAAAGGAAAAAGAATCCAATCCTTGTGCAGAGTGAATATTATGTGCTGAGACCTCAGACCAGCATATCTCATAAAAAAAATCACTCACCATGTTATGATGATTTGTTTTCTTACGTTTTTGTGGTATTGTAATTACTGATTCTTCGCTCATACAAGATGAACCTGTTATTCATTTTTTAGAAGATGATATGATTTTTGGTATATGTTGCTTTTAGAAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAGGTATGTCATCTCATGTTTTTCTGTAATCCTTGGAAAGATGGTCGCTTTGGCGTATAGTATAATATATAATATAACCCTTGGTCTTCTGTTTCAAAAAAGAAAATATAACCCTTGGTCTTTTGACTGTTATAGTTTATCTATAATTATGCTATGATCACTTCTTATAGTTCCTTTTTGTGGTTCTCAGGTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGATGTATGTGAGCTTCTCTTTCGGTTAAATCGCTTTTGTAATATTATGGAAAATCGAGTTACTAATTTCTTGGGCTTTAAGAGATTTGCCTCATCTGTTAACACTTTTATGCCACATGTTTTTTGCTTTTCCTAGTTTTGTTTGGCCCAATCAGGAATTTAGAATTTCGGTCGCAATTGCATATCAAAATAAAAAGCTGTTGTCCCCTATTTTCCTTTTGGAAGAGCCTGTATCTTTTTGTACCTCTGTAAATACCTTATCAAGTTTGTCTCACCTTTCTTTCCTTTATGCATATGAGAAGTTTTTGTCGCCTTTCTTTCCTTTTATGCATATGGAGAAGTTTTGTCACCTTTCTTTCCTTTTGTGCATATCAAGAAGTTTGTGTCGCCTTCTTTCCTTTTATGCATATGAAGAAGTTTGTCTCGTATCTTGTTTAGCATTTACCTTCCCTCTTTTTAGTCTAGATATAAGTCCTGGAAGGAGAGTTGATGGTCTTCCTGAAGGCATGAAACTGTACGGGATATTACCTCTTTTGGATGAAGTAATAAATTTTAGTGATAGTTGGGAAATACCCTATAGAAGTAATATACCATAAGTAAAGAACCTGTAATAACAGACGGTTCCCTACAAATGACACAGATTCATCATCTTTGCTGACAGGACCTCATGGTTGCACCAGCGAGAAGGGACACGAGGCTATTCCTTATGGGTCGTTTGGTCTGAGGGATAAAAATAAATAGAATTGGTATAAAATTTTGGTGTCTTGTTTGGTTGTCTTATTTGGGTAACTTGTCCCACGTTTATACCATAGTGATGGGATAAGTTGTCCAATATACATGGTGGGATAAGGGATAAGTTATCTTAGGATAGCTATACCTAGGACAATTGATTTTGGATTAACTTGTTCCCAACCAGACTACCCTAAGTGTATAAAAGTACTCTACCCTTTAAAAGCGCTTCTATTTTTCCCTCTCGCTCCACACATGACACAACCCATATACGCGCGAGTGGGGCAACCTTCGCGCCTTATGTCTCCTCATTTGCTTCCCACAGCACCAGCTGAACTTCATCTTCCATTGTAGCTTACAAAAAGAAACACATCTTTGTCTAATTGAAAGAAGTATGATAACTTGATAATATAAACAAGTATAGTCTAATGAATGAATATCCTCGTTCAGCTAAAGGAATATATTGATTGAAATGTTAGAGTATTAGGGAGTGTCAGTAGTCTTGACTATCAATTTGAGATGGTATGGCTCTTTTTTTTCCCCTAGGAGATTAAACACAGCTCCACCAGCATGCTTCAGTTAGACATCAAGGATTTTTTTCTTCAAAGTTGAAATTGCTTTGACATTATGATGTATAACGAAGTTGTTTCGCAGGTCTTGAGTAGATTTCTTTTTCTTTTGTCGTTGGAATCCGCAAGTTGTTTCCTATTGCTCTCTGACTCTCTTGGTTGTGGGAGTTCCTTTCCTTCGCATGTTGTCTGTTTCGAGTTTTTTTCCCCTTCAATCATTACTATCTTGAGATTTTTGTCTTTGCTGAATTACCTGGTAACTGTGCCAGGTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAGGTAACAGTTCTCGTAAGTTATGCTGCTTTTATTTTTACAAAAAAATATTGTATATCAAGTACAGCTACAATTCTTTCTGGTCTTCTGGGAAACAGATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGC</genome_strand>
        <mrna_strand>TACAATTGAATCATGAATCAG...................................................................................................................................................................................................................................................................................AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG...........................................................................................................................................................................................GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAG...............................................................................................ATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589125" ref_strand="+" ref_description="SGN-E589125 [42693]">
      <seq>attcagagttgcatgacctttctcgtgacaaatgtgaaagtcagatgctagttgagtacaatgctgtgaaattccctactgctttcaatccaggagatatcagcaatgtggatgatgtggcaggcttctttgctgaagctgcatcttctgagaagatgaatgacagcatgattgaccattctgcgctaacatctaacggaatttcttttatgtctaatgctacacaaaatgaggggcaagatgtaaactgtgaaagctttgatatgcatgaatcctccgtagtaagccctccagtcacttctgaagcaataaacactgacactcctgtcactcaaaagcgtctgcgcaagcctacacgaaggtatattgatgaatcctcagatcttaatgctaaacgtcttaagaaaagagtagaggtttctactaatgcaccagaatcaaagaataagcttctcaaagtcagatgtcagaagaaacctcgtgcagaatctatggaaatggtattgttttctgaagagtcttcttataaagctattcaagtgccttttgcctctcttgtgaacgaagaatgtgatgattgggatgcatctaatgcgacacaggttttcaaacctcacaaggaggagcctcataaggaggctactacacttgtgaattataaagatgatgttgttgcaccaaagaagttggatcaagatggtgtgcggaggaaacatcacaggctctggactgtttcagaggtcagaaagttgattgatggagttgcccaatatggagttggaagatggagtcatataaagaagctttatttctcatcatctgttcatagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="19541" stop="21581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19841" g_stop="20442" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20443" i_stop="21048" i_length="606">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.880" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21049" g_stop="21281" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="832" r_length="230" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E589125" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19841" e_stop="20442"/>
          <exon e_start="21049" e_stop="21281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCAGCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTACTGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCTGAAATAAGCCCTCCAGTCACTTCTGAAGCAATAAACATCGACACTCCTGTCACTCAAAAGCGTCTGCGTAAGCCTACACGAAGGTATATTGATGAATCGTCAAACCTTAATGCTAAGCGTCGCAAGAAAAGAGCAGAGGTTTCTACTAGTGGTGCAGAATCAAAGAATAAGCTTCTCAAAGTCAGATGTCAGAAGAAACCTCGTGCAGAGTCTATGGAAATGGTATTGTTTTCTGAAGAGTCTTCTTACGAAGCTATTCAAGTGCCTTTTGCCTCTCTCGTGAACGAAGAATGTGATGATTGGGATGCATCTGATGCGATACAGGTACACTCCAAAATAAATTTGAAACAAAATTTATAATTTCATTTATGTGATCCTTGCACTGCATCCATGTATGAGCACATTGAAGGTGTTCTTAGTAGGCTAGTTTTATAATCTCGGTTGTGCAAGTCGGTTCACAAATAACATTTAACCAACCAATCTTTGTTGACAACTTGTTCAAAACTCAAAATGAATGAGAGTCTCTGTAATACTATGCTTGCTTGAACTTTTTTTTTGGACGACAAGGGAAACCCGCAGCCGCTACCCTTTATGGGTGCACACAGGTAAAACCCTGCTCCTATGCAATAGCTCGCAAACCTCATAGGAGAGATAACCCGCACTAGGCAAGCCTAGTGCGACGAGCTCGAACCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACGTGGAAGTCCCAAGGTGGTAAGTTCAGGTACTTTTTGAAACAAGGGTGATCTTCCATGCCAATTTGTTATTGAGCATATCACGATACTCTACATACCTACCCCCGATCTTTTTGCAACTTTTTAGTAACGTTTTAATCTTCAGTTAGTATTTTCCTTAACATAAAAGTTGATCTCCTTGAAGGTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAAC</genome_strand>
        <mrna_strand>ATTCAGAGTTGCATGACCTTTCTCGTGACAAATGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCATCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTAATGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCCGTAGTAAGCCCTCCAGTCACTTCTGAAGCAATAAACACTGACACTCCTGTCACTCAAAAGCGTCTGCGCAAGCCTACACGAAGGTATATTGATGAATCCTCAGATCTTAATGCTAAACGTCTTAAGAAAAGAGTAGAGGTTTCTACTAATGCACCAGAATCAAAGAATAAGCTTCTCAAAGTCAGATGTCAGAAGAAACCTCGTGCAGAATCTATGGAAATGGTATTGTTTTCTGAAGAGTCTTCTTATAAAGCTATTCAAGTGCCTTTTGCCTCTCTTGTGAACGAAGAATGTGATGATTGGGATGCATCTAATGCGACACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAAACCTCACAAGGAGGAG---CCTCATAAGGAGGCTACTACACTTGTGAATTATAAAGATGATGTTGTTGCACCAAAGAAGTTGGATCAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTCAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCATATAAAGAAGCTTTATTTCTCATCATCTGTTCATAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242784" ref_strand="+" ref_description="SGN-E242784 [cLED-31-D7]">
      <seq>atgcatctgatgcgatacttgttttcaaacctcacaaggaggagcctcctcataaggaggctactacagttgtgaatcataaagatgatgatgttacaccaaagaagttggtacaagatggtgtgcggaggaaacatcacaggctctggactgtttcagaggttagaaagttgattgatggagttgcccaatatggagttggaagatggagtcacataaagaagctctatttctcatcatctgttcatagaacacctgtggatctcaaggataaatggaggaatcttcttaaagcaacttatctacagaaacaaagcaaatcaacggaaaagggtaaacataacctgtcttggcgacctttgccaaagtctgtcctgcatcgagtcagtgaactggcgaacatgcatccatatccaagaaaccggaggtgcaagagttcccgttctccatgtgcctcatcttctcctgagcattctaacagttctaacaccccgtgacgaccccacctgtgatattcctctcctatgcatagttacaggagtaacatctggtaataacccgatttttacgttcaaatattggcttttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="20123" stop="22818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20423" g_stop="20442" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20443" i_stop="21048" i_length="606">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21049" g_stop="21297" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="269" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21298" i_stop="21419" i_length="122">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21420" g_stop="21476" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="326" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21477" i_stop="22254" i_length="778">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22255" g_stop="22518" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="590" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E242784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20423" e_stop="20442"/>
          <exon e_start="21049" e_stop="21297"/>
          <exon e_start="21420" e_stop="21476"/>
          <exon e_start="22255" e_stop="22518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATCTGATGCGATACAGGTACACTCCAAAATAAATTTGAAACAAAATTTATAATTTCATTTATGTGATCCTTGCACTGCATCCATGTATGAGCACATTGAAGGTGTTCTTAGTAGGCTAGTTTTATAATCTCGGTTGTGCAAGTCGGTTCACAAATAACATTTAACCAACCAATCTTTGTTGACAACTTGTTCAAAACTCAAAATGAATGAGAGTCTCTGTAATACTATGCTTGCTTGAACTTTTTTTTTGGACGACAAGGGAAACCCGCAGCCGCTACCCTTTATGGGTGCACACAGGTAAAACCCTGCTCCTATGCAATAGCTCGCAAACCTCATAGGAGAGATAACCCGCACTAGGCAAGCCTAGTGCGACGAGCTCGAACCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACGTGGAAGTCCCAAGGTGGTAAGTTCAGGTACTTTTTGAAACAAGGGTGATCTTCCATGCCAATTTGTTATTGAGCATATCACGATACTCTACATACCTACCCCCGATCTTTTTGCAACTTTTTAGTAACGTTTTAATCTTCAGTTAGTATTTTCCTTAACATAAAAGTTGATCTCCTTGAAGGTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAGGTAAGCACAATGGCCACTATCAGGCATTCTTCAACCAGACGAGTCAAGAAACACCATGCATCATCTAGTGTTTGCATGCTACTTACCTAAAGTCGGCACTCTGTTGCTCATACGTCTTGCAGGATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACGGTGAGTATTTATTTGAATTTGATTAATAATGCTTGATGTTTGCTGTGAATCATCAATTATGAGCCTTTTAAACTTGATGCAATAGTTTCTTGCTGTTCTGTTATAGAATTACTTTGTATGTATAGCCATCATACATTCTGCGGACATGACCCTAGATAAGAAGTTTTGGAGGCTGATGAGATTAGGGTAGAAGAGTAATAGGTAGCAACGTGTTGTAGCACTTTTCTGGGGGAGAAGCAGGGAACTGGTCTCTTTTTCTCATCTTTTAGTATTCTTATCTGGTATGCACATAGTATCTTATTTTTCAGTTTTACTACTACAGCTTACTTCAATTACAGATTACCCTCCCCGGACCCTCCACTTGTGGGATTACATAGGGTATGTTGTTGTATAGCCATCATATTTTTATTTGTTTTGAAATTTTTTTGTTTGTGTTTGTGCGCACTAGAGTCAATAGTAATACTAAATTATGTTGGTGAAATCAGATTGTTGTATAGTGGAGTGTAATTTGAGTATAATTTCTGCTCAACTTATTTATTCATGTTTCGTTGCATTTTCGGTTTCAAGTAGCATGAGTCGATCTCGTCAAAGTTAGTAGGAAGCTTAACACACAAGAATCTATAATATATGCTGGTTTTGGTATATGTTGTTTAGTCTAGCCACTTCGTTTGATGGATAATATAGCAACATGGAGTGCTTGACATTGTTCAAACTTCTCCCTTATTCCAGAGAGCTTACTTTTCTCATATGATATTTGACCCGATTATCATTGATGCAGGAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGC</genome_strand>
        <mrna_strand>ATGCATCTGATGCGATACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG..........................................................................................................................GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553791" ref_strand="-" ref_description="SGN-E553791 [cTSC-2-D7]">
      <seq>aaggaggagcctcctcataaggaggctactacagttgtgaatcataaagatgatgatgttacaccaaagaagttggtacaagatggtgtgcggaggaaacatcacaggctctggactgtttcagaggttagaaagttgattgatggagttgcccaatatggagttggaagatggagtcacataaagaagctctatttctcatcatctgttcatagaacacctgtggatctcaaggataaatggaggaatcttcttaaagcaacttatctacagaaacaaagcaaatcaacggaaaagggtaaacataacctgtcttggcgacctttgccaaagtctgtcctgcatcgagtcagtgaactggcgaacatgcatccatatccaagaaaccggaggtgcaagagttcccgttctccatgtgcctcatcttctcctgagcattctaacagttctaacaccccgtgacgaccccacctgtgatattcctctcctatgcatagttacaggagtaacatctggtaataacccgatttttacgttcaaatattggcttttagctctcttataccaactcgctgcatagttcgtgtatagagcagcttcatttcaagtgaaaagaaggttctgtataatttttcgttacctctagaaatgcaatcgtcacatctgtaaacttttttttttgtatttccaattgatacaagtgcttatgtttcagcattttgtgtatatgaagtagtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="20764" stop="23005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21064" g_stop="21297" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21298" i_stop="21419" i_length="122">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21420" g_stop="21476" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="291" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21477" i_stop="22254" i_length="778">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22255" g_stop="22705" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="742" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E553791" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553791" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21064" e_stop="21297"/>
          <exon e_start="21420" e_stop="21476"/>
          <exon e_start="22255" e_stop="22705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAGGTAAGCACAATGGCCACTATCAGGCATTCTTCAACCAGACGAGTCAAGAAACACCATGCATCATCTAGTGTTTGCATGCTACTTACCTAAAGTCGGCACTCTGTTGCTCATACGTCTTGCAGGATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACGGTGAGTATTTATTTGAATTTGATTAATAATGCTTGATGTTTGCTGTGAATCATCAATTATGAGCCTTTTAAACTTGATGCAATAGTTTCTTGCTGTTCTGTTATAGAATTACTTTGTATGTATAGCCATCATACATTCTGCGGACATGACCCTAGATAAGAAGTTTTGGAGGCTGATGAGATTAGGGTAGAAGAGTAATAGGTAGCAACGTGTTGTAGCACTTTTCTGGGGGAGAAGCAGGGAACTGGTCTCTTTTTCTCATCTTTTAGTATTCTTATCTGGTATGCACATAGTATCTTATTTTTCAGTTTTACTACTACAGCTTACTTCAATTACAGATTACCCTCCCCGGACCCTCCACTTGTGGGATTACATAGGGTATGTTGTTGTATAGCCATCATATTTTTATTTGTTTTGAAATTTTTTTGTTTGTGTTTGTGCGCACTAGAGTCAATAGTAATACTAAATTATGTTGGTGAAATCAGATTGTTGTATAGTGGAGTGTAATTTGAGTATAATTTCTGCTCAACTTATTTATTCATGTTTCGTTGCATTTTCGGTTTCAAGTAGCATGAGTCGATCTCGTCAAAGTTAGTAGGAAGCTTAACACACAAGAATCTATAATATATGCTGGTTTTGGTATATGTTGTTTAGTCTAGCCACTTCGTTTGATGGATAATATAGCAACATGGAGTGCTTGACATTGTTCAAACTTCTCCCTTATTCCAGAGAGCTTACTTTTCTCATATGATATTTGACCCGATTATCATTGATGCAGGAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTG</genome_strand>
        <mrna_strand>AAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG..........................................................................................................................GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349206" ref_strand="+" ref_description="SGN-E349206 [cTOS-2-K24]">
      <seq>ttcatagaacacctgtggatctcaaggataaatggaggaatcttcttaaagcaacttatctacagaaacaaagcaaatcaacggaaaagggtaaacataacctgtcttggcgacctttgccaaagtctgtcctgcatcgagtcagtgaactggcgaacatgcatccatatccaagaaaccggaggtgcaagagttcccgttctccatgtgcctcatcttctcctgagcattctaacagttctaacaccccgtgacgaccccacctgtgatattcctctcctatgcatagttacaggagtaacatctggtaataacccgatttttacgttcaaatattggcttttagctctcttataccaactcgctgcatagttcgtgtatagagcagcttcatttcaagtgaaaagaaggttctgtataatttttcgttacctctagaaatgcaatcgtcacatctgtaaactttttttttgtatttccaattgatacaagtgcttatgtttcagcattttgtgtatatgaagtagtttgtgaaaaannnaannnnnnnnnnnnnnnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="20972" stop="23006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21272" g_stop="21297" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21298" i_stop="21419" i_length="122">
            <donor d_prob="0.835" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21420" g_stop="21476" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="83" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21477" i_stop="22254" i_length="778">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22255" g_stop="22707" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="535" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="575"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E349206" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21272" e_stop="21297"/>
          <exon e_start="21420" e_stop="21476"/>
          <exon e_start="22255" e_stop="22707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGAACACCTGTGGATCTCAAGGTAAGCACAATGGCCACTATCAGGCATTCTTCAACCAGACGAGTCAAGAAACACCATGCATCATCTAGTGTTTGCATGCTACTTACCTAAAGTCGGCACTCTGTTGCTCATACGTCTTGCAGGATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACGGTGAGTATTTATTTGAATTTGATTAATAATGCTTGATGTTTGCTGTGAATCATCAATTATGAGCCTTTTAAACTTGATGCAATAGTTTCTTGCTGTTCTGTTATAGAATTACTTTGTATGTATAGCCATCATACATTCTGCGGACATGACCCTAGATAAGAAGTTTTGGAGGCTGATGAGATTAGGGTAGAAGAGTAATAGGTAGCAACGTGTTGTAGCACTTTTCTGGGGGAGAAGCAGGGAACTGGTCTCTTTTTCTCATCTTTTAGTATTCTTATCTGGTATGCACATAGTATCTTATTTTTCAGTTTTACTACTACAGCTTACTTCAATTACAGATTACCCTCCCCGGACCCTCCACTTGTGGGATTACATAGGGTATGTTGTTGTATAGCCATCATATTTTTATTTGTTTTGAAATTTTTTTGTTTGTGTTTGTGCGCACTAGAGTCAATAGTAATACTAAATTATGTTGGTGAAATCAGATTGTTGTATAGTGGAGTGTAATTTGAGTATAATTTCTGCTCAACTTATTTATTCATGTTTCGTTGCATTTTCGGTTTCAAGTAGCATGAGTCGATCTCGTCAAAGTTAGTAGGAAGCTTAACACACAAGAATCTATAATATATGCTGGTTTTGGTATATGTTGTTTAGTCTAGCCACTTCGTTTGATGGATAATATAGCAACATGGAGTGCTTGACATTGTTCAAACTTCTCCCTTATTCCAGAGAGCTTACTTTTCTCATATGATATTTGACCCGATTATCATTGATGCAGGAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGAC</genome_strand>
        <mrna_strand>TTCATAGAACACCTGTGGATCTCAAG..........................................................................................................................GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAAC-TTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234291" ref_strand="-" ref_description="SGN-E234291 [cLEL-8-I21](-)">
      <seq>ttttttttttttttttttgcacaaactacttcatatacacaaaatgctgaaacataagcacttgtatcaattggaaatacaaaaaaaaaagtttacagatgtgacgattgcatttctagaggtaacgaaaaattatacagaaccttcttttcacttgaaatgaagctgctctatacacgaactatgcagcgagttggtataagagagctaaaagccaatatttgaacgtaaaaatcgggttattaccagatgttactcctgtaactatgcataggagaggaatatcacaggtggggtcgtcacggggtgttagaactgttagaatgctcaggagaagatgaggcacatggagaacgggaactcttgcacctccggtttcttggatatggatgcatgttcgccagttcactgactcgatgcaggacagactttggcaaaggtcgccaagacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="72009" stop="21973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23421" g_stop="23402" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.550"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23401" i_stop="22705" i_length="697">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22704" g_stop="22273" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="452" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E234291" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234291" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23421" e_stop="23402"/>
          <exon e_start="22704" e_stop="22273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTGTTTGGGAGATGCATATCCTAGAAAAGCCTTAATTGGAGGAGAGGGACTTGAAGAACATGTAATGGACTATGGAGTTGGATTTGGTGCAAGGAAAAAGTATATATACCCCGATCGCGATGTAGATAATCATCATAACATACCAAGAGAATATTTCGGTCAGAGAGGAGATAACTCTTCTGGTGATAGTGGTGGTGCTGGTGATAATAGTGATAACGGAAGAGGTTGAGCTTTGCATGTCTTGCAACTATGAATAATGATGTTATACGTATTAGAAACTATGTATGTGTGTTTGTCTACCTTCCGTTCTATGTAATATTAAACGCGAAGGGAGCGCTTTATCTCTAATGCACCTACTCGATGTAAATTTGTGAATCTTAATAGTAAGTGTTTTACTCCTTACTTGTCCTCGTAAAAAATAGAAATAAAATTTGCGTATACTTTATTCTTTTCCACCCTGGTTGTGAATCTTTTCCTTAATCAATTAACCAAAGGTCTAAATAGGGTTAACAAATTGCCCATCTCGGGGCGCGAAAAACGAGTCTACATCTCGATATGTTAGAGTCCTTTCAATCCAACTTCCCATTTCCAAAAAATTGGTACTTTTATGTGGAATACTGAGCAAAGAATGTTACCACAAATCAATTTCCCTTATGTTGCAAATCTCTCCACAAAATTTTTGAAGCAGTAAAGGAGGAATCAGCGCGACGTCACAAACTACTTCATATACACAAAATGCTGAAACATAAGCACTTGTATCAATTGGAAATACAAAAAAAAAAGTTTACAGATGTGACGATTGCATTTCTAGAGGTAACGAAAAATTATACAGAACCTTCTTTTCACTTGAAATGAAGCTGCTCTATACACGAACTATGCAGCGAGTTGGTATAAGAGAGCTAAAAGCCAATATTTGAACGTAAAAATCGGGTTATTACCAGATGTTACTCCTGTAACTATGCATAGGAGAGGAATATCACAGGTGGGGTCGTCACGGGGTGTTAGAACTGTTAGAATGCTCAGGAGAAGATGAGGCACATGGAGAACGGGAACTCTTGCACCTCCGGTTTCTTGGATATGGATGCATGTTCGCCAGTTCACTGACTCGATGCAGGACAGACTTTGGCAAAGGTCGCCAAGACAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACTACTTCATATACACAAAATGCTGAAACATAAGCACTTGTATCAATTGGAAATACAAAAAAAAAAGTTTACAGATGTGACGATTGCATTTCTAGAGGTAACGAAAAATTATACAGAACCTTCTTTTCACTTGAAATGAAGCTGCTCTATACACGAACTATGCAGCGAGTTGGTATAAGAGAGCTAAAAGCCAATATTTGAACGTAAAAATCGGGTTATTACCAGATGTTACTCCTGTAACTATGCATAGGAGAGGAATATCACAGGTGGGGTCGTCACGGGGTGTTAGAACTGTTAGAATGCTCAGGAGAAGATGAGGCACATGGAGAACGGGAACTCTTGCACCTCCGGTTTCTTGGATATGGATGCATGTTCGCCAGTTCACTGACTCGATGCAGGACAGACTTTGGCAAAGGTCGCCAAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239352" ref_strand="+" ref_description="SGN-E239352 [cLEL-9-B13](-)">
      <seq>aaagtctgtcctgcatcaagtcagtgaactggcgaacatgcatccatatccaagaaaccggaggtgcaagagttcccgttctccatgtgcctcatcttctcctgagcattctaacagttctaacaccccgtgacgaccccacctgtgatattcctctcctatgcatagttacaggagtaacatctggtaataacccgatttttacgttcaaatattggcttttagctctcttataccaactcgctgcatagttcgtgtatagagcagcttcatttcaagtgaaaagaaggttctgtataatttttcgttacctctagaaatgcaatcgtcacatctgtaaacttttttttttgtatttccaattgatacaagtgcttatgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="21993" stop="72008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22293" g_stop="22677" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22678" i_stop="23508" i_length="831">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23509" g_stop="23524" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="401" r_length="16" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E239352" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22293" e_stop="22677"/>
          <exon e_start="23509" e_stop="23524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGACGTCGCGCTGATTCCTCCTTTACTGCTTCAAAAATTTTGTGGAGAGATTTGCAACATAAGGGAAATTGATTTGTGGTAACATTCTTTGCTCAGTATTCCACATAAAAGTACCAATTTTTTGGAAATGGGAAGTTGGATTGAAAGGACTCTAACATATCGAGATGTAGACTCGTTTTTCGCGCCCCGAGATGGGCAATTTGTTAACCCTATTTAGACCTTTGGTTAATTGATTAAGGAAAAGATTCACAACCAGGGTGGAAAAGAATAAAGTATACGCAAATTTTATTTCTATTTTTTACGAGGACAAGTAAGGAGTAAAACACTTACTATTAAGATTCACAAATTTACATCGAGTAGGTGCATTAGAGATAAAGCGCTCCCTTCGCGTTTAATATTACATAGAACGGAAGGTAGACAAACACACATACATAGTTTCTAATACGTATAACATCATTATTCATAGTTGCAAGACATGCAAAGCTCAACCTCTTCCGTTATCACTATTATCACCAGCACCACCACTATCACCAGAAGAGTTATCTCCTCTCTGACCGAAATATTCTCTTGGTATGTTATGATGATTATCTACATCGCGATCGGGGTATATATACTTTTTCCTTGCACCAAATCCAACTCCATAGTCCATTACATGTTCTTCAAGTCCCTCTCCTCCAATTAAGGCTTTTCTAGGATATGCATCTCCCAAACAAGAACAAAACATGATTATAATCAACATAAACACTAATAATTTCCTCATATTGAAACACAATAACTTCATATATATGGCACAACTCCCAAAAAGAAAGAAAGGATAAGAA</genome_strand>
        <mrna_strand>AAAGTCTGTCCTGCATCAAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234046" ref_strand="-" ref_description="SGN-E234046 [cLEL-8-I21](-)">
      <seq>tttttttttttttttttttcacaaactacttcatatacacagaatgctgaaacataagcacttgtatcaattggaaatacaaaaaaaaaagtttacagatgtgacgattgcatttctagaggtaacgaaaaattatacagaaccttcttttcacttgaaatgaagctgctctatacacgaactatgcagcgagttggtataagagagctaaaagccaatatttgaacgtaaaaatcgggttattaccagatgttactcctgtaactatgcataggagaggaatatcacaggtggggtcgtcacggggtgttagaactgttagaatgctcaggagaagatgaggcacatggagaacgggaactcttgcacctccgttttcttggatatggatgcatgttcgccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="72009" stop="22020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23050" g_stop="23034" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.471"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23033" i_stop="22708" i_length="326">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22707" g_stop="22320" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="405" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E234046" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234046" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23050" e_stop="23034"/>
          <exon e_start="22707" e_stop="22320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTGAATCTTAATAGTAAGTGTTTTACTCCTTACTTGTCCTCGTAAAAAATAGAAATAAAATTTGCGTATACTTTATTCTTTTCCACCCTGGTTGTGAATCTTTTCCTTAATCAATTAACCAAAGGTCTAAATAGGGTTAACAAATTGCCCATCTCGGGGCGCGAAAAACGAGTCTACATCTCGATATGTTAGAGTCCTTTCAATCCAACTTCCCATTTCCAAAAAATTGGTACTTTTATGTGGAATACTGAGCAAAGAATGTTACCACAAATCAATTTCCCTTATGTTGCAAATCTCTCCACAAAATTTTTGAAGCAGTAAAGGAGGAATCAGCGCGACGTCACAAACTACTTCATATACACAAAATGCTGAAACATAAGCACTTGTATCAATTGGAAATACAAAAAAAAAAGTTTACAGATGTGACGATTGCATTTCTAGAGGTAACGAAAAATTATACAGAACCTTCTTTTCACTTGAAATGAAGCTGCTCTATACACGAACTATGCAGCGAGTTGGTATAAGAGAGCTAAAAGCCAATATTTGAACGTAAAAATCGGGTTATTACCAGATGTTACTCCTGTAACTATGCATAGGAGAGGAATATCACAGGTGGGGTCGTCACGGGGTGTTAGAACTGTTAGAATGCTCAGGAGAAGATGAGGCACATGGAGAACGGGAACTCTTGCACCTCCGGTTTCTTGGATATGGATGCATGTTCGCCAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................TTCACAAACTACTTCATATACACAGAATGCTGAAACATAAGCACTTGTATCAATTGGAAATACAAAAAAAAAAGTTTACAGATGTGACGATTGCATTTCTAGAGGTAACGAAAAATTATACAGAACCTTCTTTTCACTTGAAATGAAGCTGCTCTATACACGAACTATGCAGCGAGTTGGTATAAGAGAGCTAAAAGCCAATATTTGAACGTAAAAATCGGGTTATTACCAGATGTTACTCCTGTAACTATGCATAGGAGAGGAATATCACAGGTGGGGTCGTCACGGGGTGTTAGAACTGTTAGAATGCTCAGGAGAAGATGAGGCACATGGAGAACGGGAACTCTTGCACCTCCGTTTTCTTGGATATGGATGCATGTTCGCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237298" ref_strand="+" ref_description="SGN-E237298 [cLEL-7-J4](-)">
      <seq>agctctcttaaagcaactctctgcatagttagtgtatagatcagcttcatttcaagtgaaaaacaggttctgtataatttttcgtaacctctagaaatgcaatcgccacatctgtaaacttttttttttgtatttccaattgatacaagtgcttatgtttcagcattttgtgtatatcaagtagtttgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="22216" stop="72950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22516" g_stop="22707" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22708" i_stop="23894" i_length="1187">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23895" g_stop="23909" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="207" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E237298" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22516" e_stop="22707"/>
          <exon e_start="23895" e_stop="23909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGACGTCGCGCTGATTCCTCCTTTACTGCTTCAAAAATTTTGTGGAGAGATTTGCAACATAAGGGAAATTGATTTGTGGTAACATTCTTTGCTCAGTATTCCACATAAAAGTACCAATTTTTTGGAAATGGGAAGTTGGATTGAAAGGACTCTAACATATCGAGATGTAGACTCGTTTTTCGCGCCCCGAGATGGGCAATTTGTTAACCCTATTTAGACCTTTGGTTAATTGATTAAGGAAAAGATTCACAACCAGGGTGGAAAAGAATAAAGTATACGCAAATTTTATTTCTATTTTTTACGAGGACAAGTAAGGAGTAAAACACTTACTATTAAGATTCACAAATTTACATCGAGTAGGTGCATTAGAGATAAAGCGCTCCCTTCGCGTTTAATATTACATAGAACGGAAGGTAGACAAACACACATACATAGTTTCTAATACGTATAACATCATTATTCATAGTTGCAAGACATGCAAAGCTCAACCTCTTCCGTTATCACTATTATCACCAGCACCACCACTATCACCAGAAGAGTTATCTCCTCTCTGACCGAAATATTCTCTTGGTATGTTATGATGATTATCTACATCGCGATCGGGGTATATATACTTTTTCCTTGCACCAAATCCAACTCCATAGTCCATTACATGTTCTTCAAGTCCCTCTCCTCCAATTAAGGCTTTTCTAGGATATGCATCTCCCAAACAAGAACAAAACATGATTATAATCAACATAAACACTAATAATTTCCTCATATTGAAACACAATAACTTCATATATATGGCACAACTCCCAAAAAGAAAGAAAGGATAAGAAAGAAAATATTGCTTGAGAGTTTGTATTATAGAAGTTAACTCTAGAAATTTATGTTGCTATATTTAGGGTTATATAAAGATTTTTTTTGTTAATTAGTTAGGTTATATAAATGATATGTGTTGGTTTTTATGGGGTCTCCACCATAAAAGAAGATTATAAGTGGGTTTTAACATATATATATACTCGTATTAGTGTAAATTATCAGGTTATATTTTACGTTTATATATTGTAACAGATGATTTATTTTATTTTTACACATTAAGCAAGTTTATTTGTAAATATTCTTCGAGTGAGTTCGTAAATGTAATATTTTTTTTATATTGACGGTGTATATATTTTTAAAATATATTTTTTCTACAAAATGAAGCAGCCTAAATAGGGAAAA</genome_strand>
        <mrna_strand>AGCTCTCTTAAAGCAACTCTCTGCATAGTTAGTGTATAGATCAGCTTCATTTCAAGTGAAAAACAGGTTCTGTATAATTTTTCGTAACCTCTAGAAATGCAATCGCCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATCAAGTAGTTTGTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554070" ref_strand="+" ref_description="SGN-E554070 [cTSC-3-C13]">
      <seq>tagggaattacaggtcaattttcaggactgcttgggaaggttctaatttggggttaagaaggctttctgggtttgttttgatgaggtgggcagtaaaggatgcattagctcaattgttgggtatttgggtttttggagaaattgaggatcaatattcattttttaaggtttttgtgaggatgaaattgatgcccttttcggatgtggcgccatgggttacagggcatgagaaggaaagcttgtgctttatcatctcatggttcttggtggagttggtagtggggtttatttttgctgttgattcttgggtttctattgtggactcgaggaaaagtggtagggaggttgtcaaagaaggatgtcatttgttgggtattatggtgtgtcctgctataggaatcaaatgttgggaagtttttgtttgtgggtggtgtacgagatggatattaggtcgaatatttggagaagtgtttgcactggcatttcagtgtgttatggaagtttattttatggttgcttggttaacattttacttggctgcaaggtataatgatgcatcctcagttgggaggacatttggacgaagagaattggaaggctttctcgagggcgttagatgatactaggtgtgaattcgctaaagattcattcccctgccttggcattacgttgaaagaagcttaaactggatgaactatcgcgctggtggggtaatctttttgtgcttttgatgttcaatgcttcaaaattgtgagttagcacgacactgttttagaagtcaccagctatgctttgtatgtactctgttctgaggcaatatatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="38450" stop="37025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38150" g_stop="37325" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E554070" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38150" e_stop="37325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGAATTACAGGTCAATTTTCAGGACTGCTTGGGAAGGTTCTAATTTGGGGTTAAGAAGGCTTTCTGGGTTTGTTTTGATGAGGTGGGCAGTAAAGGATGCATTAGCTCAATTGTTGGGTATTTGGGTTTTTGGAGAAATTGAGGATCAATATTCATTTTTTAAGGTTTTTGTGAGGATGAAATTGATGCCCTTTTCGGATGTGGCGCCATGGGTTACAGGGCATGAGAAGGAAAGCTTGTGCTTTATCATCTCATGGTTCTTGGTGGAGTTGGTAGTGGGGTTTATTTTTGCTGTTGATTCTTGGGTTTCTATTGTGGACTCGAGGAAAAGTGGTAGGGAGGTTGTCAAAGAAGGATGTCATTTGTTGGGTATTATGGTGTGTCCTGCTATAGGAATCAAATGTTGGGAAGTTTTTGTTTGTGGGTGGTGTACGAGATGGATATTAGGTCGAATATTTGGAGAAGTGTTTGCACTGGCATTTCAGTGTGTTATGGAAGTTTATTTTATGGTTGCTTGGTTAACATTTTACTTGGCTGCAAGGTATAATGATGCATCCTCAGTTGGGAGGACATTTGGACGAAGAGAATTGGAAGGCTTTCTCGAGGGCGTTAGATGATACTAGGTGTGAATTCGCTAAAGATTCATTCCCCTGCCTTGGCATTACGTTGAAAGAAGCTTAAACTGGATGAACTATCGCGCTGGTGGGGTAATCTTTTTGTGCTTTTGATGTTCAATGCTTCAAAATTGTGAGTTAGCACGACACTGTTTAAGAAGTCACCAGCTATGCTTTGTATGTACTCTGTTCTGAGGCAATATATGACT</genome_strand>
        <mrna_strand>TAGGGAATTACAGGTCAATTTTCAGGACTGCTTGGGAAGGTTCTAATTTGGGGTTAAGAAGGCTTTCTGGGTTTGTTTTGATGAGGTGGGCAGTAAAGGATGCATTAGCTCAATTGTTGGGTATTTGGGTTTTTGGAGAAATTGAGGATCAATATTCATTTTTTAAGGTTTTTGTGAGGATGAAATTGATGCCCTTTTCGGATGTGGCGCCATGGGTTACAGGGCATGAGAAGGAAAGCTTGTGCTTTATCATCTCATGGTTCTTGGTGGAGTTGGTAGTGGGGTTTATTTTTGCTGTTGATTCTTGGGTTTCTATTGTGGACTCGAGGAAAAGTGGTAGGGAGGTTGTCAAAGAAGGATGTCATTTGTTGGGTATTATGGTGTGTCCTGCTATAGGAATCAAATGTTGGGAAGTTTTTGTTTGTGGGTGGTGTACGAGATGGATATTAGGTCGAATATTTGGAGAAGTGTTTGCACTGGCATTTCAGTGTGTTATGGAAGTTTATTTTATGGTTGCTTGGTTAACATTTTACTTGGCTGCAAGGTATAATGATGCATCCTCAGTTGGGAGGACATTTGGACGAAGAGAATTGGAAGGCTTTCTCGAGGGCGTTAGATGATACTAGGTGTGAATTCGCTAAAGATTCATTCCCCTGCCTTGGCATTACGTTGAAAGAAGCTTAAACTGGATGAACTATCGCGCTGGTGGGGTAATCTTTTTGTGCTTTTGATGTTCAATGCTTCAAAATTGTGAGTTAGCACGACACTGTTTTAGAAGTCACCAGCTATGCTTTGTATGTACTCTGTTCTGAGGCAATATATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746884" ref_strand="+" ref_description="SGN-E746884 [GI|47104398]">
      <seq>cctacttacttcaagatctgaaatttctcccagcagcacaagaaaaaaatataatttattaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaagccaaattttactatattgctggattctttctcaccgtttctccagaatctattcagcttgttgctgagcacgcagcagccaataacaagatcttctcaatgaacttttcagcaccattcatctgcgagttcttcagggatcctcaagagaaagctttgccgtatatggactttgtatttggaaatgagacagaagcaagaaccttctcaaaagtacacggctgggagacggataatgttgaagaaatagctttgaaaatctcgcaatggccaaaggcatctggacacaagaggattactgttattacacagggtgctgatcctgttgttgtcgctgaggatgggaaggtgaagctgttccctgttataccgttgccaaaagagaaacttgttgacaccaatggtgctggggatgcatttgttggaggattcttgtcacagttggttcaagaaaaacctatcgctgagtgtgttagagcaggttgttatgcatcaaacgttatcatccagaggtcgggttgtacataccctgagaagccagatttcgcttaagttcattcttagttcttcgttttcctgtgttatgccttcattgagagaaacatatatcatcgagttctactgttttcaactcgatcgattcattctaattttcaggctattgttcacaaatatatgatttgttgtaaggaattttgattgccttttgagaataactctattaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44575" stop="39773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44275" g_stop="44128" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="202" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="249" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="281" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="383" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="451" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="528" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="626" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41107" g_stop="41037" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="697" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="40954" g_stop="40888" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="764" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="40806" g_stop="40626" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="945" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="40625" i_stop="40394" i_length="232">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="40393" g_stop="40074" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1265" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1266" polyA_stop="1277"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E746884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1265</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44275" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41391"/>
          <exon e_start="41107" e_stop="41037"/>
          <exon e_start="40954" e_stop="40888"/>
          <exon e_start="40806" e_stop="40626"/>
          <exon e_start="40393" e_stop="40074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAGGTATGCAGTTGACATTGTTTATGTGTGACTTGTCTTTTTGGTAGTTTGTGCAAGAACCAATCACATTTTGTCTTTGCTTATTCACTTATGTTGTTTTCGTTTCAAACTGCTTTATAATGCTCTACTTAAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTATGCACTACCCTCCCCAGACCCCACCAGTGAGAGTACACTGGGTATGTTATTGTGCATAAACCAACCATATAATATTCTATTCCACCCTGCTGCAGATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCCGTAAGGCCAATTTCCTAACTTGTCAAGGTAAATGAAGGTAGATGATACTGATCTCGGGATTGACATTTTTCTGTTTTTTCAGGTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAGGTAATGGATGCTTTTCTTTATGTTTCCTCACATTGATGTTGACTTTATGATACATGGCTAACATGCTTCTTTGATTACTAGACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGGACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTGGTACGTAGTCTATTCTTGTTATACCTGTTTCCACTTATACAGAGTTAAAACACCCTCTCGATAACTGACAAAATATAAGGATCTTACATAGTTAAGAGAACATATTCTACGTTTAGTGATGAAGAAATGAGGTGTTATCTCCTCACATACTCTTTCTTCATGAGCTAGATTTTGGGGTTGAGTCAGACTCAAGGTCTATTTTCGTTTGACGTTTTCATTCTTACATTGATAGGGGATGCATTTGTTGGAGGATTCTTGTCACAGTTGGTTCAAGAAAAACCTATCGCTGAGTGTGTTAGAGCAGGTTGTTATGCATCAAACGTTATCATCCAGAGGTCGGGTTGTACATACCCTGAGAAGCCAGATTTCGCTTAAGTTCATTCTTAGTTCTTCGTTTTCCTGTGTTATGCCTTCATTGAGAGAAACATATATCATCGAGTTCTACTGTTTTCAACTCGATCGATTCATTCTAATTTTCAGGCTATTGTTCACAAATATATGATTTGTTGTAAGGAATTTTGATTGCCTTTTGAGAATAACTCTATTAGGAAG</genome_strand>
        <mrna_strand>CCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAG...........................................................................................................................................................................................................................................................................................ATCTTCTCAATGAACTTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCC..................................................................................GTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAG.................................................................................ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGGACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTG........................................................................................................................................................................................................................................GGGATGCATTTGTTGGAGGATTCTTGTCACAGTTGGTTCAAGAAAAACCTATCGCTGAGTGTGTTAGAGCAGGTTGTTATGCATCAAACGTTATCATCCAGAGGTCGGGTTGTACATACCCTGAGAAGCCAGATTTCGCTTAAGTTCATTCTTAGTTCTTCGTTTTCCTGTGTTATGCCTTCATTGAGAGAAACATATATCATCGAGTTCTACTGTTTTCAACTCGATCGATTCATTCTAATTTTCAGGCTATTGTTCACAAATATATGATTTGTTGTAAGGAATTTTGATTGCCTTTTGAGAATAACTCTATTAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415122" ref_strand="-" ref_description="SGN-E415122 [STM-20-F6]">
      <seq>caatgaacctttcagcaccattcatctgcgagttcttcagggatcctcaagagaaagctttgccgtatatggactttgtatttggaaatgagacagaagcaagaattttctcaaaagtacacggctgggagacggataatgttgaagaaatagctttgaaaatctcccaatggccaaaggcatctggaacacacaagaggattactgttattacacagggtgctgatcctgttgttgtcgctgaggatgggaaggtgaagctgttccctgttataccgttgccaaaagagaaacttgttgacaccaatggtgctggggatgcatttgttggaggattcttgtcacaattggttcaagaaaaacctattgctgagtgtgtaagagcaggttgttatgcatcgaacgttatcatccagaggtcgggttgtacataccccgagaagccagatttcgcatgagttcattcttagttcttggttttcctgtgttatgcctcaattgagagaaacatatcatcgagttctactgttttcaacttgatcaattcattccaattttcgggctattgttcccaaatatctggtttgttgtaaggaattttgaatgccttttttatattatttgagaataactctattaggaagattgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="41400" stop="39769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41100" g_stop="41037" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40954" g_stop="40888" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="131" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40806" g_stop="40626" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="315" r_length="184" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40625" i_stop="40394" i_length="232">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40393" g_stop="40095" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="612" r_length="297" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E415122" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415122" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41100" e_stop="41037"/>
          <exon e_start="40954" e_stop="40888"/>
          <exon e_start="40806" e_stop="40626"/>
          <exon e_start="40393" e_stop="40095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCCGTAAGGCCAATTTCCTAACTTGTCAAGGTAAATGAAGGTAGATGATACTGATCTCGGGATTGACATTTTTCTGTTTTTTCAGGTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAGGTAATGGATGCTTTTCTTTATGTTTCCTCACATTGATGTTGACTTTATGATACATGGCTAACATGCTTCTTTGATTACTAGACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGG---ACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTGGTACGTAGTCTATTCTTGTTATACCTGTTTCCACTTATACAGAGTTAAAACACCCTCTCGATAACTGACAAAATATAAGGATCTTACATAGTTAAGAGAACATATTCTACGTTTAGTGATGAAGAAATGAGGTGTTATCTCCTCACATACTCTTTCTTCATGAGCTAGATTTTGGGGTTGAGTCAGACTCAAGGTCTATTTTCGTTTGACGTTTTCATTCTTACATTGATAGGGGATGCATTTGTTGGAGGATTCTTGTCACAGTTGGTTCAAGAAAAACCTATCGCTGAGTGTGTTAGAGCAGGTTGTTATGCATCAAACGTTATCATCCAGAGGTCGGGTTGTACATACCCTGAGAAGCCAGATTTCGCTTAAGTTCATTCTTAGTTCTTCGTTTTCCTGTGTTATGCCTTCATTGAGAGAAACATATATCATCGAGTTCTACTGTTTTCAACTCGATCGATTCATTCTAATTTTCAGGCTATTGTTCACAAATATATGATTTGTTGTAAGGAATTTTGATTGCCTTTT</genome_strand>
        <mrna_strand>CAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCC..................................................................................GTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAATTTTCTCAAAAGTACACGGCTGGGAG.................................................................................ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCCCAATGGCCAAAGGCATCTGGAACACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTG........................................................................................................................................................................................................................................GGGATGCATTTGTTGGAGGATTCTTGTCACAATTGGTTCAAGAAAAACCTATTGCTGAGTGTGTAAGAGCAGGTTGTTATGCATCGAACGTTATCATCCAGAGGTCGGGTTGTACATACCCCGAGAAGCCAGATTTCGCATGAGTTCATTCTTAGTTCTTGGTTTTCCTGTGTTATGCCTCAATTGAGAGAAAC--ATATCATCGAGTTCTACTGTTTTCAACTTGATCAATTCATTCCAATTTTCGGGCTATTGTTCCCAAATATCTGGTTTGTTGTAAGGAATTTTGAATGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571281" ref_strand="+" ref_description="SGN-E571281 [12176]">
      <seq>acgagggactgctccaacagggcacttgtgctgtttgtgtgctaatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgatcagagaactgggccttggttgagaaagccaaattttactatattgctggattctttctcaccgtttctccagaatctattcaacttgttgctgagcacgcagcagccaataacaagatcttctcaatgaacctttcagcaccattcatctgcgagttcttcaggggatcctcaagagaaagccttgccgtatatggactttgtgattgtggaaatgagacagaagcaagaaccttctcaaaagtacacggctgggagacggataatgttgaagaaatagctttgaaaatctcccaatggccaaaggcatctgggaacacacaagaggattactgttattacacaggggtgctgatcctgttgttattgctgaggatgggaaggtgaagctgttccctgttataccgttgccaaaagagaaacttgttgacaccaatggtgctgggggatgcattctgttggaggattctttgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="42188" stop="40325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41888" g_stop="41834" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="131" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41488" g_stop="41391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="229" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41107" g_stop="41037" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="301" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82">
            <donor d_prob="0.826" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40954" g_stop="40888" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="370" r_length="69" r_score="0.940"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40806" g_stop="40626" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="557" r_length="187" r_score="0.917"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40625" i_stop="40394" i_length="232">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40393" g_stop="40364" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="589" r_length="32" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E571281" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41888" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41391"/>
          <exon e_start="41107" e_stop="41037"/>
          <exon e_start="40954" e_stop="40888"/>
          <exon e_start="40806" e_stop="40626"/>
          <exon e_start="40393" e_stop="40364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGAGACTGCTCCAACAGGG-ACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAGGTATGCAGTTGACATTGTTTATGTGTGACTTGTCTTTTTGGTAGTTTGTGCAAGAACCAATCACATTTTGTCTTTGCTTATTCACTTATGTTGTTTTCGTTTCAAACTGCTTTATAATGCTCTACTTAAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTATGCACTACCCTCCCCAGACCCCACCAGTGAGAGTACACTGGGTATGTTATTGTGCATAAACCAACCATATAATATTCTATTCCACCCTGCTGCAGATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCA-GGGATCCTCAAGAGAAAGCTTTGCCGTAAGGCCAATTTCCTAACTTGTCAAGGTAAATGAAGGTAGATGATACTGATCTCGGGATTGACATTTTTCTGTTTTTTCAGGTATATGGACTTTGT-ATT-TGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAGGTAATGGATGCTTTTCTTTATGTTTCCTCACATTGATGTTGACTTTATGATACATGGCTAACATGCTTCTTTGATTACTAGACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCT-GG---ACACAAGAGGATTACTGTTATTACACA-GGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCT-GGTACGTAGTCTATTCTTGTTATACCTGTTTCCACTTATACAGAGTTAAAACACCCTCTCGATAACTGACAAAATATAAGGATCTTACATAGTTAAGAGAACATATTCTACGTTTAGTGATGAAGAAATGAGGTGTTATCTCCTCACATACTCTTTCTTCATGAGCTAGATTTTGGGGTTGAGTCAGACTCAAGGTCTATTTTCGTTTGACGTTTTCATTCTTACATTGATAGGGGATGCATT-TGTTGGAGGATTC-TTGTCAC</genome_strand>
        <mrna_strand>ACGA-GGGACTGCTCCAACAGGGCACTTGTGCTGTTTGTGTGCTA-ATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGATCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAACTTGTTGCTGAGCACGCAGCAGCCAATAACAAG...........................................................................................................................................................................................................................................................................................ATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGGATCCTCAAGAGAAAGCCTTGCC..................................................................................GTATATGGACTTTGTGATTGTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAG.................................................................................ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCCCAATGGCCAAAGGCATCTGGGAACACACAAGAGGATTACTGTTATTACACAGGGGTGCTGATCCTGTTGTTATTGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTGG........................................................................................................................................................................................................................................GGGATGCATTCTGTTGGAGGATTCTTTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571279" ref_strand="+" ref_description="SGN-E571279 [12164]">
      <seq>gactgctccaacaggggacttgtgctgtttgtgtgctaatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgatcagagaactgggccttggttgagaaagccaaattttactatattgctggattctttctcaccgtttctccagaatctattcaacttgttgctgagcacgcagcagccaataacaagatcttctcaatgaacctttcagcaccattcatctgcgagttcttcaggggatcctcaagagaaagccttgccgtatatggactttgtatttggaaatgagacagaagcaagaaccttctcaaaagtacacggctgggagacggataatgttgaagaaatagctttgaaaatctcccaatggccaaaggcatctgggaacacacaagaggattactgttattacacaggggtgctgatcctgttgttattgctgaggatgggaaggtgaagctgttccctgttataccgttgccaaaagagaaacttgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="42181" stop="40338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41881" g_stop="41834" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="125" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41488" g_stop="41391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="223" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41107" g_stop="41037" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="295" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82">
            <donor d_prob="0.826" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40954" g_stop="40888" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="362" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40806" g_stop="40638" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="536" r_length="174" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E571279" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41881" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41391"/>
          <exon e_start="41107" e_stop="41037"/>
          <exon e_start="40954" e_stop="40888"/>
          <exon e_start="40806" e_stop="40638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTCCAACA-GGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAGGTATGCAGTTGACATTGTTTATGTGTGACTTGTCTTTTTGGTAGTTTGTGCAAGAACCAATCACATTTTGTCTTTGCTTATTCACTTATGTTGTTTTCGTTTCAAACTGCTTTATAATGCTCTACTTAAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTATGCACTACCCTCCCCAGACCCCACCAGTGAGAGTACACTGGGTATGTTATTGTGCATAAACCAACCATATAATATTCTATTCCACCCTGCTGCAGATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCA-GGGATCCTCAAGAGAAAGCTTTGCCGTAAGGCCAATTTCCTAACTTGTCAAGGTAAATGAAGGTAGATGATACTGATCTCGGGATTGACATTTTTCTGTTTTTTCAGGTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAGGTAATGGATGCTTTTCTTTATGTTTCCTCACATTGATGTTGACTTTATGATACATGGCTAACATGCTTCTTTGATTACTAGACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCT-GG---ACACAAGAGGATTACTGTTATTACACA-GGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACA</genome_strand>
        <mrna_strand>GACTGCTCCAACAGGGGACTTGTGCTGTTTGTGTGCTA-ATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGATCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAACTTGTTGCTGAGCACGCAGCAGCCAATAACAAG...........................................................................................................................................................................................................................................................................................ATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGGATCCTCAAGAGAAAGCCTTGCC..................................................................................GTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAG.................................................................................ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCCCAATGGCCAAAGGCATCTGGGAACACACAAGAGGATTACTGTTATTACACAGGGGTGCTGATCCTGTTGTTATTGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688131" ref_strand="+" ref_description="SGN-E688131 [T3_tus_85_M16]">
      <seq>caagatctgaaatttctcccagcagcacaagaaaaaaatataatttattaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaagccaaattttactatattgctggattctttctcaccgtttctccagaatctattcagcttgttgctgagcacgcagcagccaataacaagatcttctcaatgaacctttcagcaccattcatctgcgagttcttcagggatcctcaagagaaagctttgccgtatatggactttgtatttggaaatgagacagaagcaagaaccttctcaaaagtacacggctgggagacggataatgttgaagaaatagctttgaaaatctcgcaatggccaaaggcatctggacacaagaggattactgttattacacagggtgctgatcctgttgttgtcgctgaggatggaaaggtgaagctgttccctgttataccgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44564" stop="40360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44264" g_stop="44128" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="191" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="238" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="270" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="372" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="440" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="517" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="615" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41107" g_stop="41037" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="686" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="40954" g_stop="40888" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="753" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="40806" g_stop="40660" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="900" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E688131" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44264" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41391"/>
          <exon e_start="41107" e_stop="41037"/>
          <exon e_start="40954" e_stop="40888"/>
          <exon e_start="40806" e_stop="40660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAGGTATGCAGTTGACATTGTTTATGTGTGACTTGTCTTTTTGGTAGTTTGTGCAAGAACCAATCACATTTTGTCTTTGCTTATTCACTTATGTTGTTTTCGTTTCAAACTGCTTTATAATGCTCTACTTAAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTATGCACTACCCTCCCCAGACCCCACCAGTGAGAGTACACTGGGTATGTTATTGTGCATAAACCAACCATATAATATTCTATTCCACCCTGCTGCAGATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCCGTAAGGCCAATTTCCTAACTTGTCAAGGTAAATGAAGGTAGATGATACTGATCTCGGGATTGACATTTTTCTGTTTTTTCAGGTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAGGTAATGGATGCTTTTCTTTATGTTTCCTCACATTGATGTTGACTTTATGATACATGGCTAACATGCTTCTTTGATTACTAGACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGGACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTG</genome_strand>
        <mrna_strand>CAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAG...........................................................................................................................................................................................................................................................................................ATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCC..................................................................................GTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAG.................................................................................ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGGACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGAAAGGTGAAGCTGTTCCCTGTTATACCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313838" ref_strand="+" ref_description="SGN-E313838 [cTOA-17-I8]">
      <seq>tcttgaacaagtatgaaatcaagccgaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaagccaaattttactatattgctggattctttctcaccgtttctccagaatctattcagcttgttgctgagcacgcagcagccaataacaagatcttctcaatgaacctttcagcaccattcatctgcgagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="43282" stop="40766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43148" g_stop="43139" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.400"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43138" i_stop="42979" i_length="160">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="64" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="111" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="143" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="245" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="313" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="390" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="488" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41107" g_stop="41066" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="530" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E313838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43148" e_stop="43139"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41391"/>
          <exon e_start="41107" e_stop="41066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAGGTATGCAGTTGACATTGTTTATGTGTGACTTGTCTTTTTGGTAGTTTGTGCAAGAACCAATCACATTTTGTCTTTGCTTATTCACTTATGTTGTTTTCGTTTCAAACTGCTTTATAATGCTCTACTTAAGCCGAGGGTCTATCAGAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTATGCACTACCCTCCCCAGACCCCACCAGTGAGAGTACACTGGGTATGTTATTGTGCATAAACCAACCATATAATATTCTATTCCACCCTGCTGCAGATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTC</genome_strand>
        <mrna_strand>TCTTGAACAA................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAG...........................................................................................................................................................................................................................................................................................ATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307000" ref_strand="+" ref_description="SGN-E307000 [cLEY-11-D12]">
      <seq>ttacttcaagatctgaaatttctcccagcagcacaagaaaaaaatataatttattaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgttttgtgtgctagatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaagccaaattttactatattgctggattctttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44570" stop="41147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44270" g_stop="44128" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="197" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="244" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="276" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="378" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="447" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="524" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41447" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E307000" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44270" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTG-TTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCA</genome_strand>
        <mrna_strand>TTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447940" ref_strand="+" ref_description="SGN-E447940 [cSTS-1-C10]">
      <seq>atttctcccatcagcacaaggaaaaaatataatttataaaaacagtggatgtcgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcacaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacataactcaatcagagtggctcaatggatgctacaatttccaggtgcaacaagttacatgggctcagatgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgatgatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggacattgggtgctaacttatcagcagcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaggccaaattttactatattgctggattctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44553" stop="41148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44253" g_stop="44128" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="181" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="228" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="260" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="362" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="430" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="507" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41448" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="548" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E447940" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44253" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTAT-TAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTC</genome_strand>
        <mrna_strand>ATTTCTCCCATCAGCACAAGGAAAAAATATAATTTATAAAAACAGTGGATGTCGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCACAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACATAACTCAATCAGAGTGGCTCAA........................................................................................TGGATGCTACAATTTCCAGGTGCAACAAGTTACATGGGCTCAGATGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGATGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GACATTGGGTGCTAACTTATCAGCAGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAGGCCAAATTTTACTATATTGCTGGATTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445442" ref_strand="+" ref_description="SGN-E445442 [cSTA-45-F5]">
      <seq>attactcgatatctcagccgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaagaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctacatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgatcagagaactgggccttggttgagaaagccaaattttactatattgctggattctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44472" stop="41149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44172" g_stop="44128" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="99" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="146" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="178" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="348" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="425" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41449" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="465" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E445442" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44172" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCT</genome_strand>
        <mrna_strand>ATTACTCGATATCTCAGCCGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAAGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTACATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGATCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336785" ref_strand="+" ref_description="SGN-E336785 [cTOE-5-M7]">
      <seq>aagatctgaaatttctcccagcagcacaagaaaaaaatataatttattaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaagccaaattttactatattgctggattctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44563" stop="41150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44263" g_stop="44128" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="190" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="237" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="269" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="371" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="439" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="516" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41450" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="555" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E336785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44263" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTC</genome_strand>
        <mrna_strand>AAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303512" ref_strand="+" ref_description="SGN-E303512 [cLEX-2-J11]">
      <seq>ctacttacttcaagatctgaaatttctcccagcagcacaagaaaaaaatataatttattaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcattggttgctaacttatcagctgcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaagccaaattttactatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44574" stop="41164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44274" g_stop="44128" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="201" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="248" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="280" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="382" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="450" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="527" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41464" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="552" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E303512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44274" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATAT</genome_strand>
        <mrna_strand>CTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAAGCCAAATTTTACTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470035" ref_strand="+" ref_description="SGN-E470035 [cSTB-16-D16]">
      <seq>aatttctcccagcagcacaaggaaaaaatataatttataaaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctacaatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcattggttgctaacttatcagcagcaaactgctacaaggttgaccatttgaaacgaccagagaactgggccttggttgagaaggccaaattttactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44554" stop="41165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44254" g_stop="44128" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="182" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="229" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="261" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="363" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="431" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41573" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="508" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41488" g_stop="41465" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="532" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E470035" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44254" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41573"/>
          <exon e_start="41488" e_stop="41465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTAT-TAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGGGTAGGAACAGCAATTCCTGTTTCTATGTTGATAAGACCTAAGATATTAAGTCTATTTTAAACTAACACATCTATTTGTGGACAGTTGAGAAAGCCAAATTTTACTATA</genome_strand>
        <mrna_strand>AATTTCTCCCAGCAGCACAAGGAAAAAATATAATTTATAAAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACAATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCATTGGTTGCTAACTTATCAGCAGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG....................................................................................TTGAGAAGGCCAAATTTTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313733" ref_strand="+" ref_description="SGN-E313733 [cTOA-17-I18]">
      <seq>ttcttgaacaagtatgaaatcaaggggaacaatgcaattcttgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggacttgtgctgtttgtgtgctagatggcgagaggtcaattggttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="43282" stop="41527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43149" g_stop="43139" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.455"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43138" i_stop="42979" i_length="160">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="65" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="112" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="144" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="246" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="314" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41649" g_stop="41636" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="329" r_length="15" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E313733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43149" e_stop="43139"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41834"/>
          <exon e_start="41649" e_stop="41636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAGGTTAGTTTAATGCAATTTTCCGTTATATGTGTAGTTGTGTACTATGGTTCTGGTGTAGAGTTTAGTCTTTCTTTCTTGTTATCCAAGGAGGGAAAGGAAGAGAAAAAGAAACACTCGAAATGATTAAAGAAGAATTTCCACATGCTTTTCTTGTTAAGGTAATGATCTGCTATTGATTATGCAGGTC-ATTGGTTGCTA</genome_strand>
        <mrna_strand>TTCTTGAACAA................................................................................................................................................................GTATGAAATCAAGGGGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG........................................................................................................................................................................................GTCAATTGGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477290" ref_strand="+" ref_description="SGN-E477290 [cSTB-47-D10]">
      <seq>atttctcccagcagcacaaggaaaaaatataatttattaaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctacaatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactatgaggatgagactgctccaacagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44553" stop="41564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44253" g_stop="44128" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="181" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="228" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="260" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="362" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41864" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="400" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E477290" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44253" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATT-AAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTATGAGGATGAGACTGCTCCAACAGGGAC</genome_strand>
        <mrna_strand>ATTTCTCCCAGCAGCACAAGGAAAAAATATAATTTATTAAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACAATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474545" ref_strand="+" ref_description="SGN-E474545 [cSTB-36-L4]">
      <seq>cttcaagatctgaaatttctcccagcagcacaaggaaaaaatataatttataaaaacaatggagtaccgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctacaatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44567" stop="41781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44267" g_stop="44128" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="196" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="243" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="275" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="377" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41890" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="389" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E474545" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44267" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTAT-TAAACAATGGAGTA-CGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTAT</genome_strand>
        <mrna_strand>CTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGGAAAAAATATAATTTATAAAAACAATGGAGTACCGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACAATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475165" ref_strand="+" ref_description="SGN-E475165 [cSTB-39-O2]">
      <seq>gtaggcacacacttcatcaacaacccttcatcactcaccagccgacactatttttgtagtactatataatcattatctttatatactccatcgcaaaaattgcacctacttacttcaagatctgaaatttctcccagcagcacaaggaaaaaatataatttattaaaacaatggagtacgatgggattcttttgggcatgggaaatccattactcgatatctcagctgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctacaatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaggaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44659" stop="41781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44357" g_stop="44128" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="253" r_length="231" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="307" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="354" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="386" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="488" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41891" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="499" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E475165" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44357" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCATCACTCACCAGCCGACACTATTTTTCTAGTACTATATATAATCATATCTTTATACACT-CATAGCAAAAGTTGCACCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATT-AAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTACTA</genome_strand>
        <mrna_strand>ACCCTTCATCACTCACCAGCCGACACTATTTTTGTAGTACTATATA-ATCATTATCTTTATATACTCCATCGCAAAAATTGCACCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGGAAAAAATATAATTTATTAAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACAATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444068" ref_strand="+" ref_description="SGN-E444068 [cSTA-41-C8]">
      <seq>agagcaccaagttgtaggcacacacttcatcaacaacccttcatcactcaccagccgacactatttttgtagtactatataatcataatctttatagcaaaaattgcacctacttacttcaagatctgaaatttctcccagcagcacaaggaaaaaatataatttataaaacaatggagtgcgatgggattcttttgggcatgggaaatccattactcgatatctcagccgttgtagatcaagatttcttgaacaagtatgaaatcaagccgaacaatgcaattctcgcagaggacaagcacttgcctatgtatgatgaaatggcagccaagcccactgttgaatacattgctggaggtgcaacacaaaactcaatcagagtggctcagtggatgctaccatttccaggtgcaacaagttacatgggctcagttgggaaggacaagtttggggaagaaatgaagaaaaatgcacaggatgctggcgtcaatgttcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="44679" stop="41781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44357" g_stop="44128" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="256" r_length="221" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42978" g_stop="42925" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="310" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42443" g_stop="42397" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="357" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42304" g_stop="42273" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="389" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42184" g_stop="42083" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="491" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41901" g_stop="41893" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="500" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E444068" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44357" e_stop="44128"/>
          <exon e_start="42978" e_stop="42925"/>
          <exon e_start="42443" e_stop="42397"/>
          <exon e_start="42304" e_stop="42273"/>
          <exon e_start="42184" e_stop="42083"/>
          <exon e_start="41901" e_stop="41893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCATCACTCACCAGCCGACACTATTTTTCTAGTACTATATATAATCATATCTTTATACACTCATAGCAAAAGTTGCACCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAAGTAATGTTTTGTTATGTTTCTTGGCACCCCATTTGTCTAAATTACATGTTTTAGCTAGTTTTTGTTTGTTTTTTAAGCTATGTATGATGCTGTACCCGTACGTGTCGGATTCTTTAAAAATACACTTTTTTTAAGGATCCCACGATATTTTTGAAGATTCCGAGCAACATATATTTTCAGTCTACCTTTGTAGACGTCTAAAGTCACCATTTTTAGCTAGTTTTATATGTTTTAAGCAATGTTGCTAGTACTTTCTGTAAATGATGTAGCACCTGTGTCGGATCCTTGAAAAATGCAGTGCTTGTGAAGGATACATCTCACACCCGTCGATATTTTTGAAGATTTCGAGCAACATAGATATAAAGTTTACCTTTCTAGATGTCTAAAGTCCCCAATTTTTAGCTAGTTTTGTTTGTTTTAAGCTATGGTGTTCGACTCTCCATAAATGATACACACCTGTATGGAATCCTTCAAGAATGCACTACTTCTGAAGGAGACATTTTTGAAGATTCCGAGCAAGATAATATCTAAATTCCCCATATTTAGCTAGTTTTGTTTGTTTTATGCCTATTATAGTGTACCCTTTTGGTTTGATTTTATAGATCTTGTTAGTTCCTAAAGCATATTGTACATAATGGCTGTCTACATCTATGCTTGATGTGGCATGTGGATATTGATCTTTGATTTGTCTTTTAAGATGGCAATATAAATGACAAAACTAAAAGTACAAAGGAAAAGACTCAAGCTTTGTTCAATCCTTTTTCTTATTTTTAAACGTGATCTTTTTCTTTTCTTTTGTTATAGTCTTGAATTGGATCTTAGTGTAATATTTGTGTAACTATTGATAGTGTTTCAGAGCCTACACGGCTACTGCGGTGGCTATAGTATTGGGGGGGGGGGGGGTGTTGTAGACAAAAAAGTTAGCATAAGGTGGCTCCATTGCTGATTTTAGCTCTATAAGGGCATTGGTTCTTTTGATTGGTAAAACTGCATTGACACGCTTTAGCATAAGCTAGCCCCGTCACTGTTTTTAATTCTTTACTTGCGTTGGTTCTTTTGGTTGGTAAAAAAGCATTGGTTTAATTTGCAGCTTTGGATATCTTTTTCCTTCCATTGTGTCATGTGAATGACTTGATTTTTTACTCATAGGTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTATGTAAGTGGTTTCTTTTTAGGCTTTAGTTTTTTGTAATTGAAACTACTTCATTAGGTTAGCTTATACCGTGCTGAGTAAATCTGAAGAACTTGAATTTTTCCATAGACTTTGTAGGTAGCACAATTTCCTTTTTCTTGTAGATTAGTTTGGAGAAATAAGATTTATTTAGTTTAAGGACGTTTAGGGGTTTCTTTTTTCCTGTTTAAGTGTCCGTTTCATGGGAATACACTTTCTTGAAATTAATACTCAAATAGGTATTATTTAATAACATTTCCAACCAGCTTTGTGAAGGGTGAGCCTACAAAAAGTGGTAATGAGCCTATTATCATTGCTGATTTGAACTGTGGAAGAATAGTTGTATGCTTGGGGAGTGGGGACACAAACTTAAGTAAGAGAGGCTACCAGCCCACGTTCTTCTGAAGCAAAGTGTTATTTTTATGCCTTAAGTCAGAAAATTGTTGAAACAACTTTTTTATACCAGGTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAGGTAATTTTCCCATCACCCAATACATTGTATTATATTAATTCATAATGAAGATACTAGGATCATTGACTCGTGGTCTTAATTCTGATATGCAGGTGCAACACAAAACTCAATCAGAGTGGCTCAGGTGTCTTGTCGTCTGAAGTTTTTAGTGGTTCTAGGCAATCTGACATGAACATATAATTTAGAAGAATAATTTCTTTTTGCATTTTCAGTGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAATGTAAGATTCTTTTTCCTTGATTTTCTCTTCTTAGTTTGACAATCTTTTTGTGTTTCGGGGCATTGTGGATTTGTTAGCACGATTATTACTCATGTTTGCCTTTATAATCTATGCTTTGAACTTGTAACATGAGAATGAAATATTTTGACCCCAACTTGTCTTTACGTACGGATTAATATAGGTTCATTAC</genome_strand>
        <mrna_strand>ACCCTTCATCACTCACCAGCCGACACTATTTTTGTAGTAC--TATATAATCATA-----AT-C-TTTATAGCAAAAATTGCACCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGGAAAAAATATAATTTATAAAACAATGGAGTGCGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCCGTTGTAGATCAAGATTTCTTGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATCAAGCCGAACAATGCAATTCTCGCAGAGGACAAGCACTTGCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG............................................................................................GTGCAACACAAAACTCAATCAGAGTGGCTCAG........................................................................................TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAAGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT.....................................................................................................................................................................................GTTCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226853" ref_strand="+" ref_description="SGN-E226853 [cLEL-26-L5](-)">
      <seq>caggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgagcttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46268" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45968" g_stop="45595" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45594" i_stop="45531" i_length="64">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45530" g_stop="45521" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="384" r_length="9" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="397"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E226853" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45968" e_stop="45595"/>
          <exon e_start="45530" e_stop="45521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTG-AAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCACTCAAAA</genome_strand>
        <mrna_strand>CAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAGCTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTAT................................................................GTA-TAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732803" ref_strand="+" ref_description="SGN-E732803 [LB03AG07]">
      <seq>tgtagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaattcttctgttcaatcaagtttctcttgttttatttaaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46446" stop="45237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46146" g_stop="45528" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E732803" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46146" e_stop="45528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCA</genome_strand>
        <mrna_strand>TGTAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302639" ref_strand="+" ref_description="SGN-E302639 [cLEX-1-M15](-)">
      <seq>tgtggacagggaatacgtgtttgcctatgatgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtcagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaattcttctgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46544" stop="45268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46244" g_stop="45564" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E302639" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46244" e_stop="45564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTT</genome_strand>
        <mrna_strand>TGTGGACAGGGAATACGTGTTTGCCTATGATGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTCAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285103" ref_strand="+" ref_description="SGN-E285103 [cLER-20-E11]">
      <seq>ttttttgaacagaagaattgaatagacataagcacactgtcacttttcatttaagttttttactgaaaagagacatattcatatttaagagagtttaacactctctcaagttaaccaaaaaagatgtaagttcacaacatattatgatagtaattcaccataaagcaaaaaaagaatctgaaaaatagcactagacaagcattcacaactggtctttttttctggcaagcatctagcagattggaagaggagcaccattccagctcttgagacactccaacaatggatcaatgatctgtccattgcacattgctgtgaacaccttgtcgatctcctcaccgggtgatcgaactttttcacctgtcaaaagttctgatccaagttcttgtctcaccaacctgtacaatggatatgatctgcattctgtgatcctgttaggaattgcagggttgccactttcaacaacagctcttgcactctcaacttctttaggcaacacggcctttaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcagggatcatcagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45268" stop="46518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45568" g_stop="46218" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E285103" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45568" e_stop="46218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGAACAGAAGAATTGAATAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCAT</genome_strand>
        <mrna_strand>TTTTTTGAACAGAAGAATTGAATAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414514" ref_strand="+" ref_description="SGN-E414514 [STM-19-N5]">
      <seq>caaaatctttttagacacaagcacactgtctcaactctcctttaagttttttactgaaaagagacattcatatttaagagagtttaaacactctctcaagttaaccaaaaaagacgtaagttcacaacatgttatgatagtaattcaccatagagtaaaaaaagaatctgaaaaatagcactagacaagcattaacaactggtcctttatctggcaaacatttagcagattggaagaggagcaccattccagctctggagacactccaacaatggatcaataatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggcgatcgaactttttcacctgtcaacagttctgatccaagttcttgtctcaccaacttgtacaatggatatgatctgcattctgtgatcctgttaggaattgaagggttgccactttcaagaacagctcttgcactctcaacttctttaggcaacattgccttcaattcgtcctcgaaagctacaatcttttggaagattgagctgntcacattcttctcactttcaccattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45285" stop="46443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45579" g_stop="46143" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E414514" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45579" e_stop="46143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATTGAATAGACATAAGCACACTGTCACTT-T-TCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTT-AACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCT</genome_strand>
        <mrna_strand>CAAAATCTTTTTAGACACAAGCACACTGTCTCAACTCTCCTTTAAGTTTTTTACTGAAAAGAGAC--ATTCATATTTAAGAGAGTTTAAACACTCTCTCAAGTTAACCAAAAAAGACGTAAGTTCACAACATGTTATGATAGTAATTCACCATAGAGTAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTC-CTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTGGAGACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAGTTCTGATCCAAGTTCTTGTCTCACCAACTTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGAAGGGTTGCCACTTTCAAGAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACATTGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGNTCACATTCTTCTCACTTTCACCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623047" ref_strand="+" ref_description="SGN-E623047 [73421]">
      <seq>tttttttgaattagacacaagcacactgtcacttttcatttaagttttttactgaaaagagacattcatatttaagagagtttaaacactctctcaagttaaccaaaaaagacgtaagttcacaacatgttatgatagtaattcaccatagagtaaaaaaagaatctgaaaaatagcactagacaagcattaacaactggtcctttatctggcaaacatttagcagattggaagaggagcaccattccagctctggagacactccaacaatggatcaataatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggcgatcgaactttttcacctgtcaacagttctgatccaagttcttgtctcaccaacttgtacaatggatatgatctgcattctgtgatcctgttaggaattgaagggttgccactttcaagaacagctcttgcactctcaacttctttaggcaacattgccttcaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattattcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggttgaactgcagggatcatcagcataggcaaacacgtattccctgtccacgactcgaagcaattccttctcgcagaatcttgcaggatgaagttcaccattagcacccattgtcaaagttctcttagctacttggctcaccgtgttcttgacagcattcctcaagttttcctccaaaatggcttaagtcgatagcttggcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45285" stop="46697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45580" g_stop="46397" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E623047" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45580" e_stop="46397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGAA-TAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTT-AACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCC-AAATGCCTTAAGTCGATAGCTTGGCAAAGC</genome_strand>
        <mrna_strand>TTTTTTTGAATTAGACACAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGAC--ATTCATATTTAAGAGAGTTTAAACACTCTCTCAAGTTAACCAAAAAAGACGTAAGTTCACAACATGTTATGATAGTAATTCACCATAGAGTAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTC-CTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTGGAGACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAGTTCTGATCCAAGTTCTTGTCTCACCAACTTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGAAGGGTTGCCACTTTCAAGAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACATTGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTATTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTTGAACTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACGACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACCGTGTTCTTGACAGCATTCCTCAAGTTTTCCTCCAAAATGGCTTAAGTCGATAGCTTGGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734224" ref_strand="+" ref_description="SGN-E734224 [LB12AD11]">
      <seq>taatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaactttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46767" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46467" g_stop="45581" g_length="887"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="888" r_length="888" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E734224" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46467" e_stop="45581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAAC-TTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCT</genome_strand>
        <mrna_strand>TAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349300" ref_strand="+" ref_description="SGN-E349300 [cTOS-1-A11]">
      <seq>aggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46300" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46000" g_stop="45581" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E349300" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46000" e_stop="45581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCT</genome_strand>
        <mrna_strand>AGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307520" ref_strand="+" ref_description="SGN-E307520 [cLEY-24-O5]">
      <seq>agagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46134" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45834" g_stop="45581" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E307520" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45834" e_stop="45581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCT</genome_strand>
        <mrna_strand>AGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425203" ref_strand="+" ref_description="SGN-E425203 [STM-44-B6]">
      <seq>caaacttttttttttgaatagacacaagcactttgtcacttttcatttaagttttttactgaaaagagacattcatatttaagagagtttaaacactctctcaagttaaccaaaaaagacgtaagttcacaacatgttatgatagtaattcaccatagagtaaaaaaagaatctgaaaaatagcactagacaagcattaacaactggtcctttatctggcaaacatttagcagattggaagaggagcaccattccagctctggagacactccaacaatggatcaataatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggcgatcgaactttttcacctgtcaacagttctgatccaagttcttgtctcaccaacttgtacaatggatatgatctgcattctgtgatcctgttaggaattgaagggttgccactttcaagaacagctcttgcactctcaacttctttaggcaacattgccttcaattcgtcctcgaaagctacaatcttttggaagattgagctggtcacattcttctcactttcaccattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45285" stop="46443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45585" g_stop="46143" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="570" r_length="557" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E425203" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45585" e_stop="46143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTT-AACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCT</genome_strand>
        <mrna_strand>TTGAATAGACACAAGCACTTTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACAT--TCATATTTAAGAGAGTTTAAACACTCTCTCAAGTTAACCAAAAAAGACGTAAGTTCACAACATGTTATGATAGTAATTCACCATAGAGTAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTC-CTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTGGAGACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAGTTCTGATCCAAGTTCTTGTCTCACCAACTTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGAAGGGTTGCCACTTTCAAGAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACATTGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGGTCACATTCTTCTCACTTTCACCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609552" ref_strand="+" ref_description="SGN-E609552 [25563]">
      <seq>gttgacagggaatacgtgtttgcctatgctgatgatccctgcagttccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggctgtgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaaccctgtaatttctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaactgttgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggaatgtctcaagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactcttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaaactctcttaaatatgaatgtctcttttcagtaaaaaacttgaattgacaaagtgacagtgtgcttatgtctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53494" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53194" g_stop="53072" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53071" i_stop="46139" i_length="6933">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46138" g_stop="45586" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="677" r_length="554" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E609552" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53194" e_stop="53072"/>
          <exon e_start="46138" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTTAATCTTAAAAACAACATATTAGATGATTATCATTTAACATTAACAATAACCTACCCAATTTTATATTAAGATTTAACAATTTTTAATCACGCCCACTACGACAAAAACAGCTTTTAGCGATATTAAATATTGACATTGATAAACAGTGTTAAAGTTTTTACTGGTATTAGTTAAGTGTCATTAGAACCAATATCGCTAAAGACTTTAGCGGTAAAAATACATATTTAGCGGCAATTAAGAATTGACTTTCGCTAATGATCATTTTTACTATAGTGGCTTCGTCAAAGTGATTCATAGGTCATTTACGTAGTCATAAGTTTCTGCTATGGTAGTTTATAGTAAAACAACAATATCTTTTTTACTCCAAACTCAAAATAAGATAAACTCGGTGGCGTTGAAAAAAAATCCATAAAAATTTAACTTAATATCTCATAGACTACCTAATTCATTACGTAAGATATGATCATTTAAAGTTAACCTAACATCTTATATCAAAACTTAATCGATAAAAAATGATAGTTGGCAAAACAAAGAGTGTGGGGTCGGGATGACAATCAAGTGATATGGTTGGAGAAATGGTCACTTTCGTTAAAATTTATAATTTACTGTTCAATTTTTTTTAACGAAAGCTAAAGTACTAGTAGGTGATTTTTTTTAACGTACTAAAATATACATGCTTATATTAATGAAGATATCATATACGCATTTAAAATAATTGAAATATACGTAAATTAATTCGATCGTAAAATCATTAAAACATAATCTAGTCCACCCTGGCATGATAGAAGTATGTATTTATTACTCTTAAAAATAATTCTTGGTAGATTTTATGGACTTAAAGAGGACACGTTTGTCCACCCAATACACTTCAAAATAGTGTTTTTATTTTTAATTATGAAAGAATTTTAACTATTACTTAACTAACCATATAATTAATAGAAAAAATAAGTTAATATGCTATTGAAAGTTCAATTTTCTCTTAATAGATCAAAATAAACAGAGAATTTCATTTAATGGAAAGGTGCAATTTTTTAATGTATAATTTGAAATGGCTTAATATTACCTTTGTTATATTTTGGATTCATTCCTACTTTTGCTTTCGTATTTGTTTTTGTCATTAACGAAGTTTCAAGGAATATTCACAATAATTTACATAATTTTAAAATTGTGATCTAACATTTCTCAAAAGAATTACCAATTTGCTCAAAAAAATATTCTTAAGTTATGATTTGAAAGTGATATTCACTTTTGTTGCTTCCACTTCTTTGTTGATATTTCAAAAAGGCATATAATCAGGTAATAAGGAATGTCGTATTTTCATTAAATGATTCAAAAAATAAACATATTGTGCATGATGTTCGAATTTGAAATCTTTATGATGAATGTTGGACTTTGTAAATTATTAACTGAACCTATAATTTTGTGTCAAGTGATTCAAAATCTAAATATATACTTGAGAAAACCTTATATATACAATATAATTTTCTATCGAGGAGGTTTAGAGCTATCAAAACGGACTTAGCCCATGGGGCTGACCCAGCCCAATCTGTTATTAGGGTAGGATTGAGACAGAATTTTTCAAGTCAATCTAGAGCCTATAAGTTCGGCCCATATAAGTCCTTGGTCCTTGAGGCTTGAATGAAGTCGAGCCAGGATCGGCCGATGGGCCAATTTTTTTTATTCAAGGGTACAATACTCTCACTAGTATATAATATAATTACTTAAATACACGTTATATTGTAATATTATGACTTGTCAGATTTTGATATGTCGAGATACATGTATCTCGAACTATGTGGACTCAAAATTAGGTTAATTTGTTTTAGATACACGTTATTCAAGTAGATCCGCATGTGTCTACCATACATGAATATCGCTCCCTCTCCTCTCCCTCCCCCCCCCCCAACCCCCCCAATCTTACTTGTCACTCTCTTTTCTCGTTCACGTATATGGTATGCGAGATTCTTACTAATTACACTAAATTTTTTGCTAGTGTTACTGGAAAAAATACTATTTTTTTGTCATAATTGATTAGAAAATCTTCTCATTTCTTGATGTTATAAAATTATAACTTTGAAATGAAAAAAAGGGCTAACTCACCCAGCTCTCAATCCTTCTAGGGTTGGGTTGAGTTGAGCATTTTCAGGCTCTTCCAAATGAAGAGCCGGCTTGCCCTAGCCCTTCAAGTTCCTTGGCCCGCGGCTAAGGCCGGGTGGGGCTGGGCGAACCCTTTTTGATAGCTCTAACAAGGTTCAAGAATACTTTGATAATTTCTTCAGATCAATTTGAGGAACCCTAAGTAAAAAGTATTTCCTTCTTAAGTTAATTTTACATGACACAAATTTAAATTAATTAAACTTAATTAATAAAAAAAATTTTAAAAAACAATAGTTGACCAATCCAATAAAGTGGAAACTCACTTATAGGTGAACACTCAAGTATAAAAGCAATTTGAAGCATATGTTAAAATTAATTAATAAATATATATGGAACAAAACCTAACAAAATTACATCCACTTGCTTCGCAAAGAAACTTTCTTTAATTTTTATCACCTTATTATCTTCAAGTGTCTTTCCTATTCAAAGCCATCAATTTCTATCAACCTTCCTACCCAATTAAAAAAGTCAAATTTAAATATTTTTTGTTTTAAAAAAAACAAACAAACAAAAAAAAAAAAAAAAAGAAATGGCAGTAGCATGGAAATCACTTAGTTTGAACTATATATTAGTTGTTAATTTTGACTCATATTGGATTTGACGGAGTAATATTGACTATGCATTAAAGTTATTTCTTTCGTAGCAACTAATATAAAATTGATGACATATTCATATAATAATATTAAATAATATAGAAAAGCTGCAAATTAATTAGATTTTATTTGTGTGAATTTGTTCAAATTATTAGGTTGAGATCCAAATATAATTAAAAGAGACGAATTATGTTAGATTGACAATTAAAGTACAACGGATTAACAATAATATTCATAGTTATTCTTATTTTTTTAATCGTAGTTGATTAATTCTTGATTGAAACTAATTTCATAGTAAAAAAATATTAAACTTTAAATTTCTGTGATAAACATTTTCACTTATTGAAAATAGTAATACAAATATAAAAACACTCCTAATAAATAATAAACTATAGGATTTAAACCGATAAAATAAATATCTACTTCTATTTGTAAATGTTTTTGTACTAGTAATTACAAAGTATATCATACTTTTTCTATAAATTAGTTTAAAGCGTATGTATGTCTTAGTGTTTTTTATCACGATAAAAATAAATTAAGAGACACGAAAGTAAGACATACACATTGATAATCACTAAATCAATATTTAATAATTCTATAATAATTTAGCATGTCTACAAACTGATAGCCGATAAATCAAATCAAAATGACCGAATATTCAACCCTAATATTAGGAAATTTTTATCTATGTTAATAATCATTTTTTTTCTCTCATCAACATTAAGAAGAAAAGAGTGTAGAATTACAATTTAACCCTTTTATTTTCTCCCAACAACCCAAAAAAACTCCAAACATATCCTAAATCCACCAACCCCCAAAATTTAATTTTTTTTTCTCTCAATATATTTTTAAAAAAAATTATATCCATGTTGCATGAAATACCCACGTCATCCTCAAATCTCAACCGTTAATCACAATTAAAATCAATGGCTATAATTAATCTTCCAACAACCACCATTTTTAGTCATTTCCTACAACCCCCTCTCACATAATTTTCTTTACCTACCATCCTTTGTTCCTCTCTATATATACTCACCACATATATCATCTACCATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCT-TTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTT-AAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTT-AAATGA-AAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>GTTGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTGTAATTTCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAATGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAAACTCTCTTAAATATG-A-ATGTCTCTTTTCAGTAAAAAACTTGAATTGACAAAGTGACAGTGTGCTTATGTCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714393" ref_strand="+" ref_description="SGN-E714393 [FB11BC09]">
      <seq>gtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46599" stop="45286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46299" g_stop="45586" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="730"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E714393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46299" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>GTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323057" ref_strand="+" ref_description="SGN-E323057 [cTOB-28-O17]">
      <seq>agagagagagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttacatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46435" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46136" g_stop="45586" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="564"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E323057" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46136" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>AGAGAGAGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTACATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285208" ref_strand="-" ref_description="SGN-E285208 [cLER-20-L9]">
      <seq>ctcaatcttccaaaagattgtagctttcgagaacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatgcacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctggtagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46412" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46112" g_stop="45586" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="545"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E285208" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285208" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46112" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>CTCAATCTTCCAAAAGATTGTAGCTTTCGAGAACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGCACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGGTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216196" ref_strand="+" ref_description="SGN-E216196 [cLEL-13-D17](-)">
      <seq>aagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgaaagaggtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46325" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46025" g_stop="45586" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="465"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E216196" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46025" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGA-GTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>AAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAAAGAGGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309768" ref_strand="+" ref_description="SGN-E309768 [cLEY-26-J14]">
      <seq>caattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46311" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46011" g_stop="45586" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E309768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46011" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>CAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216220" ref_strand="+" ref_description="SGN-E216220 [cLEL-13-G1](-)">
      <seq>tgcagatcatatccattgtacaggtttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46288" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45988" g_stop="45586" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="423"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E216220" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45988" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATCATATCCATTGTACAGG-TTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>TGCAGATCATATCCATTGTACAGGTTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216103" ref_strand="+" ref_description="SGN-E216103 [cLEL-13-G1](-)">
      <seq>agaacttttgacaggtgaaaaagttcgatcaaccggtgagaagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatttgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttatgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46241" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45941" g_stop="45586" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="375"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E216103" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45941" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>AGAACTTTTGACAGGTGAAAAAGTTCGATCAACCGGTGAGAAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATTTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTATGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604985" ref_strand="+" ref_description="SGN-E604985 [57004]">
      <seq>ttgcagcaatgtgcaatggacagattattgatccattgttggagtgtctccagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactctatggtgaattactatcataacatgttgtgaacttacgtcttttttggttaacttgagagagtgtttaaactctcttaaatatgaatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttgtgtctattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46182" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45885" g_stop="45586" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="330"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E604985" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45885" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTG-TTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>TTGCAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCCAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTATGGTGAATTACTATCATAACATGTTGTGAACTTACGTCTTTTTTGGTTAACTTGAGAGAGTGTTTAAACTCTCTTAAATATG-A-ATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTGTGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355011" ref_strand="+" ref_description="SGN-E355011 [cTOS-19-N23]">
      <seq>agctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46132" stop="45285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45832" g_stop="45586" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E355011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45832" e_stop="45586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</genome_strand>
        <mrna_strand>AGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214681" ref_strand="+" ref_description="SGN-E214681 [cLEC-79-D23]">
      <seq>atagacataagcacactgtcacttttcatttaagttttttactgaaaagagacatattcatatttaagagagtttaacactctctcaagttaaccaaaaaagatgtaagttcacaacatattatgatagtaattcaccataaagcaaaaaaagaatctgaaaaatagcactagacaagcattcacaactggtctttttttctggcaagcatctagcagattggaagaggagcaccattccagctcttgagacactccaacaatggatcaatgatctgtccattgcacattgctgtgaacaccttgtcgatctcctcaccgggtgatcgaactttttcacctgtcaaaagttctgatccaagttcttgtctcaccaacctgtacaatggatatgatctgcattctgtgatcctgttaggaattgcagggttgccactttcaacaacagctcttgcactctcaacttctttaggcaacacggcctttaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcagggatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45289" stop="46513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45589" g_stop="46213" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E214681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45589" e_stop="46213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATC</genome_strand>
        <mrna_strand>ATAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738005" ref_strand="+" ref_description="SGN-E738005 [LC12AA02]">
      <seq>catttacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46684" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46385" g_stop="45591" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="808"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E738005" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46385" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>CATTTACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424771" ref_strand="-" ref_description="SGN-E424771 [STM-44-G5]">
      <seq>gaattgcttcgagtcgtggacagggaatacgtgtttgcttatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaactgttgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggagtgtctccagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactctatggtgaattactatcataacatgttgtgaacttacgtcttttttggttaacttgagagagtgtttaaactctcttaaatatgaatgtctcttttcagtaaaaaacttaaatgaaaagtgacgagagtgcttgtgtctaaaaaaaaaaaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46558" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46258" g_stop="45591" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="680"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E424771" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424771" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46258" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTG-TTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGAC-AGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>GAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCTTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCCAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTATGGTGAATTACTATCATAACATGTTGTGAACTTACGTCTTTTTTGGTTAACTTGAGAGAGTGTTTAAACTCTCTTAAATATG-A-ATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACGAGAGTGCTTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424770" ref_strand="+" ref_description="SGN-E424770 [STM-44-G5]">
      <seq>gaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaactgttgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggagtgtctccagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactctatggtgaattactatcataacatgttgtgaacttacgtcttttttggttaacttgagagagtgtttaaactctcttaaatatgaatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttgtgtctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46558" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46258" g_stop="45591" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="677"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E424770" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46258" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTG-TTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>GAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCCAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTATGGTGAATTACTATCATAACATGTTGTGAACTTACGTCTTTTTTGGTTAACTTGAGAGAGTGTTTAAACTCTCTTAAATATG-A-ATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453130" ref_strand="+" ref_description="SGN-E453130 [cSTS-19-A1]">
      <seq>gaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaactgttgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggagtgtctccagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactctatggtgaattactatcataacatgttgtgaacttacgtcttttttggttaacttgagagagtgttaaactctcttaatatgaatgtctcttttcagtaaaaaacttaatgaaaagtgacagtgtgcttgtgtctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46558" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46258" g_stop="45591" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="674"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E453130" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46258" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>GAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCCAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTATGGTGAATTACTATCATAACATGTTGTGAACTTACGTCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTT-AATATG-A-ATGTCTCTTTTCAGTAAAAAACTT-AATGAAAAGTGACAGTGTGCTTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572320" ref_strand="-" ref_description="SGN-E572320 [31455]">
      <seq>aagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaactgttgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggagtgtctccagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactctatggtgaattactatcataacatgttgtgaacttacgtcttttttggttaacttgagagagtgtttaaactctcttaaatatgaatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttgtgtctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46325" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46025" g_stop="45591" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="447"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E572320" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572320" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46025" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTG-TTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>AAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCCAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTATGGTGAATTACTATCATAACATGTTGTGAACTTACGTCTTTTTTGGTTAACTTGAGAGAGTGTTTAAACTCTCTTAAATATG-A-ATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226739" ref_strand="+" ref_description="SGN-E226739 [cLEL-26-L5](-)">
      <seq>agaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46292" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45992" g_stop="45591" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="420"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E226739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45992" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>AGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224415" ref_strand="+" ref_description="SGN-E224415 [cLEL-27-L24](-)">
      <seq>atcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46283" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45983" g_stop="45591" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="411"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E224415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45983" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>ATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224915" ref_strand="+" ref_description="SGN-E224915 [cLEL-27-L24](-)">
      <seq>tacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacncggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccagtgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatggtgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgacagtgtgcttatgtctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46270" stop="45290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45970" g_stop="45591" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="398"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E224915" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45970" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</genome_strand>
        <mrna_strand>TACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACNCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCAGTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGGTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308375" ref_strand="+" ref_description="SGN-E308375 [cLEY-25-D18]">
      <seq>agtggcagccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacatcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcaaactctttttttgctttatggcgaattactatcataatatgttgtgaactcacatctttgttggttaacttgagagagtgttacactatctcaaatatgaatatgtctcttttcagcgaaaaactgcaatgaaaagtgacagtgtgcttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46324" stop="45292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46024" g_stop="45592" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E308375" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46024" e_stop="45592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTC</genome_strand>
        <mrna_strand>AGTGGCAGCCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACATCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAAACTCTTTTTTTGCTTTATGGCGAATTACTATCATAATATGTTGTGAACTCACATCTTTGTTGGTTAACTTGAGAGAGTGTTACACTATCTCAAATATGAATATGTCTCTTTTCAGCGAAAAACTGCAATGAAAAGTGACAGTGTGCTTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704185" ref_strand="+" ref_description="SGN-E704185 [FA23CD01]">
      <seq>cataagcacactgtcacttttcatttaagttttttactgaaaagagacatattcatatttaagagagtttaacactctctcaagttaaccaaaaaagatgtaagttcacaacatattatgatagtaattcaccataaagcaaaaaaagaatctgaaaaatagcactagacaagcattcacaactggtctttttttctggcaagcatctagcagattggaagaggagcaccattccagctcttgagacactccaacaatggatcaatgatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggtgatcgaactttttcacctgtcaaaagttctgatccaagttcttgtctcaccaacctgtacaatggatatgatctgcattctgtgatcctgttaggaattgcagggtttccactttcaacaacagctcttgcactctcaacttctttaggcaacacggcctttaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcagggatcatcagcataggcaaacacgtattccctgtccacaactcgaagcaattccttctcgcagaatcttgcaggatgaagttcaccattagcacccattgtcaaagttctcttagctacttggctcactgtgttcttgacagcactcctcaagttttcctccaaatgccttaagtcgatagcttggcaaagcgccacgagataggttgatgacattagctttcagatgtctacagcctcagcgggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45294" stop="46753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45594" g_stop="46454" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="861" r_length="861" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E704185" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45594" e_stop="46454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCCTCAGCGGTTTTC</genome_strand>
        <mrna_strand>CATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTTCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTTCAGATGTCTACAGCCTCAGCGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208022" ref_strand="+" ref_description="SGN-E208022 [cLEC-34-K9]">
      <seq>ataagcacactgtcacttttcatttaagttttttactgaaaagagacatattcatatttaagagagtttaacactctctcaagttaaccaaaaaagatgtaagttcacaacatattatgatagtaattcaccataaagcaaaaaaagaatctgaaaaatagcactagacaagcattcacaactggtctttttttctggcaagcatctagcagattggaagaggagcaccattccagctcttgagacactccaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45295" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45595" g_stop="45852" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E208022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45595" e_stop="45852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATG</genome_strand>
        <mrna_strand>ATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600551" ref_strand="+" ref_description="SGN-E600551 [53565]">
      <seq>gcacactgtcacttttcatttaagttttttactgaaaagagacattcatatttaagagagtttaaacactctctcaagttaccaaaaaagacgtaagttcacaacatgttatgatagtaattcaccatagagtaaaaaaagaatctgaaaaatagcactagacaagcattaacaactggtcctttatctggcaaacatttagcagattggaagaggagcaccattccagctctggagacactccaacaatggatcaataatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggcgatcgaactttttcacctgtcaacagttctgatccaagttcttgtctcaccaacttgtacaatggatatgatctgcattctgtgatcctgttaggaattgaagggttgccactttcaagaacagctcttgcactctcaacttctttaggcaacattgccttcaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattattcaattgctgatcaaccaggacttgtctcagcttctgcatcaaagggtaagttgaactgcagggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45299" stop="46512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45599" g_stop="46212" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E600551" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45599" e_stop="46212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTT-AACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCAT</genome_strand>
        <mrna_strand>GCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGAC--ATTCATATTTAAGAGAGTTTAAACACTCTCTCAAGTT-ACCAAAAAAGACGTAAGTTCACAACATGTTATGATAGTAATTCACCATAGAGTAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTC-CTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTGGAGACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAGTTCTGATCCAAGTTCTTGTCTCACCAACTTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGAAGGGTTGCCACTTTCAAGAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACATTGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTATTCAATTGCTGATCAACCAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAAGTTGAACTGCAGGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254827" ref_strand="-" ref_description="SGN-E254827 [cLEG-33-O24]">
      <seq>gagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttggtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaaaaaaaaaaaaaaactcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46348" stop="45323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46048" g_stop="45601" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E254827" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254827" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46048" e_stop="45601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTT-GTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGT</genome_strand>
        <mrna_strand>GAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAAAAAAAAAAAAAAACTCGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286569" ref_strand="+" ref_description="SGN-E286569 [cLES-12-G21]">
      <seq>agaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaacttaaatgaaaagtgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46479" stop="45305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46179" g_stop="45605" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E286569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46179" e_stop="45605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACA</genome_strand>
        <mrna_strand>AGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234201" ref_strand="+" ref_description="SGN-E234201 [cLEL-8-I8](-)">
      <seq>aagtggcaaccttgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46325" stop="45323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46025" g_stop="45611" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E234201" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46025" e_stop="45611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAA</genome_strand>
        <mrna_strand>AAGTGGCAACCTTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304497" ref_strand="+" ref_description="SGN-E304497 [cLEX-11-A19]">
      <seq>atttaagttttttactgaaaagagacatattcatatttaagagagtttaacactctctcaagttaaccaaaaaagatgtaagttcacaacatattatgatagtaattcaccataaagcaaaaaaagaatctgaaaaatagcactagacaagcattcacaactggtctttttttctggcaagcatctagcagattggaagaggagcaccattccagctcttgagacactccaacaatggatcaatgatctgtccattgcacattgctgtgaacaccttgtcgatctcctcaccgggtgatcgaactttttcacctgtcaaaagttctgatccaagttcttgtctcaccaacctgtacaatggatatgatctgcattctgtgatcctgttaggaattgcagggttgccactttcaacaacagctcttgcactctcaacttctttaggcaacacggcctttaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45316" stop="46465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45616" g_stop="46165" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45616" e_stop="46165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGAC</genome_strand>
        <mrna_strand>ATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613915" ref_strand="+" ref_description="SGN-E613915 [63695]">
      <seq>gacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactcttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgtttaaactctcttaaatatgaatatctcttttcagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46232" stop="45323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45932" g_stop="45618" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E613915" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45932" e_stop="45618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCT-TTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTG-TTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAA</genome_strand>
        <mrna_strand>GACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTTAAACTCTCTTAAATATGAATA--TCTCTTTTCAGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711810" ref_strand="+" ref_description="SGN-E711810 [FB03AC03]">
      <seq>cttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaatatgaatatgtctcttttcagtaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46658" stop="45321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46358" g_stop="45621" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E711810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46358" e_stop="45621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACT</genome_strand>
        <mrna_strand>CTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590477" ref_strand="+" ref_description="SGN-E590477 [44073]">
      <seq>actgaaaagagatattcatatttaagagagtttaaacactctctcaagttaaccaaaaaagatgtaagttcacaacatattatgatagtaattcaccataagagtaaaaaaagaatctgaaaaatagcactagacaagcattaacaactggtcctttatctggcaaacatttagcagattggaagaggagcaccattccagctcttgagacactccaacaatggatcaataatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggcgatcgaactttttcacctgtcaacagttctgatccaagttcttgtctcaccaacctgtacaatggatatgatctgcattctgtgatcctgttaggaattgcagggttgccactttcaagatcagctcttgcactctcaacttctttaggcaacacagccttcaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggttgaactgcagggatcatcagcataggcaaacacgtattccctgtccacgactcgaagcaattccttctcgcagaatcttgcaggatgaagttcaccattagcacccattgtcaaagttctcttagctacttggctcactgtgttcttgacagcattcctcaagttttcctccaaaatgccttaaagtcgatagcttggccaaagtgccacgagatagcgttgatgacattagcttcaagatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45329" stop="46735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45629" g_stop="46435" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E590477" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45629" e_stop="46435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAGAGACATATTCATATTTAAGAGAGTTT-AACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAA-AGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCC-AAATGCCTT-AAGTCGATAGCTTGG-CAAAGCGCCACGAGATAG-GTTGATGACATTAGCTTCAAGATGTC</genome_strand>
        <mrna_strand>ACTGAAAAGAG--ATATTCATATTTAAGAGAGTTTAAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAGAGTAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTC-CTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAAGATCAGCTCTTGCACTCTCAACTTCTTTAGGCAACACAGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTTGAACTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACGACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCATTCCTCAAGTTTTCCTCCAAAATGCCTTAAAGTCGATAGCTTGGCCAAAGTGCCACGAGATAGCGTTGATGACATTAGCTTCAAGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304372" ref_strand="+" ref_description="SGN-E304372 [cLEX-12-J4]">
      <seq>tgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcgtgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgctcgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagatctttttttgctttatggtgaattactatcataatatgttgtgaacttacatctttattggttaacttgagagagtgttaaactctcttaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46504" stop="45347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46204" g_stop="45647" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304372" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46204" e_stop="45647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATG</genome_strand>
        <mrna_strand>TGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCGTGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTCGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGA-TCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTATTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349491" ref_strand="+" ref_description="SGN-E349491 [cTOS-1-I1]">
      <seq>gaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46478" stop="45349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46178" g_stop="45649" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E349491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46178" e_stop="45649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATA</genome_strand>
        <mrna_strand>GAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354605" ref_strand="+" ref_description="SGN-E354605 [cTOS-17-H21]">
      <seq>gaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatcttttttggttaacttgagagagtgttaaactctcttaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46478" stop="45349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46178" g_stop="45649" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E354605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46178" e_stop="45649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATA</genome_strand>
        <mrna_strand>GAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739096" ref_strand="+" ref_description="SGN-E739096 [LC16AD12]">
      <seq>gtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttggggcggatgtcatcaacctatctcgtggtgctttgccaaaataacgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattctttttttgctttatggtgaattactatcataatatgttgtgaacttacatctttttttggttaacttgagagagtgttaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46806" stop="45357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46506" g_stop="45657" g_length="850"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E739096" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46506" e_stop="45657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATC-TTTTTTGGTTAACTTGAGAGAGTGTTAAACTCT</genome_strand>
        <mrna_strand>GTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGGGGCGGATGTCATCAACCTATCTCGTGGTGCTTTGCCAAAATAACGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464334" ref_strand="+" ref_description="SGN-E464334 [cPRO-17-N23]">
      <seq>cctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaactgttgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagattattgatccattgttggagtgtctccagagctggaatggtgctcctcttccaatctgctaaatgtttgccagataaaggaccagttgttaatgcttgtctagtgctatttttcagattctttttttactctatggtgattactatcataacatgttgtgaacttacgtcttttttggttaacttgagagagtgtttaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46710" stop="45359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46410" g_stop="45659" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E464334" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46410" e_stop="45659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTG-TTAAACT</genome_strand>
        <mrna_strand>CCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATTATTGATCCATTGTTGGAGTGTCTCCAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAAATGTTTGCCAG-ATAAAGGACCAGTTGTTAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTACTCTATGGTG-ATTACTATCATAACATGTTGTGAACTTACGTCTTTTTTGGTTAACTTGAGAGAGTGTTTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304219" ref_strand="+" ref_description="SGN-E304219 [cLEX-6-J11]">
      <seq>ccctttgatgcagaagctgagacaagtccttgttgatcatgctatgaagaatggtgaaagtgagaagaatgtgaacaggtcaatcttccaaaagattgtagctttcgaggacgaattaatggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcggatcatatccattgtacaggtgggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaatgtgttcacagcaatgtgcaacggacagatcattgatccattgtcggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaaagaccagttgtgaatgcttgtctagtgctatttttcagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46490" stop="45441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46190" g_stop="45741" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304219" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46190" e_stop="45741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTC</genome_strand>
        <mrna_strand>CCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCTATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGGTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAATGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCGGATCATATCCATTGTACAGGTGGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAATGTGTTCACAGCAATGTGCAACGGACAGATCATTGATCCATTGTCGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346721" ref_strand="+" ref_description="SGN-E346721 [cTOF-28-P11]">
      <seq>gtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtaccaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatnccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaagaccagttgtgaatgcttgtctagtgctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46702" stop="45449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46402" g_stop="45749" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E346721" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46402" e_stop="45749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTA-CAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGAT-CCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTT</genome_strand>
        <mrna_strand>GTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACCAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATNCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAG-AAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213330" ref_strand="+" ref_description="SGN-E213330 [cLEC-71-H24]">
      <seq>atgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgntcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46815" stop="45492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46515" g_stop="45792" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E213330" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46515" e_stop="45792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGC</genome_strand>
        <mrna_strand>ATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGNTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575586" ref_strand="+" ref_description="SGN-E575586 [35234]">
      <seq>gctaatgtcatcacctatctcgtggcactttgccaagcaatggactttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgcagaagctgagacaggtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatatcaacagctcaatcttccaaaagattggagctttcgaggacgaattaaatgctgtgttgcctaaagaagttgagagtgcaagagctcttcttgaaagtggcaacccttcgattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggaacagaactgttgacaggtgaaaaagttcgatcgccgggcgaggagattgaaaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgtagatgtttgtccagtgttaatttttcaaaattcttttttttaccttttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46724" stop="45489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46424" g_stop="45794" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E575586" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46424" e_stop="45794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTT-AAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTT</genome_strand>
        <mrna_strand>GCTAATGTCATC-ACCTATCTCGTGGCACTTTGCCAAGCAATGGACTTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGCAGAAGCTGAGACAGGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATATCAACAGCTCAATCTTCCAAAAGATTGGAGCTTTCGAGGACGAATTAAATGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTCTTCTTGAAAGTGGCAACCCTTCGATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGAACAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCGGGCGAGGAGATTGAAAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTG-TAGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286786" ref_strand="+" ref_description="SGN-E286786 [cLES-14-P18]">
      <seq>ttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46729" stop="45524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46429" g_stop="45824" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E286786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46429" e_stop="45824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</genome_strand>
        <mrna_strand>TTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336129" ref_strand="+" ref_description="SGN-E336129 [cTOE-12-G1]">
      <seq>gtgctgccaagaacacagtgagccaagttgctaatagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtctgcctatgctgatgatccctgcacctccacctaccctttgatgcataacctgagacaagaccttgttgatcatgcaatgaagaatggtgaaagtgaaaagagatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgctgttgaaagtggcaaccctgccattcctaacaggatcacagaatgcacatcatatccattgtgcacgttggcgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcaccccgtgaggagatcgacacggtgttcacatcaatgtgcaatggacagatcatggatccattgttggagtgtctcaagagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46650" stop="45524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46350" g_stop="45824" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E336129" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46350" e_stop="45824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGA-ATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</genome_strand>
        <mrna_strand>GTGCTGCCAAGAACACAGTGAGCCAAGTTGCTAATAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTCTGCCTATGCTGATGATCCCTGCACCTCCACCTACCCTTTGATGCATAACCTGAGACAAGACCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAAAAGAGATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGCTGTTGAAAGTGGCAACCCTGCCATTCCTAACAGGATCACAGAATGCACATCATATCCATTGTGCACGTTGGCGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCCGTGAGGAGATCGACACGGTGTTCACATCAATGTGCAATGGACAGATCATGGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308905" ref_strand="+" ref_description="SGN-E308905 [cLEY-23-D12]">
      <seq>agggaattgcttcgagttgtggacagggaatacgtgtttgcctagggtgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46561" stop="45527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46261" g_stop="45827" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E308905" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46261" e_stop="45827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGG</genome_strand>
        <mrna_strand>AGGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTAGGGTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242042" ref_strand="+" ref_description="SGN-E242042 [cLED-27-L1]">
      <seq>ggcgctttgccaagctattgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaacaatgtgaacagctcaatcttccaaaagattgtagctttctaggacgaattgaaggccgcgttgcctaaaaaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46700" stop="45538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46400" g_stop="45838" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E242042" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46400" e_stop="45838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTC</genome_strand>
        <mrna_strand>GGCGCTTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAACAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCTAGGACGAATTGAAGGCCGCGTTGCCTAAAAAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235342" ref_strand="+" ref_description="SGN-E235342 [cLED-11-D5]">
      <seq>ttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46768" stop="45551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46468" g_stop="45851" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E235342" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46468" e_stop="45851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCA</genome_strand>
        <mrna_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304395" ref_strand="+" ref_description="SGN-E304395 [cLEX-12-A11]">
      <seq>agcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46760" stop="45553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46460" g_stop="45853" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46460" e_stop="45853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</genome_strand>
        <mrna_strand>AGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279008" ref_strand="+" ref_description="SGN-E279008 [cLER-2-H8]">
      <seq>tttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46610" stop="45553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46310" g_stop="45853" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E279008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46310" e_stop="45853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</genome_strand>
        <mrna_strand>TTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242040" ref_strand="+" ref_description="SGN-E242040 [cLED-27-J21]">
      <seq>taatggggaactatgtcctgcatgattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46580" stop="45554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46295" g_stop="45854" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E242040" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46295" e_stop="45854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGAT</genome_strand>
        <mrna_strand>TAATGGGGAACTATGTCCTGCATGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378130" ref_strand="+" ref_description="SGN-E378130 [TUS-21-L18]">
      <seq>caaggaaaaccgctgaggctgtagtacatcttgaagctaatgtacatcaacctatctagtggcgcttagccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgagtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaaactgagacaagtccttgttgatcatgcaatgaacaatggtgaaagtgacaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46758" stop="45607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46458" g_stop="45907" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E378130" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46458" e_stop="45907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAAACCGCTGAGGCTGTAG-ACATCTTGAAGCTAATGT-CATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCG</genome_strand>
        <mrna_strand>CAAGGAAAACCGCTGAGGCTGTAGTACATCTTGAAGCTAATGTACATCAACCTATCTAGTGGCGCTTAGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGAGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAACTGAGACAAGTCCTTGTTGATCATGCAATGAACAATGGTGAAAGTGACAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241007" ref_strand="+" ref_description="SGN-E241007 [cLED-24-F20]">
      <seq>ttgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46555" stop="45608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46255" g_stop="45908" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E241007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46255" e_stop="45908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCC</genome_strand>
        <mrna_strand>TTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203911" ref_strand="+" ref_description="SGN-E203911 [cLEC-17-N21]">
      <seq>ttcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46778" stop="45630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46478" g_stop="45930" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E203911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46478" e_stop="45930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGAC</genome_strand>
        <mrna_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453939" ref_strand="+" ref_description="SGN-E453939 [cSTS-21-L9]">
      <seq>ccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46906" stop="45636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46606" g_stop="45936" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E453939" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46606" e_stop="45936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACT</genome_strand>
        <mrna_strand>CCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308017" ref_strand="+" ref_description="SGN-E308017 [cLEY-14-C24]">
      <seq>tccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46812" stop="45642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46512" g_stop="45942" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E308017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46512" e_stop="45942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATC</genome_strand>
        <mrna_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240427" ref_strand="+" ref_description="SGN-E240427 [cLED-25-F18]">
      <seq>tttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatctttcaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46695" stop="45646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46395" g_stop="45946" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E240427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46395" e_stop="45946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTG</genome_strand>
        <mrna_strand>TTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTTCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243675" ref_strand="+" ref_description="SGN-E243675 [cLED-34-J16]">
      <seq>ggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46700" stop="45663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46400" g_stop="45963" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E243675" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46400" e_stop="45963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTT</genome_strand>
        <mrna_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467074" ref_strand="+" ref_description="SGN-E467074 [cPRO-26-P20]">
      <seq>tggactcaagggagctgaagttgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcaccaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctattgacttaatgcatttggaggaaaacttgaggaatgctgtcaagaacacagtgagccaaatagctaatagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcaagaaggaattgcttctagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcacaagctgagacaaggccttggtgatcatgcaatgaagaatggtgaaagtgagtcgaatgtgaacagctcaatcttccaaaagattgtaactttcgaggaccaattgaatgctgtgttgcctaaagaagttgagagtgcaagaactatgcttgaaagtggcagccctgtacttcctatcaggataacagaatgctgatcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46892" stop="45676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46592" g_stop="45976" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E467074" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46592" e_stop="45976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATC</genome_strand>
        <mrna_strand>TGGACTCAAGGGAGCTGAAGTTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCACCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATTGACTTAATGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACAGTGAGCCAAATAGCTAATAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCAAGAAGGAATTGCTTCTAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCACAAGCTGAGACAAGGCCTTGGTGATCATGCAATGAAGAATGGTGAAAGTGAGTCGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAACTTTCGAGGACCAATTGAATGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAACTATGCTTGAAAGTGGCAGCCCTGTACTTCCTATCAGGATAACAGAATGCTGATCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299406" ref_strand="+" ref_description="SGN-E299406 [cLET-43-I4]">
      <seq>gcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46834" stop="45678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46534" g_stop="45978" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E299406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46534" e_stop="45978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</genome_strand>
        <mrna_strand>GCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304857" ref_strand="+" ref_description="SGN-E304857 [cLEX-10-C17]">
      <seq>tccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46812" stop="45678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46512" g_stop="45978" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46512" e_stop="45978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</genome_strand>
        <mrna_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242924" ref_strand="+" ref_description="SGN-E242924 [cLED-31-B19]">
      <seq>ttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttccaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46768" stop="45678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46468" g_stop="45978" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E242924" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46468" e_stop="45978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</genome_strand>
        <mrna_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCCAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201367" ref_strand="+" ref_description="SGN-E201367 [cLEC-4-M22]">
      <seq>gatctgcattctgtgatcctgttaggaattgcagggttgccactttcaacaacagctcttgcactctcaacttctttaggcaacacggcctttaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcagggatcatcagcataggcaaacacgtattccctgtccacaactcgaagcaattccttctcgcagaatcttgcaggatgaagttcaccattagcacccattgtcaaagttctcttagctacttggctcactgtgttcttgacagcactcctcaagttttcctccaaatgccttaagtcgatagcttggcaaagcgccacgagataggttgatgacattagcttcaagatgtctacagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="45681" stop="46742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45981" g_stop="46442" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E201367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45981" e_stop="46442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCC</genome_strand>
        <mrna_strand>GATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478056" ref_strand="+" ref_description="SGN-E478056 [cSTD-2-N12]">
      <seq>cgacaatccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggcacccctattggtgtctccatggataatacacgattggcccttgcatcaattggtaaattgatgtttgcccaattctcagagcttgtcaacgactattacaacaacgggttgccatctaatctgacagcaggaaggaatccaagcttggactatggtttcaagggcgctgaaattgcgatggcttcttattgctcggaacttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttgggattaatctcagccaggaaaacagccgaggctgttgatatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatagacttgcggcatttggaggagaacttgaagagtgctgtcaagaacacagttagccaagtagctaagagaaccttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgcttcgagtcgtggacagggaatacttgtttgcctatgcagatgacccctgcagctccaactaccctttgatgcagaagctgagacaagtccttgttgatcaagcaatgaagaatggtgaaagtgagaagcatttcaacagctcaatcttncaaaagattggnagcttcgaggatgaattaattgctgtgttgcctaaagaagttgagagtgtaagagctgttgttgaaagtggcaacccttcattcctaacaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47105" stop="45696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46805" g_stop="45996" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E478056" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46805" e_stop="45996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATT-GTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGAT</genome_strand>
        <mrna_strand>CGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACACGATTGGCCCTTGCATCAATTGGTAAATTGATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTATTACAACAACGGGTTGCCATCTAATCTGACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGCGCTGAAATTGCGATGGCTTCTTATTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTGGGATTAATCTCAGCCAGGAAAACAGCCGAGGCTGTTGATATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATAGACTTGCGGCATTTGGAGGAGAACTTGAAGAGTGCTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACCTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTTCGAGTCGTGGACAGGGAATACTTGTTTGCCTATGCAGATGACCCCTGCAGCTCCAACTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCAAGCAATGAAGAATGGTGAAAGTGAGAAGCATTTCAACAGCTCAATCTTNCAAAAGATTGGNAGC-TTCGAGGATGAATTAATTGCTGTGTTGCCTAAAGAAGTTGAGAGTGTAAGAGCTGTTGTTGAAAGTGGCAACCCTTC-ATTCCTAACAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592056" ref_strand="+" ref_description="SGN-E592056 [45781]">
      <seq>gtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatctttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaaagtggcaaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47086" stop="45714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46786" g_stop="46013" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E592056" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46786" e_stop="46013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC-TTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTG-AAAGTGGCAACCCT</genome_strand>
        <mrna_strand>GTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAAGTGGCAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739672" ref_strand="+" ref_description="SGN-E739672 [LC18BF06]">
      <seq>catccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47153" stop="45720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46853" g_stop="46020" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E739672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46853" e_stop="46020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGG</genome_strand>
        <mrna_strand>CATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474681" ref_strand="+" ref_description="SGN-E474681 [cSTB-37-I20]">
      <seq>caagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgccttgccaagctattgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagtcgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46905" stop="45774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46605" g_stop="46073" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E474681" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46605" e_stop="46073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTA</genome_strand>
        <mrna_strand>CAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCCTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGTCGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401073" ref_strand="+" ref_description="SGN-E401073 [PPC-3-C1]">
      <seq>gttcagagtgccgagcaacacaaccaagatgtgaactccttaggcttaatctcagcaaggaaaacagctgaggctgtcgacatcttaaagctaatgtcatcaacctatctcgtggcactttgccaagctatagacttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgcagaagctgagacaggtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatatcaacagctcaatcttccaaaagattggagctttcgaggacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46813" stop="45776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46513" g_stop="46076" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E401073" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46513" e_stop="46076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAA</genome_strand>
        <mrna_strand>GTTCAGAGTGCCGAGCAACACAACCAAGATGTGAACTCCTTAGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTCGACATCTTAAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAAGCTATAGACTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGCAGAAGCTGAGACAGGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATATCAACAGCTCAATCTTCCAAAAGATTGGAGCTTTCGAGGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739118" ref_strand="+" ref_description="SGN-E739118 [LC16AG07]">
      <seq>ctctacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46683" stop="45783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46384" g_stop="46083" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E739118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46384" e_stop="46083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGA</genome_strand>
        <mrna_strand>CTCTACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460149" ref_strand="+" ref_description="SGN-E460149 [cPRO-30-G15]">
      <seq>cgacgtttcaagaaacaaggccttacatggtggcaacttccaaggcacccctattggtgtctccatggataatacacgattggcccttgcatcaattggtaaattgatgtttgcccaattctcagagcttgtcaacgactattacaacaacgggttgccatctaatctgacagcaggaaggaatccaagcttggactatggtttcaagggcgctgaaattgcgatggcttcttattgctcggaacttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttgggattaatctcagccaggaaaacagccgaggctgttgatatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatagacttgcggcatttggaggagaacttgaagagtgctgtcaagaacacagttagccaagtagctaagagaaccttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgcttcgagtcgtggacagggaatacttgtttgcctatgcagatgacccctgcagctccaactaccctttgatgcagaagctgagacnagtccttgttgatncagcaatgaagaatggntgaagtgagaagcatttcaacagctcaatcttcccaaagattggagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47090" stop="45785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46790" g_stop="46085" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E460149" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46790" e_stop="46085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTC</genome_strand>
        <mrna_strand>CGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACACGATTGGCCCTTGCATCAATTGGTAAATTGATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTATTACAACAACGGGTTGCCATCTAATCTGACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGCGCTGAAATTGCGATGGCTTCTTATTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTGGGATTAATCTCAGCCAGGAAAACAGCCGAGGCTGTTGATATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATAGACTTGCGGCATTTGGAGGAGAACTTGAAGAGTGCTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACCTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTTCGAGTCGTGGACAGGGAATACTTGTTTGCCTATGCAGATGACCCCTGCAGCTCCAACTACCCTTTGATGCAGAAGCTGAGACNAGTCCTTGTTGATNCAGCAATGAAGAATGGNTGAAGTGAGAAGCATTTCAACAGCTCAATCTTCCCAAAGATTGGAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450663" ref_strand="+" ref_description="SGN-E450663 [cSTS-10-E11]">
      <seq>attggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47012" stop="45799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46712" g_stop="46099" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E450663" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46712" e_stop="46099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAA</genome_strand>
        <mrna_strand>ATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303368" ref_strand="+" ref_description="SGN-E303368 [cLEX-2-B23]">
      <seq>agatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcataagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46787" stop="45804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46487" g_stop="46104" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E303368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46487" e_stop="46104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTT</genome_strand>
        <mrna_strand>AGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCATAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319164" ref_strand="+" ref_description="SGN-E319164 [cTOB-16-G24]">
      <seq>tcaagggagctgaaattgcaatggcttcttactgctcagaacttcaatacctggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaacatgtgaattcattgggcttaatctcatcacggaaaaccgctgaagctgtacacatcttgaagctaatgtcatcaacctatgtcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaagagtgctgtcaagaacacagtgagccaagtagctaacagaactttgacaatgggtgctaatggcgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcaaaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46887" stop="45805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46587" g_stop="46105" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E319164" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46587" e_stop="46105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</genome_strand>
        <mrna_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATACCTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAACATGTGAATTCATTGGGCTTAATCTCATCACGGAAAACCGCTGAAGCTGTACACATCTTGAAGCTAATGTCATCAACCTATGTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAAGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAACAGAACTTTGACAATGGGTGCTAATGGCGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAAAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207605" ref_strand="+" ref_description="SGN-E207605 [cLEC-32-C18]">
      <seq>tcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46887" stop="45805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46587" g_stop="46105" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E207605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46587" e_stop="46105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</genome_strand>
        <mrna_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307792" ref_strand="+" ref_description="SGN-E307792 [cLEY-16-N22]">
      <seq>caagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtgcaaagtgctgatcaacacaaccaacatgtgaatacattgggcttaatctcaacaaggaaaaccgctgaggctgttgacatattgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacattgagccaagtatctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttctagttgtggacaaggaatacatgtttgcctatgctgatgatccctgcagctgcacctaccctttgatgcacaagctgaaacaagttcttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46886" stop="45805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46586" g_stop="46105" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E307792" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46586" e_stop="46105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</genome_strand>
        <mrna_strand>CAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTGCAAAGTGCTGATCAACACAACCAACATGTGAATACATTGGGCTTAATCTCAACAAGGAAAACCGCTGAGGCTGTTGACATATTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACATTGAGCCAAGTATCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCTAGTTGTGGACAAGGAATACATGTTTGCCTATGCTGATGATCCCTGCAGCTGCACCTACCCTTTGATGCACAAGCTGAAACAAGTTCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304765" ref_strand="+" ref_description="SGN-E304765 [cLEX-11-N4]">
      <seq>tcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46852" stop="45806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46552" g_stop="46106" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46552" e_stop="46106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</genome_strand>
        <mrna_strand>TCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456122" ref_strand="+" ref_description="SGN-E456122 [cSTS-28-J7]">
      <seq>tgcagtgaaccgcaatccattgatcgatgtttcaagaaaccaggccttacaccggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttgcctatgctgatgacccatgcagctgcacctaccctttgatgcagaagctgagacaagtccttggttgatcatgcaatgaagaatgggtgaaagtgagacgaatgtgaacagctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47112" stop="45807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46814" g_stop="46107" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E456122" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46814" e_stop="46107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACAC-GGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTT-GTTGATCATGCAATGAAGAAT-GGTGAAAGTGAGAAGAATGTGAACAGCTCAAT</genome_strand>
        <mrna_strand>TGCAGTGAACCGCAATCCATTGATCGATGTTTCAAGAAACCAGGCCTTACACCGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTGCCTATGCTGATGACCCATGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGGTTGATCATGCAATGAAGAATGGGTGAAAGTGAGACGAATGTGAACAGCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307128" ref_strand="+" ref_description="SGN-E307128 [cLEY-15-P8]">
      <seq>cttggattatggactcaagggagctgaaattgcaatggctgcttactgctcagaacgtcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcanaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46901" stop="45810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46601" g_stop="46110" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E307128" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46601" e_stop="46110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTC</genome_strand>
        <mrna_strand>CTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTGCTTACTGCTCAGAACGTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCANAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326848" ref_strand="+" ref_description="SGN-E326848 [cTOC-25-O3]">
      <seq>agagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47128" stop="45846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46829" g_stop="46146" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E326848" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46829" e_stop="46146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAAT</genome_strand>
        <mrna_strand>AGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281116" ref_strand="+" ref_description="SGN-E281116 [cLER-7-K24]">
      <seq>ttcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagatgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46778" stop="45868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46478" g_stop="46168" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E281116" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46478" e_stop="46168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGAC</genome_strand>
        <mrna_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGATGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463119" ref_strand="+" ref_description="SGN-E463119 [cPRO-13-L19]">
      <seq>gttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgaccaaccatgttcagagtgccgagcaacacaaccaagatgtgaactccttaggcttaatctcagcaaggaaaacagctgaggctgtcgacatcttaaagctaatgtcatcaacctatctcgtggcactttgccaagctatagacttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgcagaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47202" stop="45872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46902" g_stop="46172" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E463119" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46902" e_stop="46172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTG</genome_strand>
        <mrna_strand>GTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACCAACCATGTTCAGAGTGCCGAGCAACACAACCAAGATGTGAACTCCTTAGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTCGACATCTTAAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAAGCTATAGACTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGCAGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467009" ref_strand="+" ref_description="SGN-E467009 [cPRO-26-D22]">
      <seq>caagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgaccaaccatgttcagagtgccgagcaacacaaccaagatgtgaactccttaggcttaatctcagcaaggaaaacagctgaggctgtcgacatcttaaagctaatgtcatcaacctatctcgtggcactttgccaagctatagacttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47209" stop="45880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46909" g_stop="46180" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E467009" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46909" e_stop="46180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGC</genome_strand>
        <mrna_strand>CAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACCAACCATGTTCAGAGTGCCGAGCAACACAACCAAGATGTGAACTCCTTAGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTCGACATCTTAAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAAGCTATAGACTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283674" ref_strand="+" ref_description="SGN-E283674 [cLES-1-H12]">
      <seq>aggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46916" stop="45890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46616" g_stop="46190" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E283674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46616" e_stop="46190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTAC</genome_strand>
        <mrna_strand>AGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475484" ref_strand="+" ref_description="SGN-E475484 [cSTB-40-M3]">
      <seq>caagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctattgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46905" stop="45897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46605" g_stop="46197" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E475484" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46605" e_stop="46197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTC</genome_strand>
        <mrna_strand>CAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290404" ref_strand="+" ref_description="SGN-E290404 [cLES-20-D15]">
      <seq>agaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46850" stop="45899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46550" g_stop="46199" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E290404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46550" e_stop="46199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGC</genome_strand>
        <mrna_strand>AGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265996" ref_strand="+" ref_description="SGN-E265996 [cLEI-6-B2]">
      <seq>attccttgcaaatccagtgactaaccatgtccaaagtgctgatcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46841" stop="45903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46541" g_stop="46203" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E265996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46541" e_stop="46203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTG</genome_strand>
        <mrna_strand>ATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGATCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209052" ref_strand="+" ref_description="SGN-E209052 [cLEC-38-D14]">
      <seq>aatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46909" stop="45904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46609" g_stop="46204" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E209052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46609" e_stop="46204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCT</genome_strand>
        <mrna_strand>AATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201694" ref_strand="+" ref_description="SGN-E201694 [cLEC-11-L22]">
      <seq>attatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgttcgcctatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46896" stop="45913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46596" g_stop="46213" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E201694" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46596" e_stop="46213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTG</genome_strand>
        <mrna_strand>ATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTCGCCTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467450" ref_strand="+" ref_description="SGN-E467450 [cSTB-49-C7]">
      <seq>gaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47246" stop="45961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46946" g_stop="46261" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E467450" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46946" e_stop="46261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGA</genome_strand>
        <mrna_strand>GAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325555" ref_strand="+" ref_description="SGN-E325555 [cTOC-15-G10]">
      <seq>agagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacnatgggtgctaatggtgaacttcatcctgcaagattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47128" stop="45966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46829" g_stop="46266" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E325555" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46829" e_stop="46266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTG</genome_strand>
        <mrna_strand>AGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACNATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215107" ref_strand="+" ref_description="SGN-E215107 [cLEC-78-N11]">
      <seq>gagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaagaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47122" stop="45975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46822" g_stop="46275" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E215107" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46822" e_stop="46275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGC</genome_strand>
        <mrna_strand>GAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAAGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208908" ref_strand="+" ref_description="SGN-E208908 [cLEC-51-F14]">
      <seq>gattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47120" stop="45992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46820" g_stop="46292" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E208908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46820" e_stop="46292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAAT</genome_strand>
        <mrna_strand>GATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214120" ref_strand="+" ref_description="SGN-E214120 [cLEC-80-B14]">
      <seq>cagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcnagaacacagtgagccaagtagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47311" stop="46018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47011" g_stop="46318" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E214120" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47011" e_stop="46318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTA</genome_strand>
        <mrna_strand>CAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCNAGAACACAGTGAGCCAAGTAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484955" ref_strand="+" ref_description="SGN-E484955 [cSTE-16-A15]">
      <seq>cagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgatcgagagggagattaactcagtgaacgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctattgacttaaggcatttggaggaaaacttgaagaatgctgtcaagaacacagtgagccaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47248" stop="46020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46948" g_stop="46320" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E484955" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46948" e_stop="46320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGC</genome_strand>
        <mrna_strand>CAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAGATTAACTCAGTGAACGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAATGCTGTCAAGAACACAGTGAGCCAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301663" ref_strand="+" ref_description="SGN-E301663 [cLEW-23-B11]">
      <seq>gaattcggcacgaggcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47112" stop="46028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46809" g_stop="46328" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="500" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E301663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46809" e_stop="46328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGC</genome_strand>
        <mrna_strand>TGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301998" ref_strand="+" ref_description="SGN-E301998 [cLEX-3-A6]">
      <seq>ggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaagctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46882" stop="46035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46582" g_stop="46335" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E301998" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46582" e_stop="46335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACAC</genome_strand>
        <mrna_strand>GGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAAGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323308" ref_strand="+" ref_description="SGN-E323308 [cTOB-28-L8]">
      <seq>tggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgcccagctatcgacttaaggcatttggaggaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47459" stop="46056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47159" g_stop="46356" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E323308" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47159" e_stop="46356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTT</genome_strand>
        <mrna_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCCAGCTATCGACTTAAGGCATTTGGAGGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698861" ref_strand="+" ref_description="SGN-E698861 [FA07DC09]">
      <seq>acacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcaaaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47338" stop="46059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47038" g_stop="46359" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E698861" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47038" e_stop="46359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAA</genome_strand>
        <mrna_strand>ACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAAAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304522" ref_strand="+" ref_description="SGN-E304522 [cLEX-11-M17]">
      <seq>tcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47266" stop="46078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46966" g_stop="46378" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46966" e_stop="46378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACT</genome_strand>
        <mrna_strand>TCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302638" ref_strand="+" ref_description="SGN-E302638 [cLEX-1-M15]">
      <seq>tttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcacaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtacacatcttgaagctaatgtcatcaacctatctcgtggcgctatgccaagctatcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47342" stop="46079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47042" g_stop="46379" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E302638" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47042" e_stop="46379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGAC</genome_strand>
        <mrna_strand>TTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCACAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTACACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTATGCCAAGCTATCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214424" ref_strand="+" ref_description="SGN-E214424 [cLEC-77-B5]">
      <seq>agaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47247" stop="46103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46947" g_stop="46403" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E214424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46947" e_stop="46403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTC</genome_strand>
        <mrna_strand>AGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320183" ref_strand="+" ref_description="SGN-E320183 [cTOB-21-C19]">
      <seq>tggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttncattccttgcaaatccagtgactaaccatgtcccaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaacgctgaggctgtagacatcttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47459" stop="46122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47159" g_stop="46422" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E320183" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47159" e_stop="46422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCT</genome_strand>
        <mrna_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTNCATTCCTTGCAAATCCAGTGACTAACCATGTCCCAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAA-CGCTGAGGCTGTAGACATCTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303723" ref_strand="+" ref_description="SGN-E303723 [cLEX-4-A15]">
      <seq>tgacacacatgttgaagcatcaccctggccagatagaagctgctgctattatggaacacattttggatggaagctcttatgtcaaggcaggtcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagcggcttgcacctcaaattgaagtcatccgtgcagcaactaacatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcacaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacagccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47340" stop="46143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47040" g_stop="46443" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E303723" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47040" e_stop="46443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGA</genome_strand>
        <mrna_strand>TGACACACATGTTGAAGCATCACCCTGGCCAGATAGAAGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGGTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGCGGCTTGCACCTCAAATTGAAGTCATCCGTGCAGCAACTAACATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCACAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAGCCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558686" ref_strand="+" ref_description="SGN-E558686 [18065]">
      <seq>atgaatggaaagcccgaattcactgactatttgacacaccaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatccgtgcagcaactaaaatgattgagagggagattaactcagtgaacgacaacccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaaaggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctctgcaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47371" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47071" g_stop="46452" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E558686" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47071" e_stop="46452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACGGAAAGCCTGAATTCACTGACTATTTGACACA-CAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAA</genome_strand>
        <mrna_strand>ATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACCAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAAATGATTGAGAGGGAGATTAACTCAGTGAACGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAAGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCTGCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266877" ref_strand="+" ref_description="SGN-E266877 [cLEI-7-A21]">
      <seq>ttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47193" stop="46160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46893" g_stop="46460" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E266877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46893" e_stop="46460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCA</genome_strand>
        <mrna_strand>TTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268405" ref_strand="+" ref_description="SGN-E268405 [cLEI-13-F15]">
      <seq>cttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47265" stop="46162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46965" g_stop="46462" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E268405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46965" e_stop="46462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCT</genome_strand>
        <mrna_strand>CTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316202" ref_strand="+" ref_description="SGN-E316202 [cTOA-23-A12]">
      <seq>acattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47283" stop="46201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46983" g_stop="46501" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E316202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46983" e_stop="46501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTG</genome_strand>
        <mrna_strand>ACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479048" ref_strand="+" ref_description="SGN-E479048 [cSTD-8-I6]">
      <seq>gatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggagagaaacttaatgctgaggaagcattccgcgtggctggtgttactggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaactaagatgattgagagggagatcaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcangaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47638" stop="46230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47338" g_stop="46531" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E479048" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47338" e_stop="46531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAA</genome_strand>
        <mrna_strand>GATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGAGAGAAACTTAATGCTGAGGAAGCATTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACTAAGATGATTGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCANGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209819" ref_strand="+" ref_description="SGN-E209819 [cLEC-52-P14]">
      <seq>cgttatgctcttcaatttttttcacagtggcttggacctcaaattgaggtcattcgtgcagcaactaagatgaccgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagatgggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcaaaacttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47185" stop="46240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46903" g_stop="46540" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E209819" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46903" e_stop="46540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAAT</genome_strand>
        <mrna_strand>CGTTATGCTCTTCAATTTTTTTCACAGTGGCTTGGACCTCAAATTGAGGTCATTCGTGCAGCAACTAAGATGACCGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATGGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAAAACTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200633" ref_strand="+" ref_description="SGN-E200633 [cLEC-9-E22]">
      <seq>ggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggaagctgaaattgcaatgngcttcttacttgcgtcagaacttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47175" stop="46240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46540" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E200633" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGG-AGCTGAAATTGCAATG-GCTTCTTAC-TGC-TCAGAACTTCAAT</genome_strand>
        <mrna_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAAGCTGAAATTGCAATGNGCTTCTTACTTGCGTCAGAACTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454129" ref_strand="+" ref_description="SGN-E454129 [cSTS-22-A2]">
      <seq>gttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54281" stop="46247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53981" g_stop="53862" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53861" i_stop="47268" i_length="6594">
            <donor d_prob="0.831" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47267" g_stop="47071" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="317" r_length="197" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47070" i_stop="46810" i_length="261">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46809" g_stop="46547" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="580" r_length="263" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E454129" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53981" e_stop="53862"/>
          <exon e_start="47267" e_stop="47071"/>
          <exon e_start="46809" e_stop="46547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTTAATCTTAAAAACAACATATTAGATGATTATCATTTAACATTAACAATAACCTACCCAATTTTATATTAAGATTTAACAATTTTTAATCACGCCCACTACGACAAAAACAGCTTTTAGCGATATTAAATATTGACATTGATAAACAGTGTTAAAGTTTTTACTGGTATTAGTTAAGTGTCATTAGAACCAATATCGCTAAAGACTTTAGCGGTAAAAATACATATTTAGCGGCAATTAAGAATTGACTTTCGCTAATGATCATTTTTACTATAGTGGCTTCGTCAAAGTGATTCATAGGTCATTTACGTAGTCATAAGTTTCTGCTATGGTAGTTTATAGTAAAACAACAATATCTTTTTTACTCCAAACTCAAAATAAGATAAACTCGGTGGCGTTGAAAAAAAATCCATAAAAATTTAACTTAATATCTCATAGACTACCTAATTCATTACGTAAGATATGATCATTTAAAGTTAACCTAACATCTTATATCAAAACTTAATCGATAAAAAATGATAGTTGGCAAAACAAAGAGTGTGGGGTCGGGATGACAATCAAGTGATATGGTTGGAGAAATGGTCACTTTCGTTAAAATTTATAATTTACTGTTCAATTTTTTTTAACGAAAGCTAAAGTACTAGTAGGTGATTTTTTTTAACGTACTAAAATATACATGCTTATATTAATGAAGATATCATATACGCATTTAAAATAATTGAAATATACGTAAATTAATTCGATCGTAAAATCATTAAAACATAATCTAGTCCACCCTGGCATGATAGAAGTATGTATTTATTACTCTTAAAAATAATTCTTGGTAGATTTTATGGACTTAAAGAGGACACGTTTGTCCACCCAATACACTTCAAAATAGTGTTTTTATTTTTAATTATGAAAGAATTTTAACTATTACTTAACTAACCATATAATTAATAGAAAAAATAAGTTAATATGCTATTGAAAGTTCAATTTTCTCTTAATAGATCAAAATAAACAGAGAATTTCATTTAATGGAAAGGTGCAATTTTTTAATGTATAATTTGAAATGGCTTAATATTACCTTTGTTATATTTTGGATTCATTCCTACTTTTGCTTTCGTATTTGTTTTTGTCATTAACGAAGTTTCAAGGAATATTCACAATAATTTACATAATTTTAAAATTGTGATCTAACATTTCTCAAAAGAATTACCAATTTGCTCAAAAAAATATTCTTAAGTTATGATTTGAAAGTGATATTCACTTTTGTTGCTTCCACTTCTTTGTTGATATTTCAAAAAGGCATATAATCAGGTAATAAGGAATGTCGTATTTTCATTAAATGATTCAAAAAATAAACATATTGTGCATGATGTTCGAATTTGAAATCTTTATGATGAATGTTGGACTTTGTAAATTATTAACTGAACCTATAATTTTGTGTCAAGTGATTCAAAATCTAAATATATACTTGAGAAAACCTTATATATACAATATAATTTTCTATCGAGGAGGTTTAGAGCTATCAAAACGGACTTAGCCCATGGGGCTGACCCAGCCCAATCTGTTATTAGGGTAGGATTGAGACAGAATTTTTCAAGTCAATCTAGAGCCTATAAGTTCGGCCCATATAAGTCCTTGGTCCTTGAGGCTTGAATGAAGTCGAGCCAGGATCGGCCGATGGGCCAATTTTTTTTATTCAAGGGTACAATACTCTCACTAGTATATAATATAATTACTTAAATACACGTTATATTGTAATATTATGACTTGTCAGATTTTGATATGTCGAGATACATGTATCTCGAACTATGTGGACTCAAAATTAGGTTAATTTGTTTTAGATACACGTTATTCAAGTAGATCCGCATGTGTCTACCATACATGAATATCGCTCCCTCTCCTCTCCCTCCCCCCCCCCCAACCCCCCCAATCTTACTTGTCACTCTCTTTTCTCGTTCACGTATATGGTATGCGAGATTCTTACTAATTACACTAAATTTTTTGCTAGTGTTACTGGAAAAAATACTATTTTTTTGTCATAATTGATTAGAAAATCTTCTCATTTCTTGATGTTATAAAATTATAACTTTGAAATGAAAAAAAGGGCTAACTCACCCAGCTCTCAATCCTTCTAGGGTTGGGTTGAGTTGAGCATTTTCAGGCTCTTCCAAATGAAGAGCCGGCTTGCCCTAGCCCTTCAAGTTCCTTGGCCCGCGGCTAAGGCCGGGTGGGGCTGGGCGAACCCTTTTTGATAGCTCTAACAAGGTTCAAGAATACTTTGATAATTTCTTCAGATCAATTTGAGGAACCCTAAGTAAAAAGTATTTCCTTCTTAAGTTAATTTTACATGACACAAATTTAAATTAATTAAACTTAATTAATAAAAAAAATTTTAAAAAACAATAGTTGACCAATCCAATAAAGTGGAAACTCACTTATAGGTGAACACTCAAGTATAAAAGCAATTTGAAGCATATGTTAAAATTAATTAATAAATATATATGGAACAAAACCTAACAAAATTACATCCACTTGCTTCGCAAAGAAACTTTCTTTAATTTTTATCACCTTATTATCTTCAAGTGTCTTTCCTATTCAAAGCCATCAATTTCTATCAACCTTCCTACCCAATTAAAAAAGTCAAATTTAAATATTTTTTGTTTTAAAAAAAACAAACAAACAAAAAAAAAAAAAAAAAGAAATGGCAGTAGCATGGAAATCACTTAGTTTGAACTATATATTAGTTGTTAATTTTGACTCATATTGGATTTGACGGAGTAATATTGACTATGCATTAAAGTTATTTCTTTCGTAGCAACTAATATAAAATTGATGACATATTCATATAATAATATTAAATAATATAGAAAAGCTGCAAATTAATTAGATTTTATTTGTGTGAATTTGTTCAAATTATTAGGTTGAGATCCAAATATAATTAAAAGAGACGAATTATGTTAGATTGACAATTAAAGTACAACGGATTAACAATAATATTCATAGTTATTCTTATTTTTTTAATCGTAGTTGATTAATTCTTGATTGAAACTAATTTCATAGTAAAAAAATATTAAACTTTAAATTTCTGTGATAAACATTTTCACTTATTGAAAATAGTAATACAAATATAAAAACACTCCTAATAAATAATAAACTATAGGATTTAAACCGATAAAATAAATATCTACTTCTATTTGTAAATGTTTTTGTACTAGTAATTACAAAGTATATCATACTTTTTCTATAAATTAGTTTAAAGCGTATGTATGTCTTAGTGTTTTTTATCACGATAAAAATAAATTAAGAGACACGAAAGTAAGACATACACATTGATAATCACTAAATCAATATTTAATAATTCTATAATAATTTAGCATGTCTACAAACTGATAGCCGATAAATCAAATCAAAATGACCGAATATTCAACCCTAATATTAGGAAATTTTTATCTATGTTAATAATCATTTTTTTTCTCTCATCAACATTAAGAAGAAAAGAGTGTAGAATTACAATTTAACCCTTTTATTTTCTCCCAACAACCCAAAAAAACTCCAAACATATCCTAAATCCACCAACCCCCAAAATTTAATTTTTTTTTCTCTCAATATATTTTTAAAAAAAATTATATCCATGTTGCATGAAATACCCACGTCATCCTCAAATCTCAACCGTTAATCACAATTAAAATCAATGGCTATAATTAATCTTCCAACAACCACCATTTTTAGTCATTTCCTACAACCCCCTCTCACATAATTTTCTTTACCTACCATCCTTTGTTCCTCTCTATATATACTCACCACATATATCATCTACCATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAA</genome_strand>
        <mrna_strand>GTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGA.....................................................................................................................................................................................................................................................................TGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706559" ref_strand="+" ref_description="SGN-E706559 [FA30BC01]">
      <seq>ctaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcangaaggatccaagcttggattatggactcaagggagctgaaatttgcatggcttcttactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47703" stop="46251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47403" g_stop="46551" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E706559" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47403" e_stop="46551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTC</genome_strand>
        <mrna_strand>CTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCANGAAGG-ATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTTGCATGGCTTCTTACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212083" ref_strand="+" ref_description="SGN-E212083 [cLEC-75-I9]">
      <seq>tcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattancacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaatttgcatggcttcttactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47604" stop="46251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47304" g_stop="46551" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E212083" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47304" e_stop="46551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTC</genome_strand>
        <mrna_strand>TCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTANCACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTTGCATGGCTTCTTACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448416" ref_strand="+" ref_description="SGN-E448416 [cSTS-2-L16]">
      <seq>gtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcangaaggaatccaagcttggactatggactcaaaggagctgaaattgcaatggcttcttactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47517" stop="46252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47217" g_stop="46552" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E448416" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47217" e_stop="46552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCT</genome_strand>
        <mrna_strand>GTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCANGAAGGAATCCAAGCTTGGACTATGGACTCAAAGGAGCTGAAATTGCAATGGCTTCTTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459463" ref_strand="+" ref_description="SGN-E459463 [cPRO-27-N24]">
      <seq>gcacaatcactgcctcaggtgatcttgtccctctgtcctacatatctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccnagcttggactatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47658" stop="46288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47358" g_stop="46588" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E459463" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47358" e_stop="46588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGAC</genome_strand>
        <mrna_strand>GCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATATCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCNAGCTTGGACTATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566407" ref_strand="+" ref_description="SGN-E566407 [4846]">
      <seq>gcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccggtgcagcaactaagatgattgagcgggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttggcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattcacaacaatgggctgccatctaatctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47271" stop="46320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46971" g_stop="46620" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E566407" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46971" e_stop="46620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCC-GTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTT-GCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATT-ACAACAATGGGTTGCCATCTAATCTCAC</genome_strand>
        <mrna_strand>GCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGGTGCAGCAACTAAGATGATTGAGCGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTCACAACAATGGGCTGCCATCTAATCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265134" ref_strand="+" ref_description="SGN-E265134 [cLEI-2-M13]">
      <seq>gaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagcttacaagctggcgtgaaatggatcctcttcgaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaatagaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctaattgggaaattgatgtttgcccaatcttcggaacttggcaacgactattacaacaatgggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47305" stop="46333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47005" g_stop="46633" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E265134" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47005" e_stop="46633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCT-CCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCT-ATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGC</genome_strand>
        <mrna_strand>GAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTTACAAGCTGGCGTGAAATGGATCCTCTTCGAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATAGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTAATTGGGAAATTGATGTTTGCCCAATCTTCGGAACTTGGCAACGACTATTACAACAATGGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298063" ref_strand="+" ref_description="SGN-E298063 [cLEW-12-A9]">
      <seq>tggctggtgttactagtggatttttcgagttgcagcctaaggaaggactggcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcattgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgcgaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47532" stop="46340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47232" g_stop="46640" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E298063" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47232" e_stop="46640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</genome_strand>
        <mrna_strand>TGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTGGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCATTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGCGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207172" ref_strand="+" ref_description="SGN-E207172 [cLEC-30-G18]">
      <seq>ctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47358" stop="46340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47058" g_stop="46640" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E207172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47058" e_stop="46640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</genome_strand>
        <mrna_strand>CTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212120" ref_strand="+" ref_description="SGN-E212120 [cLEC-75-D17]">
      <seq>ctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47529" stop="46346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47229" g_stop="46646" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E212120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47229" e_stop="46646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTAC</genome_strand>
        <mrna_strand>CTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414513" ref_strand="+" ref_description="SGN-E414513 [STM-19-N5]">
      <seq>cctcgtgccgggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtatgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatcttcacagtggcttggccctcaaattgaagtcatccgtgcagcaactaacatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47587" stop="46354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47293" g_stop="46654" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E414513" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47293" e_stop="46654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACG</genome_strand>
        <mrna_strand>CCTCGTGCC-GGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTATGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTTCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAACATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448947" ref_strand="+" ref_description="SGN-E448947 [cSTS-4-N14]">
      <seq>ctccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47588" stop="46361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47288" g_stop="46661" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E448947" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47288" e_stop="46661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTT</genome_strand>
        <mrna_strand>CTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470985" ref_strand="+" ref_description="SGN-E470985 [cSTB-21-D14]">
      <seq>gaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaatgacaatccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47491" stop="46363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47191" g_stop="46663" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E470985" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47191" e_stop="46663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAAC</genome_strand>
        <mrna_strand>GAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAATGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449505" ref_strand="+" ref_description="SGN-E449505 [cSTS-6-P5]">
      <seq>tccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaatgacaatccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47538" stop="46381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47238" g_stop="46681" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E449505" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47238" e_stop="46681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGT</genome_strand>
        <mrna_strand>TCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAATGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205183" ref_strand="+" ref_description="SGN-E205183 [cLEC-16-N19]">
      <seq>acttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47480" stop="46382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47180" g_stop="46682" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E205183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47180" e_stop="46682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATG</genome_strand>
        <mrna_strand>ACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204184" ref_strand="+" ref_description="SGN-E204184 [cLEC-13-C20]">
      <seq>ggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47175" stop="46385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46875" g_stop="46685" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E204184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46875" e_stop="46685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTG</genome_strand>
        <mrna_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425202" ref_strand="+" ref_description="SGN-E425202 [STM-44-B6]">
      <seq>gttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaaggacccctattggggtctccatggataatacaagaatggcccctgcatcaattgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54281" stop="46389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53981" g_stop="53862" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53861" i_stop="47268" i_length="6594">
            <donor d_prob="0.831" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47267" g_stop="47071" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="317" r_length="197" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47070" i_stop="46810" i_length="261">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46809" g_stop="46689" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="438" r_length="121" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E425202" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53981" e_stop="53862"/>
          <exon e_start="47267" e_stop="47071"/>
          <exon e_start="46809" e_stop="46689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTTAATCTTAAAAACAACATATTAGATGATTATCATTTAACATTAACAATAACCTACCCAATTTTATATTAAGATTTAACAATTTTTAATCACGCCCACTACGACAAAAACAGCTTTTAGCGATATTAAATATTGACATTGATAAACAGTGTTAAAGTTTTTACTGGTATTAGTTAAGTGTCATTAGAACCAATATCGCTAAAGACTTTAGCGGTAAAAATACATATTTAGCGGCAATTAAGAATTGACTTTCGCTAATGATCATTTTTACTATAGTGGCTTCGTCAAAGTGATTCATAGGTCATTTACGTAGTCATAAGTTTCTGCTATGGTAGTTTATAGTAAAACAACAATATCTTTTTTACTCCAAACTCAAAATAAGATAAACTCGGTGGCGTTGAAAAAAAATCCATAAAAATTTAACTTAATATCTCATAGACTACCTAATTCATTACGTAAGATATGATCATTTAAAGTTAACCTAACATCTTATATCAAAACTTAATCGATAAAAAATGATAGTTGGCAAAACAAAGAGTGTGGGGTCGGGATGACAATCAAGTGATATGGTTGGAGAAATGGTCACTTTCGTTAAAATTTATAATTTACTGTTCAATTTTTTTTAACGAAAGCTAAAGTACTAGTAGGTGATTTTTTTTAACGTACTAAAATATACATGCTTATATTAATGAAGATATCATATACGCATTTAAAATAATTGAAATATACGTAAATTAATTCGATCGTAAAATCATTAAAACATAATCTAGTCCACCCTGGCATGATAGAAGTATGTATTTATTACTCTTAAAAATAATTCTTGGTAGATTTTATGGACTTAAAGAGGACACGTTTGTCCACCCAATACACTTCAAAATAGTGTTTTTATTTTTAATTATGAAAGAATTTTAACTATTACTTAACTAACCATATAATTAATAGAAAAAATAAGTTAATATGCTATTGAAAGTTCAATTTTCTCTTAATAGATCAAAATAAACAGAGAATTTCATTTAATGGAAAGGTGCAATTTTTTAATGTATAATTTGAAATGGCTTAATATTACCTTTGTTATATTTTGGATTCATTCCTACTTTTGCTTTCGTATTTGTTTTTGTCATTAACGAAGTTTCAAGGAATATTCACAATAATTTACATAATTTTAAAATTGTGATCTAACATTTCTCAAAAGAATTACCAATTTGCTCAAAAAAATATTCTTAAGTTATGATTTGAAAGTGATATTCACTTTTGTTGCTTCCACTTCTTTGTTGATATTTCAAAAAGGCATATAATCAGGTAATAAGGAATGTCGTATTTTCATTAAATGATTCAAAAAATAAACATATTGTGCATGATGTTCGAATTTGAAATCTTTATGATGAATGTTGGACTTTGTAAATTATTAACTGAACCTATAATTTTGTGTCAAGTGATTCAAAATCTAAATATATACTTGAGAAAACCTTATATATACAATATAATTTTCTATCGAGGAGGTTTAGAGCTATCAAAACGGACTTAGCCCATGGGGCTGACCCAGCCCAATCTGTTATTAGGGTAGGATTGAGACAGAATTTTTCAAGTCAATCTAGAGCCTATAAGTTCGGCCCATATAAGTCCTTGGTCCTTGAGGCTTGAATGAAGTCGAGCCAGGATCGGCCGATGGGCCAATTTTTTTTATTCAAGGGTACAATACTCTCACTAGTATATAATATAATTACTTAAATACACGTTATATTGTAATATTATGACTTGTCAGATTTTGATATGTCGAGATACATGTATCTCGAACTATGTGGACTCAAAATTAGGTTAATTTGTTTTAGATACACGTTATTCAAGTAGATCCGCATGTGTCTACCATACATGAATATCGCTCCCTCTCCTCTCCCTCCCCCCCCCCCAACCCCCCCAATCTTACTTGTCACTCTCTTTTCTCGTTCACGTATATGGTATGCGAGATTCTTACTAATTACACTAAATTTTTTGCTAGTGTTACTGGAAAAAATACTATTTTTTTGTCATAATTGATTAGAAAATCTTCTCATTTCTTGATGTTATAAAATTATAACTTTGAAATGAAAAAAAGGGCTAACTCACCCAGCTCTCAATCCTTCTAGGGTTGGGTTGAGTTGAGCATTTTCAGGCTCTTCCAAATGAAGAGCCGGCTTGCCCTAGCCCTTCAAGTTCCTTGGCCCGCGGCTAAGGCCGGGTGGGGCTGGGCGAACCCTTTTTGATAGCTCTAACAAGGTTCAAGAATACTTTGATAATTTCTTCAGATCAATTTGAGGAACCCTAAGTAAAAAGTATTTCCTTCTTAAGTTAATTTTACATGACACAAATTTAAATTAATTAAACTTAATTAATAAAAAAAATTTTAAAAAACAATAGTTGACCAATCCAATAAAGTGGAAACTCACTTATAGGTGAACACTCAAGTATAAAAGCAATTTGAAGCATATGTTAAAATTAATTAATAAATATATATGGAACAAAACCTAACAAAATTACATCCACTTGCTTCGCAAAGAAACTTTCTTTAATTTTTATCACCTTATTATCTTCAAGTGTCTTTCCTATTCAAAGCCATCAATTTCTATCAACCTTCCTACCCAATTAAAAAAGTCAAATTTAAATATTTTTTGTTTTAAAAAAAACAAACAAACAAAAAAAAAAAAAAAAAGAAATGGCAGTAGCATGGAAATCACTTAGTTTGAACTATATATTAGTTGTTAATTTTGACTCATATTGGATTTGACGGAGTAATATTGACTATGCATTAAAGTTATTTCTTTCGTAGCAACTAATATAAAATTGATGACATATTCATATAATAATATTAAATAATATAGAAAAGCTGCAAATTAATTAGATTTTATTTGTGTGAATTTGTTCAAATTATTAGGTTGAGATCCAAATATAATTAAAAGAGACGAATTATGTTAGATTGACAATTAAAGTACAACGGATTAACAATAATATTCATAGTTATTCTTATTTTTTTAATCGTAGTTGATTAATTCTTGATTGAAACTAATTTCATAGTAAAAAAATATTAAACTTTAAATTTCTGTGATAAACATTTTCACTTATTGAAAATAGTAATACAAATATAAAAACACTCCTAATAAATAATAAACTATAGGATTTAAACCGATAAAATAAATATCTACTTCTATTTGTAAATGTTTTTGTACTAGTAATTACAAAGTATATCATACTTTTTCTATAAATTAGTTTAAAGCGTATGTATGTCTTAGTGTTTTTTATCACGATAAAAATAAATTAAGAGACACGAAAGTAAGACATACACATTGATAATCACTAAATCAATATTTAATAATTCTATAATAATTTAGCATGTCTACAAACTGATAGCCGATAAATCAAATCAAAATGACCGAATATTCAACCCTAATATTAGGAAATTTTTATCTATGTTAATAATCATTTTTTTTCTCTCATCAACATTAAGAAGAAAAGAGTGTAGAATTACAATTTAACCCTTTTATTTTCTCCCAACAACCCAAAAAAACTCCAAACATATCCTAAATCCACCAACCCCCAAAATTTAATTTTTTTTTCTCTCAATATATTTTTAAAAAAAATTATATCCATGTTGCATGAAATACCCACGTCATCCTCAAATCTCAACCGTTAATCACAATTAAAATCAATGGCTATAATTAATCTTCCAACAACCACCATTTTTAGTCATTTCCTACAACCCCCTCTCACATAATTTTCTTTACCTACCATCCTTTGTTCCTCTCTATATATACTCACCACATATATCATCTACCATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAA</genome_strand>
        <mrna_strand>GTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGA.....................................................................................................................................................................................................................................................................TGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAAGGACCCCTATTGGGGTCTCCATGGATAATACAAGAATGGCCCCTGCATCAATTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457505" ref_strand="+" ref_description="SGN-E457505 [cPRO-2-L18]">
      <seq>atggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacnagattgggcccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47568" stop="46401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47268" g_stop="46701" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E457505" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47268" e_stop="46701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATT-GGCCCTTGC</genome_strand>
        <mrna_strand>ATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACNAGATTGGGCCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558707" ref_strand="+" ref_description="SGN-E558707 [18090]">
      <seq>aatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaaggcttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47569" stop="46410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47269" g_stop="46710" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E558707" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47269" e_stop="46710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATAC-AAGATT</genome_strand>
        <mrna_strand>AATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAAGGCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305836" ref_strand="+" ref_description="SGN-E305836 [cLEX-14-B10]">
      <seq>tatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47450" stop="46413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47150" g_stop="46713" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E305836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47150" e_stop="46713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAG</genome_strand>
        <mrna_strand>TATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280687" ref_strand="+" ref_description="SGN-E280687 [cLEL-6-I24](-)">
      <seq>caccaataggggtaccttggaagtttccaccgtgtaaggccttgtttcttgaaacatcgatcaatgggttgtcgttcactgagttaatctctctctcaatcatcttagttgctgcacggatgacttcaatttgaggtccaagccactgtggagatgttcgaagagcataacgatcttgctttggtttttgaagaggatccatttcatggagcttctgagctgccttgacataagagcttccatccaaaatgtgttccataatagcagcagcctcaatcggggcagggtgatgcttcaacttgtgtgtcaaatagtcagtgaattcaggctttccgttcatcacttcagcgaaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="46432" stop="47391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46732" g_stop="47088" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E280687" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46732" e_stop="47088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAAATCG</genome_strand>
        <mrna_strand>CACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCGGGGCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305492" ref_strand="+" ref_description="SGN-E305492 [cLEX-15-F20]">
      <seq>ggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagccattttctctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctgtccagattgaggctgctgctattatggaacacattctggatggaagctcttatgtcaaggcagctcacaagctccatgaaatggatcctcttcaacaaccaaagcaagatcgttatgctctttgaacatctccacagtggctcggacctcacattgaagtcatccgtgcaccaactcagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaatgccttacacggaggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47492" stop="46453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47192" g_stop="46753" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E305492" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47192" e_stop="46753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACT</genome_strand>
        <mrna_strand>GGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCCATTTTCTCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGTCCAGATTGAGGCTGCTGCTATTATGGAACACATTCTGGATGGAAGCTCTTATGTCAAGGCAGCTCACAAGCTCCATGAAATGGATCCTCTTCAACAACCAAAGCAAGATCGTTATGCTCTTTGAACATCTCCACAGTGGCTCGGACCTCACATTGAAGTCATCCGTGCACCAACTCAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAATGCCTTACACGGAGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200348" ref_strand="+" ref_description="SGN-E200348 [cLEC-1-M11]">
      <seq>agcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47499" stop="46454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47199" g_stop="46754" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E200348" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47199" e_stop="46754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAAC</genome_strand>
        <mrna_strand>AGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304260" ref_strand="+" ref_description="SGN-E304260 [cLEX-6-N4]">
      <seq>tcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47631" stop="46474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47331" g_stop="46774" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47331" e_stop="46774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACA</genome_strand>
        <mrna_strand>TCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291356" ref_strand="+" ref_description="SGN-E291356 [cLET-2-F19]">
      <seq>ttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47539" stop="46475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47239" g_stop="46775" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E291356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47239" e_stop="46775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAAC</genome_strand>
        <mrna_strand>TTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304081" ref_strand="+" ref_description="SGN-E304081 [cLEX-6-H1]">
      <seq>tggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47528" stop="46476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47228" g_stop="46776" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47228" e_stop="46776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAA</genome_strand>
        <mrna_strand>TGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464969" ref_strand="+" ref_description="SGN-E464969 [cPRO-19-P9]">
      <seq>cttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47635" stop="46477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47335" g_stop="46777" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E464969" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47335" e_stop="46777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAA</genome_strand>
        <mrna_strand>CTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303794" ref_strand="+" ref_description="SGN-E303794 [cLEX-4-O2]">
      <seq>gctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatcttcacagtggcttggacctcaaattgaagtcattcgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47614" stop="46484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47314" g_stop="46784" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E303794" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47314" e_stop="46784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTT</genome_strand>
        <mrna_strand>GCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTTCACAGTGGCTTGGACCTCAAATTGAAGTCATTCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205725" ref_strand="+" ref_description="SGN-E205725 [cLEC-21-J11]">
      <seq>aatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggtagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47441" stop="46486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47141" g_stop="46786" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E205725" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47141" e_stop="46786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATG</genome_strand>
        <mrna_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGTAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241239" ref_strand="+" ref_description="SGN-E241239 [cLED-26-G12]">
      <seq>tttttcgagttgcatcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47512" stop="46487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47212" g_stop="46787" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E241239" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47212" e_stop="46787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGAT</genome_strand>
        <mrna_strand>TTTTTCGAGTTGCATCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477790" ref_strand="+" ref_description="SGN-E477790 [cSTD-1-D6]">
      <seq>ttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttaccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcgggtgatcttgtccctctttcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggctattttcgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaccaagcaagatcgttatgctctccgacatctncacagtggcttggccctcaattgaagtcatccgtgcagcaactaagatgattgagagggagataaactcagtgaacgacaacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47848" stop="46494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47548" g_stop="46794" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E477790" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47548" e_stop="46794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATT</genome_strand>
        <mrna_strand>TTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTACCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCGGGTGATCTTGTCCCTCTTTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCTATTTTCGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTC-AAAACC-AAGCAAGATCGTTATGCTCTCCG-ACATCTNCACAGTGGCTTGGCCCTC-AATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATAAACTCAGTGAACGACAACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228285" ref_strand="+" ref_description="SGN-E228285 [cLED-2-L2]">
      <seq>cccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47630" stop="46502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47330" g_stop="46802" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E228285" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47330" e_stop="46802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGAC</genome_strand>
        <mrna_strand>CCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738936" ref_strand="+" ref_description="SGN-E738936 [LC15CA10]">
      <seq>gcttttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48568" stop="46512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48268" g_stop="48246" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="46812" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="761" r_length="738" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E738936" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48268" e_stop="48246"/>
          <exon e_start="47549" e_stop="46812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTC</genome_strand>
        <mrna_strand>GCTTTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408753" ref_strand="+" ref_description="SGN-E408753 [PPI-12-I5]">
      <seq>aaaaagaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaattttggaagcaatcactaagttgatcaacagcaacatcaccccgtgcttgcctctccgtggtacgatcactgcctcgggtgatcttgtacctttgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggacccaacggtgagaaacttaatgctgaggaagctttccgcgtggctggtgttactggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggcacagcagttggttctgctatggcatcaatagtcctgtttgagtccaacattcttgctgttatgtctgaagttttatcagcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggaagctcttatgtgaaggcagctcagaagctccccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttgggcctcagattgaagtcatccgtgctgcaactaagatgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47857" stop="46528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47549" g_stop="46828" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="740" r_length="724" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E408753" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47549" e_stop="46828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCT--CCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTG</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATCACTAAGTTGATCAACAGCAACATCACCCCGTGCTTGCCTCTCCGTGGTACGATCACTGCCTCGGGTGATCTTGTACCTTTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCCAACGGTGAGAAACTTAATGCTGAGGAAGCTTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGCTATGGCATCAATAGTCCTGTTTGAGTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTGAAGGCAGCTCAGAAGCTCCCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGGCCTCAGATTGAAGTCATCCGTGCTGCAACTAAGATGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452353" ref_strand="+" ref_description="SGN-E452353 [cSTS-16-D13]">
      <seq>acagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47818" stop="46528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47518" g_stop="46828" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E452353" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47518" e_stop="46828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTG</genome_strand>
        <mrna_strand>ACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451960" ref_strand="+" ref_description="SGN-E451960 [cSTS-15-O7]">
      <seq>cagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttacccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactggtggattttttgagttgcagcctaaagaaggacttgcacttgtgaatggcacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgttatgtctgaagttttatcagcgatttttgctgaagtgatgaatggaaagcccgaattcacagactatttgacacacaagttgaagcatcaccctggtcagattgaggcagctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaccaaagcaagatcgntatgctctccgaacatcntccacatggcttggccctcaaattgaagtcatacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47817" stop="46545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47517" g_stop="46845" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E451960" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47517" e_stop="46845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATC-TCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGC</genome_strand>
        <mrna_strand>CAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTACCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTTGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACAGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCAGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTC-AAAACCAAAGCAAGATCGNTATGCTCTCCGAACATCNTCCACA-TGGCTTGGCCCTCAAATTGAAGTCATACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455947" ref_strand="+" ref_description="SGN-E455947 [cSTS-28-G5]">
      <seq>cactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaatagcaacattaccccgtgtttgcccctccgtggaacggtcactgcctcaggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaattccaaggctgttggacccaatggtgagaaacttgacgctgatgaagcgttccgtgtggctggtgttagtggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtacagcagttggttccggtatggcatcaattgtcctgtatgactccaacattcttgctgttatgtctgaagttntatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaagcaagatcgttatgctctccgaacatctnncacatggcttggccctcagattgaagtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47803" stop="46583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47504" g_stop="46849" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E455947" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47504" e_stop="46849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCT-CCACAGTGGCTTGGACCTCAAATTGAAGTCATCC</genome_strand>
        <mrna_strand>CACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAATAGCAACATTACCCCGTGTTTGCCCCTCCGTGGAACGGTCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCCAAGGCTGTTGGACCCAATGGTGAGAAACTTGACGCTGATGAAGCGTTCCGTGTGGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCCGGTATGGCATCAATTGTCCTGTATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTNTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACC-AAGCAAGATCGTTATGCTCTCCGAACATCTNNCACA-TGGCTTGGCCCTCAGATTGAAGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210324" ref_strand="+" ref_description="SGN-E210324 [cLEC-35-M18]">
      <seq>aattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47720" stop="46550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47420" g_stop="46850" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E210324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47420" e_stop="46850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATC</genome_strand>
        <mrna_strand>AATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482299" ref_strand="+" ref_description="SGN-E482299 [cSTD-21-B20]">
      <seq>tcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47508" stop="46550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47208" g_stop="46850" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E482299" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47208" e_stop="46850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATC</genome_strand>
        <mrna_strand>TCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309809" ref_strand="+" ref_description="SGN-E309809 [cLEZ-10-K5]">
      <seq>gcatccggtgatcttgtccctttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgtcggacctaatggtgagaaacttaatgctgatgaagcgttccgcgtggctggtgttactactggatttttcgagttgcatcctaaggaaggacttgcacttgtgaatggtactgcagttggctctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgccatcgattctcgctgaaatgatgaacggaacgcctgaattcactgactatttgacacacaagttgtagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcaaaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47647" stop="46558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47347" g_stop="46858" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E309809" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47347" e_stop="46858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTG</genome_strand>
        <mrna_strand>GCATCCGGTGATCTTGTCCCTTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTCGGACCTAATGGTGAGAAACTTAATGCTGATGAAGCGTTCCGCGTGGCTGGTGTTACTACTGGATTTTTCGAGTTGCATCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGCTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGCCATCGATTCTCGCTGAAATGATGAACGGAACGCCTGAATTCACTGACTATTTGACACACAAGTTGTAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAAAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304799" ref_strand="+" ref_description="SGN-E304799 [cLEX-10-I16]">
      <seq>tcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47636" stop="46566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47336" g_stop="46866" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E304799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47336" e_stop="46866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACC</genome_strand>
        <mrna_strand>TCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336638" ref_strand="+" ref_description="SGN-E336638 [cTOE-4-L3]">
      <seq>acgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47656" stop="46586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47356" g_stop="46886" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E336638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47356" e_stop="46886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACA</genome_strand>
        <mrna_strand>ACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460574" ref_strand="+" ref_description="SGN-E460574 [cPRO-31-P17]">
      <seq>gtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaccaaaagcagatcgttatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47833" stop="46594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47533" g_stop="46894" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E460574" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47533" e_stop="46894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTC</genome_strand>
        <mrna_strand>GTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAACCAAAAGC-AGATCGTTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301501" ref_strand="+" ref_description="SGN-E301501 [cLEW-23-K15]">
      <seq>taggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaagctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47765" stop="46605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47465" g_stop="46905" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E301501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47465" e_stop="46905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGA</genome_strand>
        <mrna_strand>TAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAAGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449378" ref_strand="+" ref_description="SGN-E449378 [cSTS-6-E10]">
      <seq>tagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagcttcatgaaatggatcctcttcaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47729" stop="46615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47429" g_stop="46915" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E449378" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47429" e_stop="46915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAAC</genome_strand>
        <mrna_strand>TAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTTCATGAAATGGATCCTCTTCAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305306" ref_strand="+" ref_description="SGN-E305306 [cLEX-15-H5]">
      <seq>tgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47648" stop="46616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47348" g_stop="46916" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E305306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47348" e_stop="46916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAA</genome_strand>
        <mrna_strand>TGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454983" ref_strand="+" ref_description="SGN-E454983 [cSTS-24-P24]">
      <seq>gtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55036" stop="46632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48379" g_stop="48246" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="46932" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="752" r_length="618" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E454983" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48379" e_stop="48246"/>
          <exon e_start="47549" e_stop="46932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAAT</genome_strand>
        <mrna_strand>GTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340268" ref_strand="+" ref_description="SGN-E340268 [cTOF-2-L16]">
      <seq>tgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48678" stop="46648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48378" g_stop="48246" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="46948" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="735" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E340268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48378" e_stop="48246"/>
          <exon e_start="47549" e_stop="46948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTC</genome_strand>
        <mrna_strand>TGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300695" ref_strand="+" ref_description="SGN-E300695 [cLEW-8-E21]">
      <seq>catgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47408" stop="46649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47108" g_stop="46949" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E300695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47108" e_stop="46949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCT</genome_strand>
        <mrna_strand>CATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298210" ref_strand="+" ref_description="SGN-E298210 [cLEW-9-C12]">
      <seq>aagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcatttggttctggtatggcatcaatggtactgttgagagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47783" stop="46652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47483" g_stop="46952" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E298210" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47483" e_stop="46952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTT-TGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCA</genome_strand>
        <mrna_strand>AAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCATTTGGTTCTGGTATGGCATCAATGGTACTGTTGAGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210268" ref_strand="+" ref_description="SGN-E210268 [cLEC-35-G21]">
      <seq>tgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47697" stop="46670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47397" g_stop="46970" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E210268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47397" e_stop="46970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGA</genome_strand>
        <mrna_strand>TGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268602" ref_strand="+" ref_description="SGN-E268602 [cLEI-13-P3]">
      <seq>caaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47853" stop="46715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47549" g_stop="47015" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="552" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E268602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47549" e_stop="47015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCT</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333407" ref_strand="+" ref_description="SGN-E333407 [cTOD-20-L5]">
      <seq>aaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48727" stop="46722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48427" g_stop="48246" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47499" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="233" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47498" i_stop="47370" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47369" g_stop="47022" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="581" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E333407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48427" e_stop="48246"/>
          <exon e_start="47549" e_stop="47499"/>
          <exon e_start="47369" e_stop="47022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCA</genome_strand>
        <mrna_strand>AAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTT.................................................................................................................................GCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207599" ref_strand="+" ref_description="SGN-E207599 [cLEC-32-A16]">
      <seq>ggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggataatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48571" stop="46724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48271" g_stop="48246" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47024" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="551" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E207599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48271" e_stop="48246"/>
          <exon e_start="47549" e_stop="47024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAG</genome_strand>
        <mrna_strand>GGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGAT-AATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206146" ref_strand="+" ref_description="SGN-E206146 [cLEC-29-J12]">
      <seq>aacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48599" stop="46734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48299" g_stop="48246" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47034" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="570" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E206146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48299" e_stop="48246"/>
          <exon e_start="47549" e_stop="47034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACA</genome_strand>
        <mrna_strand>AACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208258" ref_strand="+" ref_description="SGN-E208258 [cLEC-37-P15]">
      <seq>ggatttggagcaacatctcatagaagaacaaaaaatggtggtgctcttaaaaaagaacttattaggttcttgaatgctggagtttttggtaatggaatagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgagatcttggaagcaatcactaagttgatcaatagcaacatcaccccgtgtttgcctctccgtggcacgatcactgcctcgggtgatctcgtccctttgtcctatattgctggtttgctcactggcagacctaattccaaggctgttggacccaatggtgagaaacttaatgctgaggaagctttctgcgtggctggtattagtggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggcacagcagttggttctgctatggcatcaatagtcctgtttgagtccaatatccttgctcttatgtctgaagttttatcagcgatatttgctgaagtgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48610" stop="46765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48310" g_stop="48246" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47065" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="550" r_length="485" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E208258" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48310" e_stop="48246"/>
          <exon e_start="47549" e_stop="47065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACG</genome_strand>
        <mrna_strand>GGATTTGGAGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCTCTTAAAAAAGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGTAATGGAATAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAGATCTTGGAAGCAATCACTAAGTTGATCAATAGCAACATCACCCCGTGTTTGCCTCTCCGTGGCACGATCACTGCCTCGGGTGATCTCGTCCCTTTGTCCTATATTGCTGGTTTGCTCACTGGCAGACCTAATTCCAAGGCTGTTGGACCCAATGGTGAGAAACTTAATGCTGAGGAAGCTTTCTGCGTGGCTGGTATTAGTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGCTATGGCATCAATAGTCCTGTTTGAGTCCAATATCCTTGCTCTTATGTCTGAAGTTTTATCAGCGATATTTGCTGAAGTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200923" ref_strand="+" ref_description="SGN-E200923 [cLEC-5-D16]">
      <seq>ttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47671" stop="46787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47371" g_stop="47087" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E200923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47371" e_stop="47087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCG</genome_strand>
        <mrna_strand>TTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332389" ref_strand="+" ref_description="SGN-E332389 [cTOD-17-M5]">
      <seq>aagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48675" stop="46800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48375" g_stop="48246" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47100" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="580" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E332389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48375" e_stop="48246"/>
          <exon e_start="47549" e_stop="47100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGA</genome_strand>
        <mrna_strand>AAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706701" ref_strand="+" ref_description="SGN-E706701 [FA30CG06]">
      <seq>attaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48851" stop="46802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48551" g_stop="48246" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47102" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="754" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E706701" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48551" e_stop="48246"/>
          <exon e_start="47549" e_stop="47102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</genome_strand>
        <mrna_strand>ATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465083" ref_strand="+" ref_description="SGN-E465083 [cPRO-20-E3]">
      <seq>attaggttcttgaatgctggagtttttgggaatggaacagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttgcccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggagagaaacttaatgctgaagaagcattccgcgtggctggtgttactggtggatttttccagttgcagcctaaagaaagacttgcacttgtgaatggtacaacaattggttctggtatggcatcaatggtcctggttgattccaacattcttgctggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47854" stop="46806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47549" g_stop="47106" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="449" r_length="444" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E465083" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47549" e_stop="47106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCAT</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGAGAGAAACTTAATGCTGAAGAAGCATTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCCAGTTGCAGCCTAAAGAAAGACTTGCACTTGTGAATGGTACAACAATTGGTTCTGGTATGGCATCAATGGTCCTGGTTGATTCCAACATTCTTGCTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288716" ref_strand="+" ref_description="SGN-E288716 [cLES-8-J7]">
      <seq>tggcattagatttgaaattttggaagcttttactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgtacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47735" stop="46817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47435" g_stop="47117" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E288716" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47435" e_stop="47117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCC-AACATT</genome_strand>
        <mrna_strand>TGGCATTAGATTTGAAATTTTGGAAGCTTTTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGTACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578430" ref_strand="+" ref_description="SGN-E578430 [LE12DH06]">
      <seq>gagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48846" stop="46833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48546" g_stop="48246" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47133" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="718" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E578430" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48546" e_stop="48246"/>
          <exon e_start="47549" e_stop="47133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACT</genome_strand>
        <mrna_strand>GAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582017" ref_strand="+" ref_description="SGN-E582017 [7650]">
      <seq>gtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggttgagaaacttaatgctgaggaagcgtcccgcgtcagctggtggttagtggtggatttttccgagttgcaacctaaagaaagacttgcacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55183" stop="46932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48526" g_stop="48246" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47174" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="661" r_length="380" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E582017" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48526" e_stop="48246"/>
          <exon e_start="47549" e_stop="47174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGG-TGAGAAACTTAATGCTGAGGAAGCGTTCCGCGT-GGCTGGT-GTTACTAGTGGATTTTT-CGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTG</genome_strand>
        <mrna_strand>GTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTTGAGAAACTTAATGCTGAGGAAGCGTCCCGCGTCAGCTGGTGGTTAGTGGTGGATTTTTCCGAGTTGCAACCTAAAGAAAGACTTGCACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289786" ref_strand="+" ref_description="SGN-E289786 [cLET-9-G12]">
      <seq>aactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48584" stop="46906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48284" g_stop="48246" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47206" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="383" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E289786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48284" e_stop="48246"/>
          <exon e_start="47549" e_stop="47206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCG</genome_strand>
        <mrna_strand>AACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305037" ref_strand="+" ref_description="SGN-E305037 [cLEX-10-H15]">
      <seq>ttgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48792" stop="46908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48492" g_stop="48246" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47208" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="589" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E305037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48492" e_stop="48246"/>
          <exon e_start="47549" e_stop="47208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTT</genome_strand>
        <mrna_strand>TTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228199" ref_strand="+" ref_description="SGN-E228199 [cLED-2-A12]">
      <seq>tactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgcttaggaagcgttccgcgtggctggtgttactagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47804" stop="46914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47504" g_stop="47214" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E228199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47504" e_stop="47214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGG</genome_strand>
        <mrna_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTTAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333685" ref_strand="+" ref_description="SGN-E333685 [cTOD-22-A23]">
      <seq>tcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcangcctaactccaaggctgttggacctaatggtgagaaacttaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48952" stop="46948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48652" g_stop="48246" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47248" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="709" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E333685" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48652" e_stop="48246"/>
          <exon e_start="47549" e_stop="47248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTG</genome_strand>
        <mrna_strand>TCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCANGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737685" ref_strand="+" ref_description="SGN-E737685 [LC10DD09]">
      <seq>actaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49085" stop="46950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48785" g_stop="48246" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47250" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="840" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E737685" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48785" e_stop="48246"/>
          <exon e_start="47549" e_stop="47250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGC</genome_strand>
        <mrna_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482437" ref_strand="+" ref_description="SGN-E482437 [cSTD-22-O19]">
      <seq>gttcttgaatgctggagtttttgggaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgattaacagcaacatcaccccgtgtttgcccctccgtggaacggtcactgcctcaggtgatcttgtccctctgtcatacattgctggtttgctcactggcaggcctaattccaaggctgttggaccaaatggtgagaaattcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47849" stop="46950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47549" g_stop="47250" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E482437" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47549" e_stop="47250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGC</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATTAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGAACGGTCACTGCCTCAGGTGATCTTGTCCCTCTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCCAAGGCTGTTGGACCAAATGGTGAGAAATTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303178" ref_strand="+" ref_description="SGN-E303178 [cLEX-5-H4]">
      <seq>aggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgctgtcatacattggtgggttgctcactggcaggcctaactccaaggctgctggacctaatggtgagaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="47851" stop="46954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47551" g_stop="47254" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E303178" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47551" e_stop="47254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTA</genome_strand>
        <mrna_strand>AGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGCTGTCATACATTGGTGGGTTGCTCACTGGCAGGCCTAACTCCAAGGCTGCTGGACCTAATGGTGAGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737370" ref_strand="+" ref_description="SGN-E737370 [LC09CB08]">
      <seq>atttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49064" stop="46967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48764" g_stop="48246" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47267" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="802" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E737370" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48764" e_stop="48246"/>
          <exon e_start="47549" e_stop="47267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAAT</genome_strand>
        <mrna_strand>ATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727357" ref_strand="+" ref_description="SGN-E727357 [LA14BH06]">
      <seq>actaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtccccgttgtcatacattgctggtttgctcactggcaagcccaactccaaagctgttggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49085" stop="46970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48785" g_stop="48246" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47270" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="821" r_length="281" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E727357" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48785" e_stop="48246"/>
          <exon e_start="47549" e_stop="47270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGT-CCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCT</genome_strand>
        <mrna_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAAGCCCAACTCCAAAGCTGTTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735651" ref_strand="+" ref_description="SGN-E735651 [LC02BG08]">
      <seq>cgctcttagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgtatggtccaatggcatcatcaatcgtacaaaatggacatgttaatgaataagctatggatttatgtaacaaataaattaatgttaatgatccattgaattgggaaatggctgctgaatcataaagagggagtcatttggatgaagtgaaaaagatggcggatgaatttataaagccaattgagaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgatgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggagtgaaaactaatagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactcccaggctgttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49080" stop="46971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48783" g_stop="48246" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47271" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="818" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E735651" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48783" e_stop="48246"/>
          <exon e_start="47549" e_stop="47271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGT-TGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACC</genome_strand>
        <mrna_strand>CGCTCTTAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTATGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGAATAAGCTATGGATTTATGTAACAAATAAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATAAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGCGGATGAATTTATAAAGCCAATTGAGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGATGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGAGTGAAAACTAATAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCCAGGCTGTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740123" ref_strand="+" ref_description="SGN-E740123 [LC20AG08]">
      <seq>taataatacactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49094" stop="46977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48794" g_stop="48246" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47277" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="822" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E740123" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48794" e_stop="48246"/>
          <exon e_start="47549" e_stop="47277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGT</genome_strand>
        <mrna_strand>TAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738655" ref_strand="+" ref_description="SGN-E738655 [LC14BH12]">
      <seq>ccattaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49086" stop="46980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48787" g_stop="48246" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47280" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="812" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E738655" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48787" e_stop="48246"/>
          <exon e_start="47549" e_stop="47280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGC</genome_strand>
        <mrna_strand>CCATTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327231" ref_strand="+" ref_description="SGN-E327231 [cTOC-19-K9]">
      <seq>ctaatcatagttcacaacatatttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttangatcaatactctgcttcaaggctactctggcattagatttgaaattttggaaagcatttactagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgntgtcatacattgctgggttgctcactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49084" stop="46997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48784" g_stop="48246" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47297" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="790" r_length="253" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E327231" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48784" e_stop="48246"/>
          <exon e_start="47549" e_stop="47297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGG-AAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGC</genome_strand>
        <mrna_strand>CTAATCATAGTTCACAACATA--TTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTANGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAAGCATTTACT-AGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGNTGTCATACATTGCTGGGTTGCTCACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727249" ref_strand="+" ref_description="SGN-E727249 [LA14AF06]">
      <seq>taatacactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggaagatcactgcatccggtgatcttgtcccgttgtcatacattgctggtttgctcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49091" stop="46999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48791" g_stop="48246" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47299" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="797" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E727249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48791" e_stop="48246"/>
          <exon e_start="47549" e_stop="47299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTG</genome_strand>
        <mrna_strand>TAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGAAGATCACTGCATCCGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740571" ref_strand="+" ref_description="SGN-E740571 [LC22AB01]">
      <seq>caataatacactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49093" stop="47005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48794" g_stop="48246" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47305" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="794" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E740571" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48794" e_stop="48246"/>
          <exon e_start="47549" e_stop="47305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGC</genome_strand>
        <mrna_strand>CAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213353" ref_strand="+" ref_description="SGN-E213353 [cLEC-71-E19]">
      <seq>actaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttangatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaaaagtgatcacagcaacattaccccgtgtttgcccctttcgtggacgatcactgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49085" stop="47043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48785" g_stop="48246" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47343" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="747" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E213353" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48785" e_stop="48246"/>
          <exon e_start="47549" e_stop="47343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACT-AAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATC</genome_strand>
        <mrna_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTANGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAAAGTGATC-ACAGCAACATTACCCCGTGTTTGCCCCTTTCGTGGACGATCACTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478793" ref_strand="+" ref_description="SGN-E478793 [cSTD-7-G7]">
      <seq>caaagttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaccaaaaatggtgggtgcccttcaaaaggaacttattangttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55418" stop="47047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48779" g_stop="48246" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47347" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="730" r_length="203" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E478793" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48779" e_stop="48246"/>
          <exon e_start="47549" e_stop="47347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAG-A-----AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGT-GGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTG</genome_strand>
        <mrna_strand>CAAAGTTCACAAC--AT--TTTTTTAT--A--TAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCT-T-GATCTAATGGC---ATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAG-ACCAAAAATGGTGGGTGCCCTTCAAAAGGAACTTATTAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479195" ref_strand="+" ref_description="SGN-E479195 [cSTD-9-E13]">
      <seq>gttcacaacatttttttatataaataaaattcccatttttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55416" stop="47048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48775" g_stop="48246" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47348" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="726" r_length="202" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E479195" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48775" e_stop="48246"/>
          <exon e_start="47549" e_stop="47348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCAT-TTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAG-A-----AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACT</genome_strand>
        <mrna_strand>GTTCACAAC--ATTT-TTTT-ATAT----AAATAAAATTCCCATTTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCA--TTTTCTTGATCTAATGGCATCA--A-TTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721472" ref_strand="+" ref_description="SGN-E721472 [FC14AB02]">
      <seq>gataaccaaaaaaaaaatattaatacactaatcatagttcacaacatatttttttttatatatataaaaaaaattcccattttttctcttctccaaattctcctaagaaaaatttctccattacaaatcaaaccatttttggttaatccaagggcatcatcaatggtacaaaagggacaggttaagggagaagctatggatttaggtaaaaaatcaattaaggttaaggatccattgaatggggaaagggcggctgaatcattaaaagggagtcatttggatgaagggaaaaaaaggggggatgaatttagaaagccaatggggaaactggggggggaaactttaacagtggcacaagtggcatccatggcaaaggttgataacaaaagtaagggggtcaaaggggaactttctgaaagggcaggggcgggggggaaagctagtagggatggggaaagggatagtagggggaaaggtacagatagttacggggggactacgggattgggggcaacatctcataaaaaaactaaaaaggggggggcacttcaaaaggaacttatcaggttcttgaaggcgggagttttgggaaagggaacaaaatcatctcatactttgccacattcagcaacaagggcagctatgctggttaggatcaaaactcggcttcagggctactcgggcattaaatttgaaattttggaagcaattactaagttgatcaacagcaactttaccccgggtttgccccttcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49111" stop="47059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48812" g_stop="48246" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47359" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="757" r_length="191" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E721472" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48812" e_stop="48246"/>
          <exon e_start="47549" e_stop="47359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTG</genome_strand>
        <mrna_strand>GATAACCAAAAAAAA-AATATTAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAAAAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGAAAAATTTCTCCATTACAAATCAAACCATTTTTGGTTAATCCAAGGGCATCATCAATGGTACAAAAGGGACAGGTTAAGGGAGAAGCTATGGATTTAGGTAAAAAATCAATTAAGGTTAAGGATCCATTGAATGGGGAAAGGGCGGCTGAATCATTAAAAGGGAGTCATTTGGATGAAGGGAAAAAAAGGGGGGATGAATTTAGAAAGCCAATGGGGAAACTGGGGGGGGAAACTTTAACAGTGGCACAAGTGGCATCCATGGCAAAGGTTGATAACAAAAGTAAGGGGGTCAAAGGGGAACTTTCTGAAAGGGCAGGGGCGGGGGGGAAAGCTAGTAGGGATGGGGAAAGGGATAGTAGGGGGAAAGGTACAGATAGTTACGGGGGGACTACGGGATTGGGGGCAACATCTCATAAAAAAACTAAAAAGGGGGGGGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAAGGCGGGAGTTTTGGGAAAGGGAACAAAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTGGTTAGGATCAAAACTCGGCTTCAGGGCTACTCGGGCATTAAATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACTTTACCCCGGGTTTGCCCCTTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554212" ref_strand="+" ref_description="SGN-E554212 [cTSC-3-J15]">
      <seq>cacaacatatttttttttaatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49072" stop="47065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48772" g_stop="48246" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47365" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="711" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E554212" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48772" e_stop="48246"/>
          <exon e_start="47549" e_stop="47365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCC</genome_strand>
        <mrna_strand>CACAACATATTTTTTTTTA-ATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710478" ref_strand="+" ref_description="SGN-E710478 [FA55CC02]">
      <seq>caatacactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattaaatttgaaattttggaagcaattactaacttgatcaacaccaacattaccccgtgtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49090" stop="47067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48791" g_stop="48246" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47367" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="729" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E710478" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48791" e_stop="48246"/>
          <exon e_start="47549" e_stop="47367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCC</genome_strand>
        <mrna_strand>CAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAAATTTGAAATTTTGGAAGCAATTACTAACTTGATCAACACCAACATTACCCCGTGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285531" ref_strand="+" ref_description="SGN-E285531 [cLES-10-E16]">
      <seq>ttttttttcattaaaatttcggattacagatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48992" stop="47077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48715" g_stop="48246" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47377" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="642" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E285531" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48715" e_stop="48246"/>
          <exon e_start="47549" e_stop="47377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCC</genome_strand>
        <mrna_strand>TTTTTTTTCATTAAAATTTC-GGATTACAGATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559188" ref_strand="+" ref_description="SGN-E559188 [18645]">
      <seq>gttcaccaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgtaagaaatcaattaatgttgatgatccattaaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttgggaatggaacagaatcatctcacacattaccacattcagcaacaagggcagctatgcttgttaggatcacaatctgcttcaagttactctggctttagatttgaatcttggaagcattactaagttgatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49059" stop="47092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48751" g_stop="48246" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="524" r_length="507" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47391" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="679" r_length="155" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E559188" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48751" e_stop="48246"/>
          <exon e_start="47549" e_stop="47391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAG-A-----AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAA</genome_strand>
        <mrna_strand>TATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCT-T-GATCTAATGGC---ATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGTAAGAAATCAATTAATGTTGATGATCCATTAAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACATTACCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATC-ACAATCTGCTTCAA-GTTACTCTGGCTTTAGATTTG-AATCTTGGAAGC-ATTACTAAGTTGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737559" ref_strand="+" ref_description="SGN-E737559 [LC10BC12]">
      <seq>ctgcaggaattcggcacgacccactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49086" stop="47093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48785" g_stop="48246" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="562" r_length="540" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47393" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="719" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E737559" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48785" e_stop="48246"/>
          <exon e_start="47549" e_stop="47393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATC</genome_strand>
        <mrna_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719092" ref_strand="+" ref_description="SGN-E719092 [FC06CH08]">
      <seq>ggcgaattggcggcaaatcggccgaattgaaccaaaaaaaaaataataatacactaatcatagttcacaacatattttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaagggcatcatcaattgtacaaaatggacatgttaagggaaaagctatggatttatgtaaaaaatcaattaaggttaatgatccattgaattgggaaagggctgctgaatcattaaaagggagtcatttggatgaagtgaaaaaaatgggggatgaatttaaaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaagggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacaaatagttacggggtgactacgggatttggtgcaacatctcataaaaaaactaaaaatgggggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacaaaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattaaatttgaaattttgaaagcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49109" stop="47104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48806" g_stop="48246" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="591" r_length="559" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47404" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="737" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E719092" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48806" e_stop="48246"/>
          <exon e_start="47549" e_stop="47404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTA</genome_strand>
        <mrna_strand>CAAAAAAAA-AATAATAATACACTAATCATAGTTCACAACATATTTTTTT-TATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAAGGGCATCATCAATTGTACAAAATGGACATGTTAAGGGAAAAGCTATGGATTTATGTAAAAAATCAATTAAGGTTAATGATCCATTGAATTGGGAAAGGGCTGCTGAATCATTAAAAGGGAGTCATTTGGATGAAGTGAAAAAAATGGGGGATGAATTTAAAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAAGGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAAATAGTTACGGGGTGACTACGGGATTTGGTGCAACATCTCATAAAAAAACTAAAAATGGGGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAAAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAAATTTGAAATTTTGAAAGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481627" ref_strand="+" ref_description="SGN-E481627 [cSTD-18-J12]">
      <seq>atcaaagttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55422" stop="47129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48781" g_stop="48246" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47429" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="650" r_length="121" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E481627" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48781" e_stop="48246"/>
          <exon e_start="47549" e_stop="47429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAG------CTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATT</genome_strand>
        <mrna_strand>ATCAAAGTTCACAAC--A-TTTT-TTTA--TATA-A-ATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATT-TT-CTTGATCTAATGG---CATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485676" ref_strand="+" ref_description="SGN-E485676 [cSTE-19-E15]">
      <seq>gttttataatttcacgacattttttttatacacatacaaataaactccaaccattttatcttcactaaaatttcttcattacatatctaaccattttcttgatacaatggcaccatcaattgcacaaaatggacatgttaatggagaagtagaagaagtggctatggatttgtgcaagaaatcaaattatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgactgttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggttggtgtgaaagctagtagtgattgggtgatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaacaaaaaatggtggtgctcttcaaaaagaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacacattgccacattcaacaacaaaggcagctatgcttgttangatcaacactctgcttcaaggctactctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55331" stop="47131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55125" g_stop="54977" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.832"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54976" i_stop="48632" i_length="6345">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48631" g_stop="48246" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="528" r_length="380" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47549" g_stop="47431" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="647" r_length="119" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E485676" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55125" e_stop="54977"/>
          <exon e_start="48631" e_stop="48246"/>
          <exon e_start="47549" e_stop="47431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATAAGTTCACAACATTTTTTTTGT-TATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTTAATCTTAAAAACAACATATTAGATGATTATCATTTAACATTAACAATAACCTACCCAATTTTATATTAAGATTTAACAATTTTTAATCACGCCCACTACGACAAAAACAGCTTTTAGCGATATTAAATATTGACATTGATAAACAGTGTTAAAGTTTTTACTGGTATTAGTTAAGTGTCATTAGAACCAATATCGCTAAAGACTTTAGCGGTAAAAATACATATTTAGCGGCAATTAAGAATTGACTTTCGCTAATGATCATTTTTACTATAGTGGCTTCGTCAAAGTGATTCATAGGTCATTTACGTAGTCATAAGTTTCTGCTATGGTAGTTTATAGTAAAACAACAATATCTTTTTTACTCCAAACTCAAAATAAGATAAACTCGGTGGCGTTGAAAAAAAATCCATAAAAATTTAACTTAATATCTCATAGACTACCTAATTCATTACGTAAGATATGATCATTTAAAGTTAACCTAACATCTTATATCAAAACTTAATCGATAAAAAATGATAGTTGGCAAAACAAAGAGTGTGGGGTCGGGATGACAATCAAGTGATATGGTTGGAGAAATGGTCACTTTCGTTAAAATTTATAATTTACTGTTCAATTTTTTTTAACGAAAGCTAAAGTACTAGTAGGTGATTTTTTTTAACGTACTAAAATATACATGCTTATATTAATGAAGATATCATATACGCATTTAAAATAATTGAAATATACGTAAATTAATTCGATCGTAAAATCATTAAAACATAATCTAGTCCACCCTGGCATGATAGAAGTATGTATTTATTACTCTTAAAAATAATTCTTGGTAGATTTTATGGACTTAAAGAGGACACGTTTGTCCACCCAATACACTTCAAAATAGTGTTTTTATTTTTAATTATGAAAGAATTTTAACTATTACTTAACTAACCATATAATTAATAGAAAAAATAAGTTAATATGCTATTGAAAGTTCAATTTTCTCTTAATAGATCAAAATAAACAGAGAATTTCATTTAATGGAAAGGTGCAATTTTTTAATGTATAATTTGAAATGGCTTAATATTACCTTTGTTATATTTTGGATTCATTCCTACTTTTGCTTTCGTATTTGTTTTTGTCATTAACGAAGTTTCAAGGAATATTCACAATAATTTACATAATTTTAAAATTGTGATCTAACATTTCTCAAAAGAATTACCAATTTGCTCAAAAAAATATTCTTAAGTTATGATTTGAAAGTGATATTCACTTTTGTTGCTTCCACTTCTTTGTTGATATTTCAAAAAGGCATATAATCAGGTAATAAGGAATGTCGTATTTTCATTAAATGATTCAAAAAATAAACATATTGTGCATGATGTTCGAATTTGAAATCTTTATGATGAATGTTGGACTTTGTAAATTATTAACTGAACCTATAATTTTGTGTCAAGTGATTCAAAATCTAAATATATACTTGAGAAAACCTTATATATACAATATAATTTTCTATCGAGGAGGTTTAGAGCTATCAAAACGGACTTAGCCCATGGGGCTGACCCAGCCCAATCTGTTATTAGGGTAGGATTGAGACAGAATTTTTCAAGTCAATCTAGAGCCTATAAGTTCGGCCCATATAAGTCCTTGGTCCTTGAGGCTTGAATGAAGTCGAGCCAGGATCGGCCGATGGGCCAATTTTTTTTATTCAAGGGTACAATACTCTCACTAGTATATAATATAATTACTTAAATACACGTTATATTGTAATATTATGACTTGTCAGATTTTGATATGTCGAGATACATGTATCTCGAACTATGTGGACTCAAAATTAGGTTAATTTGTTTTAGATACACGTTATTCAAGTAGATCCGCATGTGTCTACCATACATGAATATCGCTCCCTCTCCTCTCCCTCCCCCCCCCCCAACCCCCCCAATCTTACTTGTCACTCTCTTTTCTCGTTCACGTATATGGTATGCGAGATTCTTACTAATTACACTAAATTTTTTGCTAGTGTTACTGGAAAAAATACTATTTTTTTGTCATAATTGATTAGAAAATCTTCTCATTTCTTGATGTTATAAAATTATAACTTTGAAATGAAAAAAAGGGCTAACTCACCCAGCTCTCAATCCTTCTAGGGTTGGGTTGAGTTGAGCATTTTCAGGCTCTTCCAAATGAAGAGCCGGCTTGCCCTAGCCCTTCAAGTTCCTTGGCCCGCGGCTAAGGCCGGGTGGGGCTGGGCGAACCCTTTTTGATAGCTCTAACAAGGTTCAAGAATACTTTGATAATTTCTTCAGATCAATTTGAGGAACCCTAAGTAAAAAGTATTTCCTTCTTAAGTTAATTTTACATGACACAAATTTAAATTAATTAAACTTAATTAATAAAAAAAATTTTAAAAAACAATAGTTGACCAATCCAATAAAGTGGAAACTCACTTATAGGTGAACACTCAAGTATAAAAGCAATTTGAAGCATATGTTAAAATTAATTAATAAATATATATGGAACAAAACCTAACAAAATTACATCCACTTGCTTCGCAAAGAAACTTTCTTTAATTTTTATCACCTTATTATCTTCAAGTGTCTTTCCTATTCAAAGCCATCAATTTCTATCAACCTTCCTACCCAATTAAAAAAGTCAAATTTAAATATTTTTTGTTTTAAAAAAAACAAACAAACAAAAAAAAAAAAAAAAAGAAATGGCAGTAGCATGGAAATCACTTAGTTTGAACTATATATTAGTTGTTAATTTTGACTCATATTGGATTTGACGGAGTAATATTGACTATGCATTAAAGTTATTTCTTTCGTAGCAACTAATATAAAATTGATGACATATTCATATAATAATATTAAATAATATAGAAAAGCTGCAAATTAATTAGATTTTATTTGTGTGAATTTGTTCAAATTATTAGGTTGAGATCCAAATATAATTAAAAGAGACGAATTATGTTAGATTGACAATTAAAGTACAACGGATTAACAATAATATTCATAGTTATTCTTATTTTTTTAATCGTAGTTGATTAATTCTTGATTGAAACTAATTTCATAGTAAAAAAATATTAAACTTTAAATTTCTGTGATAAACATTTTCACTTATTGAAAATAGTAATACAAATATAAAAACACTCCTAATAAATAATAAACTATAGGATTTAAACCGATAAAATAAATATCTACTTCTATTTGTAAATGTTTTTGTACTAGTAATTACAAAGTATATCATACTTTTTCTATAAATTAGTTTAAAGCGTATGTATGTCTTAGTGTTTTTTATCACGATAAAAATAAATTAAGAGACACGAAAGTAAGACATACACATTGATAATCACTAAATCAATATTTAATAATTCTATAATAATTTAGCATGTCTACAAACTGATAGCCGATAAATCAAATCAAAATGACCGAATATTCAACCCTAATATTAGGAAATTTTTATCTATGTTAATAATCATTTTTTTTCTCTCATCAACATTAAGAAGAAAAGAGTGTAGAATTACAATTTAACCCTTTTATTTTCTCCCAACAACCCAAAAAAACTCCAAACATATCCTAAATCCACCAACCCCCAAAATTTAATTTTTTTTTCTCTCAATATATTTTTAAAAAAAATTATATCCATGTTGCATGAAATACCCACGTCATCCTCAAATCTCAACCGTTAATCACAATTAAAATCAATGGCTATAATTAATCTTCCAACAACCACCATTTTTAGTCATTTCCTACAACCCCCTCTCACATAATTTTCTTTACCTACCATCCTTTGTTCCTCTCTATATATACTCACCACATATATCATCTACCATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCA</genome_strand>
        <mrna_strand>GTTTTATAATTTCACGACATTTTTTTTATACACATACAAATAAACTCCAACCATTTTATCTTCACTAAAATTTCTTCATTACATATCTAACCA--TTTTCTTGATACAATGGCACCATCAATTGCACAAAATGGACATGTTAATGGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGAAGTGGCTATGGATTTGTGCAAGAAATC-A--AA--TT-ATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACTGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGTTGGTGTGAAAGCTAGTAGTGATTGGGTGATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCTCTTCAAAAAGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACATTGCCACATTCAACAACAAAGGCAGCTATGCTTGTTANGATCAACACTCTGCTTCAAGGCTACTCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423760" ref_strand="+" ref_description="SGN-E423760 [STM-42-D17]">
      <seq>gttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattangttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55416" stop="47168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48775" g_stop="48246" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47468" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="605" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E423760" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48775" e_stop="48246"/>
          <exon e_start="47549" e_stop="47468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAG-A-----AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTT</genome_strand>
        <mrna_strand>GTTCACAAC--ATTT-TTTT-ATAT----AAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCA--TTTTCTTGATCTAATGGCATC---AATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584406" ref_strand="+" ref_description="SGN-E584406 [10231]">
      <seq>tttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaatatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49057" stop="47187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48755" g_stop="48246" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47487" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="575" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E584406" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48755" e_stop="48246"/>
          <exon e_start="47549" e_stop="47487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAA-ATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAG-A-----AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGC</genome_strand>
        <mrna_strand>TTTTTATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAATATTTCTCCATTACAATTCTAGCCA--TTTTCTTGATCTAATGGCATC---AATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735438" ref_strand="+" ref_description="SGN-E735438 [LC01CD03]">
      <seq>cccttttttgttatatatataaataaaattcccattttttctctcctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaaaaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtgaaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacacatagttacggtgtgactactggatttggtgcaacatctcatagaaaaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49063" stop="47191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48766" g_stop="48246" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47491" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="580" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E735438" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48766" e_stop="48246"/>
          <exon e_start="47549" e_stop="47491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATT</genome_strand>
        <mrna_strand>CCCTTTTTTGTTATATATATAAATAAAATTCCCATTTTTTCTCTCCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAAAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGAAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACACATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAAAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468634" ref_strand="+" ref_description="SGN-E468634 [cSTB-5-M4]">
      <seq>gttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55416" stop="47199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48775" g_stop="48246" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47499" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="574" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E468634" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48775" e_stop="48246"/>
          <exon e_start="47549" e_stop="47499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAG-A-----AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTT</genome_strand>
        <mrna_strand>GTTCACAAC--ATTT-TTTT-ATAT----AAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCA--TTTTCTTGATCTAATGGCATC---AATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202257" ref_strand="+" ref_description="SGN-E202257 [cLEC-6-I1]">
      <seq>ataataataatacactaatcatagtgcacaacatatttttttttatatatataaataaaattcccatttgtttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagctacggtgtgactactggatttggagcaacatctcatagaagaactaacaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49098" stop="47222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48798" g_stop="48246" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47549" g_stop="47522" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="582" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E202257" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48798" e_stop="48246"/>
          <exon e_start="47549" e_stop="47522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTT-TTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATATTATTTTTTTTATATATATACACTCGATAACGTAAAAATTTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAACCATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGTGACTGTGTGGTAGGTGAGGGAGATTTTAGTCAATTTTTGTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTGGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAAT</genome_strand>
        <mrna_strand>ATAATAATAATACACTAATCATAGTGCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTGTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGCTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAACAATGGTGGTGCACTTCAAAAGGAACTTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286003" ref_strand="+" ref_description="SGN-E286003 [cLES-13-H6]">
      <seq>tttttttatatttataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49061" stop="47969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48761" g_stop="48274" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E286003" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48761" e_stop="48274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATG</genome_strand>
        <mrna_strand>TTTTTTTATATTTATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725512" ref_strand="+" ref_description="SGN-E725512 [LA03DE04]">
      <seq>taatacactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagatgcacaagttgcatccattgcaaatgttgataacacaagtaatggggtcaaagtggaactttctgaaagtgcacgggctggtgtgaaagctagtagtgattgagtaatggatagtatggcgaaaggtacagatagttacggagtgactactgtatttggtgcacatctcatagatgactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49091" stop="47977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48791" g_stop="48277" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E725512" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48791" e_stop="48277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAA</genome_strand>
        <mrna_strand>TAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGATGCACAAGTTGCATCCATTGCAAATGTTGATAACACAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCACGGGCTGGTGTGAAAGCTAGTAGTGATTGAGTAATGGATAGTATGGCGAAAGGTACAGATAGTTACGGAGTGACTACTGTATTTGGTGC-ACATCTCATAGATG-ACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483891" ref_strand="+" ref_description="SGN-E483891 [cSTE-11-G2]">
      <seq>aaaaaatgttatgaactttgattaatatttatttttggttataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctatccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgtccatgatccattaaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaggccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49049" stop="47990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48766" g_stop="48290" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="500" r_length="476" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E483891" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48766" e_stop="48290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAG--CTA----TGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCAT</genome_strand>
        <mrna_strand>ATATTTATTTTT-GGT-TATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTATCCA--TTTTCTTGATCTAATGG---CATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTCCATGATCCATTAAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAGGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305360" ref_strand="+" ref_description="SGN-E305360 [cLEX-15-L18]">
      <seq>tagttcacaacatattgttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacacttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctattagtgattgggtaatggatagtatggggaaaggcacagatagtttcggcgtgactactggatttggagcaacatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49077" stop="47992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48777" g_stop="48292" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E305360" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48777" e_stop="48292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTC</genome_strand>
        <mrna_strand>TAGTTCACAACATATTGTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACACTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTATTAGTGATTGGGTAATGGATAGTATGGGGAAAGGCACAGATAGTTTCGGCGTGACTACTGGATTTGGAGCAACATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303771" ref_strand="+" ref_description="SGN-E303771 [cLEX-4-G4]">
      <seq>aataatgccgaggatgatacgtcctctaaaaataataataatacactaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49102" stop="48038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48802" g_stop="48338" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="492" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E303771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48802" e_stop="48338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAA</genome_strand>
        <mrna_strand>AAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298231" ref_strand="+" ref_description="SGN-E298231 [cLEW-9-O16]">
      <seq>actaatcatagttcacaacatattggattctatatatataaataaaattcccattggttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacacaagtgatggggtcaaagtggaactctctgaaagtgcaacggctggtgtgaaagctcataatgattgggtaatggatagtatggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49085" stop="48039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48785" g_stop="48339" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E298231" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48785" e_stop="48339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAA</genome_strand>
        <mrna_strand>ACTAATCATAGTTCACAACATATTGGATTCTATATATATAAATAAAATTCCCATTGGTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACACAAGTGATGGGGTCAAAGTGGAACTCTCTGAAAGTGCAACGGCTGGTGTGAAAGCTCATAATGATTGGGTAATGGATAGTATGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365871" ref_strand="+" ref_description="SGN-E365871 [cLPT-11-A12]">
      <seq>ttttttatatatataaataaaattcccattttttctcttctccaaattctcccaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagttgtagtagccatggaattatgtaagaaatcaattaatgttaatgatccattaaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataagaaaagtaatggggttaaagtggaactttctgaaagttcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55363" stop="48041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48760" g_stop="48341" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E365871" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48760" e_stop="48341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAAT-G-G-A---G-A--AGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGG</genome_strand>
        <mrna_strand>TTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCCAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGTTGTAGTAGCCATGGAATTATGTAAGAAATCAATTAATGTTAATGATCCATTAAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAAGAAAAGTAATGGGGTTAAAGTGGAACTTTCTGAAAGTTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272256" ref_strand="+" ref_description="SGN-E272256 [cLEM-19-M12]">
      <seq>ttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49058" stop="48041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48758" g_stop="48341" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E272256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48758" e_stop="48341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGG</genome_strand>
        <mrna_strand>TTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301676" ref_strand="+" ref_description="SGN-E301676 [cLEW-23-N11]">
      <seq>ggaattcggcacgaggcatagaagcttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49076" stop="48045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48774" g_stop="48345" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="455" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E301676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48774" e_stop="48345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTAT</genome_strand>
        <mrna_strand>TTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358541" ref_strand="-" ref_description="SGN-E358541 [cLHT-22-B19]">
      <seq>acccaatcactactagctttcacaccagcccttgaactttcagaaagttccactttgaccccatcacttttgttatcaacatttgcaatggatgcaacttgtgcaactgttaaagtttcacccccaagtttcacaattggctttctaaattcatccaccatttttttcacttcatccaaatgactccctcttaatgattcagcagccatttcccaattcaatggatcattaacattaattgattttcttacataattccatggctactacaacttctccattaacatggtccattttggtacaattgatgatgccattggattaacaaaaaatggtttgatttggttatggagaaattttactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="48057" stop="55365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48357" g_stop="48627" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48628" i_stop="54975" i_length="6348">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.295" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54976" g_stop="55065" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="365" r_length="93" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E358541" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358541" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48357" e_stop="48627"/>
          <exon e_start="54976" e_stop="55065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATCACTACTAGCTTTCACACCAGCCCTTGCACTTTCAGAAAGTTCCACTTTGACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAACTGTTAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATCTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACATTAATTGA-TTTCTTACATAAATCCATAGCTTCTCCATTAACATGTCCATTTTGTACAATTGATGATGCCATTGGACCAACAAAAAATGGTTTGATTTGTAATGGAGAAATTTTACTTAGGAGAATTTGGAGAAGAGAAAAAATGGGAATTTTATTTATATATATAAAAAAAAATATGTTGTGAACTATGATTAGTGTATTATTATTATTTTTTTTGGTTATGGTAGATGATATATGTGGTGAGTATATATAGAGAGGAACAAAGGATGGTAGGTAAAGAAAATTATGTGAGAGGGGGTTGTAGGAAATGACTAAAAATGGTGGTTGTTGGAAGATTAATTATAGCCATTGATTTTAATTGTGATTAACGGTTGAGATTTGAGGATGACGTGGGTATTTCATGCAACATGGATATAATTTTTTTTAAAAATATATTGAGAGAAAAAAAAATTAAATTTTGGGGGTTGGTGGATTTAGGATATGTTTGGAGTTTTTTTGGGTTGTTGGGAGAAAATAAAAGGGTTAAATTGTAATTCTACACTCTTTTCTTCTTAATGTTGATGAGAGAAAAAAAATGATTATTAACATAGATAAAAATTTCCTAATATTAGGGTTGAATATTCGGTCATTTTGATTTGATTTATCGGCTATCAGTTTGTAGACATGCTAAATTATTATAGAATTATTAAATATTGATTTAGTGATTATCAATGTGTATGTCTTACTTTCGTGTCTCTTAATTTATTTTTATCGTGATAAAAAACACTAAGACATACATACGCTTTAAACTAATTTATAGAAAAAGTATGATATACTTTGTAATTACTAGTACAAAAACATTTACAAATAGAAGTAGATATTTATTTTATCGGTTTAAATCCTATAGTTTATTATTTATTAGGAGTGTTTTTATATTTGTATTACTATTTTCAATAAGTGAAAATGTTTATCACAGAAATTTAAAGTTTAATATTTTTTTACTATGAAATTAGTTTCAATCAAGAATTAATCAACTACGATTAAAAAAATAAGAATAACTATGAATATTATTGTTAATCCGTTGTACTTTAATTGTCAATCTAACATAATTCGTCTCTTTTAATTATATTTGGATCTCAACCTAATAATTTGAACAAATTCACACAAATAAAATCTAATTAATTTGCAGCTTTTCTATATTATTTAATATTATTATATGAATATGTCATCAATTTTATATTAGTTGCTACGAAAGAAATAACTTTAATGCATAGTCAATATTACTCCGTCAAATCCAATATGAGTCAAAATTAACAACTAATATATAGTTCAAACTAAGTGATTTCCATGCTACTGCCATTTCTTTTTTTTTTTTTTTTTGTTTGTTTGTTTTTTTTAAAACAAAAAATATTTAAATTTGACTTTTTTAATTGGGTAGGAAGGTTGATAGAAATTGATGGCTTTGAATAGGAAAGACACTTGAAGATAATAAGGTGATAAAAATTAAAGAAAGTTTCTTTGCGAAGCAAGTGGATGTAATTTTGTTAGGTTTTGTTCCATATATATTTATTAATTAATTTTAACATATGCTTCAAATTGCTTTTATACTTGAGTGTTCACCTATAAGTGAGTTTCCACTTTATTGGATTGGTCAACTATTGTTTTTTAAAATTTTTTTTATTAATTAAGTTTAATTAATTTAAATTTGTGTCATGTAAAATTAACTTAAGAAGGAAATACTTTTTACTTAGGGTTCCTCAAATTGATCTGAAGAAATTATCAAAGTATTCTTGAACCTTGTTAGAGCTATCAAAAAGGGTTCGCCCAGCCCCACCCGGCCTTAGCCGCGGGCCAAGGAACTTGAAGGGCTAGGGCAAGCCGGCTCTTCATTTGGAAGAGCCTGAAAATGCTCAACTCAACCCAACCCTAGAAGGATTGAGAGCTGGGTGAGTTAGCCCTTTTTTTCATTTCAAAGTTATAATTTTATAACATCAAGAAATGAGAAGATTTTCTAATCAATTATGACAAAAAAATAGTATTTTTTCCAGTAACACTAGCAAAAAATTTAGTGTAATTAGTAAGAATCTCGCATACCATATACGTGAACGAGAAAAGAGAGTGACAAGTAAGATTGGGGGGGTTGGGGGGGGGGGAGGGAGAGGAGAGGGAGCGATATTCATGTATGGTAGACACATGCGGATCTACTTGAATAACGTGTATCTAAAACAAATTAACCTAATTTTGAGTCCACATAGTTCGAGATACATGTATCTCGACATATCAAAATCTGACAAGTCATAATATTACAATATAACGTGTATTTAAGTAATTATATTATATACTAGTGAGAGTATTGTACCCTTGAATAAAAAAAATTGGCCCATCGGCCGATCCTGGCTCGACTTCATTCAAGCCTCAAGGACCAAGGACTTATATGGGCCGAACTTATAGGCTCTAGATTGACTTGAAAAATTCTGTCTCAATCCTACCCTAATAACAGATTGGGCTGGGTCAGCCCCATGGGCTAAGTCCGTTTTGATAGCTCTAAACCTCCTCGATAGAAAATTATATTGTATATATAAGGTTTTCTCAAGTATATATTTAGATTTTGAATCACTTGACACAAAATTATAGGTTCAGTTAATAATTTACAAAGTCCAACATTCATCATAAAGATTTCAAATTCGAACATCATGCACAATATGTTTATTTTTTGAATCATTTAATGAAAATACGACATTCCTTATTACCTGATTATATGCCTTTTTGAAATATCAACAAAGAAGTGGAAGCAACAAAAGTGAATATCACTTTCAAATCATAACTTAAGAATATTTTTTTGAGCAAATTGGTAATTCTTTTGAGAAATGTTAGATCACAATTTTAAAATTATGTAAATTATTGTGAATATTCCTTGAAACTTCGTTAATGACAAAAACAAATACGAAAGCAAAAGTAGGAATGAATCCAAAATATAACAAAGGTAATATTAAGCCATTTCAAATTATACATTAAAAAATTGCACCTTTCCATTAAATGAAATTCTCTGTTTATTTTGATCTATTAAGAGAAAATTGAACTTTCAATAGCATATTAACTTATTTTTTCTATTAATTATATGGTTAGTTAAGTAATAGTTAAAATTCTTTCATAATTAAAAATAAAAACACTATTTTGAAGTGTATTGGGTGGACAAACGTGTCCTCTTTAAGTCCATAAAATCTACCAAGAATTATTTTTAAGAGTAATAAATACATACTTCTATCATGCCAGGGTGGACTAGATTATGTTTTAATGATTTTACGATCGAATTAATTTACGTATATTTCAATTATTTTAAATGCGTATATGATATCTTCATTAATATAAGCATGTATATTTTAGTACGTTAAAAAAAATCACCTACTAGTACTTTAGCTTTCGTTAAAAAAAATTGAACAGTAAATTATAAATTTTAACGAAAGTGACCATTTCTCCAACCATATCACTTGATTGTCATCCCGACCCCACACTCTTTGTTTTGCCAACTATCATTTTTTATCGATTAAGTTTTGATATAAGATGTTAGGTTAACTTTAAATGATCATATCTTACGTAATGAATTAGGTAGTCTATGAGATATTAAGTTAAATTTTTATGGATTTTTTTTCAACGCCACCGAGTTTATCTTATTTTGAGTTTGGAGTAAAAAAGATATTGTTGTTTTACTATAAACTACCATAGCAGAAACTTATGACTACGTAAATGACCTATGAATCACTTTGACGAAGCCACTATAGTAAAAATGATCATTAGCGAAAGTCAATTCTTAATTGCCGCTAAATATGTATTTTTACCGCTAAAGTCTTTAGCGATATTGGTTCTAATGACACTTAACTAATACCAGTAAAAACTTTAACACTGTTTATCAATGTCAATATTTAATATCGCTAAAAGCTGTTTTTGTCGTAGTGGGCGTGATTAAAAATTGTTAAATCTTAATATAAAATTGGGTAGGTTATTGTTAATGTTAAATGATAATCATCTAATATGTTGTTTTTAAGATTAAACAATCTAATAGCAAAAATCTTATATTGATAGACAATATTACATACGGTCCAAAATACAATAAAATGATATTATGATTATAGTAAATTACTGTAAGGTAAAAAAAAGAATTTGAAAGTAACAGTTGACAAACATTTAGCAGATTGGAATAGGAGCACCATTCCAGCTTTTGAGACACTCCAACAATGGATCAATGATTTGTCCATTGCAAAATGCTGTGAATACCTTATCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAATAGTTCTGTTCCAACTTCTTGTCTAACCAACCTGTACAATGGATATGATCTACATTCTGTGATCCTGTTAGGAATTGCAGGGTTTCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGGTCATCAGCATAGGTAAACAAATATTCCCTTTCCACCACTTGTAGCAATTCCTTTTCGCAGAATCTTGCTGGATGAAGTTCGCCATTAGCACCCATTGCCAGAGTCTTTTTGGCTACTTGGCTTACAGTGTTTTTCACAGCATTCTTCAAATTCTCCTCCAAATGCCTCAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCAACAGCCTCAGCTGTTTTCCTTGCTGAGATTAAGCCCAACGAATTCACATCTTGGTTGTGTTGCTCGGCACTTTGGACGTGGTTAGTCACCGGATTTGCAAGGAATTGAAGTTCCGAGCAGTAAGAAGCCATCGCAATTTCAGCTCCTTTGAAACCATAGTCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAATCCATTGTTGTAATAGTCGTTGACAAGCTCCGAGAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGACACACCGATAGGGGTTCCTTGGAAGTTGCCACCATGTAAGGCCTTGTTTCTTGAAACGTCAATCAATGGATTGTCGTTCACTGAGTTGATTTCCCTCTCGATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCATTGTGGAGATGTTCGGAGCGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGTAGCTTCTGAGCTTCTTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAAATCGCTGACAAGACTTCAGACATGACAGCAAGAATGTTGGACTCAAACAGTACCATTGATGCCATACCAGAACCAACTGCAGTTCCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCCACTAGTAACACCAGCCACATGAAACGCTTCCTCAGCATTAAGCTTCTCGCCATTAGGTCCAACAGCCTTTGAATTAGGCCTGCCAGTGAGCAAACCAGCAATGTATGACAACGGGACAAGATCACCCGAGGCAGTGATCGTCCCACGGAGGGGCAAACACGGGGTAATGTTGCTGTTGATCAACTTAGTAATTGCTTCCAAGATTTCAAATCTAATGCCAGAGTAGCCTTGAAGCAAAGTGTTGATCCTAACAAGCATAGCTGCCCTTGTTGCTGAATGTGGCAAAGTATGAGATGATTCTGTTCCATTTCCAAAAACTCCAGCATTTAAGAACCTGAAGAAAATAAATCATAATATTCATCAACATCACATTTTTAACCAAAATTTATATCAAAGTCAAAATTAGTTATCAAATGTATCGAAAAAAGTCGTTTACCTAATAAGTTCCTTTTGAAGTGCACCACCATTTTTAGTTCTTCTATGAGATGTTGCACCAAATCCAGTAGTCACACCGTAACTATCTGTACCTTTCCCCATACTATCCATTACCCAATCACTACTAGCTTTCACACCAGCCCTTGCACTTTCAGAAAGTTCCACTTTGACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAACTGTTAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATCTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACATTAATTGATTTCTTACATAAATCCATAGCTTCTCCATTAACAT-GTCCATTTT-GTACAATTGATGATGCCATTGGACCAACAAAAAATGGTTTGATTT-GTAATGGAGAAATTTTACTGA</genome_strand>
        <mrna_strand>ACCCAATCACTACTAGCTTTCACACCAGCCCTTGAACTTTCAGAAAGTTCCACTTTGACCCCATCACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAACTGTTAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATTTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACATTAATTGATTTTCTTACATAATTCCATGGCTACTACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCCATTAACATGGTCCATTTTGGTACAATTGATGATGCCATTGGATTAACAAAAAATGGTTTGATTTGGTTATGGAGAAATTTTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377863" ref_strand="-" ref_description="SGN-E377863 [TUS-21-N23]">
      <seq>ttttttttttttttttttttttttttcaataaaatgatattatgattatagtaaattactgtaaggtaaaaaaaagaatttgaaagtaacagttgacaaacatttagcagattggaataggagcaccattccagcttttgagacactccaacaatggatcaatgatttgtccattgcaaaatgctgtgaataccttatcaatctcctcaccgggcgatcgaactttttcacctgtcaatagttctgttccaacttcttgtctaaccaacctgtacaatggatatgatctacattctgtgatcctgttaggaattgcagggtttccactttcaacaacagctcttgcactctcaacttctttaggcaacacggccttcaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcaggggtcatcagcataggtaaacaaatattccctttccaccacttgtagcaattccttttcgcagaatcttgctggatgaagttcgccattagcacccattgccagagtctttttggctacttggcttacagtgtttttcacagcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="49628" stop="53605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49929" g_stop="49952" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49953" i_stop="52671" i_length="2719">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52672" g_stop="53305" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="658" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E377863" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377863" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49929" e_stop="49952"/>
          <exon e_start="52672" e_stop="53305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTTTTTTTTTTTTTGTTTGTTTGTTTTTTTTAAAACAAAAAATATTTAAATTTGACTTTTTTAATTGGGTAGGAAGGTTGATAGAAATTGATGGCTTTGAATAGGAAAGACACTTGAAGATAATAAGGTGATAAAAATTAAAGAAAGTTTCTTTGCGAAGCAAGTGGATGTAATTTTGTTAGGTTTTGTTCCATATATATTTATTAATTAATTTTAACATATGCTTCAAATTGCTTTTATACTTGAGTGTTCACCTATAAGTGAGTTTCCACTTTATTGGATTGGTCAACTATTGTTTTTTAAAATTTTTTTTATTAATTAAGTTTAATTAATTTAAATTTGTGTCATGTAAAATTAACTTAAGAAGGAAATACTTTTTACTTAGGGTTCCTCAAATTGATCTGAAGAAATTATCAAAGTATTCTTGAACCTTGTTAGAGCTATCAAAAAGGGTTCGCCCAGCCCCACCCGGCCTTAGCCGCGGGCCAAGGAACTTGAAGGGCTAGGGCAAGCCGGCTCTTCATTTGGAAGAGCCTGAAAATGCTCAACTCAACCCAACCCTAGAAGGATTGAGAGCTGGGTGAGTTAGCCCTTTTTTTCATTTCAAAGTTATAATTTTATAACATCAAGAAATGAGAAGATTTTCTAATCAATTATGACAAAAAAATAGTATTTTTTCCAGTAACACTAGCAAAAAATTTAGTGTAATTAGTAAGAATCTCGCATACCATATACGTGAACGAGAAAAGAGAGTGACAAGTAAGATTGGGGGGGTTGGGGGGGGGGGAGGGAGAGGAGAGGGAGCGATATTCATGTATGGTAGACACATGCGGATCTACTTGAATAACGTGTATCTAAAACAAATTAACCTAATTTTGAGTCCACATAGTTCGAGATACATGTATCTCGACATATCAAAATCTGACAAGTCATAATATTACAATATAACGTGTATTTAAGTAATTATATTATATACTAGTGAGAGTATTGTACCCTTGAATAAAAAAAATTGGCCCATCGGCCGATCCTGGCTCGACTTCATTCAAGCCTCAAGGACCAAGGACTTATATGGGCCGAACTTATAGGCTCTAGATTGACTTGAAAAATTCTGTCTCAATCCTACCCTAATAACAGATTGGGCTGGGTCAGCCCCATGGGCTAAGTCCGTTTTGATAGCTCTAAACCTCCTCGATAGAAAATTATATTGTATATATAAGGTTTTCTCAAGTATATATTTAGATTTTGAATCACTTGACACAAAATTATAGGTTCAGTTAATAATTTACAAAGTCCAACATTCATCATAAAGATTTCAAATTCGAACATCATGCACAATATGTTTATTTTTTGAATCATTTAATGAAAATACGACATTCCTTATTACCTGATTATATGCCTTTTTGAAATATCAACAAAGAAGTGGAAGCAACAAAAGTGAATATCACTTTCAAATCATAACTTAAGAATATTTTTTTGAGCAAATTGGTAATTCTTTTGAGAAATGTTAGATCACAATTTTAAAATTATGTAAATTATTGTGAATATTCCTTGAAACTTCGTTAATGACAAAAACAAATACGAAAGCAAAAGTAGGAATGAATCCAAAATATAACAAAGGTAATATTAAGCCATTTCAAATTATACATTAAAAAATTGCACCTTTCCATTAAATGAAATTCTCTGTTTATTTTGATCTATTAAGAGAAAATTGAACTTTCAATAGCATATTAACTTATTTTTTCTATTAATTATATGGTTAGTTAAGTAATAGTTAAAATTCTTTCATAATTAAAAATAAAAACACTATTTTGAAGTGTATTGGGTGGACAAACGTGTCCTCTTTAAGTCCATAAAATCTACCAAGAATTATTTTTAAGAGTAATAAATACATACTTCTATCATGCCAGGGTGGACTAGATTATGTTTTAATGATTTTACGATCGAATTAATTTACGTATATTTCAATTATTTTAAATGCGTATATGATATCTTCATTAATATAAGCATGTATATTTTAGTACGTTAAAAAAAATCACCTACTAGTACTTTAGCTTTCGTTAAAAAAAATTGAACAGTAAATTATAAATTTTAACGAAAGTGACCATTTCTCCAACCATATCACTTGATTGTCATCCCGACCCCACACTCTTTGTTTTGCCAACTATCATTTTTTATCGATTAAGTTTTGATATAAGATGTTAGGTTAACTTTAAATGATCATATCTTACGTAATGAATTAGGTAGTCTATGAGATATTAAGTTAAATTTTTATGGATTTTTTTTCAACGCCACCGAGTTTATCTTATTTTGAGTTTGGAGTAAAAAAGATATTGTTGTTTTACTATAAACTACCATAGCAGAAACTTATGACTACGTAAATGACCTATGAATCACTTTGACGAAGCCACTATAGTAAAAATGATCATTAGCGAAAGTCAATTCTTAATTGCCGCTAAATATGTATTTTTACCGCTAAAGTCTTTAGCGATATTGGTTCTAATGACACTTAACTAATACCAGTAAAAACTTTAACACTGTTTATCAATGTCAATATTTAATATCGCTAAAAGCTGTTTTTGTCGTAGTGGGCGTGATTAAAAATTGTTAAATCTTAATATAAAATTGGGTAGGTTATTGTTAATGTTAAATGATAATCATCTAATATGTTGTTTTTAAGATTAAACAATCTAATAGCAAAAATCTTATATTGATAGACAATATTACATACGGTCCAAAATACAATAAAATGATATTATGATTATAGTAAATTACTGTAAGGTAAAAAAAAGAATTTGAAAGTAACAGTTGACAAACATTTAGCAGATTGGAATAGGAGCACCATTCCAGCTTTTGAGACACTCCAACAATGGATCAATGATTTGTCCATTGCAAAATGCTGTGAATACCTTATCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAATAGTTCTGTTCCAACTTCTTGTCTAACCAACCTGTACAATGGATATGATCTACATTCTGTGATCCTGTTAGGAATTGCAGGGTTTCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGGTCATCAGCATAGGTAAACAAATATTCCCTTTCCACCACTTGTAGCAATTCCTTTTCGCAGAATCTTGCTGGATGAAGTTCGCCATTAGCACCCATTGCCAGAGTCTTTTTGGCTACTTGGCTTACAGTGTTTTTCACAGCATTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATAAAATGATATTATGATTATAGTAAATTACTGTAAGGTAAAAAAAAGAATTTGAAAGTAACAGTTGACAAACATTTAGCAGATTGGAATAGGAGCACCATTCCAGCTTTTGAGACACTCCAACAATGGATCAATGATTTGTCCATTGCAAAATGCTGTGAATACCTTATCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAATAGTTCTGTTCCAACTTCTTGTCTAACCAACCTGTACAATGGATATGATCTACATTCTGTGATCCTGTTAGGAATTGCAGGGTTTCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGGTCATCAGCATAGGTAAACAAATATTCCCTTTCCACCACTTGTAGCAATTCCTTTTCGCAGAATCTTGCTGGATGAAGTTCGCCATTAGCACCCATTGCCAGAGTCTTTTTGGCTACTTGGCTTACAGTGTTTTTCACAGCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707229" ref_strand="+" ref_description="SGN-E707229 [FA32BF09]">
      <seq>cagtaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgtagatcatatccattgtacaggttggttagacaagaagttggaacagaactattgacaggtgaaaaagttcgatcgcccggtgaggagattgataaggtattcacagcattttgcaatggacaaatcattgatccattgttggagtgtctcaaaagctggaatggtgctcctattccaatctgctaaatgtttgtcaactgttacttttcaattcttttttttaccttacagtaatttactataatcataatatcattttattgtattttggaccgtatgtaatattgtctatcaatataagatttttgctattagattgttaaatctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53871" stop="52297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53571" g_stop="52594" g_length="978"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="978" r_length="978" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E707229" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53571" e_stop="52594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTTAATCTTAAAAACAACATATTA</genome_strand>
        <mrna_strand>CAGTAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTTCAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTAAATCTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573343" ref_strand="+" ref_description="SGN-E573343 [32639]">
      <seq>tgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagtcgaatgtgaacaactcaatcttccaaaagattgtagctttcgaggacgaattgaaggctgtgttgcctaaagaagttgagagtgcaagagttgttcttgaaagtggcaaccctgtaattcctaacaggataacagaatgcagatcatatccattatacaggtttgtaaggaaagaagttggaacagaactattgacaggtgaaaaagttcgatcgcccggtgaggagattgacaaggtattcacagcattttgcaatggacaaatcattgatccattgttggaatgtctcaagagctggaatggtgctcctcttccaatttgctagatgtttgtcaagttgttaatttttcaaattctttttttaccttatagtgaattactagatcataatatatatgtggtgaagttatatcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53436" stop="52369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53136" g_stop="52688" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E573343" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53136" e_stop="52688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACT-GTT-A-CTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATA</genome_strand>
        <mrna_strand>TGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGTCGAATGTGAACAACTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGTTGTTCTTGAAAGTGGCAACCCTGTAATTCCTAACAGGATAACAGAATGCAGATCATATCCATTATACAGGTTTGTAAGGAAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAATGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATTTGCTAGATGTTTGTCAAGTTGTTAATTTTTCAAATTC-TTTTTTTACCTTATAGTGAATTACTA-GATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235452" ref_strand="+" ref_description="SGN-E235452 [cLED-11-I7]">
      <seq>aagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgtagatcatatccattgtacaggttggttagacaagaagttggaacagaactattgacaggtgaaaaagttcgatcgcccggtgaggagattgataaggtattcacagcattttgcaatggacaaatcattgatccattgttggagtgtctcaaaagctggaatggtgctcctattccaatctgctaaatgtttgtcaactgttactttcaaattcttttttttaccttacagtaatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53605" stop="52396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53305" g_stop="52696" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E235452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53305" e_stop="52696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTA</genome_strand>
        <mrna_strand>AAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403676" ref_strand="+" ref_description="SGN-E403676 [PPC-11-K12]">
      <seq>ctcaagggagctgaaattgcaatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacaccgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaaaaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggctgtgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaaccctgtaattcctaacaggataacagaatgcagatcatatccattatacaggtttgtaaggaaagaagttggaacagaactattgacaggtgaaaaagttcgatcgcccggtgaggagattgacnaggtattcacagcattttgcaatggacnaatcattgatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53838" stop="52500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53539" g_stop="52800" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E403676" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53539" e_stop="52800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATT</genome_strand>
        <mrna_strand>CTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACCGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAAAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTGTAATTCCTAACAGGATAACAGAATGCAGATCATATCCATTATACAGGTTTGTAAGGAAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACNAGGTATTCACAGCATTTTGCAATGGACNAATCATTGATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468476" ref_strand="+" ref_description="SGN-E468476 [cSTB-4-L10]">
      <seq>ggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttgcctatgctgatgacccatgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggaagaattaaatgttgtgttgcctaaagaagttgagagtgcaagagctatgcttgagagtggaaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53693" stop="52601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53393" g_stop="52900" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E468476" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53393" e_stop="52900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAG</genome_strand>
        <mrna_strand>GGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTGCCTATGCTGATGACCCATGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGAAGAATTAAATGTTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTATGCTTGAGAGTGGAAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708898" ref_strand="+" ref_description="SGN-E708898 [FA42AC12]">
      <seq>cgattgattgacgtttcaagaaacaaggccttacatggtggcaacttccaaggaacccctatcggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgtagatcatatccattgtacaggttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54049" stop="52610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53749" g_stop="52910" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E708898" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53749" e_stop="52910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTT</genome_strand>
        <mrna_strand>CGATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404679" ref_strand="+" ref_description="SGN-E404679 [PPC-14-L22]">
      <seq>agcgctttgccaggctatcgacttgaagcatttggaggagaacttgaagaatgctgtcaagaacaccgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaaaaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaagacgaattgaaggctgtgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaaccctgtaattcctaacaggatcacagaatgcagatcatatccattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53650" stop="52620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53351" g_stop="52920" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E404679" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53351" e_stop="52920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTA</genome_strand>
        <mrna_strand>AGCGCTTTGCCAGGCTATCGACTTGAAGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACCGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAAAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAAGACGAATTGAAGGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTGTAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409530" ref_strand="+" ref_description="SGN-E409530 [PPI-14-G16]">
      <seq>ggcttcttactgctcggagcttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggaagaattaaatgttgtgttgcctaaagaagttgagagtgcaagagctgctcttgagagtggaaaccccttcattcctaacaggatcacagaatgcagatcatatccattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53816" stop="52621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53516" g_stop="52921" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E409530" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53516" e_stop="52921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGT</genome_strand>
        <mrna_strand>GGCTTCTTACTGCTCGGAGCTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGAAGAATTAAATGTTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGCTCTTGAGAGTGGAAACCCCTTCATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316424" ref_strand="+" ref_description="SGN-E316424 [cTOA-25-N9]">
      <seq>tgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53886" stop="52654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53586" g_stop="52954" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E316424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53586" e_stop="52954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTA</genome_strand>
        <mrna_strand>TGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590136" ref_strand="+" ref_description="SGN-E590136 [43726]">
      <seq>ccctattggtgtctccatggataatacaagattggccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggagcttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctggcagctgcacctaccctttgatgcagaagctgagacaagtccttggttgatcatgcaatgaagaatggtgaaagtgaggacgaatgtgaacagctcaatcttccaaaagattgtagtctttcgaggaagaattaaatgttgtgttgcctaaaagaagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53993" stop="52698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53693" g_stop="52998" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E590136" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53693" e_stop="52998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCT-GCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTT-GTTGATCATGCAATGAAGAATGGTGAAAGTGA-GAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAG-CTTTCGAGGACGAATTGAAGGCCGTGTTGCCT-AAAGAAGTTGA</genome_strand>
        <mrna_strand>CCCTATTGGTGTCTCCATGGATAATACAAGATTGG-CCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAGCTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGGTTGATCATGCAATGAAGAATGGTGAAAGTGAGGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGTCTTTCGAGGAAGAATTAAATGTTGTGTTGCCTAAAAGAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277402" ref_strand="+" ref_description="SGN-E277402 [cLER-3-O8]">
      <seq>ttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53813" stop="52757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53513" g_stop="53057" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E277402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53513" e_stop="53057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</genome_strand>
        <mrna_strand>TTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407650" ref_strand="+" ref_description="SGN-E407650 [PPI-8-E17]">
      <seq>ctcagtgaacgacaaatccattgattgatgtttcaagaaacaaggccttacaccggtggcaacttccaaggcaccccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattttcagagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaatcgcgatggcttcttactgctctgagcttcaattcttggctaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaaccaccgtagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgtgaaaaggaattgctaccnagttgtggaaagggattaccttgtttgcctatggctgatgacccctgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54065" stop="52849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53765" g_stop="53149" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E407650" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53765" e_stop="53149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTGAACGAC-AATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACA-TGGTGGCAACTTCCAAGG-AACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAA-AAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTA-CAAGTGGTGGAAAGGGAATA-TTTGTTTACCTAT-GCTGATGACCCCTGCAGCT</genome_strand>
        <mrna_strand>CTCAGTGAACGACAAATCCATTGATTGATGTTTCAAGAAACAAGGCCTTACACCGGTGGCAACTTCCAAGGCACCCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTTTCAGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATCGCGATGGCTTCTTACTGCTCTGAGCTTCAATTCTTGGCTAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACCACCGT-AGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGTGAAAAGGAATTGCTACCNAGTTGTGGAAAGGGATTACCTTGTTTGCCTATGGCTGATGACCCCTGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479106" ref_strand="+" ref_description="SGN-E479106 [cSTD-8-J3]">
      <seq>aattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcaacaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggacaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttgcctatgctgatgacccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="53925" stop="52853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53625" g_stop="53153" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E479106" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53625" e_stop="53153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGC</genome_strand>
        <mrna_strand>AATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCAACAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGACAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTGCCTATGCTGATGACCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690618" ref_strand="+" ref_description="SGN-E690618 [LH_Ea03P16]">
      <seq>catgcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacgagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctacatgaaatggatcctcttcaaaaaccgaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcatccgtgcagcaactaagatgatcgagagggagatcaactcagtgaacgacaatccattgatcgacgtttcaagaaacaaggccttacatggtggcaatttccaaggaacccctattggtgtgtccatggataatacaagattggcccttgcatctatcgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaatcaagatgtgaattccttaggcttaatctcagcaaggaagaccgcggaggctgtagacatcttgaagctaatgtcatcaacctatctggtggcgctttgccaggctatcgacttgaggcatttggaggagaatttaaagaatgctgtgaagaacactgtaagccatgtagccaaaaagactctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54342" stop="52954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54042" g_stop="53254" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E690618" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54042" e_stop="53254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-GCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAA</genome_strand>
        <mrna_strand>CATGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACGAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCGAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAATTTCCAAGGAACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATCGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAATCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAGACCGCGGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTGGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAATTTAAAGAATGCTGTGAAGAACACTGTAAGCCATGTAGCCAAAAAGACTCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482377" ref_strand="+" ref_description="SGN-E482377 [cSTD-22-A21]">
      <seq>gaaacaacgccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54030" stop="52997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53730" g_stop="53297" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E482377" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53730" e_stop="53297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCT</genome_strand>
        <mrna_strand>GAAACAACGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207888" ref_strand="+" ref_description="SGN-E207888 [cLEC-34-G2]">
      <seq>tattatggaacacattttggatggaagctcttatgtgaaggtagctcacaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggacctcacattgaagtcattcgtgctgcaactaagatgatcgagagggagattaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaggccttacatggtggcaacttccaaggaacccctattggtgtctccatggataatacatgattggcccttgcatcaattggtaaattgatgtttgcccaattctcagagcttgtcaacgactattacaacaacgggttgtcatctaatctgacagcaggaaggaatccaagcttggactatggtttcaagggcgctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccatgtctaaagtgctgagcaacacaaccaagatgtgagttccttgggcttaatttcagccaggaaaacagctgaggctattgatatcttgaagataatgtcatcaacctatctcgtggctctttgccaagctattgacttacgacatttggaggaaaacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54245" stop="53004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53945" g_stop="53304" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E207888" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53945" e_stop="53304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAA</genome_strand>
        <mrna_strand>TATTATGGAACACATTTTGGATGGAAGCTCTTATGTGAAGGTAGCTCACAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGACCTCACATTGAAGTCATTCGTGCTGCAACTAAGATGATCGAGAGGGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACATGATTGGCCCTTGCATCAATTGGTAAATTGATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTATTACAACAACGGGTTGTCATCTAATCTGACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGCGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCTAAAGTGCTGAGCAACACAACCAAGATGTGAGTTCCTTGGGCTTAATTTCAGCCAGGAAAACAGCTGAGGCTATTGATATCTTGAAGATAATGTCATCAACCTATCTCGTGGCTCTTTGCCAAGCTATTGACTTACGACATTTGGAGGAAAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408901" ref_strand="+" ref_description="SGN-E408901 [PPI-12-F11]">
      <seq>atgactccaacattcttgctgttatgtctgaagttttatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgaccaaccatgttcagagtgcccgagcacacaacaagatgtgaactccttanggcttatctcagcagggaaacagctgaggctgtcgacatcttaaagctatgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54380" stop="53064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54081" g_stop="53364" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E408901" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54081" e_stop="53364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTG-CCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATC</genome_strand>
        <mrna_strand>ATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACCAACCATGTTCAGAGTGCCCGAGC-ACACAA-CAAGATGTGAACTCCTTANGGCTTATCTCAGC-AGGGAAACAGCTGAGGCTGTCGACATCTTAAAGCT-ATGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482388" ref_strand="+" ref_description="SGN-E482388 [cSTD-22-C21]">
      <seq>gaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcaccaaggaaaactgctgaggctgtggacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54030" stop="53080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53730" g_stop="53380" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E482388" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53730" e_stop="53380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCT</genome_strand>
        <mrna_strand>GAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCACCAAGGAAAACTGCTGAGGCTGTGGACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406348" ref_strand="+" ref_description="SGN-E406348 [PPI-3-D13]">
      <seq>gcctaaggaaggacttgcacttgtgaatggtacagcagttggttccggtatggcatcaattgtcctgtatgactccaacattcttgctgttatgtctgaagttttatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaatgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54449" stop="53185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54149" g_stop="53485" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E406348" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54149" e_stop="53485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTG</genome_strand>
        <mrna_strand>GCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCCGGTATGGCATCAATTGTCCTGTATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAATGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206578" ref_strand="+" ref_description="SGN-E206578 [cLEC-31-M21]">
      <seq>cttatatgaaggtagctcagaagctccatgaaatggatcctcttaaaaaaccaaagaaagatcgttatgctctccgaacatctacacaatggcttggaccttaaattgaagtcattcgcgctgtaactaatatgatcgagagggagattaactcagtgaacgacaatccattgatcggtgtttcaagaaacaaggccttacatggtggcaactttcaaggtacccctatcggtgtctccatggataatacaagattggcccttgcatcaattggtaaatagatgtttgcccaattcttagagcttgtcaacgactattacaacaacgggttgccatataatctgacagtaggaagtaatccaagcttggactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54216" stop="53242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53916" g_stop="53542" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E206578" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53916" e_stop="53542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATG</genome_strand>
        <mrna_strand>CTTATATGAAGGTAGCTCAGAAGCTCCATGAAATGGATCCTCTTAAAAAACCAAAGAAAGATCGTTATGCTCTCCGAACATCTACACAATGGCTTGGACCTTAAATTGAAGTCATTCGCGCTGTAACTAATATGATCGAGAGGGAGATTAACTCAGTGAACGACAATCCATTGATCGGTGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTTCAAGGTACCCCTATCGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGTAAATAGATGTTTGCCCAATTCTTAGAGCTTGTCAACGACTATTACAACAACGGGTTGCCATATAATCTGACAGTAGGAAGTAATCCAAGCTTGGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403848" ref_strand="+" ref_description="SGN-E403848 [PPC-11-L24]">
      <seq>atcagcgattttcgctgaagtgatgaatggaaagcccgaattcacagactatttgacacacaagttgaagcatcaccctggtcagattgaggcagctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaagccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctccgagcttgtccacgactatttacaaacaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54343" stop="53288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54044" g_stop="53588" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E403848" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54044" e_stop="53588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTA-TTAC-AACAATGGA</genome_strand>
        <mrna_strand>ATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCCGAATTCACAGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCAGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAAGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCCGAGCTTGTCCACGACTATTTACAAACAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204856" ref_strand="+" ref_description="SGN-E204856 [cLEC-14-J19]">
      <seq>aatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctacatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgcgctccgaacatctccacaatggcttggacctcaaattgaagtcatccgtgcagcaactaagatgatcgagagggaaatcaactcagtgaacgacaatccattgattgacgtttcaagaaacaaggccttacatggtggcaacttccaaggaacccctatcggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54392" stop="53297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54092" g_stop="53597" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E204856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54092" e_stop="53597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTAC</genome_strand>
        <mrna_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470985" ref_strand="+" ref_description="SGN-E470985 [cSTB-21-D14]">
      <seq>gaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaatgacaatccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54442" stop="53314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54142" g_stop="53614" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E470985" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54142" e_stop="53614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGC</genome_strand>
        <mrna_strand>GAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAATGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404522" ref_strand="+" ref_description="SGN-E404522 [PPC-14-E22]">
      <seq>gcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaactaagatgattgagagggagatcaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaagccttacacggtggcaacttccaaagcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54415" stop="53333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54115" g_stop="53633" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E404522" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54115" e_stop="53633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATG</genome_strand>
        <mrna_strand>GCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACTAAGATGATTGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAAGCCTTACACGGTGGCAACTTCCAAAGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257507" ref_strand="+" ref_description="SGN-E257507 [cLEG-45-E3]">
      <seq>atggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactttgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccctccgtgggacgatcactgcctcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcangcctaattcaaaggctgttggacctaatggcgagaagcttaatgctgaggaagcgtttcatgtggctggtgttactagtggatttttcgagttgcagcctaaggaaagacttgcacttgtgaatggaactgcagttggttctggtatggcatcaatggtactgtttgagtcaacattcttgctgtcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55174" stop="53753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54874" g_stop="54603" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54053" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="719" r_length="447" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E257507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54874" e_stop="54603"/>
          <exon e_start="54500" e_stop="54053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</genome_strand>
        <mrna_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCANGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAAGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGT-CAACATTCTTGCTGTCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332828" ref_strand="+" ref_description="SGN-E332828 [cTOD-18-F14]">
      <seq>gcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactttgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccctccgtgggacgatcactgcctcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaattcaaaggctgttggacctaatggcgagaagcttaatgctgaggaagcgtttcatgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggaactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55099" stop="53753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54799" g_stop="54603" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54053" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="645" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E332828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54799" e_stop="54603"/>
          <exon e_start="54500" e_stop="54053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</genome_strand>
        <mrna_strand>GCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261807" ref_strand="+" ref_description="SGN-E261807 [cLEG-61-O7]">
      <seq>atggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactttgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccctccgtgggacgatcactgcctccggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaattcaaaggctgttggacctaatggcgagaagcttaatgctgaagaagcgtttcatgtggctggtggtactaatggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55174" stop="53859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54874" g_stop="54603" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54159" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="614" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E261807" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54874" e_stop="54603"/>
          <exon e_start="54500" e_stop="54159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTT</genome_strand>
        <mrna_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCCGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAAGAAGCGTTTCATGTGGCTGGTGGTACTAATGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482437" ref_strand="+" ref_description="SGN-E482437 [cSTD-22-O19]">
      <seq>gttcttgaatgctggagtttttgggaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgattaacagcaacatcaccccgtgtttgcccctccgtggaacggtcactgcctcaggtgatcttgtccctctgtcatacattgctggtttgctcactggcaggcctaattccaaggctgttggaccaaatggtgagaaattcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="54800" stop="53901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54500" g_stop="54201" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E482437" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54500" e_stop="54201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGC</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATTAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGAACGGTCACTGCCTCAGGTGATCTTGTCCCTCTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCCAAGGCTGTTGGACCAAATGGTGAGAAATTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466767" ref_strand="+" ref_description="SGN-E466767 [cPRO-26-C5]">
      <seq>gatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55009" stop="46986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54709" g_stop="54603" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54237" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="371" r_length="264" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E466767" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54709" e_stop="54603"/>
          <exon e_start="54500" e_stop="54237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTC</genome_strand>
        <mrna_strand>GATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486198" ref_strand="+" ref_description="SGN-E486198 [cSTE-21-K18]">
      <seq>tttataagttcacaacatttttttaataaaaataatctctagccattttttcttcactattttttttccattacaaatataaccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttcatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaacaaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaagcctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttgcccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55403" stop="47014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55123" g_stop="54603" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54265" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="753" r_length="236" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E486198" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55123" e_stop="54603"/>
          <exon e_start="54500" e_stop="54265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAAGTTCACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAG--CT----ATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTG</genome_strand>
        <mrna_strand>TTTATAAGTTCACAACA---TTTTT-TTA-ATAAAAATAATCTCTAGCCATTTTTTCTTCACTATTTTTTTTCCATTACAAATATAACCA--TTTTCTTGATCTAATGG---CATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTCATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGCCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406263" ref_strand="+" ref_description="SGN-E406263 [PPI-3-A22]">
      <seq>tttataagttcacaacattttttttattatcatatatctatatatataccaaataaactctaaccattttctcttcactaaaatttcctctattacttttcttgatcccaatggcaccatcaattgcacaaaatggacatgttaatggagaagtagaagaagttttgtgcaagaaatcaattcatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtaaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaactgttgcacaagttgcatccattgcaaatgctgataacaaaactagtggggtcaaagtggaactttctgaaagtgcaagagctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgctcttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaatagcaacattaccccgtgtttgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55423" stop="47065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55061" g_stop="54603" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="523" r_length="445" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54316" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="708" r_length="185" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E406263" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55061" e_stop="54603"/>
          <exon e_start="54500" e_stop="54316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCT-ATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCC</genome_strand>
        <mrna_strand>TAAAA-TT-TCC--T-C-TAT--TA-CTTTTCTTGAT--CCCAATGGCACCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTAGAAGAAGTTTTGT--GCAAGAAATCAAT--TCATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTAAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACTGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAACTAGTGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGAGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCTCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAATAGCAACATTACCCCGTGTTTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407422" ref_strand="+" ref_description="SGN-E407422 [PPI-7-C18]">
      <seq>tttataagttcacaacattttttttattatcatatatctatatatatacaaataaactctaaccattttctcttcactaaaatttcctctattacttttcttgatccaatggcaccatcaattgcacaaaatggacatgttaatggagaagtagaagaagttttgtgcaagaaatcaattcatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtaaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaactgttgcacaagttgcatccattgcaaatgctgataacaaaactagtggggtcaaagtggaactttctgaaagtgcaagagctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgctcttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcattactaagttgatcaatagcaacattaccccgtgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55423" stop="47066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55096" g_stop="54603" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="521" r_length="479" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54317" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="704" r_length="183" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E407422" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55096" e_stop="54603"/>
          <exon e_start="54500" e_stop="54317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCT-ATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCC</genome_strand>
        <mrna_strand>TATATACAAATAAACTCTAACCATTTTCTCTTCACTAAAATTTC--C--T-C-TATT-A--C---TTTTCTTGATCCAATGGCACCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTAGAAGAAGTTTTGT--GCAAGAAATCAAT-T-CATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTAAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACTGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAACTAGTGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGAGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCTCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGC-ATTACTAAGTTGATCAATAGCAACATTACCCCGTGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406221" ref_strand="+" ref_description="SGN-E406221 [PPI-3-I13]">
      <seq>gttttgtgccaagagatcaattcatgctcccttgaattgggaaatggctgctgaattctttaagagggagtcatttggaatgaagtaaaaaagacaggtggatgaaatttaaaaagcccaattgtgaaaacttgggggtgaaactttaaccttgttgcacaagttgcatccattgcaaatgctgataacaaaactagtggggtcaaagtggaactttctgaaagtgcaagaactggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgctcttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcagggctactctggcattagatttgaaatcttngaaagcattactaagttgatcaatagcaacattacccccgtgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55245" stop="47066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54942" g_stop="54603" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="371" r_length="348" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54317" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="556" r_length="185" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E406221" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54942" e_stop="54603"/>
          <exon e_start="54500" e_stop="54317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCATTGAATTGGGAAATGGCTGCTGAA-TCATTAAGAGGGAGTCATTTGG-ATGAAGTGAAAAAGA-TGGTGGATG-AATTTAGAAAG-CCAATTGTGAA-ACTTGGGGGTGAAACTTTAA-C-AGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTA-CCCCGTGTTTGCCC</genome_strand>
        <mrna_strand>ATGCTCCCTTGAATTGGGAAATGGCTGCTGAATTCTTTAAGAGGGAGTCATTTGGAATGAAGTAAAAAAGACAGGTGGATGAAATTTAAAAAGCCCAATTGTGAAAACTTGGGGGTGAAACTTTAACCTTGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAACTAGTGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGAACTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCTCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAGGGCTACTCTGGCATTAGATTTGAAATCTTNGAAAGCATTACTAAGTTGATCAATAGCAACATTACCCCCGTGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285531" ref_strand="+" ref_description="SGN-E285531 [cLES-10-E16]">
      <seq>ttttttttcattaaaatttcggattacagatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55349" stop="47077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55072" g_stop="54603" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54328" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="642" r_length="173" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E285531" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55072" e_stop="54603"/>
          <exon e_start="54500" e_stop="54328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCC</genome_strand>
        <mrna_strand>TTTTTTTTCATTAAAATTTC-GGATTACAGATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582142" ref_strand="+" ref_description="SGN-E582142 [7775]">
      <seq>ccgggctgcaggaagtgaaaacagatggtggatgacatttagaaagccaattgtgaaacttgggggtgaaacttttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaacagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55191" stop="47092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54897" g_stop="54603" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54343" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="457" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E582142" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54897" e_stop="54603"/>
          <exon e_start="54500" e_stop="54343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTGGATGAAGTGAAAA-AGATGGTGGATGA-ATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAAC-TTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAA-AGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCA</genome_strand>
        <mrna_strand>CCGGGCTGCAGGAAGTGAAAACAGATGGTGGATGACATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAACAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575416" ref_strand="+" ref_description="SGN-E575416 [35037]">
      <seq>agtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagttcaagggctggtgtgaaagctagtaaaaaaagggtgatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaacaaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaaacactctgcttcaaggctactctggcattagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55184" stop="47123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54884" g_stop="54603" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54374" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="410" r_length="128" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E575416" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54884" e_stop="54603"/>
          <exon e_start="54500" e_stop="54374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATC-AACACTTTGCTTCAAGGCTACTCTGGCATTAGATTT</genome_strand>
        <mrna_strand>AGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTTCAAGGGCTGGTGTGAAAGCTAGTAAAAAAAGGGTGATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206929" ref_strand="+" ref_description="SGN-E206929 [cLEC-33-G13]">
      <seq>tatataaaaataatctctagccattttgttttcagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55396" stop="54152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55096" g_stop="54603" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54452" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="543" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E206929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55096" e_stop="54603"/>
          <exon e_start="54500" e_stop="54452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACT</genome_strand>
        <mrna_strand>TATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209139" ref_strand="+" ref_description="SGN-E209139 [cLEC-38-I18]">
      <seq>acaacattttttttgttatataaaaataatctctagccattttgttttcagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55412" stop="54168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55112" g_stop="54603" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54468" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="543" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E209139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55112" e_stop="54603"/>
          <exon e_start="54500" e_stop="54468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAAC</genome_strand>
        <mrna_strand>ACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG......................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282092" ref_strand="+" ref_description="SGN-E282092 [cLES-4-C3]">
      <seq>ccatttttttttcactaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55376" stop="47217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55076" g_stop="54603" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54468" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="507" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E282092" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55076" e_stop="54603"/>
          <exon e_start="54500" e_stop="54468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGCTGGAGTTTTTGGAAATGGAAC</genome_strand>
        <mrna_strand>CCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG......................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347025" ref_strand="+" ref_description="SGN-E347025 [cTOF-25-M12]">
      <seq>attttttttgttatataaaaataatctctagccattttgttttcagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggcttggtgtgaaagctagtagtgattgggtaatgggatagtatggggaaaggtacagatagttaccgtgtgactactggatttggtggaacatctcattgaagaactaaaaatgggtggtgcactttaaaaggaacttatttaggttcttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55407" stop="54301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55107" g_stop="54603" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54500" g_stop="54489" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="521" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E347025" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55107" e_stop="54603"/>
          <exon e_start="54500" e_stop="54489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGC-TGGTGTGAAAGCTAGTAGTGATTGGGTAAT-GGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAAT-GGTGGTGCACTTCAAAAGGAACTTA-TTAGGTAAACGACTTTTTTCGATACATTTGATAACTAATTTTGACTTTGATATAAATTTTGGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTAAATGC</genome_strand>
        <mrna_strand>ATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGGATAGTATGGGGAAAGGTACAGATAGTTACCGTGTGACTACTGGATTTGGTGGAACATCTCATTGAAGAACTAAAAATGGGTGGTGCACTTTAAAAGGAACTTATTTAG......................................................................................................GTTCTTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281001" ref_strand="+" ref_description="SGN-E281001 [cLER-7-D15]">
      <seq>cacaacatttttttgttatataaaaataatctctagccatttttttttcactaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55413" stop="54310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55113" g_stop="54610" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E281001" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55113" e_stop="54610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAAC</genome_strand>
        <mrna_strand>CACAACA-TTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281175" ref_strand="+" ref_description="SGN-E281175 [cLER-7-H18]">
      <seq>ttttgttatataaaaataatctctagccattttgttttcactaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="55402" stop="54458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55102" g_stop="54758" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E281175" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55102" e_stop="54758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTT</genome_strand>
        <mrna_strand>TTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716282" ref_strand="+" ref_description="SGN-E716282 [FB16CE03]">
      <seq>tttttaaaaaaacaacctggcactgcaaaacacctaaaaagtaaaaaaaagcaccaaaatcctaaatccaatgttctttttcagagtttaaagagtgaagaaattaaagttctgttttagtttcagtttcagtacgaggtgatcatccatcagtttatgaattttttggtgttgtcagaacaaggaagttaatttaaagcctttagggttgaagaaaaacttgaatcaatgggttttgtgattgtaatatcactaccattgattctcttcatcctcattgcagcccttgcttgttacctctttggtaagtctcgaggccgtcgagaagccgccatggttccaccatattatggaccaccaccaccagcacctcctcccggagtcctttctccgccaccccaaaaataacatttgtaaatgtcatgtagttaaaatttgagcaatacctttgtttgtttatttgggcaaaatgattgttataaaggccaaaagtgaatattaatgcttctttttatgtcatacnangaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnccggggggggggggggggaacccttttcccctttaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="71209" stop="49628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70909" g_stop="70724" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70723" i_stop="69397" i_length="1327">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69396" g_stop="69047" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="534" r_length="350" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69046" i_stop="60085" i_length="8962">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60084" g_stop="60069" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="550" r_length="16" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60068" i_stop="58440" i_length="1629">
            <donor d_prob="0.845" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58439" g_stop="58368" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="622" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E716282" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70909" e_stop="70724"/>
          <exon e_start="69396" e_stop="69047"/>
          <exon e_start="60084" e_stop="60069"/>
          <exon e_start="58439" e_stop="58368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAAAAAACAACCTGGGCACTGCAAAACACCTAAAAAGTAAAAAAAAAGCACCAAAATCCTAAATCCAATGTTCTTTTTCAGAGTTTAAAGAGTGAAGAAATTAAAGTTCTGTTTTAGTTTCAGTTTCAGTACGAGGTGATCATCCATCAGTTTATGAATTTTTTGGTGTTGTCAGAACAAGGTATGTTTACTTTTCTAATTTATTTTTTGGTTATCGGTTATAAAATTATATCGAATATATTATTATTGTTTTGTTTGCTCATCTTGTATTTTTATTTACTCCATATTCCCTTACCTTCCTGTGATGGGTGATGATCTCCCGTGTTTGATTAGTTTAGATTCGAGTGATTTATACAAATAGAATAGATTTGAACTCGAACTTGAACTTGAGATTCACAATTCGATGATAGGTGATAAGTTTTTACGGATCACCAGATTTTTTTTATTTTTTTTTTTTACGATCCATAGGTGAAGATTAAGAAATATTTTGAAACAAATTGTTTACAAGTTTTGATGAATCAGTTGTGCGTAACCAACTTTTGCCAATGAAATTTCAATACAATATCAAGTGTTTGATTCATTGATTTTTCACGTTATATTGTGTTAGGTTTAAAATTTTATAAAAATATTCTTTTCGATTATATCCTTGAATTAATTTTAGGCTTGTTTAATCGAGAAATAGGATGTTCGTTTACTGATCCTTAAGACTCGAGGAGTAGTTCAATCATTTTATTGCTTAAGAGCCCATTTGGATTGATTTTAAACAGTAGTAACTTAAAATAAAAGTTGAACTGAAATAATTTTCAACTCAAAAAAAAAAGAGTAGGATAGATCTACTTTTGATTTTTGACTTATTTTAAGTTTTTTTTATTTGTCACACATTTTCAAAAAGTCAAAAACTGACTGAAGATTAAATTTAATCGATTTTTCAGTTAATCCAAATGGGCTCTAAGTCTGGTATTAGTAATCCCTAGCTATAGTAGGTATTCAACAAGACCATATAAAGAAATTCCAAGTACATCATGTTGGAGTTTTAGATTTAACAATTTTGAAATTACTTCAAAGTTTTTCCTCGTCTTAACTATACTTTTTATTTTAAATTTTGCTTACATATTAAAAATCTACTAAATCAAAAAATTTTGAAAATCGATAAAATCCACTCTCTTCCTTTTCATAGACATGAGAAGAAATTTGTCGATTGGACTGAACCTCAGTTGTAATTGGGCTCTAATATACACCCCACTTAGTAAGGTTGAAAGTTTATTTCAATAATTACATAATTCGTGCGAGATTAATTTTGAATACATGTATTTGACACGTTGGATTTTCATGTATCTCAGATATATGTGCGTTAAATTTGCACTATTTTTGGTAGTTTAAGATCATCATTAACGCCTATTTATGATTTTTAAAATCCAAACAGATTTTTTATTTGTATCGTTAGTGCATATAACTTAGGCATTAAAAGTCGTTTATTTTAACGTGTGCACACATTATAATTTTGGCAGGAAGTTAATTTAAAGCCTTTAGGGTTGAAGAAAAACTTGAATCAATGGGTTTTGTGATTGTAATATCACTACCATTGATTCTCTTCATCCTCATTGCAGCCCTTGCTTGTTACCTCTTTGGTAAGTCTCGAGGCCGTCGAGAAGCCGCCATGGTTCCACCATATTATGGACCACCACCACCAGCACCTCCTCCCGGAGTCCTTTCTCCGCCACCCCAAAAATAACATTTGTAAATGTCATGTAGTTAAAATTTGAGCAATACCTTTGTTTGTTTATTTGGGCAAAATGATTGTTATAAAGGCCAAAAGTGAATATTAATGCTTCTTTTTATGTCATACAAAGAAATAAAAGCATATTCCTAACAAACAGCCCCAAATTAAAGGATACAAGTTCATAACATATCTAGAAATTCACCATAAGGTAAAATACTGAATTTGGAACATAGCACTTCAAAAATTAAACACCTAGCAGATTGGAATAGGAGCACCATTCCAGTTCTTGAGACATTCCAACAATGGATCAATGATCTCTCCATTGCATATTGCTGTGAACACCTTTTCAATATCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAGTTCTGTTCCAAGTTGTTGTCTCACCAACTTGTACAATGGATATGATCTGCATTCTGTGATTCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCATTCTCAACTTCTTTAGGTAACACAGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCATTCTTCATAGCATGATCAACAAGGACTTGTCTCAGCTTCTGGATCAAAGGGTAAGTGGAGTTGCAAGGATCATCAACATAGGCAAACAGGTATTCCCTGTCCACAACTTGTGGCAATTCCTTTTCGCAGAATCTTGCTGGATGAAGTTCACCATTAGCACCTACTGTCAAAGTTCTTTTAGCTACTTGACTCACTGTATTCTTGACCGCATTGCTCAAGTTCTCCTCCAAATGCCTCAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCAACAGCCTCAGCTGTTTTCCTTGCTGAGATTAAGCCCAACGAATTCACATCTTGGTTGTGTTGCTCGGCACTTTGGACGTGGTTAGTCACCGGATTTGCAAGGAATTGAAGTTCCGAGCAGTAAGAAGCCATCGCGATTTCAGCTCCCTTGAAACCATAATCCAAGCTTGGATTCCTTCCTGCTGAGAGATTAGATGGCAATCCATTGTTGTAATAGTCGTTGACAAGCTCCGATAATTGGGCAAACATCAATTTCCCTATTGATGCAAGGGCTAATCTTGTATTATCCATGGAGACACCAATAGGGGTTCCTTGGAAGTTTCCACCATGCAACGCCTTGTTTCTTGAAACATCGATCAATGGATTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTACGCGGATGACTTCAATTTGAGGGCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCATTCATCACTTCAGCGAAAATCGCTGATAAAACTTCAGACATGACAACAAGAATGTTGGACTCAAACAGTACCATTGATGCCATACCAGAACCAACTGCAGTACCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCCACTAGTAACACCAGCCACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCATTAGGTCCAACAGCCTTGGAGTTAGGCCTGCCAGTGAGCAAACCAGCAATGTATGACAACGGGACAAGATCACCCGATGCAGTGATCGTCCCACGAAGGGGCAAACACGGGGTAATGTTGCTGTTGATCAACTTAGTAATTGCTTCCAAAATTTCAAATCTAATGCCAGAGTAGCCTTGAAGCAGAGTATTGATCCTAACAAGCATAGCTGCCCTTGTTGCTGAATGTGGCAAAGTATGAGATGATTCTGTTCCATTCCCCAACACTCCAGCATTCAAGAACCTGAAAAAATCAATGTCATCAAGATTAGATTTCGAACTAAATTCATCCGAAACTCCTTCTGGAAAAATCACATTATAAATGTGAGTCGATAAGCTATATATACGAAAAATATAAAAATTCTTTACGTTGTGAGTGTATATATAACGGGGAAAAAGTAGTTTACCTAATAAGGTCTTTTTGAAGAGCACTACCATTTGTTGTTCTTCTATGAGACGTGTCACCAAATCCAGTAGTCACACCATAACTATCTGTACCTTTGCTCATACTATCCATTACCCAATCACTACTAGCTTTCACACCAGCCCTTGAGCTTTCAGAAAGTTCTACTTTAACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAATTGTCAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATCTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACAATAATTGATTTCTTGCATAAATCCATGGCTACAACTTTTCCATTAGCATGTCCATTTGGTACAATTGATGCCATTAGATCAAGAAAATGGCTAGATTTGTAATGGAGAAATTTTAATTAGGAGAAAATGATGTTGTGAACTTATAATTTTTGTTGTTGTTTTGGTGGTGAGTATAAACAGAGAGTAACAAATGATGGTTAGGTAAAAAAAAAAAGATATGTGAGGGGTGAGTTGGTAAAAAAATAATGGTCATAGGAAGATTAATAGAATTAAGGATAATAGAATTTAATAATTGAATTTTGTCTAAAAGAGGCAAATTTTGTTTATATTGATCAATATTATTAACTATAATATGTTTTTATTAAATTCTGATTTTTCTTTGAATGAGGCAAATTTTATTGATATTGGTCAACGTTATTAAGTGTAATACATTTTTATTAAATTCTAGATTTTGTCTTAAAGAGCAAATTTTATTTATATTGGTTAATATTATTAAGTATAATATATTTTTACTAAATATTTTGTCTGAATGAGGCAAATTTCATTTATATTGGTCAATATTATTAAGTGTAATATATTTTTACTAAGTTTTAAATTTTGTCTGAATGAGGCAAATTTCATTTATATTGGTCAATATTATTAAATATAATATACTTTTATTAAATTCTGAATTTTATTTGAAAGAGGCAAATTTTATTTATGTTGGTCAATATTATTAAGTATAATATATTTTTATTAAATTCTGAATTTTGTTTGAATGAGGAAAATTTTATTTATATTGGTCAATATTATTAAGTATAATATATTTTTATTAAATTCCAGATTTTATCTGAAGAGGCAAATTTTATTTATATTGGTCAATACTTAATATCTGAAGAGGCAAATTTTATTTATATTGGTCAATACTATTAAGTATAATGTATTTTTATTAAATTTTGAATTTTGTATGAATGAGGAAATTTTTATTTATATTGGTCAATATTATTAAGTACAATGTATTTTTATTAAATTCTGAATTGTTTTGAATGAGCCAAATTTTATTTATATTGGTCAATATTATTAAGTATAATGTATTTTTATTAAATTTTGAATTGTTTTTGAATGAGCCAAATTTTATTTATATTGGTTTAAGTATAATATATATTCTATTAAATTCTAGAATTTTTTTTTAAAAAAGACAAATTTTATTTATATTTGTCAATATTATTAAGTATAACATATTTTTATTAAATTTTGAGTTTTGCCTGAAAGATACAAATTTATTTATGTTTGGTCAATATTATTAAGTATAATACATTTTTATTAAATTTTTGAATTTATCTGGAAGGAAACAAATTTTATTTATATTGGTCAATATTATTAAGTATAATATATTTCTATTAAATTCTGAATTTTGTTTGTGTCGAGCCCCAAAAAAGGGAAGAGTAACTGACACTTAAATAATCTATCTAATCGAGTTAGCCAGTGAAACATACTAGTTAACCAAACAGTAAGACAGAGATCAGCCAACACAACATCTGAAATGGGAAGCCTGGACCATGAAGGTATGACCTATATGACAATTACTCATACAAACAATGATAGACAAGTCAAAAAAACAAAGATGTACTAGCTAGCCGACAAGGCCGCAACTGAAGACAAATCTATTTACATATATATACGTACATACCAAGTCTATAGGCTAGAGATTGAAACATACAAGAAAATCCAGAATACTGTGTCCACAATACCCTCTAGGAATGACATAAGCAATGTCGGGACAAGAACTCGACTATGCTTAAATTGTACAACAAAAGTAAATATCCTCTAATAACTCAAAGATAAGATGGAGCTTACCAACTCACAGCTGAGCCCGAATTTTAGCGGTTGAGTCAATCAAAATACCTACCTGAATTTGCTCGCACGAAAAAAGCAACTTCCCCAGGCAATGGGACGTCAGTAAGAATAAAAATGTACTGATATGTAAAGCCGGAAGTGAAATCATCAATAACTAATATAAAAGGGTAAAAAGATATCATTTGAAACTGAAACTCAATTAATCTCCATGGCTAACATTTGGCCTCCTTCTATTTAAATATGCATGGTATGCTCATATAATCGTATGTCGTAAATACGTATATATAGATGCAAATGCATGACATACCCAACCAAATGCTAGCAATGGTTGTGCTTTCTAGTAGCTAACCGACAGTATATTCATCAACTTGTGTCTATCGGTATCACATACGTATAAATATAGGTAATAAGCCTCATACCTCCCGATTATACCTTAGGAGTAGAATGCATAACATGTCATGTCATGGATTCATACGCATATATATTACCGTTGTCATGTTGTCAATCTTGGCCCGTTTGTGTTCTTGATATCATAACCCCGTGTAATCACTTTCATATGTGTAACCATCTCATCGAACCTCATATGCTCTTCCAAATAAGCTAGAAAACTTGACTCGAGTTTTAAAAAGATAGCCTAACCTTGAAAATGTTCATAACAAGTTTAAGGTGATTTACTTAGTTCGTATATATACTTAGTTCTTAAATAATTTAAAAAGAATCAAGTGTTCTACTAATTTAATAATTTAAGTTATATTTGAGAGTTTTAAAGACCGTGAGTTACTTTAAAGAATTTTTAAAATAAATTTTAGTGGGGAAAAAGTGCTAACTACAAATAATAAGGGTCACCCGTAACATTTTTAAGTCACACCACCGAAGGAAGAATAAGAATTCATACATATGGACTTATAATACACGAAACCGATAAAATGACATATAGATTTCGAATACCCAATTTATTTGAACGAGTGAAATATTCAAATACTAGAATTATGTAAATAATTCAGCTATGATCCCAATGCCTTTCACATAAGGTCTTTCTAGCAAGAGAATAGCAAAATATCACATTTGACATTTAGAAATTTCCCAAATGTATTGTTAAAATAAGGCATGAAGCTTAGCCTTAACATACCTTTTCAATGAATGCTCGAATGCCCATAGTTCCCTCACAAAAGTTATTCCTTATGTCCTAAGCTTCGCAAACACAATATATACTTCTATAAACAATATTTAGAGTTCGGACTCCTGGATTAGATTCCAACAATTTCATTGGACTCAAGAGGCAATTTTAAGCCTAGGTGAGACCTATTGACCTTTGATAAGAGAGTGTGGAGGGCGAAGATTCAACTGAAACACTAGTATTCCGTAGCATTAATATCATTAATATTAAGAAATTGAACTATAATTAAGGCGATGTACTATTGTTTAAAGTTAGATTCACCAAAAATGAAGACACAAAGATATGTATTATAACCTGTAAAGTTGTAGAAATTGAATGAACATACAATTTAGAGATTATTATAATTGTAGTAATTCACTGAAAAAATAAGACTTGACAAACATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCCTCAGCGGTTTTCCTTGCTGAGATTAAGCCCAATGAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAAATCGCTGACAAGACTTCAGACATGACAGCAAGAATGTTGGACTCAAACAGTACCATTGATGCCATACCAGAACCAACTGCAGTACCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCCACTAGTAACACCAGCCACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCATTAGGTCCAACAGCCTTGGAGTTAGGCCTGCCAGTGAGCAAACCAGCAATGTATGACAACGGGACAAGATCACCCGATGCAGTGATCGTCCCACGAAGGGGCAAACACGGGGTAATGTTGCTGTTGATCAACTTAGTAATTGCTTCCAAAATTTCAAATCTAATGCCAGAGTAGCCTTGAAGCAGAGTATTGATCCTAACAAGCATAGCTGCCCTTGTTGCTGAATGTGGCAAAGTATGAGATGATTCTGTTCCATTTCCAAAAACTCCAGCATTCAAGAACCTGAAGAAAATAAATCATAATATTCATCAACATCACATTTTTAACTAAAATTCTACTAACATGTGTCATCAAGTAGACTTACAAGTTTGTTTGTACTAGACTTACAAGGTACAAATAAAGATCATGAGCACAAATTTGATTATAAAAAAAAATACTGATTTATAATATTTTTATATGTGACACTATAAAATACATATCTGACAAGAGATGGCACATGGGAACTAACATTACATCTTAAAAAGTTGAACAATCTGTCTCATATATTTTTGTGATGAAAACACAAGATACTATAGTTTTATTTATTCAAAATAAAGATTTCTTACTAGAATTATTTATTCACATATAAATGAAGAAAACCAATTTGAAAAAAATTACTTACTAACGTCCAAGTTGATAAAAAAACAAAAATTGAAGGAAGTAAAATGACTAAAATCTCCCTCACCTACCACCCAGTCACTAACTTTTCCCAAACCCCACATGCACAAATCAATAGGGTGGTTCAACTTGTATAATTAAATACATAGCTTTCAATAATCAAATTTTACTATGATAATTCGAAATTAAATAAATAAATTGCTATTTATTAAAAAAGAATTTTTACGCTATCAAATCAAATAATTGTAGTAAACTTAACACTACTATTAGATCACATGAAGAAAAACTATAGATATATATCATAATTGACATAACAAACTATAAATACGAAAAAAATATAAAAATTCTTTACGTTATCGAGTGTATATATATATAAAAAAAAAATTTACCTGATAAGTTCCTTTTGAAGTGCACCACCATTTTTAGTTCTTCTATGAGATGTTGCACCAAATCCAGTAGTCACACCGTAACTATCTGTACCTTTCCCCATACTATCCATTACCCAATCACTACTAGCTTTCACACCAGCCCTTGCACTTTCAGAAAGTTCCACTTTGACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAACTGTTAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATTTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACATTAATTGATTTCTTACATAAATCCATGGCTTCTCCATTAACATGTCCATTTTGTACAATTGATGATGCCATTGGATTAACAAAAAATGGTTTGATTTGTAATGGAGAAATTTTAGTGAAAAAAAAATGGCTAGAGATTATTTTTATATAACAAAAAAATGTTGTGAACTTATAAAACTTTATGGTATTGTTGTGATCAAATGTAGTGAGTATATATAGAGACTAATATGTGAGAGGGGGTTGCTAGGAAAATACTAATATAAATCAAAGAAAAGTTTTAAAAAATTAACAACTTTAGTCCATTATTGTGTCCTTTGACTTCAAAGTCCATGTAAAGTTGAATAGAAAGAAGAAAACAAAGGTCAAGCAACCACACTACCTACTTTAGTCAAACATTTTATCACCCTTTTTCCCTTCTCTTTCCAAGAAGTTCACTAGAAATGTGATGAAAAATTAATCTAAATAATTATGTCTATATTACATGCATTTACTAGTAGCTTTCTTGTGTAATTTGTCAATATTTGTACGTGTCATATAGTGTCTTACTATAGTATTTATCTCGTTTCAATTTTATCAAATAACCGCAAAGGAAAATAAGAATAAACCGTCAAATATATCCATTAATAATCGATAATCTCATATTTTTTATTGATCTTTTACAAAATGGTCATATAATTAAAAATAACAGTTGTAATCGATTGCAAAACTCCAATTATATAAAAAATTAAAGAAAAGTTTTCGGTATTTAACAACCTTAGTACAATATTACATAGATCATACTACTAAAATACGAAATTAAAGATCATACAACTATAATAAAATTTGTAATAGACTAAGAACCTTCGATTGTAAGTTTTTTTTTTAAAAGTTTAAAACATTTAACAACCTTTATTGACCATGTAAAGTTGAATAGAATATATGACTCTTTTCTATTTGAGTCTAATGTGAAGAAATATGAATCATAATTATGTCCACATTACATGCACTTACAAATGAGTGGTAAGTGACAACAAAATGGTCCCTAGAAATTTTTTGATATCTTTTTACTTACTGAAATAGATCTAAACGGATTGCTTGGTACCCAGGGTTTCAAAAATGAATTAAAAAGCCATTCTCGGTGACGACATTGTTATCGTCGACGAAAAGGTTGCAAACGTGTATACGGCCCCTGCATAAAACATATTAAAATTTATCTTTAACCCAAAAAAAATGAATTGTTTTCTTATTTAATTTGCTTCTCAATATTGTATAGGTCAAGTTGATAAAGTTTGATCAAAGTTGTTTGTTTGTTTATTTGTCTGAAATTAAATAACAAGCACATTTATCTCATTTTAACTTTATCTAATATCCACAAAGGATCCTCATCCAATTATACAAAAATATCCATAAAACATCTATACAATTAATTTATATACATTATATTTCCTAGTATATATATTGAAAATGGGAGATATTCTTTTATATATATCCACCTATACTTTCGATAGGTAAAAATAACTCTCTAAAGGTTTAATATATTTTATTTGTAAATCTCTTGTATTATTTCATTAATTTATAAAATAAAAAAAAAATTGTAATAGACTATGAAACTTTCGACTATAAATTAAAGGAAAAAATTTAAGCATTTAACAACCTTTTCATTATTGACCTTGAATTCAAAGTCCATGTAAAGTTGACCCTAAAGAAGAAAAAAAATAGTCAAGCAATTACACTATCTATTTGAGTCAACATTTTAACACCTTTTCCCCTTTCCATGAATTTCACTAGAAATGTGAAGGAAAATGAAGTTAAATTAATATTCAAATTATGTCTACATTTCATGCATTTACAAATGAGTGGTGACAAAAAAAAGGGTCCTACTTTGTAAAATTAAAAATAGAAAAAATTATTGATACCATTCACTTCACCAAACATACATACATATATATATATATATATGTATATATATGAAAAATTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG</genome_strand>
        <mrna_strand>TTTTTAAAAAAACAACCT-GGCACTGCAAAACACCTAAAAAGT-AAAAAAAAGCACCAAAATCCTAAATCCAATGTTCTTTTTCAGAGTTTAAAGAGTGAAGAAATTAAAGTTCTGTTTTAGTTTCAGTTTCAGTACGAGGTGATCATCCATCAGTTTATGAATTTTTTGGTGTTGTCAGAACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTAATTTAAAGCCTTTAGGGTTGAAGAAAAACTTGAATCAATGGGTTTTGTGATTGTAATATCACTACCATTGATTCTCTTCATCCTCATTGCAGCCCTTGCTTGTTACCTCTTTGGTAAGTCTCGAGGCCGTCGAGAAGCCGCCATGGTTCCACCATATTATGGACCACCACCACCAGCACCTCCTCCCGGAGTCCTTTCTCCGCCACCCCAAAAATAACATTTGTAAATGTCATGTAGTTAAAATTTGAGCAATACCTTTGTTTGTTTATTTGGGCAAAATGATTGTTATAAAGGCCAAAAGTGAATATTAATGCTTCTTTTTATGTCATACNANGAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNCCGGGGGGGGGGGGGGGGAACCCTTTTCCCCTTTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486198" ref_strand="+" ref_description="SGN-E486198 [cSTE-21-K18]">
      <seq>tttataagttcacaacatttttttaataaaaataatctctagccattttttcttcactattttttttccattacaaatataaccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttcatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaacaaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaagcctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttgcccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59954" stop="67727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60254" g_stop="60339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60340" i_stop="66593" i_length="6254">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.564" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66594" g_stop="67028" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="517" r_length="435" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67427" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="753" r_length="236" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E486198" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60254" e_stop="60339"/>
          <exon e_start="66594" e_stop="67028"/>
          <exon e_start="67192" e_stop="67427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAAGTTCACAACATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTATGTTCATTCAATTTCTACAACTTTACAGGTTATAATACATATCTTTGTGTCTTCATTTTTGGTGAATCTAACTTTAAACAATAGTACATCGCCTTAATTATAGTTCAATTTCTTAATATTAATGATATTAATGCTACGGAATACTAGTGTTTCAGTTGAATCTTCGCCCTCCACACTCTCTTATCAAAGGTCAATAGGTCTCACCTAGGCTTAAAATTGCCTCTTGAGTCCAATGAAATTGTTGGAATCTAATCCAGGAGTCCGAACTCTAAATATTGTTTATAGAAGTATATATTGTGTTTGCGAAGCTTAGGACATAAGGAATAACTTTTGTGAGGGAACTATGGGCATTCGAGCATTCATTGAAAAGGTATGTTAAGGCTAAGCTTCATGCCTTATTTTAACAATACATTTGGGAAATTTCTAAATGTCAAATGTGATATTTTGCTATTCTCTTGCTAGAAAGACCTTATGTGAAAGGCATTGGGATCATAGCTGAATTATTTACATAATTCTAGTATTTGAATATTTCACTCGTTCAAATAAATTGGGTATTCGAAATCTATATGTCATTTTATCGGTTTCGTGTATTATAAGTCCATATGTATGAATTCTTATTCTTCCTTCGGTGGTGTGACTTAAAAATGTTACGGGTGACCCTTATTATTTGTAGTTAGCACTTTTTCCCCACTAAAATTTATTTTAAAAATTCTTTAAAGTAACTCACGGTCTTTAAAACTCTCAAATATAACTTAAATTATTAAATTAGTAGAACACTTGATTCTTTTTAAATTATTTAAGAACTAAGTATATATACGAACTAAGTAAATCACCTTAAACTTGTTATGAACATTTTCAAGGTTAGGCTATCTTTTTAAAACTCGAGTCAAGTTTTCTAGCTTATTTGGAAGAGCATATGAGGTTCGATGAGATGGTTACACATATGAAAGTGATTACACGGGGTTATGATATCAAGAACACAAACGGGCCAAGATTGACAACATGACAACGGTAATATATATGCGTATGAATCCATGACATGACATGTTATGCATTCTACTCCTAAGGTATAATCGGGAGGTATGAGGCTTATTACCTATATTTATACGTATGTGATACCGATAGACACAAGTTGATGAATATACTGTCGGTTAGCTACTAGAAAGCACAACCATTGCTAGCATTTGGTTGGGTATGTCATGCATTTGCATCTATATATACGTATTTACGACATACGATTATATGAGCATACCATGCATATTTAAATAGAAGGAGGCCAAATGTTAGCCATGGAGATTAATTGAGTTTCAGTTTCAAATGATATCTTTTTACCCTTTTATATTAGTTATTGATGATTTCACTTCCGGCTTTACATATCAGTACATTTTTATTCTTACTGACGTCCCATTGCCTGGGGAAGTTGCTTTTTTCGTGCGAGCAAATTCAGGTAGGTATTTTGATTGACTCAACCGCTAAAATTCGGGCTCAGCTGTGAGTTGGTAAGCTCCATCTTATCTTTGAGTTATTAGAGGATATTTACTTTTGTTGTACAATTTAAGCATAGTCGAGTTCTTGTCCCGACATTGCTTATGTCATTCCTAGAGGGTATTGTGGACACAGTATTCTGGATTTTCTTGTATGTTTCAATCTCTAGCCTATAGACTTGGTATGTACGTATATATATGTAAATAGATTTGTCTTCAGTTGCGGCCTTGTCGGCTAGCTAGTACATCTTTGTTTTTTTGACTTGTCTATCATTGTTTGTATGAGTAATTGTCATATAGGTCATACCTTCATGGTCCAGGCTTCCCATTTCAGATGTTGTGTTGGCTGATCTCTGTCTTACTGTTTGGTTAACTAGTATGTTTCACTGGCTAACTCGATTAGATAGATTATTTAAGTGTCAGTTACTCTTCCCTTTTTTGGGGCTCGACACAAACAAAATTCAGAATTTAATAGAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTGTTTCCTTCCAGATAAATTCAAAAATTTAATAAAAATGTATTATACTTAATAATATTGACCAAACATAAATAAATTTGTATCTTTCAGGCAAAACTCAAAATTTAATAAAAATATGTTATACTTAATAATATTGACAAATATAAATAAAATTTGTCTTTTTTAAAAAAAAATTCTAGAATTTAATAGAATATATATTATACTTAAACCAATATAAATAAAATTTGGCTCATTCAAAAACAATTCAAAATTTAATAAAAATACATTATACTTAATAATATTGACCAATATAAATAAAATTTGGCTCATTCAAAACAATTCAGAATTTAATAAAAATACATTGTACTTAATAATATTGACCAATATAAATAAAAATTTCCTCATTCATACAAAATTCAAAATTTAATAAAAATACATTATACTTAATAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATATTAAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATAAAATCTGGAATTTAATAAAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTTCCTCATTCAAACAAAATTCAGAATTTAATAAAAATATATTATACTTAATAATATTGACCAACATAAATAAAATTTGCCTCTTTCAAATAAAATTCAGAATTTAATAAAAGTATATTATATTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATTTAAAACTTAGTAAAAATATATTACACTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATATTTAGTAAAAATATATTATACTTAATAATATTAACCAATATAAATAAAATTTGCTCTTTAAGACAAAATCTAGAATTTAATAAAAATGTATTACACTTAATAACGTTGACCAATATCAATAAAATTTGCCTCATTCAAAGAAAAATCAGAATTTAATAAAAACATATTATAGTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTG</genome_strand>
        <mrna_strand>TTTATAAGTTCACAACA--TTTTT-TTA-ATAAAAATAATCTCTAGCCATTTTTTCTTCACTATTTTTTTTCCATTACAAATATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTCATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGCCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281001" ref_strand="+" ref_description="SGN-E281001 [cLER-7-D15]">
      <seq>cacaacatttttttgttatataaaaataatctctagccatttttttttcactaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59964" stop="61066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60264" g_stop="60766" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E281001" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60264" e_stop="60766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAAC</genome_strand>
        <mrna_strand>CACAACATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209139" ref_strand="+" ref_description="SGN-E209139 [cLEC-38-I18]">
      <seq>acaacattttttttgttatataaaaataatctctagccattttgttttcagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59965" stop="61870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60265" g_stop="60773" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61570" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="543" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E209139" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60265" e_stop="60773"/>
          <exon e_start="61538" e_stop="61570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACA-TTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAAC</genome_strand>
        <mrna_strand>ACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347025" ref_strand="+" ref_description="SGN-E347025 [cTOF-25-M12]">
      <seq>attttttttgttatataaaaataatctctagccattttgttttcagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggcttggtgtgaaagctagtagtgattgggtaatgggatagtatggggaaaggtacagatagttaccgtgtgactactggatttggtggaacatctcattgaagaactaaaaatgggtggtgcactttaaaaggaacttatttaggttcttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59971" stop="61070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60269" g_stop="60773" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E347025" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60269" e_stop="60773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGC-TGGTGTGAAAGCTAGTAGTGATTGGGTAAT-GGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAAT-GGTGGTGCACTTCAAAAGGAACTTATCAG</genome_strand>
        <mrna_strand>ATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGGATAGTATGGGGAAAGGTACAGATAGTTACCGTGTGACTACTGGATTTGGTGGAACATCTCATTGAAGAACTAAAAATGGGTGGTGCACTTTAAAAGGAACTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281175" ref_strand="+" ref_description="SGN-E281175 [cLER-7-H18]">
      <seq>ttttgttatataaaaataatctctagccattttgttttcactaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59974" stop="60918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60274" g_stop="60618" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E281175" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60274" e_stop="60618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTT</genome_strand>
        <mrna_strand>TTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407422" ref_strand="+" ref_description="SGN-E407422 [PPI-7-C18]">
      <seq>tttataagttcacaacattttttttattatcatatatctatatatatacaaataaactctaaccattttctcttcactaaaatttcctctattacttttcttgatccaatggcaccatcaattgcacaaaatggacatgttaatggagaagtagaagaagttttgtgcaagaaatcaattcatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtaaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaactgttgcacaagttgcatccattgcaaatgctgataacaaaactagtggggtcaaagtggaactttctgaaagtgcaagagctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgctcttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcattactaagttgatcaatagcaacattaccccgtgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59954" stop="62021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60280" g_stop="60773" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="521" r_length="479" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61721" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="704" r_length="183" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E407422" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60280" e_stop="60773"/>
          <exon e_start="61538" e_stop="61721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCC-ATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCC</genome_strand>
        <mrna_strand>TATATACAAATAAACTCTAACCATTTTCTCTTCACTAAAATTT--CC--T-CTA-T--TA-C---TTTTCTTGATCCAATGGCACCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTAGAAGAAGTTTTGT--GCAAGAAATCAAT-T-CATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTAAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACTGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAACTAGTGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGAGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCTCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGC-ATTACTAAGTTGATCAATAGCAACATTACCCCGTGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206929" ref_strand="+" ref_description="SGN-E206929 [cLEC-33-G13]">
      <seq>tatataaaaataatctctagccattttgttttcagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59980" stop="61886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60280" g_stop="60773" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61586" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="543" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E206929" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60280" e_stop="60773"/>
          <exon e_start="61538" e_stop="61586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACT</genome_strand>
        <mrna_strand>TATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406263" ref_strand="+" ref_description="SGN-E406263 [PPI-3-A22]">
      <seq>tttataagttcacaacattttttttattatcatatatctatatatataccaaataaactctaaccattttctcttcactaaaatttcctctattacttttcttgatcccaatggcaccatcaattgcacaaaatggacatgttaatggagaagtagaagaagttttgtgcaagaaatcaattcatgatccattgaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtaaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaactgttgcacaagttgcatccattgcaaatgctgataacaaaactagtggggtcaaagtggaactttctgaaagtgcaagagctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgctcttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaatagcaacattaccccgtgtttgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59954" stop="62022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60287" g_stop="60773" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="523" r_length="473" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61722" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="708" r_length="185" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E406263" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60287" e_stop="60773"/>
          <exon e_start="61538" e_stop="61722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCC-ATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCC</genome_strand>
        <mrna_strand>AAATAAACTCTAACCATTTTCTCTTCACTAAAA-TT-TCC--T-C-TAT--TA-CTTTTCTTGAT--CCCAATGGCACCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTAGAAGAAGTTTTGT--GCAAGAAATCAAT-T-CATGATCCATTGAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTAAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACTGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAACTAGTGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGAGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCTCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAATAGCAACATTACCCCGTGTTTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282092" ref_strand="+" ref_description="SGN-E282092 [cLES-4-C3]">
      <seq>ccatttttttttcactaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60000" stop="61870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60300" g_stop="60773" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61570" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="507" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E282092" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60300" e_stop="60773"/>
          <exon e_start="61538" e_stop="61570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAAC</genome_strand>
        <mrna_strand>CCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285531" ref_strand="+" ref_description="SGN-E285531 [cLES-10-E16]">
      <seq>ttttttttcattaaaatttcggattacagatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagccatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60027" stop="62010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60304" g_stop="60773" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61710" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="642" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E285531" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60304" e_stop="60773"/>
          <exon e_start="61538" e_stop="61710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCC</genome_strand>
        <mrna_strand>TTTTTTTTCATTAAAATTTC-GGATTACAGATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358541" ref_strand="+" ref_description="SGN-E358541 [cLHT-22-B19]">
      <seq>taagtaaaatttctccataaccaaatcaaaccattttttgttaatccaatggcatcatcaattgtaccaaaatggaccatgttaatggagaagttgtagtagccatggaattatgtaagaaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaaaatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtgatggggtcaaagtggaactttctgaaagttcaagggctggtgtgaaagctagtagtgattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60011" stop="60962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60311" g_stop="60662" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E358541" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60311" e_stop="60662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTAAAATTTCTCCATTA-CAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTA-CAAAATGGA-CATGTTAATGGAGAA------G---CCATGGATTTATGTAAG-AAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGT</genome_strand>
        <mrna_strand>TAAGTAAAATTTCTCCATAACCAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACCAAAATGGACCATGTTAATGGAGAAGTTGTAGTAGCCATGGAATTATGTAAGAAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTGATGGGGTCAAAGTGGAACTTTCTGAAAGTTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737685" ref_strand="+" ref_description="SGN-E737685 [LC10DD09]">
      <seq>actaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59993" stop="62137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60315" g_stop="60773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="540" r_length="459" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61837" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="840" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="31" polyA_stop="21"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E737685" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60315" e_stop="60773"/>
          <exon e_start="61538" e_stop="61837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGC</genome_strand>
        <mrna_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737370" ref_strand="+" ref_description="SGN-E737370 [LC09CB08]">
      <seq>atttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59993" stop="62120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60315" g_stop="60773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="519" r_length="459" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61820" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="802" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E737370" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60315" e_stop="60773"/>
          <exon e_start="61538" e_stop="61820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAAT</genome_strand>
        <mrna_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727357" ref_strand="+" ref_description="SGN-E727357 [LA14BH06]">
      <seq>actaatcatagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttaatccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtccccgttgtcatacattgctggtttgctcactggcaagcccaactccaaagctgttggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59993" stop="62117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60315" g_stop="60773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="540" r_length="459" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61817" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="821" r_length="281" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="31" polyA_stop="21"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E727357" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60315" e_stop="60773"/>
          <exon e_start="61538" e_stop="61817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGT-CCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCT</genome_strand>
        <mrna_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAAGCCCAACTCCAAAGCTGTTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735651" ref_strand="+" ref_description="SGN-E735651 [LC02BG08]">
      <seq>cgctcttagttcacaacatatttttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgtatggtccaatggcatcatcaatcgtacaaaatggacatgttaatgaataagctatggatttatgtaacaaataaattaatgttaatgatccattgaattgggaaatggctgctgaatcataaagagggagtcatttggatgaagtgaaaaagatggcggatgaatttataaagccaattgagaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgatgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggagtgaaaactaatagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactcccaggctgttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59993" stop="62116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60315" g_stop="60773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="539" r_length="460" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61816" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="818" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="29" polyA_stop="19"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E735651" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60315" e_stop="60773"/>
          <exon e_start="61538" e_stop="61816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGT-TAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACC</genome_strand>
        <mrna_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTATGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGAATAAGCTATGGATTTATGTAACAAATAAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATAAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGCGGATGAATTTATAAAGCCAATTGAGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGATGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGAGTGAAAACTAATAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCCAGGCTGTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327231" ref_strand="+" ref_description="SGN-E327231 [cTOC-19-K9]">
      <seq>ctaatcatagttcacaacatatttttttatatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttangatcaatactctgcttcaaggctactctggcattagatttgaaattttggaaagcatttactagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgntgtcatacattgctgggttgctcactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59993" stop="62090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60315" g_stop="60773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="537" r_length="459" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61790" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="790" r_length="253" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E327231" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60315" e_stop="60773"/>
          <exon e_start="61538" e_stop="61790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGG-AAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGC</genome_strand>
        <mrna_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTANGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAAGCATTTACT-AGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGNTGTCATACATTGCTGGGTTGCTCACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554212" ref_strand="+" ref_description="SGN-E554212 [cTSC-3-J15]">
      <seq>cacaacatatttttttttaatatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaaatcaaaccattttttgttggtccaatggcatcatcaatcgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59993" stop="62022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60315" g_stop="60773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="526" r_length="459" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61722" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="711" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="18" polyA_stop="8"/>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E554212" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60315" e_stop="60773"/>
          <exon e_start="61538" e_stop="61722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCC</genome_strand>
        <mrna_strand>TAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATCGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333685" ref_strand="+" ref_description="SGN-E333685 [cTOD-22-A23]">
      <seq>tcaattgtacaaaatggacatgttaatggagaagctatggatttatgtaagaaatcaattaatgttaatgatccattgaattgggaaatggctgctgaatcattaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcangcctaactccaaggctgttggacctaatggtgagaaacttaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60067" stop="62139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60367" g_stop="60773" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61839" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="709" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E333685" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60367" e_stop="60773"/>
          <exon e_start="61538" e_stop="61839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTG</genome_strand>
        <mrna_strand>TCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCANGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406221" ref_strand="+" ref_description="SGN-E406221 [PPI-3-I13]">
      <seq>gttttgtgccaagagatcaattcatgctcccttgaattgggaaatggctgctgaattctttaagagggagtcatttggaatgaagtaaaaaagacaggtggatgaaatttaaaaagcccaattgtgaaaacttgggggtgaaactttaaccttgttgcacaagttgcatccattgcaaatgctgataacaaaactagtggggtcaaagtggaactttctgaaagtgcaagaactggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgctcttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcagggctactctggcattagatttgaaatcttngaaagcattactaagttgatcaatagcaacattacccccgtgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60131" stop="62021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60434" g_stop="60773" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="371" r_length="348" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61721" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="556" r_length="185" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E406221" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60434" e_stop="60773"/>
          <exon e_start="61538" e_stop="61721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCATTGAATTGGGAAATGGCTGCTGAA-TCATTAAGAGGGAGTCATTTGG-ATGAAGTGAAAAA-AATGGTGGATG-AATTTAGAAAG-CCAATTGTGAAA-CTTGGGGGTGAAACTTTAA-C-AGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTA-CCCCGTGTTTGCCC</genome_strand>
        <mrna_strand>ATGCTCCCTTGAATTGGGAAATGGCTGCTGAATTCTTTAAGAGGGAGTCATTTGGAATGAAGTAAAAAAGACAGGTGGATGAAATTTAAAAAGCCCAATTGTGAAAACTTGGGGGTGAAACTTTAACCTTGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAACTAGTGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGAACTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCTCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAGGGCTACTCTGGCATTAGATTTGAAATCTTNGAAAGCATTACTAAGTTGATCAATAGCAACATTACCCCCGTGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706701" ref_strand="+" ref_description="SGN-E706701 [FA30CG06]">
      <seq>attaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60168" stop="62285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60468" g_stop="60773" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61985" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="754" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E706701" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60468" e_stop="60773"/>
          <exon e_start="61538" e_stop="61985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</genome_strand>
        <mrna_strand>ATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578430" ref_strand="+" ref_description="SGN-E578430 [LE12DH06]">
      <seq>gagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60173" stop="62254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60473" g_stop="60773" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61954" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="718" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E578430" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60473" e_stop="60773"/>
          <exon e_start="61538" e_stop="61954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACT</genome_strand>
        <mrna_strand>GAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582142" ref_strand="+" ref_description="SGN-E582142 [7775]">
      <seq>ccgggctgcaggaagtgaaaacagatggtggatgacatttagaaagccaattgtgaaacttgggggtgaaacttttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaacagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60185" stop="61995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60479" g_stop="60773" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61695" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="457" r_length="158" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E582142" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60479" e_stop="60773"/>
          <exon e_start="61538" e_stop="61695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTGGATGAAGTGAAAA-AAATGGTGGATGA-ATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAAC-TTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAA-AGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCA</genome_strand>
        <mrna_strand>CCGGGCTGCAGGAAGTGAAAACAGATGGTGGATGACATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAACAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575416" ref_strand="+" ref_description="SGN-E575416 [35037]">
      <seq>agtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagttcaagggctggtgtgaaagctagtaaaaaaagggtgatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaacaaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaaacactctgcttcaaggctactctggcattagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60192" stop="61964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60492" g_stop="60773" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61664" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="410" r_length="128" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E575416" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60492" e_stop="60773"/>
          <exon e_start="61538" e_stop="61664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATC-AATACTCTGCTTCAAGGCTACTCTGGCATTAGATTT</genome_strand>
        <mrna_strand>AGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTTCAAGGGCTGGTGTGAAAGCTAGTAAAAAAAGGGTGATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582017" ref_strand="+" ref_description="SGN-E582017 [7650]">
      <seq>gtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggttgagaaacttaatgctgaggaagcgtcccgcgtcagctggtggttagtggtggatttttccgagttgcaacctaaagaaagacttgcacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60193" stop="62155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60493" g_stop="60773" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61913" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="661" r_length="380" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E582017" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60493" e_stop="60773"/>
          <exon e_start="61538" e_stop="61913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGG-TGAGAAACTTAATGCTGAGGAAGCGTTCCGCGT-GGCTGGT-GTTACTAGTGGATTTTT-CGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTG</genome_strand>
        <mrna_strand>GTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTTGAGAAACTTAATGCTGAGGAAGCGTCCCGCGTCAGCTGGTGGTTAGTGGTGGATTTTTCCGAGTTGCAACCTAAAGAAAGACTTGCACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257507" ref_strand="+" ref_description="SGN-E257507 [cLEG-45-E3]">
      <seq>atggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactttgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccctccgtgggacgatcactgcctcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcangcctaattcaaaggctgttggacctaatggcgagaagcttaatgctgaggaagcgtttcatgtggctggtgttactagtggatttttcgagttgcagcctaaggaaagacttgcacttgtgaatggaactgcagttggttctggtatggcatcaatggtactgtttgagtcaacattcttgctgtcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60202" stop="62285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60502" g_stop="60773" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61985" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="719" r_length="447" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E257507" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60502" e_stop="60773"/>
          <exon e_start="61538" e_stop="61985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</genome_strand>
        <mrna_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCANGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAAGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGT-CAACATTCTTGCTGTCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261807" ref_strand="+" ref_description="SGN-E261807 [cLEG-61-O7]">
      <seq>atggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactttgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccctccgtgggacgatcactgcctccggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaattcaaaggctgttggacctaatggcgagaagcttaatgctgaagaagcgtttcatgtggctggtggtactaatggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60202" stop="62179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60502" g_stop="60773" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61879" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="614" r_length="342" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E261807" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60502" e_stop="60773"/>
          <exon e_start="61538" e_stop="61879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTT</genome_strand>
        <mrna_strand>ATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCCGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAAGAAGCGTTTCATGTGGCTGGTGGTACTAATGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305037" ref_strand="+" ref_description="SGN-E305037 [cLEX-10-H15]">
      <seq>ttgtgaaacttgggggtgaaactttaacagttgcacaagttgcatccattgcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60227" stop="62179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60527" g_stop="60773" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61879" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="589" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E305037" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60527" e_stop="60773"/>
          <exon e_start="61538" e_stop="61879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTT</genome_strand>
        <mrna_strand>TTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332828" ref_strand="+" ref_description="SGN-E332828 [cTOD-18-F14]">
      <seq>gcaaatgttgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttattaggttcttaaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactttgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgcccctccgtgggacgatcactgcctcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaattcaaaggctgttggacctaatggcgagaagcttaatgctgaggaagcgtttcatgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggaactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60277" stop="62285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60577" g_stop="60773" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61985" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="645" r_length="448" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E332828" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60577" e_stop="60773"/>
          <exon e_start="61538" e_stop="61985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</genome_strand>
        <mrna_strand>GCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333407" ref_strand="+" ref_description="SGN-E333407 [cTOD-20-L5]">
      <seq>aaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggtgcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60292" stop="62365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60592" g_stop="60773" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61588" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="233" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61589" i_stop="61717" i_length="129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61718" g_stop="62065" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="581" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E333407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60592" e_stop="60773"/>
          <exon e_start="61538" e_stop="61588"/>
          <exon e_start="61718" e_stop="62065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCA</genome_strand>
        <mrna_strand>AAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTT.................................................................................................................................GCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454983" ref_strand="+" ref_description="SGN-E454983 [cSTS-24-P24]">
      <seq>gtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60340" stop="62455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60640" g_stop="60773" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="62155" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="752" r_length="618" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E454983" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60640" e_stop="60773"/>
          <exon e_start="61538" e_stop="62155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAAT</genome_strand>
        <mrna_strand>GTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340268" ref_strand="+" ref_description="SGN-E340268 [cTOF-2-L16]">
      <seq>tgaaagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60341" stop="62439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60641" g_stop="60773" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="62139" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="735" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E340268" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60641" e_stop="60773"/>
          <exon e_start="61538" e_stop="62139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTC</genome_strand>
        <mrna_strand>TGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332389" ref_strand="+" ref_description="SGN-E332389 [cTOD-17-M5]">
      <seq>aagctagtagtgattgggtaatggatagtatggggaaaggtacagatagttacggtgtgactactggatttggagcaacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60344" stop="62287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60644" g_stop="60773" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61987" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="580" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E332389" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60644" e_stop="60773"/>
          <exon e_start="61538" e_stop="61987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGA</genome_strand>
        <mrna_strand>AAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466767" ref_strand="+" ref_description="SGN-E466767 [cPRO-26-C5]">
      <seq>gatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60367" stop="62101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60667" g_stop="60773" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61801" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="371" r_length="264" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E466767" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60667" e_stop="60773"/>
          <exon e_start="61538" e_stop="61801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTC</genome_strand>
        <mrna_strand>GATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208258" ref_strand="+" ref_description="SGN-E208258 [cLEC-37-P15]">
      <seq>ggatttggagcaacatctcatagaagaacaaaaaatggtggtgctcttaaaaaagaacttattaggttcttgaatgctggagtttttggtaatggaatagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgagatcttggaagcaatcactaagttgatcaatagcaacatcaccccgtgtttgcctctccgtggcacgatcactgcctcgggtgatctcgtccctttgtcctatattgctggtttgctcactggcagacctaattccaaggctgttggacccaatggtgagaaacttaatgctgaggaagctttctgcgtggctggtattagtggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggcacagcagttggttctgctatggcatcaatagtcctgtttgagtccaatatccttgctcttatgtctgaagttttatcagcgatatttgctgaagtgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60409" stop="62322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60709" g_stop="60773" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="62022" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="550" r_length="485" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E208258" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60709" e_stop="60773"/>
          <exon e_start="61538" e_stop="62022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACG</genome_strand>
        <mrna_strand>GGATTTGGAGCAACATCTCATAGAAGAACAAAAAATGGTGGTGCTCTTAAAAAAGAACTTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGTAATGGAATAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAGATCTTGGAAGCAATCACTAAGTTGATCAATAGCAACATCACCCCGTGTTTGCCTCTCCGTGGCACGATCACTGCCTCGGGTGATCTCGTCCCTTTGTCCTATATTGCTGGTTTGCTCACTGGCAGACCTAATTCCAAGGCTGTTGGACCCAATGGTGAGAAACTTAATGCTGAGGAAGCTTTCTGCGTGGCTGGTATTAGTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGCTATGGCATCAATAGTCCTGTTTGAGTCCAATATCCTTGCTCTTATGTCTGAAGTTTTATCAGCGATATTTGCTGAAGTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206146" ref_strand="+" ref_description="SGN-E206146 [cLEC-29-J12]">
      <seq>aacatctcatagaagaactaaaaatggtggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60420" stop="62353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60720" g_stop="60773" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="62053" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="570" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E206146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60720" e_stop="60773"/>
          <exon e_start="61538" e_stop="62053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACA</genome_strand>
        <mrna_strand>AACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289786" ref_strand="+" ref_description="SGN-E289786 [cLET-9-G12]">
      <seq>aactaaaaatggcggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60435" stop="62181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60735" g_stop="60773" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="61881" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="383" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E289786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60735" e_stop="60773"/>
          <exon e_start="61538" e_stop="61881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCG</genome_strand>
        <mrna_strand>AACTAAAAATGGCGGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207599" ref_strand="+" ref_description="SGN-E207599 [cLEC-32-A16]">
      <seq>ggtgcacttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggataatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60448" stop="62363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60748" g_stop="60773" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="62063" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="551" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E207599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60748" e_stop="60773"/>
          <exon e_start="61538" e_stop="62063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAG</genome_strand>
        <mrna_strand>GGTGCACTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGAT-AATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738936" ref_strand="+" ref_description="SGN-E738936 [LC15CA10]">
      <seq>gcttttcaaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="60451" stop="62575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60751" g_stop="60773" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61538" g_stop="62275" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="761" r_length="738" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E738936" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60751" e_stop="60773"/>
          <exon e_start="61538" e_stop="62275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTCAAAAGGAACTTATCAGGTAAATTTTTTTTTTATATATATATACACTCGATAACGTAAAGAATTTTTATATTTTTTTCGTATTTATAGTTTGTTATGTCAATTATGATATATATCTATAGTTTTTCTTCATGTGATCTAATAGTAGTGTTAAGTTTACTACAATTATTTGATTTGATAGCGTAAAAATTCTTTTTTAATAAATAGCAATTTATTTATTTAATTTCGAATTATCATAGTAAAATTTGATTATTGAAAGCTATGTATTTAATTATACAAGTTGAACCACCCTATTGATTTGTGCATGTGGGGTTTGGGAAAAGTTAGTGACTGGGTGGTAGGTGAGGGAGATTTTAGTCATTTTACTTCCTTCAATTTTTGTTTTTTTATCAACTTGGACGTTAGTAAGTAATTTTTTTCAAATTGGTTTTCTTCATTTATATGTGAATAAATAATTCTAGTAAGAAATCTTTATTTTGAATAAATAAAACTATAGTATCTTGTGTTTTCATCACAAAAATATATGAGACAGATTGTTCAACTTTTTAAGATGTAATGTTAGTTCCCATGTGCCATCTCTTGTCAGATATGTATTTTATAGTGTCACATATAAAAATATTATAAATCAGTATTTTTTTTTATAATCAAATTTGTGCTCATGATCTTTATTTGTACCTTGTAAGTCTAGTACAAACAAACTTGTAAGTCTACTTGATGACACATGTTAGTAGAATTTTAGTTAAAAATGTGATGTTGATGAATATTATGATTTATTTTCTTCAGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTC</genome_strand>
        <mrna_strand>GCTTTTCAAAAGGAACTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303178" ref_strand="+" ref_description="SGN-E303178 [cLEX-5-H4]">
      <seq>aggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgctgtcatacattggtgggttgctcactggcaggcctaactccaaggctgctggacctaatggtgagaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61236" stop="62133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61536" g_stop="61833" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E303178" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61536" e_stop="61833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTA</genome_strand>
        <mrna_strand>AGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGCTGTCATACATTGGTGGGTTGCTCACTGGCAGGCCTAACTCCAAGGCTGCTGGACCTAATGGTGAGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268602" ref_strand="+" ref_description="SGN-E268602 [cLEI-13-P3]">
      <seq>caaaaggaacttatcaggttcttgaatgctggagtttttggaaatggaacagaatcatctcatactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61234" stop="62372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61538" g_stop="62072" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="552" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E268602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61538" e_stop="62072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCT</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465083" ref_strand="+" ref_description="SGN-E465083 [cPRO-20-E3]">
      <seq>attaggttcttgaatgctggagtttttgggaatggaacagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttgcccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggagagaaacttaatgctgaagaagcattccgcgtggctggtgttactggtggatttttccagttgcagcctaaagaaagacttgcacttgtgaatggtacaacaattggttctggtatggcatcaatggtcctggttgattccaacattcttgctggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61233" stop="62281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61538" g_stop="61981" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="449" r_length="444" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E465083" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61538" e_stop="61981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCAT</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGAGAGAAACTTAATGCTGAAGAAGCATTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCCAGTTGCAGCCTAAAGAAAGACTTGCACTTGTGAATGGTACAACAATTGGTTCTGGTATGGCATCAATGGTCCTGGTTGATTCCAACATTCTTGCTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482437" ref_strand="+" ref_description="SGN-E482437 [cSTD-22-O19]">
      <seq>gttcttgaatgctggagtttttgggaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgattaacagcaacatcaccccgtgtttgcccctccgtggaacggtcactgcctcaggtgatcttgtccctctgtcatacattgctggtttgctcactggcaggcctaattccaaggctgttggaccaaatggtgagaaattcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61238" stop="62137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61538" g_stop="61837" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E482437" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61538" e_stop="61837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGC</genome_strand>
        <mrna_strand>GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATTAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGAACGGTCACTGCCTCAGGTGATCTTGTCCCTCTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCCAAGGCTGTTGGACCAAATGGTGAGAAATTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477790" ref_strand="+" ref_description="SGN-E477790 [cSTD-1-D6]">
      <seq>ttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttaccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcgggtgatcttgtccctctttcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggctattttcgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaccaagcaagatcgttatgctctccgacatctncacagtggcttggccctcaattgaagtcatccgtgcagcaactaagatgattgagagggagataaactcagtgaacgacaacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61239" stop="62593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61539" g_stop="62293" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E477790" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61539" e_stop="62293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATT</genome_strand>
        <mrna_strand>TTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTACCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCGGGTGATCTTGTCCCTCTTTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCTATTTTCGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTC-AAAACC-AAGCAAGATCGTTATGCTCTCCG-ACATCTNCACAGTGGCTTGGCCCTC-AATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATAAACTCAGTGAACGACAACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460574" ref_strand="+" ref_description="SGN-E460574 [cPRO-31-P17]">
      <seq>gtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaccaaaagcagatcgttatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61254" stop="62493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61554" g_stop="62193" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E460574" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61554" e_stop="62193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTC</genome_strand>
        <mrna_strand>GTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAACCAAAAGC-AGATCGTTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452353" ref_strand="+" ref_description="SGN-E452353 [cSTS-16-D13]">
      <seq>acagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61269" stop="62559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61569" g_stop="62259" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E452353" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61569" e_stop="62259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTG</genome_strand>
        <mrna_strand>ACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451960" ref_strand="+" ref_description="SGN-E451960 [cSTS-15-O7]">
      <seq>cagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttacccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactggtggattttttgagttgcagcctaaagaaggacttgcacttgtgaatggcacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgttatgtctgaagttttatcagcgatttttgctgaagtgatgaatggaaagcccgaattcacagactatttgacacacaagttgaagcatcaccctggtcagattgaggcagctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaccaaagcaagatcgntatgctctccgaacatcntccacatggcttggccctcaaattgaagtcatacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61270" stop="62542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61570" g_stop="62242" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E451960" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61570" e_stop="62242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATC-TCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGC</genome_strand>
        <mrna_strand>CAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTACCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTTGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACAGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCAGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTC-AAAACCAAAGCAAGATCGNTATGCTCTCCGAACATCNTCCACA-TGGCTTGGCCCTCAAATTGAAGTCATACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455947" ref_strand="+" ref_description="SGN-E455947 [cSTS-28-G5]">
      <seq>cactttgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaatagcaacattaccccgtgtttgcccctccgtggaacggtcactgcctcaggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaattccaaggctgttggacccaatggtgagaaacttgacgctgatgaagcgttccgtgtggctggtgttagtggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtacagcagttggttccggtatggcatcaattgtcctgtatgactccaacattcttgctgttatgtctgaagttntatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaagcaagatcgttatgctctccgaacatctnncacatggcttggccctcagattgaagtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61284" stop="62504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61583" g_stop="62238" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E455947" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61583" e_stop="62238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCT-CCACAGTGGCTTGGACCTCAAATTGAAGTCATCC</genome_strand>
        <mrna_strand>CACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAATAGCAACATTACCCCGTGTTTGCCCCTCCGTGGAACGGTCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCCAAGGCTGTTGGACCCAATGGTGAGAAACTTGACGCTGATGAAGCGTTCCGTGTGGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCCGGTATGGCATCAATTGTCCTGTATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTNTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACC-AAGCAAGATCGTTATGCTCTCCGAACATCTNNCACA-TGGCTTGGCCCTCAGATTGAAGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228199" ref_strand="+" ref_description="SGN-E228199 [cLED-2-A12]">
      <seq>tactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgcttaggaagcgttccgcgtggctggtgttactagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61283" stop="62173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61583" g_stop="61873" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E228199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61583" e_stop="61873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGG</genome_strand>
        <mrna_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTTAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298210" ref_strand="+" ref_description="SGN-E298210 [cLEW-9-C12]">
      <seq>aagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcatttggttctggtatggcatcaatggtactgttgagagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61304" stop="62435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61604" g_stop="62135" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E298210" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61604" e_stop="62135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTT-TGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCA</genome_strand>
        <mrna_strand>AAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCATTTGGTTCTGGTATGGCATCAATGGTACTGTTGAGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301501" ref_strand="+" ref_description="SGN-E301501 [cLEW-23-K15]">
      <seq>taggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaagctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61322" stop="62482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61622" g_stop="62182" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E301501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61622" e_stop="62182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGA</genome_strand>
        <mrna_strand>TAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAAGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288716" ref_strand="+" ref_description="SGN-E288716 [cLES-8-J7]">
      <seq>tggcattagatttgaaattttggaagcttttactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgtacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61352" stop="62270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61652" g_stop="61970" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E288716" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61652" e_stop="61970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCC-AACATT</genome_strand>
        <mrna_strand>TGGCATTAGATTTGAAATTTTGGAAGCTTTTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGTACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210324" ref_strand="+" ref_description="SGN-E210324 [cLEC-35-M18]">
      <seq>aattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61367" stop="62537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61667" g_stop="62237" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E210324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61667" e_stop="62237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATC</genome_strand>
        <mrna_strand>AATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706559" ref_strand="+" ref_description="SGN-E706559 [FA30BC01]">
      <seq>ctaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcccaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcangaaggatccaagcttggattatggactcaagggagctgaaatttgcatggcttcttactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61384" stop="62836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61684" g_stop="62536" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E706559" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61684" e_stop="62536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTC</genome_strand>
        <mrna_strand>CTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCCAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCANGAAGG-ATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTTGCATGGCTTCTTACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210268" ref_strand="+" ref_description="SGN-E210268 [cLEC-35-G21]">
      <seq>tgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61390" stop="62416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61690" g_stop="62117" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E210268" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61690" e_stop="62117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGC</genome_strand>
        <mrna_strand>TGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200923" ref_strand="+" ref_description="SGN-E200923 [cLEC-5-D16]">
      <seq>ttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61416" stop="62300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61716" g_stop="62000" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E200923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61716" e_stop="62000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCG</genome_strand>
        <mrna_strand>TTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459463" ref_strand="+" ref_description="SGN-E459463 [cPRO-27-N24]">
      <seq>gcacaatcactgcctcaggtgatcttgtccctctgtcctacatatctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccnagcttggactatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61429" stop="62799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61729" g_stop="62499" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E459463" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61729" e_stop="62499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGAC</genome_strand>
        <mrna_strand>GCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATATCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCNAGCTTGGACTATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336638" ref_strand="+" ref_description="SGN-E336638 [cTOE-4-L3]">
      <seq>acgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61431" stop="62501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61731" g_stop="62201" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E336638" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61731" e_stop="62201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACA</genome_strand>
        <mrna_strand>ACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305306" ref_strand="+" ref_description="SGN-E305306 [cLEX-15-H5]">
      <seq>tgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61439" stop="62471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61739" g_stop="62171" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E305306" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61739" e_stop="62171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAA</genome_strand>
        <mrna_strand>TGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309809" ref_strand="+" ref_description="SGN-E309809 [cLEZ-10-K5]">
      <seq>gcatccggtgatcttgtccctttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgtcggacctaatggtgagaaacttaatgctgatgaagcgttccgcgtggctggtgttactactggatttttcgagttgcatcctaaggaaggacttgcacttgtgaatggtactgcagttggctctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgccatcgattctcgctgaaatgatgaacggaacgcctgaattcactgactatttgacacacaagttgtagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcaaaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61440" stop="62529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61740" g_stop="62229" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E309809" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61740" e_stop="62229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTG</genome_strand>
        <mrna_strand>GCATCCGGTGATCTTGTCCCTTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTCGGACCTAATGGTGAGAAACTTAATGCTGATGAAGCGTTCCGCGTGGCTGGTGTTACTACTGGATTTTTCGAGTTGCATCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGCTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGCCATCGATTCTCGCTGAAATGATGAACGGAACGCCTGAATTCACTGACTATTTGACACACAAGTTGTAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAAAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479048" ref_strand="+" ref_description="SGN-E479048 [cSTD-8-I6]">
      <seq>gatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggagagaaacttaatgctgaggaagcattccgcgtggctggtgttactggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaactaagatgattgagagggagatcaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcangaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61449" stop="62856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61749" g_stop="62556" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E479048" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61749" e_stop="62556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAA</genome_strand>
        <mrna_strand>GATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGAGAGAAACTTAATGCTGAGGAAGCATTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACTAAGATGATTGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCANGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304799" ref_strand="+" ref_description="SGN-E304799 [cLEX-10-I16]">
      <seq>tcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61451" stop="62521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61751" g_stop="62221" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304799" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61751" e_stop="62221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACC</genome_strand>
        <mrna_strand>TCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464969" ref_strand="+" ref_description="SGN-E464969 [cPRO-19-P9]">
      <seq>cttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61452" stop="62610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61752" g_stop="62310" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E464969" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61752" e_stop="62310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAA</genome_strand>
        <mrna_strand>CTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304260" ref_strand="+" ref_description="SGN-E304260 [cLEX-6-N4]">
      <seq>tcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61456" stop="62613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61756" g_stop="62313" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61756" e_stop="62313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACA</genome_strand>
        <mrna_strand>TCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228285" ref_strand="+" ref_description="SGN-E228285 [cLED-2-L2]">
      <seq>cccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61457" stop="62585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61757" g_stop="62285" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E228285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61757" e_stop="62285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGAC</genome_strand>
        <mrna_strand>CCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303794" ref_strand="+" ref_description="SGN-E303794 [cLEX-4-O2]">
      <seq>gctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatcttcacagtggcttggacctcaaattgaagtcattcgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61473" stop="62603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61773" g_stop="62303" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E303794" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61773" e_stop="62303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTT</genome_strand>
        <mrna_strand>GCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTTCACAGTGGCTTGGACCTCAAATTGAAGTCATTCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212083" ref_strand="+" ref_description="SGN-E212083 [cLEC-75-I9]">
      <seq>tcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattancacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaatttgcatggcttcttactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61483" stop="62836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61783" g_stop="62536" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E212083" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61783" e_stop="62536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTC</genome_strand>
        <mrna_strand>TCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTANCACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTTGCATGGCTTCTTACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414513" ref_strand="+" ref_description="SGN-E414513 [STM-19-N5]">
      <seq>cctcgtgccgggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtatgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatcttcacagtggcttggccctcaaattgaagtcatccgtgcagcaactaacatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61500" stop="62733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61794" g_stop="62433" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E414513" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61794" e_stop="62433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACG</genome_strand>
        <mrna_strand>CCTCGTGCC-GGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTATGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTTCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAACATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448947" ref_strand="+" ref_description="SGN-E448947 [cSTS-4-N14]">
      <seq>ctccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61499" stop="62726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61799" g_stop="62426" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E448947" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61799" e_stop="62426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTT</genome_strand>
        <mrna_strand>CTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558707" ref_strand="+" ref_description="SGN-E558707 [18090]">
      <seq>aatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaaggcttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61518" stop="62677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61818" g_stop="62377" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E558707" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61818" e_stop="62377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATAC-AAGATT</genome_strand>
        <mrna_strand>AATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAAGGCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457505" ref_strand="+" ref_description="SGN-E457505 [cPRO-2-L18]">
      <seq>atggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacnagattgggcccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61519" stop="62686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61819" g_stop="62386" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E457505" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61819" e_stop="62386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATT-GGCCCTTGC</genome_strand>
        <mrna_strand>ATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACNAGATTGGGCCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291356" ref_strand="+" ref_description="SGN-E291356 [cLET-2-F19]">
      <seq>ttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61548" stop="62612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61848" g_stop="62312" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E291356" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61848" e_stop="62312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAAC</genome_strand>
        <mrna_strand>TTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449505" ref_strand="+" ref_description="SGN-E449505 [cSTS-6-P5]">
      <seq>tccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaatgacaatccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61549" stop="62706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61849" g_stop="62406" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E449505" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61849" e_stop="62406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGT</genome_strand>
        <mrna_strand>TCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAATGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298063" ref_strand="+" ref_description="SGN-E298063 [cLEW-12-A9]">
      <seq>tggctggtgttactagtggatttttcgagttgcagcctaaggaaggactggcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcattgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgcgaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61555" stop="62747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61855" g_stop="62447" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E298063" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61855" e_stop="62447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</genome_strand>
        <mrna_strand>TGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTGGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCATTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGCGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212120" ref_strand="+" ref_description="SGN-E212120 [cLEC-75-D17]">
      <seq>ctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61558" stop="62741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61858" g_stop="62441" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E212120" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61858" e_stop="62441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTAC</genome_strand>
        <mrna_strand>CTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304081" ref_strand="+" ref_description="SGN-E304081 [cLEX-6-H1]">
      <seq>tggtgttactagtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61559" stop="62611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61859" g_stop="62311" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304081" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61859" e_stop="62311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAA</genome_strand>
        <mrna_strand>TGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448416" ref_strand="+" ref_description="SGN-E448416 [cSTS-2-L16]">
      <seq>gtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcangaaggaatccaagcttggactatggactcaaaggagctgaaattgcaatggcttcttactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61570" stop="62835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61870" g_stop="62535" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E448416" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61870" e_stop="62535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCT</genome_strand>
        <mrna_strand>GTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCANGAAGGAATCCAAGCTTGGACTATGGACTCAAAGGAGCTGAAATTGCAATGGCTTCTTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241239" ref_strand="+" ref_description="SGN-E241239 [cLED-26-G12]">
      <seq>tttttcgagttgcatcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61575" stop="62600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61875" g_stop="62300" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E241239" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61875" e_stop="62300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGAT</genome_strand>
        <mrna_strand>TTTTTCGAGTTGCATCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200348" ref_strand="+" ref_description="SGN-E200348 [cLEC-1-M11]">
      <seq>agcctaaggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61588" stop="62633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61888" g_stop="62333" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E200348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61888" e_stop="62333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAAC</genome_strand>
        <mrna_strand>AGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406348" ref_strand="+" ref_description="SGN-E406348 [PPI-3-D13]">
      <seq>gcctaaggaaggacttgcacttgtgaatggtacagcagttggttccggtatggcatcaattgtcctgtatgactccaacattcttgctgttatgtctgaagttttatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaatgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61589" stop="62853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61889" g_stop="62553" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E406348" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61889" e_stop="62553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTG</genome_strand>
        <mrna_strand>GCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCCGGTATGGCATCAATTGTCCTGTATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAATGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305492" ref_strand="+" ref_description="SGN-E305492 [cLEX-15-F20]">
      <seq>ggaaggacttgcacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagccattttctctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctgtccagattgaggctgctgctattatggaacacattctggatggaagctcttatgtcaaggcagctcacaagctccatgaaatggatcctcttcaacaaccaaagcaagatcgttatgctctttgaacatctccacagtggctcggacctcacattgaagtcatccgtgcaccaactcagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaatgccttacacggaggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61595" stop="62634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61895" g_stop="62334" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E305492" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61895" e_stop="62334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACT</genome_strand>
        <mrna_strand>GGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCCATTTTCTCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGTCCAGATTGAGGCTGCTGCTATTATGGAACACATTCTGGATGGAAGCTCTTATGTCAAGGCAGCTCACAAGCTCCATGAAATGGATCCTCTTCAACAACCAAAGCAAGATCGTTATGCTCTTTGAACATCTCCACAGTGGCTCGGACCTCACATTGAAGTCATCCGTGCACCAACTCAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAATGCCTTACACGGAGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470985" ref_strand="+" ref_description="SGN-E470985 [cSTB-21-D14]">
      <seq>gaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaatgacaatccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61596" stop="62724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61896" g_stop="62424" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E470985" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61896" e_stop="62424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAAC</genome_strand>
        <mrna_strand>GAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAATGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205183" ref_strand="+" ref_description="SGN-E205183 [cLEC-16-N19]">
      <seq>acttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61607" stop="62705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61907" g_stop="62405" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E205183" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61907" e_stop="62405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATG</genome_strand>
        <mrna_strand>ACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404522" ref_strand="+" ref_description="SGN-E404522 [PPC-14-E22]">
      <seq>gcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgattttcgctgaagtgatgaatggaaaacccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaactaagatgattgagagggagatcaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaagccttacacggtggcaacttccaaagcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61623" stop="62705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61923" g_stop="62405" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E404522" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61923" e_stop="62405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATG</genome_strand>
        <mrna_strand>GCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTCGCTGAAGTGATGAATGGAAAACCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACTAAGATGATTGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAAGCCTTACACGGTGGCAACTTCCAAAGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323308" ref_strand="+" ref_description="SGN-E323308 [cTOB-28-L8]">
      <seq>tggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgcccagctatcgacttaaggcatttggaggaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61628" stop="63031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61928" g_stop="62731" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E323308" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61928" e_stop="62731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTT</genome_strand>
        <mrna_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCCAGCTATCGACTTAAGGCATTTGGAGGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320183" ref_strand="+" ref_description="SGN-E320183 [cTOB-21-C19]">
      <seq>tggttctggtatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttncattccttgcaaatccagtgactaaccatgtcccaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaacgctgaggctgtagacatcttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61628" stop="62965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61928" g_stop="62665" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E320183" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61928" e_stop="62665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCT</genome_strand>
        <mrna_strand>TGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTNCATTCCTTGCAAATCCAGTGACTAACCATGTCCCAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAA-CGCTGAGGCTGTAGACATCTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305836" ref_strand="+" ref_description="SGN-E305836 [cLEX-14-B10]">
      <seq>tatggcatcaatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61637" stop="62674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61937" g_stop="62374" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E305836" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61937" e_stop="62374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAG</genome_strand>
        <mrna_strand>TATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204856" ref_strand="+" ref_description="SGN-E204856 [cLEC-14-J19]">
      <seq>aatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctacatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgcgctccgaacatctccacaatggcttggacctcaaattgaagtcatccgtgcagcaactaagatgatcgagagggaaatcaactcagtgaacgacaatccattgattgacgtttcaagaaacaaggccttacatggtggcaacttccaaggaacccctatcggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61646" stop="62741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61946" g_stop="62441" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E204856" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61946" e_stop="62441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTAC</genome_strand>
        <mrna_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205725" ref_strand="+" ref_description="SGN-E205725 [cLEC-21-J11]">
      <seq>aatggtactgtttgagtccaacattcttgctgtcatgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggtagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61646" stop="62601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61946" g_stop="62301" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E205725" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61946" e_stop="62301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATG</genome_strand>
        <mrna_strand>AATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGTAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300695" ref_strand="+" ref_description="SGN-E300695 [cLEW-8-E21]">
      <seq>catgtctgaagtcttgtcagcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61679" stop="62438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61979" g_stop="62138" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E300695" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61979" e_stop="62138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCT</genome_strand>
        <mrna_strand>CATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403848" ref_strand="+" ref_description="SGN-E403848 [PPC-11-L24]">
      <seq>atcagcgattttcgctgaagtgatgaatggaaagcccgaattcacagactatttgacacacaagttgaagcatcaccctggtcagattgaggcagctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatacgtgctgcaactaagatgatcgagagggagatcaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaagccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctccgagcttgtccacgactatttacaaacaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61695" stop="62749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61994" g_stop="62450" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E403848" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61994" e_stop="62450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTA-TTAC-AACAATGGG</genome_strand>
        <mrna_strand>ATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCCGAATTCACAGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCAGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATACGTGCTGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAAGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCCGAGCTTGTCCACGACTATTTACAAACAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690618" ref_strand="+" ref_description="SGN-E690618 [LH_Ea03P16]">
      <seq>catgcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacgagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctacatgaaatggatcctcttcaaaaaccgaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcatccgtgcagcaactaagatgatcgagagggagatcaactcagtgaacgacaatccattgatcgacgtttcaagaaacaaggccttacatggtggcaatttccaaggaacccctattggtgtgtccatggataatacaagattggcccttgcatctatcgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaatcaagatgtgaattccttaggcttaatctcagcaaggaagaccgcggaggctgtagacatcttgaagctaatgtcatcaacctatctggtggcgctttgccaggctatcgacttgaggcatttggaggagaatttaaagaatgctgtgaagaacactgtaagccatgtagccaaaaagactctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61696" stop="63084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61996" g_stop="62784" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E690618" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61996" e_stop="62784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-GCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAA</genome_strand>
        <mrna_strand>CATGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACGAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCGAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAATTTCCAAGGAACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATCGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAATCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAGACCGCGGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTGGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAATTTAAAGAATGCTGTGAAGAACACTGTAAGCCATGTAGCCAAAAAGACTCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280687" ref_strand="+" ref_description="SGN-E280687 [cLEL-6-I24](-)">
      <seq>caccaataggggtaccttggaagtttccaccgtgtaaggccttgtttcttgaaacatcgatcaatgggttgtcgttcactgagttaatctctctctcaatcatcttagttgctgcacggatgacttcaatttgaggtccaagccactgtggagatgttcgaagagcataacgatcttgctttggtttttgaagaggatccatttcatggagcttctgagctgccttgacataagagcttccatccaaaatgtgttccataatagcagcagcctcaatcggggcagggtgatgcttcaacttgtgtgtcaaatagtcagtgaattcaggctttccgttcatcacttcagcgaaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62655" stop="61696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62355" g_stop="61999" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E280687" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62355" e_stop="61999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAAATCG</genome_strand>
        <mrna_strand>CACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCGGGGCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558686" ref_strand="+" ref_description="SGN-E558686 [18065]">
      <seq>atgaatggaaagcccgaattcactgactatttgacacaccaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcaaattgaagtcatccgtgcagcaactaaaatgattgagagggagattaactcagtgaacgacaacccattgatcgacgtttcaagaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaaaggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctctgcaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61716" stop="62935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62016" g_stop="62635" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E558686" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62016" e_stop="62635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACGGAAAGCCTGAATTCACTGACTATTTGACACA-CAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAA</genome_strand>
        <mrna_strand>ATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACCAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAAATGATTGAGAGGGAGATTAACTCAGTGAACGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAAGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCTGCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207172" ref_strand="+" ref_description="SGN-E207172 [cLEC-30-G18]">
      <seq>ctgaattcactgactatttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61729" stop="62747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62029" g_stop="62447" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E207172" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62029" e_stop="62447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</genome_strand>
        <mrna_strand>CTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302638" ref_strand="+" ref_description="SGN-E302638 [cLEX-1-M15]">
      <seq>tttgacacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcacaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtacacatcttgaagctaatgtcatcaacctatctcgtggcgctatgccaagctatcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61745" stop="63008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62045" g_stop="62708" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E302638" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62045" e_stop="62708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGAC</genome_strand>
        <mrna_strand>TTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCACAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTACACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTATGCCAAGCTATCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303723" ref_strand="+" ref_description="SGN-E303723 [cLEX-4-A15]">
      <seq>tgacacacatgttgaagcatcaccctggccagatagaagctgctgctattatggaacacattttggatggaagctcttatgtcaaggcaggtcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagcggcttgcacctcaaattgaagtcatccgtgcagcaactaacatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcacaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacagccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61747" stop="62944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62047" g_stop="62644" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E303723" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62047" e_stop="62644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGA</genome_strand>
        <mrna_strand>TGACACACATGTTGAAGCATCACCCTGGCCAGATAGAAGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGGTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGCGGCTTGCACCTCAAATTGAAGTCATCCGTGCAGCAACTAACATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCACAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAGCCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698861" ref_strand="+" ref_description="SGN-E698861 [FA07DC09]">
      <seq>acacacaagttgaagcatcaccctggccagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcaaaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61749" stop="63028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62049" g_stop="62728" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E698861" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62049" e_stop="62728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAA</genome_strand>
        <mrna_strand>ACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAAAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454129" ref_strand="-" ref_description="SGN-E454129 [cSTS-22-A2]">
      <seq>ttccgagcagtaagaagccattgcaatttcagctcccttgagtccatagtccaagcttggattccttcctgctgtgagattagatggcagcccattgttgtaatagtcgttgacaagttccgaaaattgggcaaacatcaatttcccaattgatgcaagggccaatcttgtattatccatggagacaccaataggggtaccttggaagttgccaccatgtaaggccttgtttcttgaaacgtcgatcaatgggttgtcattcatcacttcagcaaaaatcgccgataaaacttcagacatgacagcaagaatgttggaatcaaacaggaccattgatgccataccagaaccaactgctgtaccattcacaagtgcaagtccttctttaggctgcaactcgaaaaatccaccactaacaccagcgacgcggaacgcttcctcagcattaagtttctcaccatttggtttttgaagaggatccatttcatggagcttctgagctgccttgacataagagctgccatccaaaatgtgttccataatagcagcagcctcaatctgaccagggtgatgcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="68494" stop="61757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68194" g_stop="67937" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67936" i_stop="67676" i_length="261">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67675" g_stop="67474" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="460" r_length="202" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67473" i_stop="62177" i_length="5297">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62176" g_stop="62057" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="580" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E454129" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454129" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68194" e_stop="67937"/>
          <exon e_start="67675" e_stop="67474"/>
          <exon e_start="62176" e_stop="62057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGAGCAGTAAGAAGCCATCGCGATTTCAGCTCCCTTGAAACCATAATCCAAGCTTGGATTCCTTCCTGCTGAGAGATTAGATGGCAATCCATTGTTGTAATAGTCGTTGACAAGCTCCGATAATTGGGCAAACATCAATTTCCCTATTGATGCAAGGGCTAATCTTGTATTATCCATGGAGACACCAATAGGGGTTCCTTGGAAGTTTCCACCATGCAACGCCTTGTTTCTTGAAACATCGATCAATGGATTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTACGCGGATGACTTCAATTTGAGGGCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCATTCATCACTTCAGCGAAAATCGCTGATAAAACTTCAGACATGACAACAAGAATGTTGGACTCAAACAGTACCATTGATGCCATACCAGAACCAACTGCAGTACCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCCACTAGTAACACCAGCCACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCATTAGGTCCAACAGCCTTGGAGTTAGGCCTGCCAGTGAGCAAACCAGCAATGTATGACAACGGGACAAGATCACCCGATGCAGTGATCGTCCCACGAAGGGGCAAACACGGGGTAATGTTGCTGTTGATCAACTTAGTAATTGCTTCCAAAATTTCAAATCTAATGCCAGAGTAGCCTTGAAGCAGAGTATTGATCCTAACAAGCATAGCTGCCCTTGTTGCTGAATGTGGCAAAGTATGAGATGATTCTGTTCCATTCCCCAACACTCCAGCATTCAAGAACCTGAAAAAATCAATGTCATCAAGATTAGATTTCGAACTAAATTCATCCGAAACTCCTTCTGGAAAAATCACATTATAAATGTGAGTCGATAAGCTATATATACGAAAAATATAAAAATTCTTTACGTTGTGAGTGTATATATAACGGGGAAAAAGTAGTTTACCTAATAAGGTCTTTTTGAAGAGCACTACCATTTGTTGTTCTTCTATGAGACGTGTCACCAAATCCAGTAGTCACACCATAACTATCTGTACCTTTGCTCATACTATCCATTACCCAATCACTACTAGCTTTCACACCAGCCCTTGAGCTTTCAGAAAGTTCTACTTTAACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAATTGTCAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATCTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACAATAATTGATTTCTTGCATAAATCCATGGCTACAACTTTTCCATTAGCATGTCCATTTGGTACAATTGATGCCATTAGATCAAGAAAATGGCTAGATTTGTAATGGAGAAATTTTAATTAGGAGAAAATGATGTTGTGAACTTATAATTTTTGTTGTTGTTTTGGTGGTGAGTATAAACAGAGAGTAACAAATGATGGTTAGGTAAAAAAAAAAAGATATGTGAGGGGTGAGTTGGTAAAAAAATAATGGTCATAGGAAGATTAATAGAATTAAGGATAATAGAATTTAATAATTGAATTTTGTCTAAAAGAGGCAAATTTTGTTTATATTGATCAATATTATTAACTATAATATGTTTTTATTAAATTCTGATTTTTCTTTGAATGAGGCAAATTTTATTGATATTGGTCAACGTTATTAAGTGTAATACATTTTTATTAAATTCTAGATTTTGTCTTAAAGAGCAAATTTTATTTATATTGGTTAATATTATTAAGTATAATATATTTTTACTAAATATTTTGTCTGAATGAGGCAAATTTCATTTATATTGGTCAATATTATTAAGTGTAATATATTTTTACTAAGTTTTAAATTTTGTCTGAATGAGGCAAATTTCATTTATATTGGTCAATATTATTAAATATAATATACTTTTATTAAATTCTGAATTTTATTTGAAAGAGGCAAATTTTATTTATGTTGGTCAATATTATTAAGTATAATATATTTTTATTAAATTCTGAATTTTGTTTGAATGAGGAAAATTTTATTTATATTGGTCAATATTATTAAGTATAATATATTTTTATTAAATTCCAGATTTTATCTGAAGAGGCAAATTTTATTTATATTGGTCAATACTTAATATCTGAAGAGGCAAATTTTATTTATATTGGTCAATACTATTAAGTATAATGTATTTTTATTAAATTTTGAATTTTGTATGAATGAGGAAATTTTTATTTATATTGGTCAATATTATTAAGTACAATGTATTTTTATTAAATTCTGAATTGTTTTGAATGAGCCAAATTTTATTTATATTGGTCAATATTATTAAGTATAATGTATTTTTATTAAATTTTGAATTGTTTTTGAATGAGCCAAATTTTATTTATATTGGTTTAAGTATAATATATATTCTATTAAATTCTAGAATTTTTTTTTAAAAAAGACAAATTTTATTTATATTTGTCAATATTATTAAGTATAACATATTTTTATTAAATTTTGAGTTTTGCCTGAAAGATACAAATTTATTTATGTTTGGTCAATATTATTAAGTATAATACATTTTTATTAAATTTTTGAATTTATCTGGAAGGAAACAAATTTTATTTATATTGGTCAATATTATTAAGTATAATATATTTCTATTAAATTCTGAATTTTGTTTGTGTCGAGCCCCAAAAAAGGGAAGAGTAACTGACACTTAAATAATCTATCTAATCGAGTTAGCCAGTGAAACATACTAGTTAACCAAACAGTAAGACAGAGATCAGCCAACACAACATCTGAAATGGGAAGCCTGGACCATGAAGGTATGACCTATATGACAATTACTCATACAAACAATGATAGACAAGTCAAAAAAACAAAGATGTACTAGCTAGCCGACAAGGCCGCAACTGAAGACAAATCTATTTACATATATATACGTACATACCAAGTCTATAGGCTAGAGATTGAAACATACAAGAAAATCCAGAATACTGTGTCCACAATACCCTCTAGGAATGACATAAGCAATGTCGGGACAAGAACTCGACTATGCTTAAATTGTACAACAAAAGTAAATATCCTCTAATAACTCAAAGATAAGATGGAGCTTACCAACTCACAGCTGAGCCCGAATTTTAGCGGTTGAGTCAATCAAAATACCTACCTGAATTTGCTCGCACGAAAAAAGCAACTTCCCCAGGCAATGGGACGTCAGTAAGAATAAAAATGTACTGATATGTAAAGCCGGAAGTGAAATCATCAATAACTAATATAAAAGGGTAAAAAGATATCATTTGAAACTGAAACTCAATTAATCTCCATGGCTAACATTTGGCCTCCTTCTATTTAAATATGCATGGTATGCTCATATAATCGTATGTCGTAAATACGTATATATAGATGCAAATGCATGACATACCCAACCAAATGCTAGCAATGGTTGTGCTTTCTAGTAGCTAACCGACAGTATATTCATCAACTTGTGTCTATCGGTATCACATACGTATAAATATAGGTAATAAGCCTCATACCTCCCGATTATACCTTAGGAGTAGAATGCATAACATGTCATGTCATGGATTCATACGCATATATATTACCGTTGTCATGTTGTCAATCTTGGCCCGTTTGTGTTCTTGATATCATAACCCCGTGTAATCACTTTCATATGTGTAACCATCTCATCGAACCTCATATGCTCTTCCAAATAAGCTAGAAAACTTGACTCGAGTTTTAAAAAGATAGCCTAACCTTGAAAATGTTCATAACAAGTTTAAGGTGATTTACTTAGTTCGTATATATACTTAGTTCTTAAATAATTTAAAAAGAATCAAGTGTTCTACTAATTTAATAATTTAAGTTATATTTGAGAGTTTTAAAGACCGTGAGTTACTTTAAAGAATTTTTAAAATAAATTTTAGTGGGGAAAAAGTGCTAACTACAAATAATAAGGGTCACCCGTAACATTTTTAAGTCACACCACCGAAGGAAGAATAAGAATTCATACATATGGACTTATAATACACGAAACCGATAAAATGACATATAGATTTCGAATACCCAATTTATTTGAACGAGTGAAATATTCAAATACTAGAATTATGTAAATAATTCAGCTATGATCCCAATGCCTTTCACATAAGGTCTTTCTAGCAAGAGAATAGCAAAATATCACATTTGACATTTAGAAATTTCCCAAATGTATTGTTAAAATAAGGCATGAAGCTTAGCCTTAACATACCTTTTCAATGAATGCTCGAATGCCCATAGTTCCCTCACAAAAGTTATTCCTTATGTCCTAAGCTTCGCAAACACAATATATACTTCTATAAACAATATTTAGAGTTCGGACTCCTGGATTAGATTCCAACAATTTCATTGGACTCAAGAGGCAATTTTAAGCCTAGGTGAGACCTATTGACCTTTGATAAGAGAGTGTGGAGGGCGAAGATTCAACTGAAACACTAGTATTCCGTAGCATTAATATCATTAATATTAAGAAATTGAACTATAATTAAGGCGATGTACTATTGTTTAAAGTTAGATTCACCAAAAATGAAGACACAAAGATATGTATTATAACCTGTAAAGTTGTAGAAATTGAATGAACATACAATTTAGAGATTATTATAATTGTAGTAATTCACTGAAAAAATAAGACTTGACAAACATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCCTCAGCGGTTTTCCTTGCTGAGATTAAGCCCAATGAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAAC</genome_strand>
        <mrna_strand>TTCCGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAGTCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAGCCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATTGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTGCCACCATGTAAGGCCTTGTTTCTTGAAACGTCGATCAATGGGTTGTC.....................................................................................................................................................................................................................................................................ATTCATCACTTCAGCAAAAATCGCCGATAAAACTTCAGACATGACAGCAAGAATGTTGGAATCAAACAGGACCATTGATGCCATACCAGAACCAACTGCTGTACCATTCACAAGTGCAAGTCCTTCTTTAGGCTGCAACTCGAAAAATCCACCACTAACACCAGCGACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGACCAGGGTGATGCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425202" ref_strand="-" ref_description="SGN-E425202 [STM-44-B6]">
      <seq>ttcccaattgatgcaggggccattcttgtattatccatggagaccccaataggggtcctttggaagttgccaccatgtaaggccttgtttcttgaaacgtcgatcaatgggttgtcattcatcacttcagcaaaaatcgccgataaaacttcagacatgacagcaagaatgttggaatcaaacaggaccattgatgccataccagaaccaactgctgtaccattcacaagtgcaagtccttctttaggctgcaactcgaaaaatccaccactaacaccagcgacgcggaacgcttcctcagcattaagtttctcaccatttggtttttgaagaggatccatttcatggagcttctgagctgccttgacataagagctgccatccaaaatgtgttccataatagcagcagcctcaatctgaccagggtgatgcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="68352" stop="61757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68052" g_stop="67937" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67936" i_stop="67676" i_length="261">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67675" g_stop="67474" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="318" r_length="202" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67473" i_stop="62177" i_length="5297">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62176" g_stop="62057" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="438" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E425202" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68052" e_stop="67937"/>
          <exon e_start="67675" e_stop="67474"/>
          <exon e_start="62176" e_stop="62057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTATTGATGCAAGGGCTAATCTTGTATTATCCATGGAGACACCAATAGGGGTTCCTTGGAAGTTTCCACCATGCAACGCCTTGTTTCTTGAAACATCGATCAATGGATTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTACGCGGATGACTTCAATTTGAGGGCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCATTCATCACTTCAGCGAAAATCGCTGATAAAACTTCAGACATGACAACAAGAATGTTGGACTCAAACAGTACCATTGATGCCATACCAGAACCAACTGCAGTACCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCCACTAGTAACACCAGCCACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCATTAGGTCCAACAGCCTTGGAGTTAGGCCTGCCAGTGAGCAAACCAGCAATGTATGACAACGGGACAAGATCACCCGATGCAGTGATCGTCCCACGAAGGGGCAAACACGGGGTAATGTTGCTGTTGATCAACTTAGTAATTGCTTCCAAAATTTCAAATCTAATGCCAGAGTAGCCTTGAAGCAGAGTATTGATCCTAACAAGCATAGCTGCCCTTGTTGCTGAATGTGGCAAAGTATGAGATGATTCTGTTCCATTCCCCAACACTCCAGCATTCAAGAACCTGAAAAAATCAATGTCATCAAGATTAGATTTCGAACTAAATTCATCCGAAACTCCTTCTGGAAAAATCACATTATAAATGTGAGTCGATAAGCTATATATACGAAAAATATAAAAATTCTTTACGTTGTGAGTGTATATATAACGGGGAAAAAGTAGTTTACCTAATAAGGTCTTTTTGAAGAGCACTACCATTTGTTGTTCTTCTATGAGACGTGTCACCAAATCCAGTAGTCACACCATAACTATCTGTACCTTTGCTCATACTATCCATTACCCAATCACTACTAGCTTTCACACCAGCCCTTGAGCTTTCAGAAAGTTCTACTTTAACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAATTGTCAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATCTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACAATAATTGATTTCTTGCATAAATCCATGGCTACAACTTTTCCATTAGCATGTCCATTTGGTACAATTGATGCCATTAGATCAAGAAAATGGCTAGATTTGTAATGGAGAAATTTTAATTAGGAGAAAATGATGTTGTGAACTTATAATTTTTGTTGTTGTTTTGGTGGTGAGTATAAACAGAGAGTAACAAATGATGGTTAGGTAAAAAAAAAAAGATATGTGAGGGGTGAGTTGGTAAAAAAATAATGGTCATAGGAAGATTAATAGAATTAAGGATAATAGAATTTAATAATTGAATTTTGTCTAAAAGAGGCAAATTTTGTTTATATTGATCAATATTATTAACTATAATATGTTTTTATTAAATTCTGATTTTTCTTTGAATGAGGCAAATTTTATTGATATTGGTCAACGTTATTAAGTGTAATACATTTTTATTAAATTCTAGATTTTGTCTTAAAGAGCAAATTTTATTTATATTGGTTAATATTATTAAGTATAATATATTTTTACTAAATATTTTGTCTGAATGAGGCAAATTTCATTTATATTGGTCAATATTATTAAGTGTAATATATTTTTACTAAGTTTTAAATTTTGTCTGAATGAGGCAAATTTCATTTATATTGGTCAATATTATTAAATATAATATACTTTTATTAAATTCTGAATTTTATTTGAAAGAGGCAAATTTTATTTATGTTGGTCAATATTATTAAGTATAATATATTTTTATTAAATTCTGAATTTTGTTTGAATGAGGAAAATTTTATTTATATTGGTCAATATTATTAAGTATAATATATTTTTATTAAATTCCAGATTTTATCTGAAGAGGCAAATTTTATTTATATTGGTCAATACTTAATATCTGAAGAGGCAAATTTTATTTATATTGGTCAATACTATTAAGTATAATGTATTTTTATTAAATTTTGAATTTTGTATGAATGAGGAAATTTTTATTTATATTGGTCAATATTATTAAGTACAATGTATTTTTATTAAATTCTGAATTGTTTTGAATGAGCCAAATTTTATTTATATTGGTCAATATTATTAAGTATAATGTATTTTTATTAAATTTTGAATTGTTTTTGAATGAGCCAAATTTTATTTATATTGGTTTAAGTATAATATATATTCTATTAAATTCTAGAATTTTTTTTTAAAAAAGACAAATTTTATTTATATTTGTCAATATTATTAAGTATAACATATTTTTATTAAATTTTGAGTTTTGCCTGAAAGATACAAATTTATTTATGTTTGGTCAATATTATTAAGTATAATACATTTTTATTAAATTTTTGAATTTATCTGGAAGGAAACAAATTTTATTTATATTGGTCAATATTATTAAGTATAATATATTTCTATTAAATTCTGAATTTTGTTTGTGTCGAGCCCCAAAAAAGGGAAGAGTAACTGACACTTAAATAATCTATCTAATCGAGTTAGCCAGTGAAACATACTAGTTAACCAAACAGTAAGACAGAGATCAGCCAACACAACATCTGAAATGGGAAGCCTGGACCATGAAGGTATGACCTATATGACAATTACTCATACAAACAATGATAGACAAGTCAAAAAAACAAAGATGTACTAGCTAGCCGACAAGGCCGCAACTGAAGACAAATCTATTTACATATATATACGTACATACCAAGTCTATAGGCTAGAGATTGAAACATACAAGAAAATCCAGAATACTGTGTCCACAATACCCTCTAGGAATGACATAAGCAATGTCGGGACAAGAACTCGACTATGCTTAAATTGTACAACAAAAGTAAATATCCTCTAATAACTCAAAGATAAGATGGAGCTTACCAACTCACAGCTGAGCCCGAATTTTAGCGGTTGAGTCAATCAAAATACCTACCTGAATTTGCTCGCACGAAAAAAGCAACTTCCCCAGGCAATGGGACGTCAGTAAGAATAAAAATGTACTGATATGTAAAGCCGGAAGTGAAATCATCAATAACTAATATAAAAGGGTAAAAAGATATCATTTGAAACTGAAACTCAATTAATCTCCATGGCTAACATTTGGCCTCCTTCTATTTAAATATGCATGGTATGCTCATATAATCGTATGTCGTAAATACGTATATATAGATGCAAATGCATGACATACCCAACCAAATGCTAGCAATGGTTGTGCTTTCTAGTAGCTAACCGACAGTATATTCATCAACTTGTGTCTATCGGTATCACATACGTATAAATATAGGTAATAAGCCTCATACCTCCCGATTATACCTTAGGAGTAGAATGCATAACATGTCATGTCATGGATTCATACGCATATATATTACCGTTGTCATGTTGTCAATCTTGGCCCGTTTGTGTTCTTGATATCATAACCCCGTGTAATCACTTTCATATGTGTAACCATCTCATCGAACCTCATATGCTCTTCCAAATAAGCTAGAAAACTTGACTCGAGTTTTAAAAAGATAGCCTAACCTTGAAAATGTTCATAACAAGTTTAAGGTGATTTACTTAGTTCGTATATATACTTAGTTCTTAAATAATTTAAAAAGAATCAAGTGTTCTACTAATTTAATAATTTAAGTTATATTTGAGAGTTTTAAAGACCGTGAGTTACTTTAAAGAATTTTTAAAATAAATTTTAGTGGGGAAAAAGTGCTAACTACAAATAATAAGGGTCACCCGTAACATTTTTAAGTCACACCACCGAAGGAAGAATAAGAATTCATACATATGGACTTATAATACACGAAACCGATAAAATGACATATAGATTTCGAATACCCAATTTATTTGAACGAGTGAAATATTCAAATACTAGAATTATGTAAATAATTCAGCTATGATCCCAATGCCTTTCACATAAGGTCTTTCTAGCAAGAGAATAGCAAAATATCACATTTGACATTTAGAAATTTCCCAAATGTATTGTTAAAATAAGGCATGAAGCTTAGCCTTAACATACCTTTTCAATGAATGCTCGAATGCCCATAGTTCCCTCACAAAAGTTATTCCTTATGTCCTAAGCTTCGCAAACACAATATATACTTCTATAAACAATATTTAGAGTTCGGACTCCTGGATTAGATTCCAACAATTTCATTGGACTCAAGAGGCAATTTTAAGCCTAGGTGAGACCTATTGACCTTTGATAAGAGAGTGTGGAGGGCGAAGATTCAACTGAAACACTAGTATTCCGTAGCATTAATATCATTAATATTAAGAAATTGAACTATAATTAAGGCGATGTACTATTGTTTAAAGTTAGATTCACCAAAAATGAAGACACAAAGATATGTATTATAACCTGTAAAGTTGTAGAAATTGAATGAACATACAATTTAGAGATTATTATAATTGTAGTAATTCACTGAAAAAATAAGACTTGACAAACATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCCTCAGCGGTTTTCCTTGCTGAGATTAAGCCCAATGAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCAATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAAC</genome_strand>
        <mrna_strand>TTCCCAATTGATGCAGGGGCCATTCTTGTATTATCCATGGAGACCCCAATAGGGGTCCTTTGGAAGTTGCCACCATGTAAGGCCTTGTTTCTTGAAACGTCGATCAATGGGTTGTC.....................................................................................................................................................................................................................................................................ATTCATCACTTCAGCAAAAATCGCCGATAAAACTTCAGACATGACAGCAAGAATGTTGGAATCAAACAGGACCATTGATGCCATACCAGAACCAACTGCTGTACCATTCACAAGTGCAAGTCCTTCTTTAGGCTGCAACTCGAAAAATCCACCACTAACACCAGCGACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGACCAGGGTGATGCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214120" ref_strand="+" ref_description="SGN-E214120 [cLEC-80-B14]">
      <seq>cagattgaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcnagaacacagtgagccaagtagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61776" stop="63069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62076" g_stop="62769" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E214120" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62076" e_stop="62769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTA</genome_strand>
        <mrna_strand>CAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCNAGAACACAGTGAGCCAAGTAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265134" ref_strand="+" ref_description="SGN-E265134 [cLEI-2-M13]">
      <seq>gaggctgctgctattatggaacacattttggatggaagctcttatgtcaaggcagcttacaagctggcgtgaaatggatcctcttcgaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaatagaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctaattgggaaattgatgtttgcccaatcttcggaacttggcaacgactattacaacaatgggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61782" stop="62754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62082" g_stop="62454" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E265134" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62082" e_stop="62454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCT-CCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCT-ATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGC</genome_strand>
        <mrna_strand>GAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTTACAAGCTGGCGTGAAATGGATCCTCTTCGAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATAGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTAATTGGGAAATTGATGTTTGCCCAATCTTCGGAACTTGGCAACGACTATTACAACAATGGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207888" ref_strand="+" ref_description="SGN-E207888 [cLEC-34-G2]">
      <seq>tattatggaacacattttggatggaagctcttatgtgaaggtagctcacaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggacctcacattgaagtcattcgtgctgcaactaagatgatcgagagggagattaactcagtgaacgacaatccattgatcgatgtttcaagaaacaaggccttacatggtggcaacttccaaggaacccctattggtgtctccatggataatacatgattggcccttgcatcaattggtaaattgatgtttgcccaattctcagagcttgtcaacgactattacaacaacgggttgtcatctaatctgacagcaggaaggaatccaagcttggactatggtttcaagggcgctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccatgtctaaagtgctgagcaacacaaccaagatgtgagttccttgggcttaatttcagccaggaaaacagctgaggctattgatatcttgaagataatgtcatcaacctatctcgtggctctttgccaagctattgacttacgacatttggaggaaaacttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61793" stop="63033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62093" g_stop="62734" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E207888" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62093" e_stop="62734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAG</genome_strand>
        <mrna_strand>TATTATGGAACACATTTTGGATGGAAGCTCTTATGTGAAGGTAGCTCACAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGACCTCACATTGAAGTCATTCGTGCTGCAACTAAGATGATCGAGAGGGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACATGATTGGCCCTTGCATCAATTGGTAAATTGATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTATTACAACAACGGGTTGTCATCTAATCTGACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGCGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCTAAAGTGCTGAGCAACACAACCAAGATGTGAGTTCCTTGGGCTTAATTTCAGCCAGGAAAACAGCTGAGGCTATTGATATCTTGAAGATAATGTCATCAACCTATCTCGTGGCTCTTTGCCAAGCTATTGACTTACGACATTTGGAGGAAAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316202" ref_strand="+" ref_description="SGN-E316202 [cTOA-23-A12]">
      <seq>acattttggatggaagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61804" stop="62886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62104" g_stop="62586" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E316202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62104" e_stop="62586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTG</genome_strand>
        <mrna_strand>ACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566407" ref_strand="+" ref_description="SGN-E566407 [4846]">
      <seq>gcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccggtgcagcaactaagatgattgagcgggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttggcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattcacaacaatgggctgccatctaatctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61816" stop="62767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62116" g_stop="62467" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E566407" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62116" e_stop="62467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCC-GTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTT-GCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATT-ACAACAATGGGTTGCCATCTAATCTCAC</genome_strand>
        <mrna_strand>GCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGGTGCAGCAACTAAGATGATTGAGCGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTCACAACAATGGGCTGCCATCTAATCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304522" ref_strand="+" ref_description="SGN-E304522 [cLEX-11-M17]">
      <seq>tcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61821" stop="63009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62121" g_stop="62709" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62121" e_stop="62709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACT</genome_strand>
        <mrna_strand>TCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268405" ref_strand="+" ref_description="SGN-E268405 [cLEI-13-F15]">
      <seq>cttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61822" stop="62925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62625" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E268405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCT</genome_strand>
        <mrna_strand>CTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206578" ref_strand="+" ref_description="SGN-E206578 [cLEC-31-M21]">
      <seq>cttatatgaaggtagctcagaagctccatgaaatggatcctcttaaaaaaccaaagaaagatcgttatgctctccgaacatctacacaatggcttggaccttaaattgaagtcattcgcgctgtaactaatatgatcgagagggagattaactcagtgaacgacaatccattgatcggtgtttcaagaaacaaggccttacatggtggcaactttcaaggtacccctatcggtgtctccatggataatacaagattggcccttgcatcaattggtaaatagatgtttgcccaattcttagagcttgtcaacgactattacaacaacgggttgccatataatctgacagtaggaagtaatccaagcttggactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61822" stop="62796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="62496" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E206578" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="62496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATG</genome_strand>
        <mrna_strand>CTTATATGAAGGTAGCTCAGAAGCTCCATGAAATGGATCCTCTTAAAAAACCAAAGAAAGATCGTTATGCTCTCCGAACATCTACACAATGGCTTGGACCTTAAATTGAAGTCATTCGCGCTGTAACTAATATGATCGAGAGGGAGATTAACTCAGTGAACGACAATCCATTGATCGGTGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTTCAAGGTACCCCTATCGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGTAAATAGATGTTTGCCCAATTCTTAGAGCTTGTCAACGACTATTACAACAACGGGTTGCCATATAATCTGACAGTAGGAAGTAATCCAAGCTTGGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484955" ref_strand="+" ref_description="SGN-E484955 [cSTE-16-A15]">
      <seq>cagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgatcgagagggagattaactcagtgaacgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctattgacttaaggcatttggaggaaaacttgaagaatgctgtcaagaacacagtgagccaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61839" stop="63067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62139" g_stop="62767" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E484955" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62139" e_stop="62767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGC</genome_strand>
        <mrna_strand>CAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAGATTAACTCAGTGAACGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAATGCTGTCAAGAACACAGTGAGCCAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214424" ref_strand="+" ref_description="SGN-E214424 [cLEC-77-B5]">
      <seq>agaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctcttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61840" stop="62984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62140" g_stop="62684" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E214424" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62140" e_stop="62684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTC</genome_strand>
        <mrna_strand>AGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467450" ref_strand="+" ref_description="SGN-E467450 [cSTB-49-C7]">
      <seq>gaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattgagagggagattaactcagtgaatgacaacccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61841" stop="63126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62141" g_stop="62826" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E467450" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62141" e_stop="62826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGA</genome_strand>
        <mrna_strand>GAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGGGAGATTAACTCAGTGAATGACAACCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467009" ref_strand="+" ref_description="SGN-E467009 [cPRO-26-D22]">
      <seq>caagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgaccaaccatgttcagagtgccgagcaacacaaccaagatgtgaactccttaggcttaatctcagcaaggaaaacagctgaggctgtcgacatcttaaagctaatgtcatcaacctatctcgtggcactttgccaagctatagacttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61878" stop="63207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62178" g_stop="62907" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E467009" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62178" e_stop="62907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGC</genome_strand>
        <mrna_strand>CAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACCAACCATGTTCAGAGTGCCGAGCAACACAACCAAGATGTGAACTCCTTAGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTCGACATCTTAAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAAGCTATAGACTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209819" ref_strand="+" ref_description="SGN-E209819 [cLEC-52-P14]">
      <seq>cgttatgctcttcaatttttttcacagtggcttggacctcaaattgaggtcattcgtgcagcaactaagatgaccgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagatgggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcaaaacttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61902" stop="62847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62184" g_stop="62547" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E209819" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62184" e_stop="62547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAAT</genome_strand>
        <mrna_strand>CGTTATGCTCTTCAATTTTTTTCACAGTGGCTTGGACCTCAAATTGAGGTCATTCGTGCAGCAACTAAGATGACCGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATGGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAAAACTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463119" ref_strand="+" ref_description="SGN-E463119 [cPRO-13-L19]">
      <seq>gttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgaccaaccatgttcagagtgccgagcaacacaaccaagatgtgaactccttaggcttaatctcagcaaggaaaacagctgaggctgtcgacatcttaaagctaatgtcatcaacctatctcgtggcactttgccaagctatagacttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgcagaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61885" stop="63215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62185" g_stop="62915" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E463119" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62185" e_stop="62915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTG</genome_strand>
        <mrna_strand>GTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACCAACCATGTTCAGAGTGCCGAGCAACACAACCAAGATGTGAACTCCTTAGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTCGACATCTTAAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAAGCTATAGACTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGCAGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266877" ref_strand="+" ref_description="SGN-E266877 [cLEI-7-A21]">
      <seq>ttcgaacatctccacagtggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61894" stop="62927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62194" g_stop="62627" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E266877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62194" e_stop="62627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCA</genome_strand>
        <mrna_strand>TTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200633" ref_strand="+" ref_description="SGN-E200633 [cLEC-9-E22]">
      <seq>ggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggaagctgaaattgcaatgngcttcttacttgcgtcagaacttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61912" stop="62847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62212" g_stop="62547" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E200633" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62212" e_stop="62547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGG-AGCTGAAATTGCAATG-GCTTCTTAC-TGC-TCAGAACTTCAAT</genome_strand>
        <mrna_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAAGCTGAAATTGCAATGNGCTTCTTACTTGCGTCAGAACTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204184" ref_strand="+" ref_description="SGN-E204184 [cLEC-13-C20]">
      <seq>ggcttggacctcaaattgaagtcatccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61912" stop="62702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62212" g_stop="62402" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E204184" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62212" e_stop="62402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTG</genome_strand>
        <mrna_strand>GGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739672" ref_strand="+" ref_description="SGN-E739672 [LC18BF06]">
      <seq>catccgtgcagcaactaagatgattgagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61934" stop="63367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62234" g_stop="63067" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E739672" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62234" e_stop="63067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGG</genome_strand>
        <mrna_strand>CATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326848" ref_strand="+" ref_description="SGN-E326848 [cTOC-25-O3]">
      <seq>agagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61959" stop="63241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62258" g_stop="62941" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E326848" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62258" e_stop="62941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAAT</genome_strand>
        <mrna_strand>AGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325555" ref_strand="+" ref_description="SGN-E325555 [cTOC-15-G10]">
      <seq>agagagagagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacnatgggtgctaatggtgaacttcatcctgcaagattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61959" stop="63121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62258" g_stop="62821" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E325555" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62258" e_stop="62821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTG</genome_strand>
        <mrna_strand>AGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACNATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215107" ref_strand="+" ref_description="SGN-E215107 [cLEC-78-N11]">
      <seq>gagattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaagaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61965" stop="63112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62265" g_stop="62812" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E215107" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62265" e_stop="62812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGC</genome_strand>
        <mrna_strand>GAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAAGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208908" ref_strand="+" ref_description="SGN-E208908 [cLEC-51-F14]">
      <seq>gattaactcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61967" stop="63095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62267" g_stop="62795" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E208908" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62267" e_stop="62795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAAT</genome_strand>
        <mrna_strand>GATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456122" ref_strand="+" ref_description="SGN-E456122 [cSTS-28-J7]">
      <seq>tgcagtgaaccgcaatccattgatcgatgtttcaagaaaccaggccttacaccggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttgcctatgctgatgacccatgcagctgcacctaccctttgatgcagaagctgagacaagtccttggttgatcatgcaatgaagaatgggtgaaagtgagacgaatgtgaacagctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61975" stop="63280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62273" g_stop="62980" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E456122" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62273" e_stop="62980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACAC-GGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTT-GTTGATCATGCAATGAAGAAT-GGTGAAAGTGAGAAGAATGTGAACAGCTCAAT</genome_strand>
        <mrna_strand>TGCAGTGAACCGCAATCCATTGATCGATGTTTCAAGAAACCAGGCCTTACACCGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTGCCTATGCTGATGACCCATGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGGTTGATCATGCAATGAAGAATGGGTGAAAGTGAGACGAATGTGAACAGCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407650" ref_strand="+" ref_description="SGN-E407650 [PPI-8-E17]">
      <seq>ctcagtgaacgacaaatccattgattgatgtttcaagaaacaaggccttacaccggtggcaacttccaaggcaccccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattttcagagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaatcgcgatggcttcttactgctctgagcttcaattcttggctaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaaccaccgtagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgtgaaaaggaattgctaccnagttgtggaaagggattaccttgtttgcctatggctgatgacccctgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61973" stop="63138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62273" g_stop="62889" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E407650" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62273" e_stop="62889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTGAACGAC-AACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACA-CGGTGGAAACTTCCAAGGTA-CCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAA-CACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCT-TCGAGTTGTGGACAGGGAATA-CGTGTTTGCCTAT-GCTGATGATCCCTGCAGCT</genome_strand>
        <mrna_strand>CTCAGTGAACGACAAATCCATTGATTGATGTTTCAAGAAACAAGGCCTTACACCGGTGGCAACTTCCAAGGCACCCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTTTCAGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATCGCGATGGCTTCTTACTGCTCTGAGCTTCAATTCTTGGCTAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACCACCGT-AGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGTGAAAAGGAATTGCTACCNAGTTGTGGAAAGGGATTACCTTGTTTGCCTATGGCTGATGACCCCTGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301663" ref_strand="+" ref_description="SGN-E301663 [cLEW-23-B11]">
      <seq>gaattcggcacgaggcagtgaacgacaacccattgatcgatgtttcaagaaacaaggccttacacggtggaaacttccaaggtacccctattggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61975" stop="63059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62278" g_stop="62759" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="500" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E301663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62278" e_stop="62759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGC</genome_strand>
        <mrna_strand>TGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478056" ref_strand="+" ref_description="SGN-E478056 [cSTD-2-N12]">
      <seq>cgacaatccattgatcgacgtttcaagaaacaaggccttacatggtggcaacttccaaggcacccctattggtgtctccatggataatacacgattggcccttgcatcaattggtaaattgatgtttgcccaattctcagagcttgtcaacgactattacaacaacgggttgccatctaatctgacagcaggaaggaatccaagcttggactatggtttcaagggcgctgaaattgcgatggcttcttattgctcggaacttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttgggattaatctcagccaggaaaacagccgaggctgttgatatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatagacttgcggcatttggaggagaacttgaagagtgctgtcaagaacacagttagccaagtagctaagagaaccttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgcttcgagtcgtggacagggaatacttgtttgcctatgcagatgacccctgcagctccaactaccctttgatgcagaagctgagacaagtccttgttgatcaagcaatgaagaatggtgaaagtgagaagcatttcaacagctcaatcttncaaaagattggnagcttcgaggatgaattaattgctgtgttgcctaaagaagttgagagtgtaagagctgttgttgaaagtggcaacccttcattcctaacaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61982" stop="63391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62282" g_stop="63091" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E478056" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62282" e_stop="63091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATT-GTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGAT</genome_strand>
        <mrna_strand>CGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACACGATTGGCCCTTGCATCAATTGGTAAATTGATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTATTACAACAACGGGTTGCCATCTAATCTGACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGCGCTGAAATTGCGATGGCTTCTTATTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTGGGATTAATCTCAGCCAGGAAAACAGCCGAGGCTGTTGATATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATAGACTTGCGGCATTTGGAGGAGAACTTGAAGAGTGCTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACCTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTTCGAGTCGTGGACAGGGAATACTTGTTTGCCTATGCAGATGACCCCTGCAGCTCCAACTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCAAGCAATGAAGAATGGTGAAAGTGAGAAGCATTTCAACAGCTCAATCTTNCAAAAGATTGGNAGC-TTCGAGGATGAATTAATTGCTGTGTTGCCTAAAGAAGTTGAGAGTGTAAGAGCTGTTGTTGAAAGTGGCAACCCTTC-ATTCCTAACAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708898" ref_strand="+" ref_description="SGN-E708898 [FA42AC12]">
      <seq>cgattgattgacgtttcaagaaacaaggccttacatggtggcaacttccaaggaacccctatcggtgtgtccatggataatacaagattggcccttgcatctattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgtagatcatatccattgtacaggttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61991" stop="63427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62289" g_stop="63128" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E708898" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62289" e_stop="63128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTG</genome_strand>
        <mrna_strand>CGATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460149" ref_strand="+" ref_description="SGN-E460149 [cPRO-30-G15]">
      <seq>cgacgtttcaagaaacaaggccttacatggtggcaacttccaaggcacccctattggtgtctccatggataatacacgattggcccttgcatcaattggtaaattgatgtttgcccaattctcagagcttgtcaacgactattacaacaacgggttgccatctaatctgacagcaggaaggaatccaagcttggactatggtttcaagggcgctgaaattgcgatggcttcttattgctcggaacttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttgggattaatctcagccaggaaaacagccgaggctgttgatatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatagacttgcggcatttggaggagaacttgaagagtgctgtcaagaacacagttagccaagtagctaagagaaccttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgcttcgagtcgtggacagggaatacttgtttgcctatgcagatgacccctgcagctccaactaccctttgatgcagaagctgagacnagtccttgttgatncagcaatgaagaatggntgaagtgagaagcatttcaacagctcaatcttcccaaagattggagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61997" stop="63302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62297" g_stop="63002" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E460149" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62297" e_stop="63002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTC</genome_strand>
        <mrna_strand>CGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACACGATTGGCCCTTGCATCAATTGGTAAATTGATGTTTGCCCAATTCTCAGAGCTTGTCAACGACTATTACAACAACGGGTTGCCATCTAATCTGACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGCGCTGAAATTGCGATGGCTTCTTATTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTGGGATTAATCTCAGCCAGGAAAACAGCCGAGGCTGTTGATATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATAGACTTGCGGCATTTGGAGGAGAACTTGAAGAGTGCTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACCTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTTCGAGTCGTGGACAGGGAATACTTGTTTGCCTATGCAGATGACCCCTGCAGCTCCAACTACCCTTTGATGCAGAAGCTGAGACNAGTCCTTGTTGATNCAGCAATGAAGAATGGNTGAAGTGAGAAGCATTTCAACAGCTCAATCTTCCCAAAGATTGGAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592056" ref_strand="+" ref_description="SGN-E592056 [45781]">
      <seq>gtttcaagaaacaaggccttacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatctttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaaagtggcaaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62001" stop="63373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62301" g_stop="63074" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E592056" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62301" e_stop="63074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC-TTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTG-AAAGTGGCAACCCT</genome_strand>
        <mrna_strand>GTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAAGTGGCAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482388" ref_strand="+" ref_description="SGN-E482388 [cSTD-22-C21]">
      <seq>gaaacaaggccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcaccaaggaaaactgctgaggctgtggacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62008" stop="62958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62308" g_stop="62658" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E482388" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62308" e_stop="62658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCT</genome_strand>
        <mrna_strand>GAAACAAGGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCACCAAGGAAAACTGCTGAGGCTGTGGACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590136" ref_strand="+" ref_description="SGN-E590136 [43726]">
      <seq>ccctattggtgtctccatggataatacaagattggccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggagcttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctggcagctgcacctaccctttgatgcagaagctgagacaagtccttggttgatcatgcaatgaagaatggtgaaagtgaggacgaatgtgaacagctcaatcttccaaaagattgtagtctttcgaggaagaattaaatgttgtgttgcctaaaagaagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62045" stop="63340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62345" g_stop="63040" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E590136" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62345" e_stop="63040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCT-GCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTT-GTTGATCATGCAATGAAGAATGGTGAAAGTGA-GAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAG-CTTTCGAGGACGAATTGAAGGCCGCGTTGCCT-AAAGAAGTTGA</genome_strand>
        <mrna_strand>CCCTATTGGTGTCTCCATGGATAATACAAGATTGG-CCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAGCTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGGTTGATCATGCAATGAAGAATGGTGAAAGTGAGGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGTCTTTCGAGGAAGAATTAAATGTTGTGTTGCCTAAAAGAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450663" ref_strand="+" ref_description="SGN-E450663 [cSTS-10-E11]">
      <seq>attggcccttgcatcaattgggaaattgatgtttgcccaattttcggaacttgtcaacgactattacaacaatgggctgccatctaatctcacagcaggaaggaatccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62075" stop="63288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62375" g_stop="62988" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E450663" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62375" e_stop="62988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAA</genome_strand>
        <mrna_strand>ATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGCTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316424" ref_strand="+" ref_description="SGN-E316424 [cTOA-25-N9]">
      <seq>tgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62152" stop="63384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62452" g_stop="63084" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E316424" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62452" e_stop="63084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTA</genome_strand>
        <mrna_strand>TGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283674" ref_strand="+" ref_description="SGN-E283674 [cLES-1-H12]">
      <seq>aggaaggaatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62171" stop="63197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62471" g_stop="62897" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E283674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62471" e_stop="62897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTAC</genome_strand>
        <mrna_strand>AGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209052" ref_strand="+" ref_description="SGN-E209052 [cLEC-38-D14]">
      <seq>aatccaagcttggattatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62178" stop="63183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62478" g_stop="62883" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E209052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62478" e_stop="62883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCT</genome_strand>
        <mrna_strand>AATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453939" ref_strand="+" ref_description="SGN-E453939 [cSTS-21-L9]">
      <seq>ccaagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacggtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaataatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggcaatgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaagttggtgagacaagaacttggatcagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62181" stop="63451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62481" g_stop="63151" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E453939" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62481" e_stop="63151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACT</genome_strand>
        <mrna_strand>CCAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACGGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAATAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCAATGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAAGTTGGTGAGACAAGAACTTGGATCAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474681" ref_strand="+" ref_description="SGN-E474681 [cSTB-37-I20]">
      <seq>caagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgccttgccaagctattgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagtcgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62182" stop="63314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62482" g_stop="63014" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E474681" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62482" e_stop="63014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTG</genome_strand>
        <mrna_strand>CAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCCTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGTCGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475484" ref_strand="+" ref_description="SGN-E475484 [cSTB-40-M3]">
      <seq>caagcttggactatggactcaagggagctgaaattgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctattgacttaaggcatttggaggaaaacttgaggaatgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62182" stop="63190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62482" g_stop="62890" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E475484" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62482" e_stop="62890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTC</genome_strand>
        <mrna_strand>CAAGCTTGGACTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307128" ref_strand="+" ref_description="SGN-E307128 [cLEY-15-P8]">
      <seq>cttggattatggactcaagggagctgaaattgcaatggctgcttactgctcagaacgtcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcanaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62186" stop="63277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62486" g_stop="62977" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E307128" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62486" e_stop="62977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTC</genome_strand>
        <mrna_strand>CTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTGCTTACTGCTCAGAACGTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCANAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201694" ref_strand="+" ref_description="SGN-E201694 [cLEC-11-L22]">
      <seq>attatggactcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgttcgcctatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62191" stop="63174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62491" g_stop="62874" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E201694" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62491" e_stop="62874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTG</genome_strand>
        <mrna_strand>ATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTCGCCTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467074" ref_strand="+" ref_description="SGN-E467074 [cPRO-26-P20]">
      <seq>tggactcaagggagctgaagttgcaatggcttcttactgctcggaacttcaatttttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcaccaaggaaaaccgctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctattgacttaatgcatttggaggaaaacttgaggaatgctgtcaagaacacagtgagccaaatagctaatagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcaagaaggaattgcttctagtcgtggacagggaatacgtgtttgcctatgctgatgatccctgcagttcaacctaccctttgatgcacaagctgagacaaggccttggtgatcatgcaatgaagaatggtgaaagtgagtcgaatgtgaacagctcaatcttccaaaagattgtaactttcgaggaccaattgaatgctgtgttgcctaaagaagttgagagtgcaagaactatgcttgaaagtggcagccctgtacttcctatcaggataacagaatgctgatcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62195" stop="63411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62495" g_stop="63111" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E467074" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62495" e_stop="63111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATC</genome_strand>
        <mrna_strand>TGGACTCAAGGGAGCTGAAGTTGCAATGGCTTCTTACTGCTCGGAACTTCAATTTTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCACCAAGGAAAACCGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATTGACTTAATGCATTTGGAGGAAAACTTGAGGAATGCTGTCAAGAACACAGTGAGCCAAATAGCTAATAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCAAGAAGGAATTGCTTCTAGTCGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGTTCAACCTACCCTTTGATGCACAAGCTGAGACAAGGCCTTGGTGATCATGCAATGAAGAATGGTGAAAGTGAGTCGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAACTTTCGAGGACCAATTGAATGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAACTATGCTTGAAAGTGGCAGCCCTGTACTTCCTATCAGGATAACAGAATGCTGATCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403676" ref_strand="+" ref_description="SGN-E403676 [PPC-11-K12]">
      <seq>ctcaagggagctgaaattgcaatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacaccgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaaaaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggctgtgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaaccctgtaattcctaacaggataacagaatgcagatcatatccattatacaggtttgtaaggaaagaagttggaacagaactattgacaggtgaaaaagttcgatcgcccggtgaggagattgacnaggtattcacagcattttgcaatggacnaatcattgatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62199" stop="63538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62499" g_stop="63238" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E403676" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62499" e_stop="63238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATT</genome_strand>
        <mrna_strand>CTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACCGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAAAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTGTAATTCCTAACAGGATAACAGAATGCAGATCATATCCATTATACAGGTTTGTAAGGAAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGACNAGGTATTCACAGCATTTTGCAATGGACNAATCATTGATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319164" ref_strand="+" ref_description="SGN-E319164 [cTOB-16-G24]">
      <seq>tcaagggagctgaaattgcaatggcttcttactgctcagaacttcaatacctggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaacatgtgaattcattgggcttaatctcatcacggaaaaccgctgaagctgtacacatcttgaagctaatgtcatcaacctatgtcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaagagtgctgtcaagaacacagtgagccaagtagctaacagaactttgacaatgggtgctaatggcgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcaaaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62200" stop="63282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62500" g_stop="62982" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E319164" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62500" e_stop="62982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</genome_strand>
        <mrna_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATACCTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAACATGTGAATTCATTGGGCTTAATCTCATCACGGAAAACCGCTGAAGCTGTACACATCTTGAAGCTAATGTCATCAACCTATGTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAAGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAACAGAACTTTGACAATGGGTGCTAATGGCGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAAAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207605" ref_strand="+" ref_description="SGN-E207605 [cLEC-32-C18]">
      <seq>tcaagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62200" stop="63282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62500" g_stop="62982" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E207605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62500" e_stop="62982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</genome_strand>
        <mrna_strand>TCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307792" ref_strand="+" ref_description="SGN-E307792 [cLEY-16-N22]">
      <seq>caagggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtgcaaagtgctgatcaacacaaccaacatgtgaatacattgggcttaatctcaacaaggaaaaccgctgaggctgttgacatattgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacattgagccaagtatctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttctagttgtggacaaggaatacatgtttgcctatgctgatgatccctgcagctgcacctaccctttgatgcacaagctgaaacaagttcttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62201" stop="63282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62501" g_stop="62982" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E307792" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62501" e_stop="62982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</genome_strand>
        <mrna_strand>CAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTGCAAAGTGCTGATCAACACAACCAACATGTGAATACATTGGGCTTAATCTCAACAAGGAAAACCGCTGAGGCTGTTGACATATTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACATTGAGCCAAGTATCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCTAGTTGTGGACAAGGAATACATGTTTGCCTATGCTGATGATCCCTGCAGCTGCACCTACCCTTTGATGCACAAGCTGAAACAAGTTCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301998" ref_strand="+" ref_description="SGN-E301998 [cLEX-3-A6]">
      <seq>ggagctgaaattgcaatggcttcttactgctcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaagctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62205" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62505" g_stop="62752" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E301998" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62505" e_stop="62752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACAC</genome_strand>
        <mrna_strand>GGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAAGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409530" ref_strand="+" ref_description="SGN-E409530 [PPI-14-G16]">
      <seq>ggcttcttactgctcggagcttcaattcttggcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattccttaggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggaagaattaaatgttgtgttgcctaaagaagttgagagtgcaagagctgctcttgagagtggaaaccccttcattcctaacaggatcacagaatgcagatcatatccattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62222" stop="63417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62522" g_stop="63117" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E409530" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62522" e_stop="63117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGT</genome_strand>
        <mrna_strand>GGCTTCTTACTGCTCGGAGCTTCAATTCTTGGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGAAGAATTAAATGTTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGCTCTTGAGAGTGGAAACCCCTTCATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277402" ref_strand="+" ref_description="SGN-E277402 [cLER-3-O8]">
      <seq>ttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattcgttgggcttaatctcagcaaggaaaacagctgaggctgttgacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttgaggcatttggaggagaatttgaagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62225" stop="63281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62525" g_stop="62981" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E277402" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62525" e_stop="62981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</genome_strand>
        <mrna_strand>TTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304765" ref_strand="+" ref_description="SGN-E304765 [cLEX-11-N4]">
      <seq>tcagaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62235" stop="63281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62535" g_stop="62981" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62535" e_stop="62981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</genome_strand>
        <mrna_strand>TCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290404" ref_strand="+" ref_description="SGN-E290404 [cLES-20-D15]">
      <seq>agaacttcaattccttgcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62237" stop="63188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62537" g_stop="62888" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E290404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62537" e_stop="62888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGC</genome_strand>
        <mrna_strand>AGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265996" ref_strand="+" ref_description="SGN-E265996 [cLEI-6-B2]">
      <seq>attccttgcaaatccagtgactaaccatgtccaaagtgctgatcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62246" stop="63184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62546" g_stop="62884" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E265996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62546" e_stop="62884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTG</genome_strand>
        <mrna_strand>ATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGATCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299406" ref_strand="+" ref_description="SGN-E299406 [cLET-43-I4]">
      <seq>gcaaatccagtgactaaccatgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62253" stop="63409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62553" g_stop="63109" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E299406" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62553" e_stop="63109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</genome_strand>
        <mrna_strand>GCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213330" ref_strand="+" ref_description="SGN-E213330 [cLEC-71-H24]">
      <seq>atgtccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgntcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62272" stop="63594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62572" g_stop="63289" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E213330" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62572" e_stop="63289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGAT</genome_strand>
        <mrna_strand>ATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGNTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401073" ref_strand="+" ref_description="SGN-E401073 [PPC-3-C1]">
      <seq>gttcagagtgccgagcaacacaaccaagatgtgaactccttaggcttaatctcagcaaggaaaacagctgaggctgtcgacatcttaaagctaatgtcatcaacctatctcgtggcactttgccaagctatagacttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgcagaagctgagacaggtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatatcaacagctcaatcttccaaaagattggagctttcgaggacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62274" stop="63311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62574" g_stop="63011" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E401073" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62574" e_stop="63011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAA</genome_strand>
        <mrna_strand>GTTCAGAGTGCCGAGCAACACAACCAAGATGTGAACTCCTTAGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTCGACATCTTAAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAAGCTATAGACTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGCAGAAGCTGAGACAGGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATATCAACAGCTCAATCTTCCAAAAGATTGGAGCTTTCGAGGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308017" ref_strand="+" ref_description="SGN-E308017 [cLEY-14-C24]">
      <seq>tccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62275" stop="63445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62575" g_stop="63145" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E308017" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62575" e_stop="63145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATC</genome_strand>
        <mrna_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304857" ref_strand="+" ref_description="SGN-E304857 [cLEX-10-C17]">
      <seq>tccaaagtgctgagcaacacaaccaagatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62275" stop="63409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62575" g_stop="63109" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304857" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62575" e_stop="63109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</genome_strand>
        <mrna_strand>TCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303368" ref_strand="+" ref_description="SGN-E303368 [cLEX-2-B23]">
      <seq>agatgtgaattcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcataagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62300" stop="63283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62600" g_stop="62983" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E303368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62600" e_stop="62983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTT</genome_strand>
        <mrna_strand>AGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCATAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203911" ref_strand="+" ref_description="SGN-E203911 [cLEC-17-N21]">
      <seq>ttcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62309" stop="63457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62609" g_stop="63157" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E203911" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62609" e_stop="63157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGAC</genome_strand>
        <mrna_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281116" ref_strand="+" ref_description="SGN-E281116 [cLER-7-K24]">
      <seq>ttcattgggcttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagatgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62309" stop="63219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62609" g_stop="62919" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E281116" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62609" e_stop="62919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGAC</genome_strand>
        <mrna_strand>TTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGATGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235342" ref_strand="+" ref_description="SGN-E235342 [cLED-11-D5]">
      <seq>ttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62319" stop="63536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62619" g_stop="63236" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E235342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62619" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCA</genome_strand>
        <mrna_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242924" ref_strand="+" ref_description="SGN-E242924 [cLED-31-B19]">
      <seq>ttaatctcagcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttccaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62319" stop="63409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62619" g_stop="63109" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E242924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62619" e_stop="63109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</genome_strand>
        <mrna_strand>TTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCCAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304395" ref_strand="+" ref_description="SGN-E304395 [cLEX-12-A11]">
      <seq>agcaaggaaaaccgctgaggctgtagacatcttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62327" stop="63534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62627" g_stop="63234" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E304395" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62627" e_stop="63234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</genome_strand>
        <mrna_strand>AGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378130" ref_strand="+" ref_description="SGN-E378130 [TUS-21-L18]">
      <seq>caaggaaaaccgctgaggctgtagtacatcttgaagctaatgtacatcaacctatctagtggcgcttagccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgagtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaaactgagacaagtccttgttgatcatgcaatgaacaatggtgaaagtgacaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62329" stop="63480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62629" g_stop="63180" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E378130" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62629" e_stop="63180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAAACCGCTGAGGCTGTAG-ACATCTTGAAGCTAATGT-CATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCG</genome_strand>
        <mrna_strand>CAAGGAAAACCGCTGAGGCTGTAGTACATCTTGAAGCTAATGTACATCAACCTATCTAGTGGCGCTTAGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGAGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAACTGAGACAAGTCCTTGTTGATCATGCAATGAACAATGGTGAAAGTGACAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468476" ref_strand="+" ref_description="SGN-E468476 [cSTB-4-L10]">
      <seq>ggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttgcctatgctgatgacccatgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaggaagaattaaatgttgtgttgcctaaagaagttgagagtgcaagagctatgcttgagagtggaaacccttcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62345" stop="63438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62645" g_stop="63138" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E468476" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62645" e_stop="63138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAAC</genome_strand>
        <mrna_strand>GGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTGCCTATGCTGATGACCCATGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGAAGAATTAAATGTTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTATGCTTGAGAGTGGAAACCCTTCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201367" ref_strand="+" ref_description="SGN-E201367 [cLEC-4-M22]">
      <seq>gatctgcattctgtgatcctgttaggaattgcagggttgccactttcaacaacagctcttgcactctcaacttctttaggcaacacggcctttaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcagggatcatcagcataggcaaacacgtattccctgtccacaactcgaagcaattccttctcgcagaatcttgcaggatgaagttcaccattagcacccattgtcaaagttctcttagctacttggctcactgtgttcttgacagcactcctcaagttttcctccaaatgccttaagtcgatagcttggcaaagcgccacgagataggttgatgacattagcttcaagatgtctacagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="63406" stop="62345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63106" g_stop="62645" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E201367" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63106" e_stop="62645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCC</genome_strand>
        <mrna_strand>GATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286786" ref_strand="+" ref_description="SGN-E286786 [cLES-14-P18]">
      <seq>ttgaagctaatgtcatcaacctatctcgtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62358" stop="63563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62658" g_stop="63263" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E286786" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62658" e_stop="63263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</genome_strand>
        <mrna_strand>TTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575586" ref_strand="+" ref_description="SGN-E575586 [35234]">
      <seq>gctaatgtcatcacctatctcgtggcactttgccaagcaatggactttgaggcatttggaggagaacttgaagagtgttgtcaagaacacagttagccaagtagctaagagaactttgacaataggtgctattggtgaacttcatccagcaagattctgcgagaaggaattgcttcgagtcgtagacagggaatacttgtttacctatgctgatgacccctgcagctccacctatcctttgatgcagaagctgagacaggtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatatcaacagctcaatcttccaaaagattggagctttcgaggacgaattaaatgctgtgttgcctaaagaagttgagagtgcaagagctcttcttgaaagtggcaacccttcgattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggaacagaactgttgacaggtgaaaaagttcgatcgccgggcgaggagattgaaaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgtagatgtttgtccagtgttaatttttcaaaattcttttttttaccttttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62363" stop="63612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62663" g_stop="63312" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E575586" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62663" e_stop="63312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTT-AAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCA</genome_strand>
        <mrna_strand>GCTAATGTCATC-ACCTATCTCGTGGCACTTTGCCAAGCAATGGACTTTGAGGCATTTGGAGGAGAACTTGAAGAGTGTTGTCAAGAACACAGTTAGCCAAGTAGCTAAGAGAACTTTGACAATAGGTGCTATTGGTGAACTTCATCCAGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTCGTAGACAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTATCCTTTGATGCAGAAGCTGAGACAGGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATATCAACAGCTCAATCTTCCAAAAGATTGGAGCTTTCGAGGACGAATTAAATGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTCTTCTTGAAAGTGGCAACCCTTCGATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGAACAGAACTGTTGACAGGTGAAAAAGTTCGATCGCCGGGCGAGGAGATTGAAAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTG-TAGATGTTTGTCCAGTGTTAATTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346721" ref_strand="+" ref_description="SGN-E346721 [cTOF-28-P11]">
      <seq>gtggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtaccaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatnccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgcttgccagaaaaaagaccagttgtgaatgcttgtctagtgctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62385" stop="63597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62685" g_stop="63289" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E346721" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62685" e_stop="63289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTA-CAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGAT-CCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGAT</genome_strand>
        <mrna_strand>GTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACCAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATNCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242042" ref_strand="+" ref_description="SGN-E242042 [cLED-27-L1]">
      <seq>ggcgctttgccaagctattgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaacaatgtgaacagctcaatcttccaaaagattgtagctttctaggacgaattgaaggccgcgttgcctaaaaaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62387" stop="63549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62687" g_stop="63249" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E242042" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62687" e_stop="63249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTC</genome_strand>
        <mrna_strand>GGCGCTTTGCCAAGCTATTGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAACAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCTAGGACGAATTGAAGGCCGCGTTGCCTAAAAAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243675" ref_strand="+" ref_description="SGN-E243675 [cLED-34-J16]">
      <seq>ggcgctttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62387" stop="63424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62687" g_stop="63124" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E243675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62687" e_stop="63124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTT</genome_strand>
        <mrna_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404679" ref_strand="+" ref_description="SGN-E404679 [PPC-14-L22]">
      <seq>agcgctttgccaggctatcgacttgaagcatttggaggagaacttgaagaatgctgtcaagaacaccgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttacctatgctgatgacccctgcagctgcacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaaaaatggtgaaagtgagacgaatgtgaacagctcaatcttccaaaagattgtagctttcgaagacgaattgaaggctgtgttgcctaaagaagttgagagtgcaagagctgttcttgaaagtggcaaccctgtaattcctaacaggatcacagaatgcagatcatatccattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62388" stop="63418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62687" g_stop="63118" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E404679" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62687" e_stop="63118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTA</genome_strand>
        <mrna_strand>AGCGCTTTGCCAGGCTATCGACTTGAAGCATTTGGAGGAGAACTTGAAGAATGCTGTCAAGAACACCGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTACCTATGCTGATGACCCCTGCAGCTGCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAAAATGGTGAAAGTGAGACGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAAGACGAATTGAAGGCTGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTCTTGAAAGTGGCAACCCTGTAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214126" ref_strand="+" ref_description="SGN-E214126 [cLEC-80-D18]">
      <seq>agacacaaagatatgtattataacctgtaaagttgtagaaattgaatgaacatacaatttagagattattataattgtagtaattcactgaaaaaataagacttgacaaacatctagcagattggaagaggagcaccattccagctcttgagacactccaacaatggatcaatgatctgtccattgcacattgctgtgaacaccttgtcaatctcctcaccgggtgatcgaactttttcacctgtcaaaagttctgatccaagttcttgtctcaccaacctgtacaatggatatgatctgcattctgtgatcctgttaggaattgcagggttgccactttcaacaacagctcttgcactctcaacttctttaggcaacgcggccttcaattcgtcctcgaaagctacaatcttttggaagattgagctgttcacattcttctcactttcaccattcttcattgcatgatcaacaaggacttgtctcagcttctgcatcaaagggtaggtggagctgcagggatcatcagcataggcaaacacgtattccctgtccacaactcgaagcaattccttctcgcagaatcttgcaggatgaagttcaccattagcacccattgtcaaagttctcttagctacttggctcactgtgttcttgacagcactcctcaagttttccntccaatgccttaagtcgatagctgggcaaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="63700" stop="62388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63400" g_stop="62688" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E214126" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63400" e_stop="62688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACAAAGATATGTATTATAACCTGTAAAGTTGTAGAAATTGAATGAACATACAATTTAGAGATTATTATAATTGTAGTAATTCACTGAAAAAATAAGACTTGACAAACATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGC</genome_strand>
        <mrna_strand>AGACACAAAGATATGTATTATAACCTGTAAAGTTGTAGAAATTGAATGAACATACAATTTAGAGATTATTATAATTGTAGTAATTCACTGAAAAAATAAGACTTGACAAACATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCNTCCAATGCCTTAAGTCGATAGCTGGGCAAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240427" ref_strand="+" ref_description="SGN-E240427 [cLED-25-F18]">
      <seq>tttgccaagctatcgacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatctttcaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62392" stop="63441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62692" g_stop="63141" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E240427" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62692" e_stop="63141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTG</genome_strand>
        <mrna_strand>TTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTTCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739118" ref_strand="+" ref_description="SGN-E739118 [LC16AG07]">
      <seq>ctctacttaaggcatttggaggaaaacttgaggagtgctgtcaagaacacagtgagccaagtagctaagagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62404" stop="63304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62703" g_stop="63004" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E739118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62703" e_stop="63004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGA</genome_strand>
        <mrna_strand>CTCTACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235452" ref_strand="+" ref_description="SGN-E235452 [cLED-11-I7]">
      <seq>aagaatgctgtgaaaaacactgtaagccaagtagccaaaaagactctggcaatgggtgctaatggcgaacttcatccagcaagattctgcgaaaaggaattgctacaagtggtggaaagggaatatttgtttacctatgctgatgacccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggaaaccctgcaattcctaacaggatcacagaatgtagatcatatccattgtacaggttggttagacaagaagttggaacagaactattgacaggtgaaaaagttcgatcgcccggtgaggagattgataaggtattcacagcattttgcaatggacaaatcattgatccattgttggagtgtctcaaaagctggaatggtgctcctattccaatctgctaaatgtttgtcaactgttactttcaaattcttttttttaccttacagtaatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62433" stop="63608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62733" g_stop="63298" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E235452" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62733" e_stop="63298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAA</genome_strand>
        <mrna_strand>AAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336129" ref_strand="+" ref_description="SGN-E336129 [cTOE-12-G1]">
      <seq>gtgctgccaagaacacagtgagccaagttgctaatagaactttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtctgcctatgctgatgatccctgcacctccacctaccctttgatgcataacctgagacaagaccttgttgatcatgcaatgaagaatggtgaaagtgaaaagagatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgctgttgaaagtggcaaccctgccattcctaacaggatcacagaatgcacatcatatccattgtgcacgttggcgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcaccccgtgaggagatcgacacggtgttcacatcaatgtgcaatggacagatcatggatccattgttggagtgtctcaagagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62437" stop="63563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62737" g_stop="63263" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E336129" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62737" e_stop="63263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGA-ATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</genome_strand>
        <mrna_strand>GTGCTGCCAAGAACACAGTGAGCCAAGTTGCTAATAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTCTGCCTATGCTGATGATCCCTGCACCTCCACCTACCCTTTGATGCATAACCTGAGACAAGACCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAAAAGAGATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGCTGTTGAAAGTGGCAACCCTGCCATTCCTAACAGGATCACAGAATGCACATCATATCCATTGTGCACGTTGGCGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCCGTGAGGAGATCGACACGGTGTTCACATCAATGTGCAATGGACAGATCATGGATCCATTGTTGGAGTGTCTCAAGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279008" ref_strand="+" ref_description="SGN-E279008 [cLER-2-H8]">
      <seq>tttgacaatgggtgctaatggtgaacttcatcctgcaagattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62477" stop="63534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62777" g_stop="63234" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E279008" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62777" e_stop="63234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</genome_strand>
        <mrna_strand>TTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242040" ref_strand="+" ref_description="SGN-E242040 [cLED-27-J21]">
      <seq>taatggggaactatgtcctgcatgattctgcgagaaggaattgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62507" stop="63533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62792" g_stop="63233" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E242040" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62792" e_stop="63233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGAT</genome_strand>
        <mrna_strand>TAATGGGGAACTATGTCCTGCATGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308905" ref_strand="+" ref_description="SGN-E308905 [cLEY-23-D12]">
      <seq>agggaattgcttcgagttgtggacagggaatacgtgtttgcctagggtgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagatcgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62528" stop="63560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62826" g_stop="63260" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E308905" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62826" e_stop="63260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGG</genome_strand>
        <mrna_strand>AGGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTAGGGTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241007" ref_strand="+" ref_description="SGN-E241007 [cLED-24-F20]">
      <seq>ttgcttcgagttgtggacagggaatacgtgtttgcctatgctgatgatccctgcagctccacctaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattaaaggccgtgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62532" stop="63479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62832" g_stop="63179" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E241007" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62832" e_stop="63179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCC</genome_strand>
        <mrna_strand>TTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238020" ref_strand="+" ref_description="SGN-E238020 [cLED-18-F10]">
      <seq>tgctgatgatccctgcagctccacgtaccctttgatgcagaagctgagacaagtccttgttgatcatgcaatgaagaatggtgaaagtgagaagaatgtgaacagctcaatcttccaaaagattgtagctttcgaggacgaattgaaggccgcgttgcctaaagaagttgagagtgcaagagctgttgttgaaagtggcaaccctgcaattcctaacaggatcacagaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgtttgtcaagtcttattttttcagtgaattactacaattataataatctctaaattgtatgttcattcaatttctacaactttacaggttataatacatatctttgtgtcttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62570" stop="63703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62870" g_stop="63402" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E238020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62870" e_stop="63402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTATGTTCATTCAATTTCTACAACTTTACAGGTTATAATACATATCTTTGTGTCTTC</genome_strand>
        <mrna_strand>TGCTGATGATCCCTGCAGCTCCACGTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTATGTTCATTCAATTTCTACAACTTTACAGGTTATAATACATATCTTTGTGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200349" ref_strand="+" ref_description="SGN-E200349 [cLEC-1-M11](-)">
      <seq>gaatgcagatcatatccattgtacaggttggtgagacaagaacttggatcagaacttttgacaggtgaaaaagttcgatcacccggtgaggagattgacaaggtgttcacagcaatgtgcaatggacagatcattgatccattgttggagtgtctcaagagctggaatggtgctcctcttccaatctgctagatgtttgtcaagtcttattttttcagtgaattactacaattaaaataatctctaaattgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="62796" stop="63649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63096" g_stop="63349" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E200349" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63096" e_stop="63349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTAT</genome_strand>
        <mrna_strand>GAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTAAAATAATCTCTAAATTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481627" ref_strand="+" ref_description="SGN-E481627 [cSTD-18-J12]">
      <seq>atcaaagttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59955" stop="67612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65314" g_stop="65351" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.684"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65352" i_stop="66537" i_length="1186">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66538" g_stop="67028" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="529" r_length="491" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67312" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="650" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E481627" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65314" e_stop="65351"/>
          <exon e_start="66538" e_stop="67028"/>
          <exon e_start="67192" e_stop="67312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATACTTAATAATATTGACCAATATAAATAAAATTTGTTTCCTTCCAGATAAATTCAAAAATTTAATAAAAATGTATTATACTTAATAATATTGACCAAACATAAATAAATTTGTATCTTTCAGGCAAAACTCAAAATTTAATAAAAATATGTTATACTTAATAATATTGACAAATATAAATAAAATTTGTCTTTTTTAAAAAAAAATTCTAGAATTTAATAGAATATATATTATACTTAAACCAATATAAATAAAATTTGGCTCATTCAAAAACAATTCAAAATTTAATAAAAATACATTATACTTAATAATATTGACCAATATAAATAAAATTTGGCTCATTCAAAACAATTCAGAATTTAATAAAAATACATTGTACTTAATAATATTGACCAATATAAATAAAAATTTCCTCATTCATACAAAATTCAAAATTTAATAAAAATACATTATACTTAATAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATATTAAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATAAAATCTGGAATTTAATAAAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTTCCTCATTCAAACAAAATTCAGAATTTAATAAAAATATATTATACTTAATAATATTGACCAACATAAATAAAATTTGCCTCTTTCAAATAAAATTCAGAATTTAATAAAAGTATATTATATTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATTTAAAACTTAGTAAAAATATATTACACTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATATTTAGTAAAAATATATTATACTTAATAATATTAACCAATATAAATAAAATTTGCTCTTTAAGACAAAATCTAGAATTTAATAAAAATGTATTACACTTAATAACGTTGACCAATATCAATAAAATTTGCCTCATTCAAAGAAAAATCAGAATTTAATAAAAACATATTATAGTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATT</genome_strand>
        <mrna_strand>ATCAAAGTTCACAACATTTTTTTATATAAATAAAATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478793" ref_strand="+" ref_description="SGN-E478793 [cSTD-7-G7]">
      <seq>caaagttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaccaaaaatggtgggtgcccttcaaaaggaacttattangttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59959" stop="67694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65316" g_stop="65351" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65352" i_stop="66537" i_length="1186">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66538" g_stop="67028" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="527" r_length="491" r_score="0.908"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.82"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67394" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="730" r_length="203" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E478793" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65316" e_stop="65351"/>
          <exon e_start="66538" e_stop="67028"/>
          <exon e_start="67192" e_stop="67394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTAATAATATTGACCAATATAAATAAAATTTGTTTCCTTCCAGATAAATTCAAAAATTTAATAAAAATGTATTATACTTAATAATATTGACCAAACATAAATAAATTTGTATCTTTCAGGCAAAACTCAAAATTTAATAAAAATATGTTATACTTAATAATATTGACAAATATAAATAAAATTTGTCTTTTTTAAAAAAAAATTCTAGAATTTAATAGAATATATATTATACTTAAACCAATATAAATAAAATTTGGCTCATTCAAAAACAATTCAAAATTTAATAAAAATACATTATACTTAATAATATTGACCAATATAAATAAAATTTGGCTCATTCAAAACAATTCAGAATTTAATAAAAATACATTGTACTTAATAATATTGACCAATATAAATAAAAATTTCCTCATTCATACAAAATTCAAAATTTAATAAAAATACATTATACTTAATAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATATTAAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATAAAATCTGGAATTTAATAAAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTTCCTCATTCAAACAAAATTCAGAATTTAATAAAAATATATTATACTTAATAATATTGACCAACATAAATAAAATTTGCCTCTTTCAAATAAAATTCAGAATTTAATAAAAGTATATTATATTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATTTAAAACTTAGTAAAAATATATTACACTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATATTTAGTAAAAATATATTATACTTAATAATATTAACCAATATAAATAAAATTTGCTCTTTAAGACAAAATCTAGAATTTAATAAAAATGTATTACACTTAATAACGTTGACCAATATCAATAAAATTTGCCTCATTCAAAGAAAAATCAGAATTTAATAAAAACATATTATAGTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGT-AGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTG</genome_strand>
        <mrna_strand>CAAAGTTCACAACATTTTTTTATATAAATAAAATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGACCAA-AAATGGTGGGTGCCCTTCAAAAGGAACTTATTAN...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481761" ref_strand="+" ref_description="SGN-E481761 [cSTD-19-M8]">
      <seq>caaagttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaccaaaaatggtggtgcccttcaaaaggacttattangttcttgaatgctggagtttttggcaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59959" stop="67522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65316" g_stop="65351" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65352" i_stop="66537" i_length="1186">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66538" g_stop="67028" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="525" r_length="489" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67222" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="556" r_length="31" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E481761" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65316" e_stop="65351"/>
          <exon e_start="66538" e_stop="67028"/>
          <exon e_start="67192" e_stop="67222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTAATAATATTGACCAATATAAATAAAATTTGTTTCCTTCCAGATAAATTCAAAAATTTAATAAAAATGTATTATACTTAATAATATTGACCAAACATAAATAAATTTGTATCTTTCAGGCAAAACTCAAAATTTAATAAAAATATGTTATACTTAATAATATTGACAAATATAAATAAAATTTGTCTTTTTTAAAAAAAAATTCTAGAATTTAATAGAATATATATTATACTTAAACCAATATAAATAAAATTTGGCTCATTCAAAAACAATTCAAAATTTAATAAAAATACATTATACTTAATAATATTGACCAATATAAATAAAATTTGGCTCATTCAAAACAATTCAGAATTTAATAAAAATACATTGTACTTAATAATATTGACCAATATAAATAAAAATTTCCTCATTCATACAAAATTCAAAATTTAATAAAAATACATTATACTTAATAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATATTAAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATAAAATCTGGAATTTAATAAAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTTCCTCATTCAAACAAAATTCAGAATTTAATAAAAATATATTATACTTAATAATATTGACCAACATAAATAAAATTTGCCTCTTTCAAATAAAATTCAGAATTTAATAAAAGTATATTATATTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATTTAAAACTTAGTAAAAATATATTACACTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATATTTAGTAAAAATATATTATACTTAATAATATTAACCAATATAAATAAAATTTGCTCTTTAAGACAAAATCTAGAATTTAATAAAAATGTATTACACTTAATAACGTTGACCAATATCAATAAAATTTGCCTCATTCAAAGAAAAATCAGAATTTAATAAAAACATATTATAGTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGA</genome_strand>
        <mrna_strand>CAAAGTTCACAACATTTTTTTATATAAATAAAATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGACCAA-AAATGGTGGTGCCCTTCAAAAGGA-CTTATTAN...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423760" ref_strand="+" ref_description="SGN-E423760 [STM-42-D17]">
      <seq>gttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattangttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59961" stop="67573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65320" g_stop="65351" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.688"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65352" i_stop="66537" i_length="1186">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66538" g_stop="67028" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="523" r_length="491" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67273" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="605" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E423760" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65320" e_stop="65351"/>
          <exon e_start="66538" e_stop="67028"/>
          <exon e_start="67192" e_stop="67273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATAATATTGACCAATATAAATAAAATTTGTTTCCTTCCAGATAAATTCAAAAATTTAATAAAAATGTATTATACTTAATAATATTGACCAAACATAAATAAATTTGTATCTTTCAGGCAAAACTCAAAATTTAATAAAAATATGTTATACTTAATAATATTGACAAATATAAATAAAATTTGTCTTTTTTAAAAAAAAATTCTAGAATTTAATAGAATATATATTATACTTAAACCAATATAAATAAAATTTGGCTCATTCAAAAACAATTCAAAATTTAATAAAAATACATTATACTTAATAATATTGACCAATATAAATAAAATTTGGCTCATTCAAAACAATTCAGAATTTAATAAAAATACATTGTACTTAATAATATTGACCAATATAAATAAAAATTTCCTCATTCATACAAAATTCAAAATTTAATAAAAATACATTATACTTAATAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATATTAAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATAAAATCTGGAATTTAATAAAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTTCCTCATTCAAACAAAATTCAGAATTTAATAAAAATATATTATACTTAATAATATTGACCAACATAAATAAAATTTGCCTCTTTCAAATAAAATTCAGAATTTAATAAAAGTATATTATATTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATTTAAAACTTAGTAAAAATATATTACACTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATATTTAGTAAAAATATATTATACTTAATAATATTAACCAATATAAATAAAATTTGCTCTTTAAGACAAAATCTAGAATTTAATAAAAATGTATTACACTTAATAACGTTGACCAATATCAATAAAATTTGCCTCATTCAAAGAAAAATCAGAATTTAATAAAAACATATTATAGTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTT</genome_strand>
        <mrna_strand>GTTCACAACATTTTTTTATATAAATAAAATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAN...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468634" ref_strand="+" ref_description="SGN-E468634 [cSTB-5-M4]">
      <seq>gttcacaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59961" stop="67542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65320" g_stop="65351" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.688"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65352" i_stop="66537" i_length="1186">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66538" g_stop="67028" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="523" r_length="491" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67242" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="574" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E468634" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65320" e_stop="65351"/>
          <exon e_start="66538" e_stop="67028"/>
          <exon e_start="67192" e_stop="67242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATAATATTGACCAATATAAATAAAATTTGTTTCCTTCCAGATAAATTCAAAAATTTAATAAAAATGTATTATACTTAATAATATTGACCAAACATAAATAAATTTGTATCTTTCAGGCAAAACTCAAAATTTAATAAAAATATGTTATACTTAATAATATTGACAAATATAAATAAAATTTGTCTTTTTTAAAAAAAAATTCTAGAATTTAATAGAATATATATTATACTTAAACCAATATAAATAAAATTTGGCTCATTCAAAAACAATTCAAAATTTAATAAAAATACATTATACTTAATAATATTGACCAATATAAATAAAATTTGGCTCATTCAAAACAATTCAGAATTTAATAAAAATACATTGTACTTAATAATATTGACCAATATAAATAAAAATTTCCTCATTCATACAAAATTCAAAATTTAATAAAAATACATTATACTTAATAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATATTAAGTATTGACCAATATAAATAAAATTTGCCTCTTCAGATAAAATCTGGAATTTAATAAAAATATATTATACTTAATAATATTGACCAATATAAATAAAATTTTCCTCATTCAAACAAAATTCAGAATTTAATAAAAATATATTATACTTAATAATATTGACCAACATAAATAAAATTTGCCTCTTTCAAATAAAATTCAGAATTTAATAAAAGTATATTATATTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATTTAAAACTTAGTAAAAATATATTACACTTAATAATATTGACCAATATAAATGAAATTTGCCTCATTCAGACAAAATATTTAGTAAAAATATATTATACTTAATAATATTAACCAATATAAATAAAATTTGCTCTTTAAGACAAAATCTAGAATTTAATAAAAATGTATTACACTTAATAACGTTGACCAATATCAATAAAATTTGCCTCATTCAAAGAAAAATCAGAATTTAATAAAAACATATTATAGTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTT</genome_strand>
        <mrna_strand>GTTCACAACATTTTTTTATATAAATAAAATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479195" ref_strand="+" ref_description="SGN-E479195 [cSTD-9-E13]">
      <seq>gttcacaacatttttttatataaataaaattcccatttttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="59961" stop="67693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66338" g_stop="66377" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66378" i_stop="66544" i_length="167">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66545" g_stop="67028" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="524" r_length="484" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67192" g_stop="67393" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="726" r_length="202" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E479195" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66338" e_stop="66377"/>
          <exon e_start="66545" e_stop="67028"/>
          <exon e_start="67192" e_stop="67393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTTTAGACAAAATTCAATTATTAAATTCTATTATCCTTAATTCTATTAATCTTCCTATGACCATTATTTTTTTACCAACTCACCCCTCACATATCTTTTTTTTTTTACCTAACCATCATTTGTTACTCTCTGTTTATACTCACCACCAAAACAACAACAAAAATTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACT</genome_strand>
        <mrna_strand>GTTCACAACATTTTTTTATATAAATAAAATTCCCATTTTT.......................................................................................................................................................................TTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559188" ref_strand="+" ref_description="SGN-E559188 [18645]">
      <seq>gttcaccaacatttttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgtaagaaatcaattaatgttgatgatccattaaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttgggaatggaacagaatcatctcacacattaccacattcagcaacaagggcagctatgcttgttaggatcacaatctgcttcaagttactctggctttagatttgaatcttggaagcattactaagttgatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66245" stop="67649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66559" g_stop="67028" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="524" r_length="470" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67192" g_stop="67350" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="679" r_length="155" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E559188" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66559" e_stop="67028"/>
          <exon e_start="67192" e_stop="67350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAA</genome_strand>
        <mrna_strand>TTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGTAAGAAATCAATTAATGTTGATGATCCATTAAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACATTACCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATC-ACAATCTGCTTCAA-GTTACTCTGGCTTTAGATTTG-AATCTTGGAAGC-ATTACTAAGTTGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584406" ref_strand="+" ref_description="SGN-E584406 [10231]">
      <seq>tttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaatatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataataaaagcaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacactttgccacattcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66245" stop="67554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66559" g_stop="67028" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="512" r_length="471" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67192" g_stop="67254" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="575" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E584406" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66559" e_stop="67028"/>
          <exon e_start="67192" e_stop="67254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTAATTAAA-ATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGC</genome_strand>
        <mrna_strand>TTCTCCTAAGTAAATATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATAAAAGCAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACTTTGCCACATTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583456" ref_strand="+" ref_description="SGN-E583456 [9277]">
      <seq>tttttatataaataaaattcccattttttctcttctccaaattctcctaagtaaaatttctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattgaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaacaagatggtggatgaactttagaaagccaattgtgaaacttgggggtcgaaactttgacagttgcacaagttgcatccattgcaaatgctgataatacaagcaatggggtcaacagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaacggtacagatagttctggtgttactactggatttggttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66245" stop="67276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66559" g_stop="66978" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="464" r_length="423" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E583456" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66559" e_stop="66978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAA-TTTAGAAAGCCAATTGTGAAACTTGGGGGT-GAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAA-AGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACG</genome_strand>
        <mrna_strand>TTCTCCTAAGTAAAATTTCTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTGAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAACAAGATGGTGGATGAACTTTAGAAAGCCAATTGTGAAACTTGGGGGTCGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAATACAAGCAATGGGGTCAACAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAACGGTACAGATAGTTCTGGTGTTACTACTGGATTTGGTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477849" ref_strand="+" ref_description="SGN-E477849 [cSTD-1-N24]">
      <seq>ctccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgcaagaaatcaattaatgttgatgatccattaaattgggaaatggctgctgaatctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaacttattaggttcttgaatgctggagtttttgggaatggaacagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaatcttggaaagcattactaagttgatcaacagcaacatcaccccgtgtttgcccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66277" stop="67722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66577" g_stop="67028" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67192" g_stop="67422" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="683" r_length="231" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E477849" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66577" e_stop="67028"/>
          <exon e_start="67192" e_stop="67422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATA</genome_strand>
        <mrna_strand>CTCCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGCAAGAAATCAATTAATGTTGATGATCCATTAAATTGGGAAATGGCTGCTGAATCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGGAATGGAACAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAAGCATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTGCCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572960" ref_strand="+" ref_description="SGN-E572960 [32195]">
      <seq>ccattacaattctagccattttcttgatctaatggcatcaattgcacaaaatggacatgttaatggagaagttgtagccatggaattatgtaagaaatcaattaatgttgatgatccattaaattgggaaatggctgctgattctttaagagggagtcatttggatgaagtgaaaaagatggtggatgaatttagaaagccaattgtgaaacttgggggtgaaactttgacagttgcacaagttgcatccattgcaaatgctgataacaaaagtaatggggtcaaagtggaactttctgaaagtgcaagggctggtgtgaaagctagtagtgattgggttatggatagtatgagtaaaggtacagatagttatggtgttactactggatttggtgcaacatctcatagaagaaccaaaaatggtggtgcccttcaaaaggaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66279" stop="67324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66579" g_stop="67024" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E572960" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66579" e_stop="67024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTA</genome_strand>
        <mrna_strand>CCATTACAATTCTAGCCATTTTCTTGATCTAATGGCATCAATTGCACAAAATGGACATGTTAATGGAGAAGTTGTAGCCATGGAATTATGTAAGAAATCAATTAATGTTGATGATCCATTAAATTGGGAAATGGCTGCTGATTCTTTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAGTTGCACAAGTTGCATCCATTGCAAATGCTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTTATGGATAGTATGAGTAAAGGTACAGATAGTTATGGTGTTACTACTGGATTTGGTGCAACATCTCATAGAAGAACCAAAAATGGTGGTGCCCTTCAAAAGGAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408753" ref_strand="+" ref_description="SGN-E408753 [PPI-12-I5]">
      <seq>aaaaagaacttattaggttcttgaatgctggagtttttggcaatggaacagaatcatctcacacattgccacattcagcaacaagggcagctatgcttgttaggatcaacactctgcttcaaggctactctggcattagatttgaaattttggaagcaatcactaagttgatcaacagcaacatcaccccgtgcttgcctctccgtggtacgatcactgcctcgggtgatcttgtacctttgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggacccaacggtgagaaacttaatgctgaggaagctttccgcgtggctggtgttactggtggatttttcgagttgcagcctaaggaaggacttgcacttgtgaatggcacagcagttggttctgctatggcatcaatagtcctgtttgagtccaacattcttgctgttatgtctgaagttttatcagcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggaagctcttatgtgaaggcagctcagaagctccccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttgggcctcagattgaagtcatccgtgctgcaactaagatgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="61230" stop="68213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67013" g_stop="67028" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67192" g_stop="67913" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="740" r_length="724" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E408753" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67013" e_stop="67028"/>
          <exon e_start="67192" e_stop="67913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGACCTTATTAGGTAAACTACTTTTTCCCCGTTATATATACACTCACAACGTAAAGAATTTTTATATTTTTCGTATATATAGCTTATCGACTCACATTTATAATGTGATTTTTCCAGAAGGAGTTTCGGATGAATTTAGTTCGAAATCTAATCTTGATGACATTGATTTTTTCAGGTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCT--CCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTG</genome_strand>
        <mrna_strand>AAAAAGAACTTATTAG...................................................................................................................................................................GTTCTTGAATGCTGGAGTTTTTGGCAATGGAACAGAATCATCTCACACATTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATCACTAAGTTGATCAACAGCAACATCACCCCGTGCTTGCCTCTCCGTGGTACGATCACTGCCTCGGGTGATCTTGTACCTTTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCCAACGGTGAGAAACTTAATGCTGAGGAAGCTTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGCTATGGCATCAATAGTCCTGTTTGAGTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTGAAGGCAGCTCAGAAGCTCCCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGGCCTCAGATTGAAGTCATCCGTGCTGCAACTAAGATGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452353" ref_strand="+" ref_description="SGN-E452353 [cSTS-16-D13]">
      <seq>acagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggatactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatccgtgcagcaactaagatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66923" stop="68213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67223" g_stop="67913" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E452353" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67223" e_stop="67913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTG</genome_strand>
        <mrna_strand>ACAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGATACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451960" ref_strand="+" ref_description="SGN-E451960 [cSTS-15-O7]">
      <seq>cagaatcatctcacactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccgtgtttacccctccgtggcacgatcactgcctcgggtgatcttgtccctctgtcctacattgctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactggtggattttttgagttgcagcctaaagaaggacttgcacttgtgaatggcacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgttatgtctgaagttttatcagcgatttttgctgaagtgatgaatggaaagcccgaattcacagactatttgacacacaagttgaagcatcaccctggtcagattgaggcagctgctattatggaacacattttggatggcagctcttatgtcaaggaagctcagaagctccatgaaatggatcctcttcaaaaccaaagcaagatcgntatgctctccgaacatcntccacatggcttggccctcaaattgaagtcatacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66924" stop="68195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67224" g_stop="67896" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E451960" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67224" e_stop="67896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATC-TCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGT</genome_strand>
        <mrna_strand>CAGAATCATCTCACACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCGTGTTTACCCCTCCGTGGCACGATCACTGCCTCGGGTGATCTTGTCCCTCTGTCCTACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTGGTGGATTTTTTGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGCACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACAGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCAGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGAAGCTCAGAAGCTCCATGAAATGGATCCTCTTC-AAAACCAAAGCAAGATCGNTATGCTCTCCGAACATCNTCCACA-TGGCTTGGCCCTCAAATTGAAGTCATACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228199" ref_strand="+" ref_description="SGN-E228199 [cLED-2-A12]">
      <seq>tactttgccacattcagcaacaagggcagctatgcttgttaggatcaatactctgcttcaaggctactctggcattagatttgaaattttggaagcaattactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgcttaggaagcgttccgcgtggctggtgttactagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="66937" stop="67827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67237" g_stop="67527" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E228199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67237" e_stop="67527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGG</genome_strand>
        <mrna_strand>TACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTTAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288716" ref_strand="+" ref_description="SGN-E288716 [cLES-8-J7]">
      <seq>tggcattagatttgaaattttggaagcttttactaagttgatcaacagcaacattaccccgtgtttgccccttcgtgggacgatcactgcatcgggtgatcttgtcccgttgtcatacattgctggtttgctcactggcaggcctaactccaaggctgttggacctaatggtgagaaacttaatgctgaggaagcgttccgcgtggctggtgttactagtggatttttcgagttgcagcctaaggaaggacttgtacttgtgaatggtactgcagttggttctggtatggcatcaatggtactgtttgagtccaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67006" stop="67924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67306" g_stop="67624" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E288716" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67306" e_stop="67624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCC-AACATT</genome_strand>
        <mrna_strand>TGGCATTAGATTTGAAATTTTGGAAGCTTTTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGTACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449378" ref_strand="+" ref_description="SGN-E449378 [cSTS-6-E10]">
      <seq>tagatttgaaatcttggaagcaattactaagttgatcaacagcaacatcaccccatgtttgcccctccgtggcacaatcactgcctcaggtgatcttgtccctctgtcctacatagctggtttgctcactggcaggcctaactccaaggctgttggaccaaatggtgagaaacttaatgctgaggaagcgttccgcgtcgctggtgttagtggtggatttttcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagcttcatgaaatggatcctcttcaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67012" stop="68126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67312" g_stop="67826" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E449378" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67312" e_stop="67826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAAC</genome_strand>
        <mrna_strand>TAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATCACCCCATGTTTGCCCCTCCGTGGCACAATCACTGCCTCAGGTGATCTTGTCCCTCTGTCCTACATAGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCAAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTCGCTGGTGTTAGTGGTGGATTTTTCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTTCATGAAATGGATCCTCTTCAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482299" ref_strand="+" ref_description="SGN-E482299 [cSTD-21-B20]">
      <seq>tcgagttgcagcctaaagaaggacttgcacttgtgaatggtacagcagttggttctggtatggcatcaatggtcctgtttgattccaacattcttgctgtcatgtctgaagttttatcggcgatttttgctgaagtgatgaatggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacagtggcttggccctcaaattgaagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67233" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67533" g_stop="67891" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E482299" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67533" e_stop="67891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATC</genome_strand>
        <mrna_strand>TCGAGTTGCAGCCTAAAGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCTGGTATGGCATCAATGGTCCTGTTTGATTCCAACATTCTTGCTGTCATGTCTGAAGTTTTATCGGCGATTTTTGCTGAAGTGATGAATGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406348" ref_strand="+" ref_description="SGN-E406348 [PPI-3-D13]">
      <seq>gcctaaggaaggacttgcacttgtgaatggtacagcagttggttccggtatggcatcaattgtcctgtatgactccaacattcttgctgttatgtctgaagttttatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaatgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67243" stop="68507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67543" g_stop="68207" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E406348" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67543" e_stop="68207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTG</genome_strand>
        <mrna_strand>GCCTAAGGAAGGACTTGCACTTGTGAATGGTACAGCAGTTGGTTCCGGTATGGCATCAATTGTCCTGTATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAATGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408901" ref_strand="+" ref_description="SGN-E408901 [PPI-12-F11]">
      <seq>atgactccaacattcttgctgttatgtctgaagttttatcagcgattttcgctgaagtgatgaacggaaagcccgaattcactgactatttgacacacaagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaggcagctcagaagctccatgaaatggatcctcttcaaaaaccaaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcattcgtgctgcaacaaagatgatcgagagggagatcaactcagtcaacgacaatccattgatcgatgtttcaagaaacaaggccatacatggtggcaacttccaaggtacccctattggtgtctccatggataatacaagattggcccttgcatcaattgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaagggagctgaaatcgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgaccaaccatgttcagagtgcccgagcacacaacaagatgtgaactccttanggcttatctcagcagggaaacagctgaggctgtcgacatcttaaagctatgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67312" stop="68628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67611" g_stop="68328" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E408901" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67611" e_stop="68328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTG-CCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATC</genome_strand>
        <mrna_strand>ATGACTCCAACATTCTTGCTGTTATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCCGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATTCGTGCTGCAACAAAGATGATCGAGAGGGAGATCAACTCAGTCAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCCATACATGGTGGCAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACCAACCATGTTCAGAGTGCCCGAGC-ACACAA-CAAGATGTGAACTCCTTANGGCTTATCTCAGC-AGGGAAACAGCTGAGGCTGTCGACATCTTAAAGCT-ATGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690618" ref_strand="+" ref_description="SGN-E690618 [LH_Ea03P16]">
      <seq>catgcgattttcgctgaagtgatgaacggaaagcctgaattcactgactatttgacacacgagttgaagcatcaccctggtcagattgaggctgctgctattatggaacacattttggatggcagctcttatgtcaaagaagctcagaagctacatgaaatggatcctcttcaaaaaccgaagcaagatcgttatgctctccgaacatctccacaatggcttggccctcagattgaagtcatccgtgcagcaactaagatgatcgagagggagatcaactcagtgaacgacaatccattgatcgacgtttcaagaaacaaggccttacatggtggcaatttccaaggaacccctattggtgtgtccatggataatacaagattggcccttgcatctatcgggaaattgatgtttgcccaattctcggagcttgtcaacgactattacaacaatggattgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattccttgcaaatccggtgactaaccacgtccaaagtgccgagcaacacaatcaagatgtgaattccttaggcttaatctcagcaaggaagaccgcggaggctgtagacatcttgaagctaatgtcatcaacctatctggtggcgctttgccaggctatcgacttgaggcatttggaggagaatttaaagaatgctgtgaagaacactgtaagccatgtagccaaaaagactctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67350" stop="68737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67650" g_stop="68438" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E690618" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67650" e_stop="68438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-GCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAGCAATGCGGTCAAGAATACAGTGAGTCAAGTAGCTAAAAGAACTTTGACAG</genome_strand>
        <mrna_strand>CATGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACGAGTTGAAGCATCACCCTGGTCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCGAAGCAAGATCGTTATGCTCTCCGAACATCTCCACAATGGCTTGGCCCTCAGATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAGATCAACTCAGTGAACGACAATCCATTGATCGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAATTTCCAAGGAACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATCGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAATCAAGATGTGAATTCCTTAGGCTTAATCTCAGCAAGGAAGACCGCGGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTGGTGGCGCTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAATTTAAAGAATGCTGTGAAGAACACTGTAAGCCATGTAGCCAAAAAGACTCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482377" ref_strand="+" ref_description="SGN-E482377 [cSTD-22-A21]">
      <seq>gaaacaacgccttacacggtggcaacttccaaggcacccctattggtgtctccatggataatacaagattggcccttgcatcaattggaaaattgatgtttgcccaattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcagcaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggagaacttgaagaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67662" stop="68694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67962" g_stop="68395" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E482377" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67962" e_stop="68395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAGCAATGCG</genome_strand>
        <mrna_strand>GAAACAACGCCTTACACGGTGGCAACTTCCAAGGCACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCAATTGGAAAATTGATGTTTGCCCAATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCAGCAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAAGAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479106" ref_strand="+" ref_description="SGN-E479106 [cSTD-8-J3]">
      <seq>aattctcggagcttgtgaacgactattacaacaatgggttgccatctaatctcacagcaggaaggaatccaagcttggactatggtttcaaaggagctgaaattgcgatggcttcttactgctcggaacttcaattcttggcaaatccagtgactaaccacgtccaaagtgccgagcaacacaaccaagatgtgaattccttgggcttaatctcaacaaggaaaactgctgaggctgtggacatcttgaagctaatgtcatcaacctatctcgtggcactttgccaggctatcgacttgaggcatttggaggacaacttgaagaatgctgtcaagaacactgtaagccaagtagccaaaaagactttgacaatgggtgctaatggtgaacttcatccagcaagattctgcgaaaaggaattgctacaagttgtggaaagggaatacttgtttgcctatgctgatgacccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="67767" stop="68839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68067" g_stop="68539" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E479106" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68067" e_stop="68539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAGCAATGCGGTCAAGAATACAGTGAGTCAAGTAGCTAAAAGAACTTTGACAGTAGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCCACAAGTTGTGGACAGGGAATACCTGTTTGCCTATGTTGATGATCCTTGC</genome_strand>
        <mrna_strand>AATTCTCGGAGCTTGTGAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCTTGGCAAATCCAGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCCTTGGGCTTAATCTCAACAAGGAAAACTGCTGAGGCTGTGGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCACTTTGCCAGGCTATCGACTTGAGGCATTTGGAGGACAACTTGAAGAATGCTGTCAAGAACACTGTAAGCCAAGTAGCCAAAAAGACTTTGACAATGGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTTGTGGAAAGGGAATACTTGTTTGCCTATGCTGATGACCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378687" ref_strand="+" ref_description="SGN-E378687 [TUS-26-F6]">
      <seq>agataaagaggagggctaaagagaaatatatagaagatgtatgtaatagtgatttcattgcctttgattatattggtattgattgtagccattgtttgttacatgtgtggaagatcaaggggttgttgctgaataaatttcactccaaaatattctattaatcgatgaagctagaagtctgaatacaaatttaaatatatttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccttggcggggggggggggggcccataaaacccctaaaggggggccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="74204" stop="49633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74161" g_stop="74151" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.727"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74150" i_stop="73898" i_length="253">
            <donor d_prob="0.857" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73897" g_stop="73700" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="208" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73699" i_stop="72361" i_length="1339">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72360" g_stop="72340" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="229" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72339" i_stop="71588" i_length="752">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71587" g_stop="71510" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="307" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E378687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74161" e_stop="74151"/>
          <exon e_start="73897" e_stop="73700"/>
          <exon e_start="72360" e_stop="72340"/>
          <exon e_start="71587" e_stop="71510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATAGAGGTGATTATTTTATATCGATCAATATTTATGGTAAAATAATAAAAATTAATAATAATTGATAGTCGACATGATTAACTATAGTGACAATCGATAGTAAAAATCATTAATGATGAAGGTGATTGATACTAGCAATACAGTTAGTTAAATTAACTCTCGTTAAATTGAAAAATCACTTAAATTAAAACATAGTAAATAAATTAAGAAACTAATTAAATTGATTTATTGATAAAATTTATTTTTTGTGTCAATGCAGGAGGGCTAAAGAGAAATATATAGAAGATGTATGTAATAGTGATTTCATTGCCTTTGATTATATTGGTATTGATTGTAGCCATTGTTTGTTACATGTGTGGAAGATCAAGGGGTTGTTGCTGAATAAATTTCACTCCAAAATATTCTATTAATCGATGAAGCTAGAAGTCTGAATACAAATTTAAATATATTTATTTAAATCATATAGTAAATTTGTTATATTTGGGTTTTAATTATAGAACTCAAGCTAACACTATATTATATTTTCACTTCTTTCTTGAATTTGTATTTATGAAAGTACGATACGATTGAAATTAAATTAATCGAGTCAATAAATTTCATATCGAGAGCGCGATTGTCATGACATGACAAGGAAGGAACCTCGTCTAAACTCATACACGTAGAAAGTTGAAACCACTTCGTGTCACTTTATGATATTTTGTTATTTTTATTTTTTATTCTTTTAATTTGCTTATATCATATGAACTCTCCATTTTTTTTCTTTTGTCTTACTAAAAAAAAATAAAATTCTCAAACTCTTATTTTTCCCTTTTTATTTATGTGAGTTTTAAAATTTAAAAAGAAAAAGTTCACTCTAAGTAGTTTTGATACTAGACAAGGTATGTACATATTTTCTTAATTTTTATTATGGTATGTAAAATTAATTTTGAGCTTACCTTACAATTGATTTAAAATTAATTAAAAAAAATTATTTTTGTGTTAATGCAGGGATATATCATATAATTAAAAAAAAAATGCATGTACTAGTGATATCATTGCCTTTGGCTATATTGGTATTGATTTTAATAGCCATTGCTTGTTACTTCTTTGGAAAATCAAAAGGTAAATGGGGATTATATTATTCAAAATAATTCCTAATAAAAAATAAAATAAAATGGAACCCTTTTAATTTTGTTCAATGAACTTTTTTTTTTTTTTAAAAAAAAATTCGGGGGGAACCGGGAATTTTAAAAAAAAAAAAAATTTTTTTTAAGGGGTTTTAAAAAAAAATGGAAGGTTTTTTAAAAAGGCTTCCTTTAAAAATTTGTAAAATAAAAAACCAACCTTTATTTTTTCCCCCCAAATTTTTTATTTTTTCGGGGGGAATTTGGGCCCCAAAAAAAAAATTTTGGGGGGAAGGCCCTTAAAAAATTTTTTTAAAAAAAAAAAAAAAAATTTTTTTTTTCAAAATTAATTTTTTTACCAGATTTTAAATTTTTTTTCCAAAAAACCATTAGGGGGTTCTAATTTTTTTTTTTTTTTCCAAACCCCCCCAAATTTTTAAAAATAAAAAAAAATTTTTACCCCCCCCCCTTAAAAGGAACCCCCCCAAAAAAAAAAAATTAAATTTTGGCCTTCCCCCAAAAAATTTTAAAATTTCCCCCTTTGAAAATTTTTTTTGCCTTCCCCCTTTTGAAAATTAATTTTTTTTTTTTTAAAAATAAATTTAAAACCCCTTTATTTTAATTTTTAAAAAAAAAAAATTTAAATTTTTAAAATTTTGGGAAAAAAAAAAAAAAATTTTAAATTTTTTTTCCAAAAAAAAAAAAAAAAACCAAATTTTTTGTTTTTAACCCCAAAAAAAAAAAATCCTGTAAAAAAAATTCCAAAAGAGGGGGGAAAAAAATTCCCCCCTAGAAAAGGGTTTTGAATTTTAAACAATTTTTACCCCCAAAAACCCAAACCCAATTTGGAAACCAAAAAAAAAAATCACCAAACCGGGGGGGTAGGGGGGTTGGGGGGGAAAAAAACCCCCCCTTTTAACCCCCGGTTGGGGCCCTAAAAAGGGGGGCCACAACAAAACACCCCCTTTTTCAAAAAAAAAAAAAATAATTCACCTCTTTCTTTTTAAGGGGCGGGGTTTTTTTTTCCAAAAAAAAAATTTTAAAAAAATTTTTAAAAAAAAATTTTCTTAAAATAAAAGGGGCAACAAAAAAATATACAAAAAATTTTTCGCAAAAATTTTTTTTTAAAAAAAAATTTTCTTAAAAAAAAATTTAATATTATTTAAATAAAAAAAAAACCAAATTAAAGATTGTGTCAAAAAAAATATTTTTTTTTATAAAATACCACCAAAAAAAAAAAAAAACGCCTGTTTCTACCCCCCCTCGTTTAATTAAAAAACCCCCCTTTTTAAATACCCCAAAACACCCCACTACTACCCCTTCCTTTTTCTCTAACTATTATTATTTTTTTTTTTTTTTTTATTAATAAAAAAAAAAACAACACCTCGCCGGGCGCCGCCGGCCCGCTCCCCCAGCAAAAACTCCCCCCCTCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAA</genome_strand>
        <mrna_strand>AGATAA-AGAG.............................................................................................................................................................................................................................................................GAGGGCTAAAGAGAAATATATAGAAGATGTATGTAATAGTGATTTCATTGCCTTTGATTATATTGGTATTGATTGTAGCCATTGTTTGTTACATGTGTGGAAGATCAAGGGGTTGTTGCTGAATAAATTTCACTCCAAAATATTCTATTAATCGATGAAGCTAGAAGTCTGAATACAAATTTAAATATATTTATTTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACCCCTTGGCGGGGGGGGGGGGGGCCCATAAAACCCCTAAAGGGGGGCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229552" ref_strand="-" ref_description="SGN-E229552 [cLEL-4-B20](-)">
      <seq>ttttttttttttttttttttttatatgaaataacatcttttcccggcttttaggccgttttatttcaccattgcagttttacagtaacctcgttacaacattttatcctatgtatacagattgaggtacaagggatgggggtgaataagctgcaaagattcaaaatacacatgaggtgcaagggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="72040" stop="76123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73135" g_stop="73163" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.690"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73164" i_stop="75664" i_length="2501">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75665" g_stop="75823" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="188" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E229552" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229552" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73135" e_stop="73163"/>
          <exon e_start="75665" e_stop="75823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGCATTTTTTTTTTAATTATATGATATATCCCTGCATTAACACAAAAATAATTTTTTTTAATTAATTTTAAATCAATTGTAAGGTAAGCTCAAAATTAATTTTACATACCATAATAAAAATTAAGAAAATATGTACATACCTTGTCTAGTATCAAAACTACTTAGAGTGAACTTTTTCTTTTTAAATTTTAAAACTCACATAAATAAAAAGGGAAAAATAAGAGTTTGAGAATTTTATTTTTTTTTAGTAAGACAAAAGAAAAAAAATGGAGAGTTCATATGATATAAGCAAATTAAAAGAATAAAAAATAAAAATAACAAAATATCATAAAGTGACACGAAGTGGTTTCAACTTTCTACGTGTATGAGTTTAGACGAGGTTCCTTCCTTGTCATGTCATGACAATCGCGCTCTCGATATGAAATTTATTGACTCGATTAATTTAATTTCAATCGTATCGTACTTTCATAAATACAAATTCAAGAAAGAAGTGAAAATATAATATAGTGTTAGCTTGAGTTCTATAATTAAAACCCAAATATAACAAATTTACTATATGATTTAAATAAATATATTTAAATTTGTATTCAGACTTCTAGCTTCATCGATTAATAGAATATTTTGGAGTGAAATTTATTCAGCAACAACCCCTTGATCTTCCACACATGTAACAAACAATGGCTACAATCAATACCAATATAATCAAAGGCAATGAAATCACTATTACATACATCTTCTATATATTTCTCTTTAGCCCTCCTGCATTGACACAAAAAATAAATTTTATCAATAAATCAATTTAATTAGTTTCTTAATTTATTTACTATGTTTTAATTTAAGTGATTTTTCAATTTAACGAGAGTTAATTTAACTAACTGTATTGCTAGTATCAATCACCTTCATCATTAATGATTTTTACTATCGATTGTCACTATAGTTAATCATGTCGACTATCAATTATTATTAATTTTTATTATTTTACCATAAATATTGATCGATATAAAATAATCACCTCTATTATTGATTATGACTATTCAAACATCACCTTTGGTCCACATATGCACAATCAAACACAATAATCACTCACCAAACGTTATTAAGTTCTATCACAATTTATTTTTAAATATATTTTATCAAATATTTACTAATCATACGAATTCAAACAATCTTAATTATTTAGCGTTAAGTAAAAAAGGGAATTGAACGTAAAAAAAAAAAAAAGATTGTGACACAAAAGTGCATGAGGAAACAATAGAAATGGATTAATTGCTTATCTAATACTCAAATCAGATCAATAATCGATATTTAAATTTCATTGTATTAAAATGTAGTTAATTATTTCTTTTTATTCTTCTATTTTAGTTGAATTATACATGCTAAAGTACATAAAATTCGATAGAAATACGTACCTCTTTATCTACCAAAACTTGTAATTGATCTTTGTTGTCAATAAATCAAAGCTAAAACTCACATAAATAGAATGGGAAAAGAGAAGTTAAGCAAATGTTTAGAAACTTCGTAAGAAAGAAAAGATAAGTGGAGAGTGATATAATGCAATAGAAAGAAGAATGAAAAAGACACCAACTTTATTCTACGTGTGTGATGATAGACCACAATTCATTTAACTTTTTCTTTCGAAATAAAATTTATCGATTCGATTAATTAAATTTCAATAAAAAAATTTGACTCAATATCAACCACTAAATCACAGTCTATTGTGTTATTTATGAAATTTGAAATATAAGAGGGAATAATGTAGTACTATTTTTTCAAAATAGATTATTTATATATGTTTACAAAAAATTAATAATTAAATTTTTATTGAACCTATAACGATGACAATAATTTCAACTAAAGATAAGGATAAAGAGTTTTTTTATTGGAATATGGTTGTCCTCTTCTAGCCATTCACATTCATCCTTTTTGATCTTTATACTCCTTTTATTGCAATTAGGTCACAAATCTAAAAAAAAACAAAAAATTAATCACAAAAAGTTATTTACATATTTTGAGAACACAAAGTTTCTCATATTATGTCACAAAAAATTAATCACACAAAAGTTATTTACATATTTTGAGAACACAAAGTTTCTCATATTATGTCGAGAGAAGTATTATTCTCCTCTAACAACCAATAATGAGTTGCGATGGAATCACTAAGAATCTTTAGTTAAATAAAATGTGACGAGCTCAAACCCTAAGTAAGAAAAACACCTATTACGTAGCACTTTCCCCTCTTGCGCAATAAAGTGCAAACTACAACACAACACATACCCCGTGTAGTCCCACATAATGAGTTTGAAACGTTTAACTTACGCTTACCTCGGAACTAGAGGACCAAGTGGTTTCTTATGCCTACCTCAGAGCTTAGAGGACGAGGTGGTTTCTGATAGACCCTCGGATCAAGGAAAGTAGTAATATAACAACAACCTTTTGATATTAAAAGTAATTCAGAGGTAGAGGTTGTTTCCATTGGTTCAAGATGGCACTATGGAAACAAAAAGCAAGAAAACTGCATATCTTGTAATAACATCTTTTCCCGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACAGTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGATGGGGGTGAATAAGCTGCAAAGATTCAAAATACACATGAGGTGCAAGGGAGGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTATATGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACATCTTTTCCCGGCTTTTAGGCCGTTTTATTTCACCATTGCAGTTTTACAGTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGATGGGGGTGAATAAGCTGCAAAGATTCAAAATACACATGAGGTGCAAGGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370023" ref_strand="+" ref_description="SGN-E370023 [TUS-26-F6]">
      <seq>agataaagaggagggctaaagagaaatatatagaagatgtatgtaatagtgatttcattgcctttgattatattggtattgattgtagccattgtttgttacatgtgtggaagatcaaggggttgttgctgaataaatttcactccaaaatattctattaatcgatgaagctagaagtctgaatacaaatttaaatatatttatttaaaaaaaaaaaaaaatttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="74204" stop="73375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74161" g_stop="74151" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.727"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74150" i_stop="73898" i_length="253">
            <donor d_prob="0.857" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73897" g_stop="73673" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="235" r_length="225" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E370023" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74161" e_stop="74151"/>
          <exon e_start="73897" e_stop="73673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATAGAGGTGATTATTTTATATCGATCAATATTTATGGTAAAATAATAAAAATTAATAATAATTGATAGTCGACATGATTAACTATAGTGACAATCGATAGTAAAAATCATTAATGATGAAGGTGATTGATACTAGCAATACAGTTAGTTAAATTAACTCTCGTTAAATTGAAAAATCACTTAAATTAAAACATAGTAAATAAATTAAGAAACTAATTAAATTGATTTATTGATAAAATTTATTTTTTGTGTCAATGCAGGAGGGCTAAAGAGAAATATATAGAAGATGTATGTAATAGTGATTTCATTGCCTTTGATTATATTGGTATTGATTGTAGCCATTGTTTGTTACATGTGTGGAAGATCAAGGGGTTGTTGCTGAATAAATTTCACTCCAAAATATTCTATTAATCGATGAAGCTAGAAGTCTGAATACAAATTTAAATATATTTATTTAAATCATATAGTAAATTTGTTATATTTGG</genome_strand>
        <mrna_strand>AGATAA-AGAG.............................................................................................................................................................................................................................................................GAGGGCTAAAGAGAAATATATAGAAGATGTATGTAATAGTGATTTCATTGCCTTTGATTATATTGGTATTGATTGTAGCCATTGTTTGTTACATGTGTGGAAGATCAAGGGGTTGTTGCTGAATAAATTTCACTCCAAAATATTCTATTAATCGATGAAGCTAGAAGTCTGAATACAAATTTAAATATATTTATTTAAAAAAAAAAAAAAATTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232627" ref_strand="+" ref_description="SGN-E232627 [cLEL-5-P16](-)">
      <seq>atacctcccatgcacctcatgtgaattttgaatctttgcagcttattcacccccatcccttgtacctcaatctgtatacataggataaaatgttgtaacgaggttactgtaaacctgcaatggtgaaatcaaacgggctaaaagccgggaaaaaatgttatttcagataaaaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="76125" stop="27128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75825" g_stop="75661" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75660" i_stop="75077" i_length="584">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75076" g_stop="75051" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="190" r_length="25" r_score="0.654"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E232627" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75825" e_stop="75661"/>
          <exon e_start="75076" e_stop="75051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATATGCAGTTTTCTTGCTTTTTGTTTCCATAGTGCCATCTTGAACCAATGGAAACAACCTCTACCTCTGAATTACTTTTAATATCAAAAGGTTGTTGTTATATTACTACTTTCCTTGATCCGAGGGTCTATCAGAAACCACCTCGTCCTCTAAGCTCTGAGGTAGGCATAAGAAACCACTTGGTCCTCTAGTTCCGAGGTAAGCGTAAGTTAAACGTTTCAAACTCATTATGTGGGACTACACGGGGTATGTGTTGTGTTGTAGTTTGCACTTTATTGCGCAAGAGGGGAAAGTGCTACGTAATAGGTGTTTTTCTTACTTAGGGTTTGAGCTCGTCACATTTTATTTAACTAAAGATTCTTAGTGATTCCATCGCAACTCATTATTGGTTGTTAGAGGAGAATAATACTTCTCTCGACATAATATGAGAAACTTTGTGTTCTCAAAATATGTAAATAACTTTTGTGTGATTAATTTTTTGTGACATAATATGAGAAACTTTGTGTTCTCAAAATATGTAAATAACTTTTTGTGATTAATTTTTTGTTTTTTTTTAGATTTGTGACCTAATTGCAATAAAAGGAGTATAAAGATCAAAAAGGATGAAT</genome_strand>
        <mrna_strand>ATACCTCCCATGCACCTCATGTGAATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAACCTGCAATGGTGAAATCAAACGGGCTAAAAGCCGGGAAAAAATGTTATTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-TAAAAAAATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746724" ref_strand="+" ref_description="SGN-E746724 [GI|77747169]">
      <seq>cttgttcatgtcaaatgggttgctaagtgatgctgtagtgctagtttcctgcgatctctgggcttgctaaccatttaaatcaaataatggagtctgaaactctgactagagaatataggcggcccagcatgcttcagcgagtactttctgcttctgtgccaatgctgttgattgcagttggctatgttgatcctgggaaatgggctgcaatggttgatggaggagcccgatttgggtttgatttggtcatgctagtactcttgttcaattttgctgccattctgtgccagtatctgtctgcttgtatagccttggttacagaccgagatcttgcgcagatttgcagtgaagaatatgacaaagttacatgcatattcctaggaattcaagctgaggtttcgatgattgctttggacctcacaatggttttgggcactgcccatgggcttaatgttgtgtttggagttgacctgtttagctgtgttttcctgactgcaaccggtgccattttgtttccactgcttgcttctctcttggacaatggcagtgcaaaattcttatgtattggctgggcaagctctgtactgctctcttatgtttttggagtggttataactctacctgaaactccattctccattggtggtgtgctgaataagtttagtggagagagtgcatttgcattgatgagtcctcttggagcaagtattatgcctcacaatttttacctccattcttctattgtacagcaaggtaaggaatcaacagagctttccaggggagctctgtgtcaggaccatttttttgccattgttttcatattcagtggcattttcctggtcaactatgccgcgatgaattcagcagcgaatgtgtcttacagtactggccttttgttgctgacatttcaggacacattgtcattgctcgatcaggttttcagaagctcagttgcaccattcaccataatgctggttacatttatttccaatcaagttacaccactaacttgggatcttggtagacaagcagttgtgcatgacttatttggaatggacatcccaggctggcttcatcatgtgacgatcagagttatttccattgtcccagctctttattgtgtatggagttcaggagctgaaggcctatatcagttacttatactgacacaggttgtggtggctcttgtccttccatcttctgtcatacccctgttcagagttgcttcttccagatcaattatgggtatccacaaaatttctcagttaatggagttcttatctcttggcacatttattggcttacttggcctaaagattatatttgtcatagagatgatatttggaaatagtgattgggttaataatttgaagtggaatattgggagtagtgtgtctactccatatttttttctcctcatcgcagcctctttatgtctttgtctgatgctgtggttagcagttactcctctgaaatctgcaagttccaggttcgatgctcaggcgtttctgcaaacgcatgtgcctgagccatattcggagtgtaatcaacttggtgcgagtaatgctatgtttggtctagtagaaggatcctcccaaaagcaagaaggtgcatttcatgtggaaaaatccttggtaagccatccagatttatcaactaaagatcctgatcaactcttgccagaatctctcttggattttgaaaaggtccatcagttggctactattgatgagagcaaatctgaaacaacattttcagctcctgctgtcgttcatcctgaggtacctgtatcagcaggagcaagtcccagtgtgaaaagtgtttgtaatgaggtttctggtgttgtatcagtggataccagtgtcttcaatactgaaactgtggatgtcgcagagaagactctcagaattgaaggggacatggcaaatgacagggatgatggagattcgtgggaagagcctgaagaggcaatcaaaggagtatctgagaacgctcaatcttttatttctgatggtccggggtcatacaaaagtctaagtggaaaactagaggacacggggagtggaacaggaagtctatcaagattagcaggtcttggtcgtgcagctaggaggcagttaacagaagctctaaatgagttttgggggcagctttttgattaccatggcgtggcaacagcagaagcgaagtccaagaaactggatataatacttggtctggattcaaagatgaatccaaaacctgcccctgcatcattaaaagttgaaagcagtgcgtatattccatcggggagtgcaaggataccagagcctctgatcaactcgcatgtgtactctcccaagcagcaatttgcgtcaaacattgtggactctgcttatagagtcccaaaggagccatcttcgacatcttctatgtggtctaaccatatgaaattagtaggtgcatatgtgcaaagttccaacagcaacatgcttgactcaggggagaggcgctattctagtatgcggattccagcgacttctgctggctatgatcagcagcctgccactgtgcatggatatcagattactgcttaccttaatcaacttgcgaaagaaagaggatctgattatttaaatgggcaactggagtcaccatctcctcgttctgtatcatcactgacgtcaaactatgcagaaccattggctcgtgtttcggggcaaaaacctcagagtggagtcagtagtcgagcaccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggttcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtagattgaccaacattggtgaatcacacttctcttccaacaggaaacccggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttccccactgcggagaaggttgtgtttggaaagtagatctgattataagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcatagtagatctggcattttcaaagccccattctccgacgagccattgtttttgtcttcaaattccggctggccgccagcaaaaggcaagcccccctccaatttctaatggaaacttgccgccacaagcaaaacagggtcgaggaaaatgcacgactgcagcaatgctcttagagatgatcaaagacgtggagacagcaatttcctgtcgaaagggacgaacgggcactgcagcaggggatgtagcctttcctaaaggaaaagagaacctggcatccgtcctcaagcgctataaacgtcgattatccaataagccggtaggaaaccaggaggtggctggagtcgccggaccgcgcaaagtaacgctgtctgcctcatcaccccctttcgtcttgtaacgctcttttctcagttcatagcaaatgactggtgagatcaccattgttagacttgttcttagtttctgtgaattatccccccctccccaactatacctcccttgcacctcatgtgtattttgaatctttgcagcttattcacccccatcccttgtacctcaatctgtatacataggataaaatgttgtaacgaggttactgtaaaactgcaatggtgaaatgaaacgggctaaaaggcgggaaaagatgttattacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="81692" stop="49633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81692" g_stop="81656" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="425" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81655" i_stop="81565" i_length="91">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81564" g_stop="81454" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="536" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81453" i_stop="81331" i_length="123">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81330" g_stop="81118" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="749" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81117" i_stop="79756" i_length="1362">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79755" g_stop="79570" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="935" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79569" i_stop="79480" i_length="90">
            <donor d_prob="0.529" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79479" g_stop="76777" g_length="2703"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="3638" r_length="2703" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76316" g_stop="75655" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="3639" r_stop="4300" r_length="662" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75654" i_stop="75102" i_length="553">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75101" g_stop="75059" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="4301" r_stop="4343" r_length="43" r_score="0.488"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E746724" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>3955</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81692" e_stop="81656"/>
          <exon e_start="81564" e_stop="81454"/>
          <exon e_start="81330" e_stop="81118"/>
          <exon e_start="79755" e_stop="79570"/>
          <exon e_start="79479" e_stop="76777"/>
          <exon e_start="76316" e_stop="75655"/>
          <exon e_start="75101" e_stop="75059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAGGTTTCGATGATTGCTTTGGACCTCACAATGGTAGTTTCACTATTTCATTTTGTGTGCACTCTGGCTTCCGAGATTATGACGTTTTATAGCTCATCAACTTACGACTACTTGATTCTGATAGGTTTTGGGCACTGCCCATGGGCTTAATGTTGTGTTTGGAGTTGACCTGTTTAGCTGTGTTTTCCTGACTGCAACCGGTGCCATTTTGTTTCCACTGCTTGCTTCTCTCTTTGTAAGTCTTGCTACTAACTATCCTTGTGGACTTTCTGTTATTGGCATCTTGAATTATCTCAGATTCTTTTCGTATGGTCCTAGTCTCTCATAAATAATAATGATTTCAAAATACTATGTCTAGGACAATGGCAGTGCAAAATTCTTATGTATTGGCTGGGCAAGCTCTGTACTGCTCTCTTATGTTTTTGGAGTGGTTATAACTCTACCTGAAACTCCATTCTCCATTGGTGGTGTGCTGAATAAGTTTAGTGGAGAGAGTGCATTTGCATTGATGAGTCTTCTTGGAGCAAGTATTATGCCTCACAATTTTTACCTCCATTCTTCTATTGTACAGGTATCCTCTCCCTCTCTCTCCCCTCTCTCTCTTTATGTGTGTGTGTGTGTTTGTGCATGGGCATGCATAAATATTGATCTGTGCATGCAGAACGGAGGCACGTCTGTAACTTATAAAACAGTCTGTCGCTGCACTGATTGTTAAGATAATTATTGGTATGCTAGATTGGTCCCTGATAACTCAAGGATAAATGTATGTTCAGTCTATTTTGTTGTTCCGACCAGTCATGTGTGAATAGTTGTACTGCTTTCTTAGATTCTGTAGCTCTTTAAGTCTAGACCATCCATAGTCATGTGAGGTCCTCTCTAGATTTATTGGTTGTGGCTGGCTCCCAAGTCTTAACTTGTACTATGTAATGGGGCTAGCTTATCTACTTATTTACTCTTTGCATCTTCTAGATGCCAGTAATAAAACAACTTCATCAAAAAAAAAGGTTGGCCTGATAAATCTTTCACACAACAAACTAGCAGACACTAGCCCCTTAATAAACAATATTGGCATGTATGACTTGTTATGCATGATGTTGATCGCATGAATTCTGTATTTGCTTCTGTCTTTTGGTTGTCAGTTATGATTCCTGACCTTACTGCTCATCCTTGGGACTTAGGTTGGCTTGACCATGATCAGGACAGTTACTTAGGTTGACTCTTAAAAGAGATAAAATCTGTTGAAGCAATCCGTGATTCTAAAGCCTCTATTGTTGTTAAGATTTTCATGCTAGGGATCATAATTTTTATGGTGGATGAGTTTATTTCTTCAGAAAAAAGGAAACCAAACTACATCAAAAATAGTGTTTTCTCTCTTTTTCCCCTTTTAAGGGGGTGGGGCGTGGGGGAAGTGAGAAGGTTAAGGGGGAAGTGAGAAGGTTAAAGAGCATGTTGAATATGACCTTGTGTTGCCTTTGCCTTTTCATCTGCACCGAGTCTATCTGTATTATATAATATATATGTGTATCCCAGAGCCGTAAGCCAATATTCACAGGGCAAGGGTACATAGGCATGATTCCAACAGTCTAGAAGTGTGAAATATGTTCAGACATGCTCAAATCATCAATGATGTGTCAACATCCTTTTTGAAAAAAATGATGCGTCTTTGTCATTATCAGTGGATGTGGTTTTTTTGTGCAGCCCAAGTATTTCCATGTTTCTGAAGCATTTTTTTTTGGATATTGAAATGACAGATTTTTAGAAATTTCCATGTTTCATATTATTTGTATGGTTTCCATTAGTCTCAGCAATTATCACAGCCTAGAAATAACTTTTAATCCACAGCATTTTGATTTTTCGACTCGTTGCTACTTGTGTTGGTGTGATCAATACTAGACTATCTCGTCTTTACCTCTATATAAATTCTTTTCTGCAGCAAGGTAAGGAATCAACAGAGCTTTCCAGGGGAGCTCTGTGTCAGGACCATTTTTTTGCCATTGTTTTCATATTCAGTGGCATTTTCCTGGTCAACTATGCCGCGATGAATTCAGCAGCGAATGTGTCTTACAGTACTGGCCTTTTGTTGCTGACATTTCAGGACACATTGTCATTGCTCGATCAGGTTAGATTCAAACAGCAAAAGATGGATCCGTCTAAGCTTGGGCCTTTGTGAACCAGAGATATTAATACTTTTCGTTTATTATTGATACAGGTTTTCAGAAGCTCAGTTGCACCATTCACCATAATGCTGGTTACATTTATTTCCAATCAAGTTACACCACTAACTTGGGATCTTGGTAGACAAGCAGTTGTGCATGACTTATTTGGAATGGACATCCCAGGCTGGCTTCATCATGTGACGATCAGAGTTATTTCCATTGTCCCAGCTCTTTATTGTGTATGGAGTTCAGGAGCTGAAGGCCTATATCAGTTACTTATACTGACACAGGTTGTGGTGGCTCTTGTCCTTCCATCTTCTGTCATACCCCTGTTCAGAGTTGCTTCTTCCAGATCAATTATGGGTATCCACAAAATTTCTCAGTTAATGGAGTTCTTATCTCTTGGCACATTTATTGGCTTACTTGGCCTAAAGATTATATTTGTCATAGAGATGATATTTGGAAATAGTGATTGGGTTAATAATTTGAAGTGGAATATTGGGAGTAGTGTGTCTACTCCATATGTTTTTCTCCTCATCGCAGCCTCTTTATGTCTTTGTCTGATGCTGTGGTTAGCAGTTACTCCTCTGAAATCTGCAAGTTCCAGGTTCGATGCTCAGGCGTTTCTGCAAACGCATGTGCCTGAGCCATATTCAGAGTGTAATCAACTTGGTGCGAGTAATGCTATGTTTGGTCTAGTAGAAGGATCCTCCCAAAAGCAAGAAGGTGCATTTCATGTGGAAAAATCCTTGGTAACCCATCCAGATTTATCAACTAAAGATCCTGATCAACTCTTGCCAGAATCTCTCTTGGATTTTGAAAAGGTCCATCAGTTGGCTACTATTGATGAGAGCAAATCTGAAACAACATTTTCAGCTCCTGCTGTCGTTCATCCTGAGGTACCTGTATCAGCAGGAGCAAGTCCCAGTGTGAAAAGTGTTTGTAATGAGGTTTCTGGTGTTGTATCAGTGGATACCAGTGTCTTCAATACTGAAACTGTGGATGTCGCAGAGAAGACTCTCAGAATTGAAGGGGACATGGCAAATGACAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATATGCAGTTTTCTTGCTTTTTGTTTCCATAGTGCCATCTTGAACCAATGGAAACAACCTCTACCTCTGAATTACTTTTAATATCAAAAGGTTGTTGTTATATTACTACTTTCCTTGATCCGAGGGTCTATCAGAAACCACCTCGTCCTCTAAGCTCTGAGGTAGGCATAAGAAACCACTTGGTCCTCTAGTTCCGAGGTAAGCGTAAGTTAAACGTTTCAAACTCATTATGTGGGACTACACGGGGTATGTGTTGTGTTGTAGTTTGCACTTTATTGCGCAAGAGGGGAAAGTGCTACGTAATAGGTGTTTTTCTTACTTAGGGTTTGAGCTCGTCACATTTTATTTAACTAAAGATTCTTAGTGATTCCATCGCAACTCATTATTGGTTGTTAGAGGAGAATAATACTTCTCTCGACATAATATGAGAAACTTTGTGTTCTCAAAATATGTAAATAACTTTTGTGTGATTAATTTTTTGTGACATAATATGAGAAACTTTGTGTTCTCAAAATATGTAAATAACTTTTTGTGATTAATTTTTTGTTTTTTTTTAGATTTGTGACCTAATTGCAATAAAAGGAGTATAAAGATCAAAAA</genome_strand>
        <mrna_strand>AGCTGAGGTTTCGATGATTGCTTTGGACCTCACAATG...........................................................................................GTTTTGGGCACTGCCCATGGGCTTAATGTTGTGTTTGGAGTTGACCTGTTTAGCTGTGTTTTCCTGACTGCAACCGGTGCCATTTTGTTTCCACTGCTTGCTTCTCTCTTG...........................................................................................................................GACAATGGCAGTGCAAAATTCTTATGTATTGGCTGGGCAAGCTCTGTACTGCTCTCTTATGTTTTTGGAGTGGTTATAACTCTACCTGAAACTCCATTCTCCATTGGTGGTGTGCTGAATAAGTTTAGTGGAGAGAGTGCATTTGCATTGATGAGTCCTCTTGGAGCAAGTATTATGCCTCACAATTTTTACCTCCATTCTTCTATTGTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTAAGGAATCAACAGAGCTTTCCAGGGGAGCTCTGTGTCAGGACCATTTTTTTGCCATTGTTTTCATATTCAGTGGCATTTTCCTGGTCAACTATGCCGCGATGAATTCAGCAGCGAATGTGTCTTACAGTACTGGCCTTTTGTTGCTGACATTTCAGGACACATTGTCATTGCTCGATCAG..........................................................................................GTTTTCAGAAGCTCAGTTGCACCATTCACCATAATGCTGGTTACATTTATTTCCAATCAAGTTACACCACTAACTTGGGATCTTGGTAGACAAGCAGTTGTGCATGACTTATTTGGAATGGACATCCCAGGCTGGCTTCATCATGTGACGATCAGAGTTATTTCCATTGTCCCAGCTCTTTATTGTGTATGGAGTTCAGGAGCTGAAGGCCTATATCAGTTACTTATACTGACACAGGTTGTGGTGGCTCTTGTCCTTCCATCTTCTGTCATACCCCTGTTCAGAGTTGCTTCTTCCAGATCAATTATGGGTATCCACAAAATTTCTCAGTTAATGGAGTTCTTATCTCTTGGCACATTTATTGGCTTACTTGGCCTAAAGATTATATTTGTCATAGAGATGATATTTGGAAATAGTGATTGGGTTAATAATTTGAAGTGGAATATTGGGAGTAGTGTGTCTACTCCATATTTTTTTCTCCTCATCGCAGCCTCTTTATGTCTTTGTCTGATGCTGTGGTTAGCAGTTACTCCTCTGAAATCTGCAAGTTCCAGGTTCGATGCTCAGGCGTTTCTGCAAACGCATGTGCCTGAGCCATATTCGGAGTGTAATCAACTTGGTGCGAGTAATGCTATGTTTGGTCTAGTAGAAGGATCCTCCCAAAAGCAAGAAGGTGCATTTCATGTGGAAAAATCCTTGGTAAGCCATCCAGATTTATCAACTAAAGATCCTGATCAACTCTTGCCAGAATCTCTCTTGGATTTTGAAAAGGTCCATCAGTTGGCTACTATTGATGAGAGCAAATCTGAAACAACATTTTCAGCTCCTGCTGTCGTTCATCCTGAGGTACCTGTATCAGCAGGAGCAAGTCCCAGTGTGAAAAGTGTTTGTAATGAGGTTTCTGGTGTTGTATCAGTGGATACCAGTGTCTTCAATACTGAAACTGTGGATGTCGCAGAGAAGACTCTCAGAATTGAAGGGGACATGGCAAATGACAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGAACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCGTGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCAAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745047" ref_strand="+" ref_description="SGN-E745047 [GI|74099705]">
      <seq>gtgtgtctactccatatgtttttctcctcatcgcagcctctttatgtctttgtctgatgctgtggttagcagttactcctctgaaatctgcaagttccaggttcgatgctcaggcgtttctgcaaacgcatgtgcctgagccatattcggagtgtaatcaacttggtgcgagtaatgctatgtttggtctagtagaaggatcctcccaaaagcaagaaggtgcatttcatgtggaaaaatccttggtaagccatccagatttatcaactaaagatcctgatcaactcttgccagaatctctcttggattttgaaaaggtccatcagttggctactattgatgagagcaaatctgaaacaacattttcagctcctgctgtcgttcatcctgaggtacctgtatcagcaggagcaagtcccagtgtgaaaagtgtttgtaatgaggtttctggtgttgtatcagtggataccagtgtcttcaatactgaaactgtggatgtcgcagagaagactctcagaattgaaggggacatggcaaatgacagggatgatggagattcgtgggaagagcctgaagaggcaatcaaaggagtatctgagaacgctcaatcttttatttctgatggtccggggtcatacaaaagtctaagtggaaaactagaggacacggggagtggtacaggaagtctatcaagattagcaggtcttggtcgtgcagctaggaggcagttaacagaagctctaaatgagttttgggggcagctttttgattaccatggcgtggcaacagcagaagcgaagtccaagaaactggatataatacttggtctggattcaaagatgaatccaaaacctgcccctgcatcattaaaagttgaaagcagtgcgtatattccatcggggagtgcaaggataccagagcctctgatcaactcgcatgtgtactctcccaagcagcaatttgcgtcaaacattgtggactctgcttatagagtcccaaaggagccatcttcgacatcttctatgtggtctaaccatatgaaattagtaggtgcatatgtgcaaagttccaacagcaacatgcttgactcaggggagaggcgctattctagtatgcggattccagcgacttctgctggctatgatcagcagcctgccactgtgcatggatatcagattactgcttaccttaatcaacttgcgaaagaaagaggatctgattatttaaatgggcaactggagtcaccatctcctcgttctgtatcatcactgacgtcaaactatgcagaaccattggctcgtgtttcggggcaaaaacctcagagtggagtcagtagtcgagcaccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggttcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtagattgaccaacattggtgaatcacacttctcttccaacaggaaacccggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttccccactgcggagaaggttgtgtttggaaagtagatctgattataagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcatagtagatctggcattttcaaagccccattctccgacgagccattgtttttgtcttcaaattccggctggccgccagcaaaaggcaagcccccctccaatttctaatggaaacttgccgccacaagcaaaacagggtcgaggaaaatgcacgactgcagcaatgctcttagagatgatcaaagacgtggagacagcaatttcctgtcgaaagggacgaacgggcactgcagcaggggatgtagcctttcctaaaggaaaagagaacctggcatccgtcctcaagcgctataaacgtcgattatccaataagccggtaggaaaccaggaggtggctggagtcgccggaccgcgcaaagtaacgctgtctgcctcatcaccccctttcgtcttgtaacgctcttttctcagttcatagcaaatgactggtgagatcaccattgttagacttgttcttagtttctgtgaattatccccccctccccaactatacctcccttgcacctcatgtgtattttgaatctttgcagcttattcacccccatcccttgtacctcaatctgtatacataggataaaatgttgtaacgaggttactgtaaaactgcaatggtgaaatgaaacgggctaaaaggcgggaaaagatgttattacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="79325" stop="49633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79025" g_stop="76777" g_length="2249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2249" r_length="2249" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76316" g_stop="75655" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="2250" r_stop="2911" r_length="662" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75654" i_stop="75102" i_length="553">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75101" g_stop="75059" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="2912" r_stop="2954" r_length="43" r_score="0.488"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E745047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2954</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79025" e_stop="76777"/>
          <exon e_start="76316" e_stop="75655"/>
          <exon e_start="75101" e_stop="75059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTCTACTCCATATGTTTTTCTCCTCATCGCAGCCTCTTTATGTCTTTGTCTGATGCTGTGGTTAGCAGTTACTCCTCTGAAATCTGCAAGTTCCAGGTTCGATGCTCAGGCGTTTCTGCAAACGCATGTGCCTGAGCCATATTCAGAGTGTAATCAACTTGGTGCGAGTAATGCTATGTTTGGTCTAGTAGAAGGATCCTCCCAAAAGCAAGAAGGTGCATTTCATGTGGAAAAATCCTTGGTAACCCATCCAGATTTATCAACTAAAGATCCTGATCAACTCTTGCCAGAATCTCTCTTGGATTTTGAAAAGGTCCATCAGTTGGCTACTATTGATGAGAGCAAATCTGAAACAACATTTTCAGCTCCTGCTGTCGTTCATCCTGAGGTACCTGTATCAGCAGGAGCAAGTCCCAGTGTGAAAAGTGTTTGTAATGAGGTTTCTGGTGTTGTATCAGTGGATACCAGTGTCTTCAATACTGAAACTGTGGATGTCGCAGAGAAGACTCTCAGAATTGAAGGGGACATGGCAAATGACAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATATGCAGTTTTCTTGCTTTTTGTTTCCATAGTGCCATCTTGAACCAATGGAAACAACCTCTACCTCTGAATTACTTTTAATATCAAAAGGTTGTTGTTATATTACTACTTTCCTTGATCCGAGGGTCTATCAGAAACCACCTCGTCCTCTAAGCTCTGAGGTAGGCATAAGAAACCACTTGGTCCTCTAGTTCCGAGGTAAGCGTAAGTTAAACGTTTCAAACTCATTATGTGGGACTACACGGGGTATGTGTTGTGTTGTAGTTTGCACTTTATTGCGCAAGAGGGGAAAGTGCTACGTAATAGGTGTTTTTCTTACTTAGGGTTTGAGCTCGTCACATTTTATTTAACTAAAGATTCTTAGTGATTCCATCGCAACTCATTATTGGTTGTTAGAGGAGAATAATACTTCTCTCGACATAATATGAGAAACTTTGTGTTCTCAAAATATGTAAATAACTTTTGTGTGATTAATTTTTTGTGACATAATATGAGAAACTTTGTGTTCTCAAAATATGTAAATAACTTTTTGTGATTAATTTTTTGTTTTTTTTTAGATTTGTGACCTAATTGCAATAAAAGGAGTATAAAGATCAAAAA</genome_strand>
        <mrna_strand>GTGTGTCTACTCCATATGTTTTTCTCCTCATCGCAGCCTCTTTATGTCTTTGTCTGATGCTGTGGTTAGCAGTTACTCCTCTGAAATCTGCAAGTTCCAGGTTCGATGCTCAGGCGTTTCTGCAAACGCATGTGCCTGAGCCATATTCGGAGTGTAATCAACTTGGTGCGAGTAATGCTATGTTTGGTCTAGTAGAAGGATCCTCCCAAAAGCAAGAAGGTGCATTTCATGTGGAAAAATCCTTGGTAAGCCATCCAGATTTATCAACTAAAGATCCTGATCAACTCTTGCCAGAATCTCTCTTGGATTTTGAAAAGGTCCATCAGTTGGCTACTATTGATGAGAGCAAATCTGAAACAACATTTTCAGCTCCTGCTGTCGTTCATCCTGAGGTACCTGTATCAGCAGGAGCAAGTCCCAGTGTGAAAAGTGTTTGTAATGAGGTTTCTGGTGTTGTATCAGTGGATACCAGTGTCTTCAATACTGAAACTGTGGATGTCGCAGAGAAGACTCTCAGAATTGAAGGGGACATGGCAAATGACAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCGTGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCAAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417362" ref_strand="+" ref_description="SGN-E417362 [STM-25-E22]">
      <seq>ccttttttttacatatcttgtaataacattttttcctgccttttagcccgtttcatttcaccattgcagttttacattaacctcgttacaacattttatcctatgtatacagattgaggtacaaggggtggggtgaataagctgcaaagattcaaatacacatgagatacagggaggtagttgaggagggggggataattcacagaaactaagaacaagtctaacaatggtgatctcaccagtcaattgctatgaactgagaaaggagcattacaagacgaacgggggtgacgaggccgacagcgttactttgcgtggtccagcaactccacccacctcctggtttcctactggcttattggatagtcgacgtttatagcgcttgaggacagatgccaggttctcttttcctttaggaaaggctacatcccctgctgcagtgccagttcgtccctttcgacaggaaattgccgtctccacgtctttgatcatctctaagagcattgctgcagtcgtgcattttcctcggccctgttttgcttgtggcggcaagtttccatttgaaattggaggggggcttgccttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="75352" stop="76538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75652" g_stop="76238" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="591" r_length="582" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E417362" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75652" e_stop="76238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATATCTTGTAATAACATCTTTTCCCGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACAGTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGATGGGGGTGAATAAGCTGCAAAGATTCAAAATACACATGAGGTGCAAGGGAGGTATAGTTGGGGAGGGGGGGATAATTCACAGAAACTAAGAACAAGTCTAACAATGGTGATCTCACCAGTCATTTGCTATGAACTGAGAAAAGAGCGTTACAAGACGAAAGGGGGTGATGAGGCAGACAGCGTTACTTTGCGCGGTCCGGCGACTCCAGCCACCTCCTGGTTTCCTACCGGCTTATTGGATAATCGACGTTTATAGCGCTTGAGGACGGATGCCAGGTTCTCTTTTCCTTTAGGAAAGGCTACATCCCCTGCTGCAGTGCCCGTTCGTCCCTTTCGACAGGAAATTGCTGTCTCCACGTCTTTGATCATCTCTAAGAGCATTGCTGCAGTCGTGCATTTTCCTCGACCCTGTTTTGCTTGTGGCGGCAAGTTTCCATTAGAAATTGGAGGGGGGCTTGCCTTTTGCTG</genome_strand>
        <mrna_strand>TACATATCTTGTAATAACATTTTTTCCTGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACATTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGGT-GGGGTGAATAAGCTGCAAAGATTC-AAATACACATGAGATAC-AGGGAGG--TAGTTGAGGAGGGGGGGATAATTCACAGAAACTAAGAACAAGTCTAACAATGGTGATCTCACCAGTCAATTGCTATGAACTGAGAAAGGAGCATTACAAGACGAACGGGGGTGACGAGGCCGACAGCGTTACTTTGCGTGGTCCAGCAACTCCACCCACCTCCTGGTTTCCTACTGGCTTATTGGATAGTCGACGTTTATAGCGCTTGAGGACAGATGCCAGGTTCTCTTTTCCTTTAGGAAAGGCTACATCCCCTGCTGCAGTGCCAGTTCGTCCCTTTCGACAGGAAATTGCCGTCTCCACGTCTTTGATCATCTCTAAGAGCATTGCTGCAGTCGTGCATTTTCCTCGGCCCTGTTTTGCTTGTGGCGGCAAGTTTCCATTTGAAATTGGAGGGGGGCTTGCCTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610834" ref_strand="+" ref_description="SGN-E610834 [58004]">
      <seq>ggaggtgggtggagttgctggaccacgcaaagtaacgctgtcggcctcatcaccccctttcgtcttgtaatgctcctttctcagttcatagcaattgactggtgagatcaccattgttagacttgttcttagtttctgtgaattatccccccctcctcaactacctccctgtatctcatgtgtatttgaatctttgcagcttattcaccccaccccttgtacctcaatctgtatacataggataaaatgttgtaacgaggttaatgtaaaactgcaatggtgaaatgaaacgggctaaaaggcgggaaaagatgttattacaagatatgtattatgtgatgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="76287" stop="75341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75987" g_stop="75652" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E610834" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75987" e_stop="75652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATATGCA</genome_strand>
        <mrna_strand>GGAGGTGGGTGGAGTTGCTGGACCACGCAAAGTAACGCTGTCGGCCTCATCACCCCCTTTCGTCTTGTAATGCTCCTTTCTCAGTTCATAGCAATTGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCTCAAC--TACCTCCC-TGTATCTCATGTGTA-TTTGAATCTTTGCAGCTTATTCA-CCCCACCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTAATGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623689" ref_strand="+" ref_description="SGN-E623689 [88784]">
      <seq>tttttttgtaataacatcttttcccgccttttagcccgtttcatttcaccattgcagttttacattaacctcgttacaacatttatcctatgtatacagattgaggtacaaaggggtggggtgaataagctgcaaaggattcaaatacacatgagatacagggaggtagttgaggagggggggataattcacagaaactaagaacaagtctaacaatggtgatctcaccagtcaattgctatgaactgagaaaggagcattacaagacgaaagggggtgatgaggccgacagcgttactttgcgtggtccagcaactccacccacctcctggtttcctactggcttattggatagtcgacgtttatagcgcttgaggacggatgccaggttctcttttcctttaggaaaggctacatcccctgctgcagtgcccgttcgtccctttcgacaggaaattgcagtctccacgtctttgatcatctctaagagcattgctgcagtcgtgcattttcctcgaccctgttttgcttgtggcggcaagtttccatttgaaattggaggggggcttgcctttttgctggcggccaaccggaatttgaatgacaaaaacaatggctcgtcggagaacggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="+" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="75356" stop="76591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75655" g_stop="76291" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="+" ref_id="SGN-E623689" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75655" e_stop="76291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTTGTAATAACATCTTTTCCCGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACAGTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGATGGGGGTGAATAAGCTGCAAA-GATTCAAAATACACATGAGGTGCAAGGGAGGTATAGTTGGGGAGGGGGGGATAATTCACAGAAACTAAGAACAAGTCTAACAATGGTGATCTCACCAGTCATTTGCTATGAACTGAGAAAAGAGCGTTACAAGACGAAAGGGGGTGATGAGGCAGACAGCGTTACTTTGCGCGGTCCGGCGACTCCAGCCACCTCCTGGTTTCCTACCGGCTTATTGGATAATCGACGTTTATAGCGCTTGAGGACGGATGCCAGGTTCTCTTTTCCTTTAGGAAAGGCTACATCCCCTGCTGCAGTGCCCGTTCGTCCCTTTCGACAGGAAATTGCTGTCTCCACGTCTTTGATCATCTCTAAGAGCATTGCTGCAGTCGTGCATTTTCCTCGACCCTGTTTTGCTTGTGGCGGCAAGTTTCCATTAGAAATTGGAGGGGGGCTTGCC-TTTTGCTGGCGGCCAGCCGGAATTTGAA-GACAAAAACAATGGCTCGTCGGAGAATGGGGCT</genome_strand>
        <mrna_strand>TTTTTTTGTAATAACATCTTTTCCCGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACATTAACCTCGTTACAACATT-TATCCTATGTATACAGATTGAGGTACAAAGGGGTGGGGTGAATAAGCTGCAAAGGATTC-AAATACACATGAGATAC-AGGGAGG--TAGTTGAGGAGGGGGGGATAATTCACAGAAACTAAGAACAAGTCTAACAATGGTGATCTCACCAGTCAATTGCTATGAACTGAGAAAGGAGCATTACAAGACGAAAGGGGGTGATGAGGCCGACAGCGTTACTTTGCGTGGTCCAGCAACTCCACCCACCTCCTGGTTTCCTACTGGCTTATTGGATAGTCGACGTTTATAGCGCTTGAGGACGGATGCCAGGTTCTCTTTTCCTTTAGGAAAGGCTACATCCCCTGCTGCAGTGCCCGTTCGTCCCTTTCGACAGGAAATTGCAGTCTCCACGTCTTTGATCATCTCTAAGAGCATTGCTGCAGTCGTGCATTTTCCTCGACCCTGTTTTGCTTGTGGCGGCAAGTTTCCATTTGAAATTGGAGGGGGGCTTGCCTTTTTGCTGGCGGCCAACCGGAATTTGAATGACAAAAACAATGGCTCGTCGGAGAACGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709467" ref_strand="+" ref_description="SGN-E709467 [FA52AE09]">
      <seq>cgcttttctcttccacaggaaacccggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttccccactgcggagaaggttgtgtttggaaagtagatctgattataagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcatagtagatctggcattttcaaagccccattctccgacgagccattgtttttgtcttcaaattccggctggccgccagcaaaaggcaagcccccctccaatttctaatggaaacttgccgccacaagcaaaacagggtcgaggaaaatgcacgactgcagcaatgctcttagagatgatcaaagacgtggagacagcaatttcctgtcgaaagggacgaacgggcactgcagcaggggatgtagcctttcctaaaggaaaagagaacctggcatccgtcctcaagcgctataaacgtcgattatccaataagccggtaggaaaccatgaggtggctggagtcgccggaccgcgcaaagtaacgctgtctgcctcatcaccccctttcgtcttgtaacgctcttttctcagttcataccaaattgactggtgagatcaccattgttagacttgttcttactttctgtgaattatcccccccctccccaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77306" stop="75525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77006" g_stop="76777" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76316" g_stop="75825" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="723" r_length="494" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E709467" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77006" e_stop="76777"/>
          <exon e_start="76316" e_stop="75825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAA-TGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTAT-CCCCCCCTCCCCAACTA</genome_strand>
        <mrna_strand>CGCTTTTCTCTTCC-ACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCATGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATACCAAATTGACTGGTGAGATCACCATTGTTAGACTTGTTCTTACTTTCTGTGAATTATCCCCCCCCTCCCCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575967" ref_strand="+" ref_description="SGN-E575967 [35673]">
      <seq>agatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtaggttgaccaacattggtgaatcacacttctcttccaacaggaaacctggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttcctcactgtggagaaggttgtgtttggaaagtagatctgattgtaagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcatagtagatctggcattttcgaagccccgttctcctacgagccattgtttttgtcttcaaattccggttggccgccagcaaaaggcaagcccccctccaatttcaaatggaaacttgccgccacaagcaaaacagggccgaggaaaatgcacgactgcagcaatgcttttagagatgatcaaagacgtggagacggcaatttcctgtcgaaagggacgaacgggcactgcagcaggggatgtagcctttcctaaaggaaaagagaacctggcatctgtcctcaagcgctataaacgtcgactatccaataagccagtaggaaaacaggaggtgggtggaattgctggaacaggcaaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77413" stop="75653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77113" g_stop="76777" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76316" g_stop="75953" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="701" r_length="364" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E575967" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77113" e_stop="76777"/>
          <exon e_start="76316" e_stop="75953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAA</genome_strand>
        <mrna_strand>AGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGGTTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCTGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCTCACTGTGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTGTAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTAGATCTGGCATTTTCGAAGCCCCGTTCTCCTACGAGCCATTGTTTTTGTCTTCAAATTCCGGTTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCAAATGGAAACTTGCCGCCACAAGCAAAACAGGGCCGAGGAAAATGCACGACTGCAGCAATGCTTTTAGAGATGATCAAAGACGTGGAGACGGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCTGTCCTCAAGCGCTATAAACGTCGACTATCCAATAAGCCAGTAGGAAAACAGGAGGTGGGTGGAATTGCTGGAACAGGCAAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728091" ref_strand="+" ref_description="SGN-E728091 [LA16CG02]">
      <seq>ctgcgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtagattgaccaacattggtgaatcacacttctcttccaacaggaaacccggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttccccactgcggagaaggttgtgtttggaaagtagatctgattataagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcatagtagatctggcattttcaaagccccattctccgacgagccattgtttttgtcttcaaattccggctggccgccagcaaaaggcaagcccccctccaatttctaatggaaacttgccgccacaagcaaaacagggtcgaggaaaatgcacgactgcagcaatgctcttagagatgatcaaagacgtggagacagcaatttcctgtcgaaagggacgaacgggcactgcagcaggggatgtagcctttcctaaaggaaaagagaacctggcatccgtcctcaagcgctataaacgtcgattatccaataagccggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77540" stop="75695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77240" g_stop="76777" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76316" g_stop="75995" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="786" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E728091" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77240" e_stop="76777"/>
          <exon e_start="76316" e_stop="75995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAG</genome_strand>
        <mrna_strand>CTGCGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590669" ref_strand="+" ref_description="SGN-E590669 [44269]">
      <seq>ggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggtgatcatggaactgtgcagagttcatctgctcaggagagtacatctatggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttctgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtaggttgaccaacattggtgaatcacacttctcttccaacaggaaacctggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttcctcactgtggagaaggttgtgtttggaaagtagatctgattgtaagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcatagtagatctggcattttcgaagccccgttctcctacgagccattgtttttgtcttcaaattccggttggccgccagcaaaaggcaagcccccctccaatttcaaatggaaacttgccgccacaagcaaaacagggccgaggaaaatgcacgactgcagcaatgctcttagagatgatcaaagacgtggagacggcaatttcctgtcgaaagggacgaacgggcactgcagcaggggatgtaagctttcctaaaggaaaagagaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77609" stop="75746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77309" g_stop="76777" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76316" g_stop="76046" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="804" r_length="271" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E590669" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77309" e_stop="76777"/>
          <exon e_start="76316" e_stop="76046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACC</genome_strand>
        <mrna_strand>GGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGTGATCATGGAACTGTGCAGAGTTCATCTGCTCAGGAGAGTACATCTATGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTCTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGGTTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCTGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCTCACTGTGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTGTAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGTAGATCTGGCATTTTCGAAGCCCCGTTCTCCTACGAGCCATTGTTTTTGTCTTCAAATTCCGGTTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCAAATGGAAACTTGCCGCCACAAGCAAAACAGGGCCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACGGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAAGCTTTCCTAAAGGAAAAGAGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268667" ref_strand="+" ref_description="SGN-E268667 [cLEM-9-A3]">
      <seq>gatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtagattgaccaacattggtgaatcacacttctcttccaacaggaaacccggttctgccccaaaacctgaagagatggattacaccaagttcttggtgatgtcagttccccactgcggagaaggttgtgtttggaaagtagatctgattataagcttcggtgtgtggtgcattcacagaattcttgagctttcacttatggaaagtaggccagagttgtggggcaaatatacctatgttctcaaccgtcttcagggcataggagatctggcattttcaaagccccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77409" stop="75981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77109" g_stop="76777" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76316" g_stop="76281" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="369" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E268667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77109" e_stop="76777"/>
          <exon e_start="76316" e_stop="76281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAGGTAAAGCCTCATATCCTATCTATCTTTTTCTTCATTCACAGAATTCTTGAAGTTCTATGTTTCTTTCAATAATTTTTTTTTGAGCATTGGAGAAATGAAGCATGCTTTTTGGTGTTACCACACAATCCTTCATGAAAACCCTCTTTAAAGCTTATATCACATCATTTAAGGTTTAAATAAACCGCATTTGTGTTAGATTCATTGTTGGACCTTGTAGCGTGCCAAAAAAGATATTGTAGTGACTATCCTGGTCCTTCCATTTTAAGGTGGCTAAACAAGTGCTAAAAGCATCAAAGACGCCACAAAACCGTAAGCTAGGGGTCATTTGTTTGAAATTTTCCTTTCTCGGAACAGCGGGAAAGAGTAATAGTTGAGTTGGTCTTGATGCTCAAGAAATGGCAATGTGTCAACCGTAGTGTGAGATTTATTATTCATCTGATGAATCATTTACCAACTTCAGGGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCT</genome_strand>
        <mrna_strand>GATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATAGGAGATCTGGCATTTTCAAAGCCCCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417361" ref_strand="+" ref_description="SGN-E417361 [STM-25-E22]">
      <seq>tggctcagccaactctaagaagtctacagcttgcctgatatctcagggcgctatgttcctcgccaagattctttagtctcagatgggagagctcaatggtacaattccatggggattcgaacaatctggtggtcgatctacgtacgaacaagcctatatgagtggttcgcttagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcgttctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggtgatcatggaactgtgcagagttcatctgctcaggagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttctgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtaggttgaccaacattggtgaatcacacttctcttccacaggnaaacctggttctgccccaaaacctgaagagatggattacaccaagtncttggtgatgtcagttcctcactgtggagaaaggttgtgtttggaaagtagatctgattgtagccttcggtggtgtggtgcattcacagaattcttgagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77878" stop="76539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77578" g_stop="76839" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E417361" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77578" e_stop="76839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCAT-GGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGG-AAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAG-AAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGT-GTGTGGTGCATTCACAGAATTCTTGAGCTTT</genome_strand>
        <mrna_strand>TGGCTCAGCCAACTCTAAGAAGT-CTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTTTAGTCTCAGATGGGAGAGCTCAATGGTACAATTCCATGGGGATTCGAACAATCTGGTGGTCGATCTACGTACGAACAAGCCTATATGAGTGGTTCGCTTAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCGTTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGTGATCATGGAACTGTGCAGAGTTCATCTGCTCAGGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTCTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGGTTGACCAACATTGGTGAATCACACTTCTCTTCC-ACAGGNAAACCTGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTNCTTGGTGATGTCAGTTCCTCACTGTGGAGAAAGGTTGTGTTTGGAAAGTAGATCTGATTGTAGCCTTCGGTGGTGTGGTGCATTCACAGAATTCTTGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267830" ref_strand="+" ref_description="SGN-E267830 [cLEI-12-M3]">
      <seq>ggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtagattgaccaacattggtgaatcacacttctcttccaacaggaaacccggttctgccccaaaacctgaagagatggattacaccaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77751" stop="76638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77451" g_stop="76938" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E267830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77451" e_stop="76938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCT</genome_strand>
        <mrna_strand>GGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328147" ref_strand="+" ref_description="SGN-E328147 [cTOC-21-C11]">
      <seq>caccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggttcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactanggagataagtagattgaccaacattggtgaatcacacttctcttccacagggaaaccggttctgcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77984" stop="76669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77684" g_stop="76969" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E328147" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77684" e_stop="76969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCA</genome_strand>
        <mrna_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTANGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCC-ACAGGGAAACCGGTTCTGCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327519" ref_strand="+" ref_description="SGN-E327519 [cTOC-20-C7]">
      <seq>caccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggttcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttaggcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctctatgaagctgaaactagggagataagtagattgaccaacattggtgaatcacacttctcttccacaggaaaaccggttctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77984" stop="76671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77684" g_stop="76971" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E327519" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77684" e_stop="76971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCC</genome_strand>
        <mrna_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCC-ACAGGAAAACCGGTTCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327470" ref_strand="+" ref_description="SGN-E327470 [cTOC-19-P1]">
      <seq>caccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggttcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggttgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaacttttgaaactggaaggatctgagtggttatttangcaagatgatggggctgatgangatcttatangtcggattgctgcaagagagaaatttctctatgaagctgaaactangggagatagtagattgaccaacattggtgaatcacacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77984" stop="76697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77684" g_stop="76997" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E327470" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77684" e_stop="76997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTA-GGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTC</genome_strand>
        <mrna_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTANGCAAGATGATGGGGCTGATGANGATCTTATANGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTANGGGAGAT-AGTAGATTGACCAACATTGGTGAATCACACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328880" ref_strand="+" ref_description="SGN-E328880 [cTOC-24-I14]">
      <seq>caccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggctcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggcaagccagatgttggtagcggcgatcatggaactgtgctgagttcctctgctcaagagagtacatctacggctgacttggaagctaagctgcttcagtctttcagaagttgtattgtgaaactttttgaactggaaggatctgagtggttatttatgcaagatgatggggctgatgaggatcttataggtcggattgctgcaagagagaaatttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77984" stop="76755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77684" g_stop="77055" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E328880" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77684" e_stop="77055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCT</genome_strand>
        <mrna_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGCTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGCAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGCTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTTGAACTGGAAGGATCTGAGTGGTTATTTATGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446023" ref_strand="+" ref_description="SGN-E446023 [cSTA-19-N17]">
      <seq>gctcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctttagtctcagatgggagagctcaatggtacaattccatgggattcgaacaatctggtggtcgatctacgtacgaacaagcctatatgagtggttcgcttatggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcgttctccttgcagtacagctccaattcacggactggatccctgtggtctagacagccttttgagcaatttggtgtagctggtaagccagatgttggtagcggtgatcatggaactgtgcagagttcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77876" stop="76922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77576" g_stop="77222" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E446023" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77576" e_stop="77222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGC</genome_strand>
        <mrna_strand>GCTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTTTAGTCTCAGATGGGAGAGCTCAATGGTACAATTCCATGGGATTCGAACAATCTGGTGGTCGATCTACGTACGAACAAGCCTATATGAGTGGTTCGCTTATGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCGTTCTCCTTGCAGTACAGCTCCAATTCACGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGTGATCATGGAACTGTGCAGAGTTCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326599" ref_strand="+" ref_description="SGN-E326599 [cTOC-17-A11]">
      <seq>caccacctggttttggaaatgtccctgtaggccgaaataattcgatgcagcccactaacactacttctgtcgaccatagctctactgaaactgctgaaagcgtggctggttcagccaactctaagaagtactacagcttgcctgatatctcagggcgctatgttcctcgccaagattctatagtgtcagatgcgagagctcaatggtacaattccatgggattcggacaatctggtggtcgatctacatacgaacaagcctatatgagtggttcactaagggcaggtggtcctcagaggtatgaacattctcctaaagtctgcagagatgcattctccttgcagtacagctccaattcagggactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="77984" stop="77017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77684" g_stop="77317" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E326599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77684" e_stop="77317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGA</genome_strand>
        <mrna_strand>CACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451827" ref_strand="+" ref_description="SGN-E451827 [cSTS-14-G18]">
      <seq>ccaggataccagagtctctgatcaactcgaatatgtactctcccaagcagcaatttgcgtcaagcattgtggactctgcttatagagtcccaaaggagccttcttcgacatcttctatgtggtctaaccatatgaaattagtaggtgcgtacgtgcaaagttccaacagcaacatacttgacccaggggagaggcgctattctagtatgcggattccagcgacttctgctggctatgatcagcagcctgccactgtgcatggatatcaaattactgcttacctaaatcaacttgcgaaagaaagaggatctgattatttaaatgggcaactggagtcaccatctcctcgttctgtatcatcactgacgtcaaactatgccgaaccattggctcgtgcttcggggcaaaaaccccagagtggagtcagtagtcagccacccttggtttttggaaatgtccctgtagcccgaaataattccatgcagcccaataacacctctatcgaccttagctctactgaaactgctgaaagcgtggctggctcagccaactctaagaagtactacagcttgcctgatatctcanggcgctatgttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="78419" stop="77217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78119" g_stop="77517" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E451827" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78119" e_stop="77517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGG-TTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTC</genome_strand>
        <mrna_strand>CCAGGATACCAGAGTCTCTGATCAACTCGAATATGTACTCTCCCAAGCAGCAATTTGCGTCAAGCATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCTTCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCGTACGTGCAAAGTTCCAACAGCAACATACTTGACCCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAAATTACTGCTTACCTAAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCCGAACCATTGGCTCGTGCTTCGGGGCAAAAACCCCAGAGTGGAGTCAGTAGTC-AGCCACCCTTGGTTTTTGGAAATGTCCCTGTAGCCCGAAATAATTCCATGCAGCCCAATAACAC--C-TCTATCGACCTTAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGCTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCANGGCGCTATGTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459479" ref_strand="+" ref_description="SGN-E459479 [cPRO-28-A13]">
      <seq>agaacactcaatcttttatttctgatggtccggggtcatacaaaagtctaagtggaaaactagaggacatggggagtggtgcgggaagtctatcaagattagcaggtcttggtcgcgcagctaggaggcagttaacagaagctctaaatgagttttgggggcagctttttgattaccatggcatggccacagcagaagcaaagtccaagaaactggatataatacttggtctggattcaaagatgaatccaaaacctgccccggcatcattaaaagtggaaagcagtgcgtatataccatcggggagtgcaaggataccagagtctctgatcaactcgaatatgtactctcccaagcagcaatttgcgtcaagcattgtggactctgcttatagagtcccaaaggagccttcttcgacatcttctatgtggtctaaccatatgaaattagtaggtgcgtacgtgcaaagttccaacagcaacatacttgacccaggggagaggcgctattctagtatgcggattccagcgacttctgctggctatgatcagcagcctgccactgtgcatggatatcaaattactgcttacctaaatcaacttgcgaaagaaagaggatctgattatttaaatgggcaactggagtcaccatctcctcgttctgtatcatcactgacgtncaactatgccgaaccattggctcgtgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="78728" stop="77420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78428" g_stop="77720" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E459479" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78428" e_stop="77720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTC</genome_strand>
        <mrna_strand>AGAACACTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACATGGGGAGTGGTGCGGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGCGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCCACAGCAGAAGCAAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCGGCATCATTAAAAGTGGAAAGCAGTGCGTATATACCATCGGGGAGTGCAAGGATACCAGAGTCTCTGATCAACTCGAATATGTACTCTCCCAAGCAGCAATTTGCGTCAAGCATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCTTCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCGTACGTGCAAAGTTCCAACAGCAACATACTTGACCCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAAATTACTGCTTACCTAAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTNCAACTATGCCGAACCATTGGCTCGTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486961" ref_strand="+" ref_description="SGN-E486961 [cSTE-23-F2]">
      <seq>cagggatgatggagattcgtgggaggagcctgaagaggcaatcaaaggagtatctgagaacactcaatcttttatttctgatggtccggggtcatacaaaagtctaagtggaaaactagaggacacggggagtggtatgggaagtctatcaagattagcaggtcttggtcgcgcagctaggaggcagttaacagaagctctaaatgagttttgggggcagctttttgattaccatggcatggccacagcagaagcaaagtccaagaaactggatataatacttggtctggattcaaagatgaatccaaaacctgctcctgcatcattaaaagtggaaagcagtgcgtatattccatcggggagtgcaaggataccagagtctctgatcaactcgaatatgtactctcccaagcagcaatttgcgtcaagcattgtggactctgcttatagagtcccaaaggagccatcttcgacatcttctatgtggtctaaccatatgaaattagtaggtgcgtacgtgcaaagttccaacagcaacgtacttgacccaggggagaggcgctattctagtatgcggattccagcgacttctgctggctatgatcagcagcctgccactgtgcatggatatcaaattactgcttaccttnatcaacttgcgaaagaagaggatctgattattaaatgggcaactggagtcaccatctcctcgntctgtatcatcactgacgtcaaactatgccgaaacattggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="78784" stop="77427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78484" g_stop="77727" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E486961" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78484" e_stop="77727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTC</genome_strand>
        <mrna_strand>CAGGGATGATGGAGATTCGTGGGAGGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACACTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTATGGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGCGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCCACAGCAGAAGCAAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCTCCTGCATCATTAAAAGTGGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGTCTCTGATCAACTCGAATATGTACTCTCCCAAGCAGCAATTTGCGTCAAGCATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCGTACGTGCAAAGTTCCAACAGCAACGTACTTGACCCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAAATTACTGCTTACCTTNATCAACTTGCGAAAG-AAGAGGATCTGATTA-TTAAATGGGCAACTGGAGTCACCATCTCCTCGNTCTGTATCATCACTGACGTCAAACTATGCCGAAACATTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427443" ref_strand="+" ref_description="SGN-E427443 [STM-48-B9]">
      <seq>cagggatgatggagattcgtgggaggagcctgaagaggcaatcaaaggagtatctgagaacactcaatcttttatttctgatggtccggggtcatacaaaagtctaagtggaaaactagaggacacggggagtggtatgggaagtctatcaagattagcaggtcttggtcgcgcagctaggaggcagttaacagaagctctaaatgagttttgggggcagctttttgattaccatggcatggccacagcagaagcaaagtccaagaaactggatataatacttggtctggattcaaagatgaatccaaaacctgctcctgcatcattaaaagtggaaagcagtgcgtatattccatcgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0130H12-Hxllz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0130H12.3" temp_strand="-" temp_description="C09SLe0130H12.3  EF576814.2 htgs_phase:2 submitted_to_sgn_as:gb|EF576814| upload_account_name:spain (1 - 81692)">
        <position start="78784" stop="77823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78484" g_stop="78123" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0130H12.3" gen_strand="-" ref_id="SGN-E427443" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0130H12.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78484" e_stop="78123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGA</genome_strand>
        <mrna_strand>CAGGGATGATGGAGATTCGTGGGAGGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACACTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTATGGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGCGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCCACAGCAGAAGCAAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCTCCTGCATCATTAAAAGTGGAAAGCAGTGCGTATATTCCATCGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>525</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4792" PGL_stop="7645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4792" e_stop="4950"/>
            <exon e_start="6356" e_stop="6652"/>
            <exon e_start="7366" e_stop="7645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.475" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4792" e_stop="4950" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.475">
            <gDNA_intron_boundary i_start="4951" i_stop="6355" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6356" e_stop="6652" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6653" i_stop="7365" i_length="713"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7366" e_stop="7645" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4792" stop="4950"/>
              <exon start="6356" stop="6652"/>
              <exon start="7366" stop="7645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCTAACACAATGCACATTATCTGGGATGGTTCTCATAAATGGAAGGGCAGAATCTATCCACTCATACAAGAGAATTACAGGTTTTGTTGCCCAAGATGATATAGTCCACGGAAACCTCACTGTAGAAGAGAACCTTCGATTTAATGCAAGATGCAG : ACTAGCTGCAGACTTGCCAAAGGCTGATAAGGTTCTTGTAGTCGAGAGAGTTATTGAATCATTGGGTCTTCAGGCAGTTAGAGATTCACTGGTTGGGACTGTAGAGAAGCGTGGAATTTCTGGTGGCCAGAGGAAACGAGTGAACGTGGGGATGGAAATGGTCATGGAACCTTCACTGCTAATCTTGGATGAACCTACATCTGGTTTAGACAGCTCATCCTCAAACTTACTTCTTAAAGCTCTTAGACGTGAAGCTCTTGAAGGTGTAAACATTTGCATGGTTCTTCACCAGCCAAG : CTATACCTTGTACAAGATGTTCGATGACTTGGTACTTCTAGCCAAAGGTGGTCTTGTTGCATATCACGGCCCTGTGAAGAAAGCAGAAGAATACTTTGCAAATCTGGGAATCGCAGTACCAGATCGTGTAAATCCTCCTGACCATTTCATTGACGTCCTTGAGGGTATGGTCAAACCAGGTGGAGGTGTGACCGTGGAACAACTTCCTGTCCGATGGATGCTTCATAATGGTTACCCTGTACCCCCAGATATGATGCAATTGTGCGATCAGATTGCAATG</gDNA_template>
            <first_frame> Q  A  N  T  M  H  I  I  W  D  G  S  H  K  W  K  G  R  I  Y  P  L  I  Q  E  N  Y  R  F  C  C  P  R  *  Y  S  P  R  K  P  H  C  R  R  E  P  S  I  *  C  K  M  Q  :  T  S  C  R  L  A  K  G  *  *  G  S  C  S  R  E  S  Y  *  I  I  G  S  S  G  S  *  R  F  T  G  W  D  C  R  E  A  W  N  F  W  W  P  E  E  T  S  E  R  G  D  G  N  G  H  G  T  F  T  A  N  L  G  *  T  Y  I  W  F  R  Q  L  I  L  K  L  T  S  *  S  S  *  T  *  S  S  *  R  C  K  H  L  H  G  S  S  P  A  K  :  L  Y  L  V  Q  D  V  R  *  L  G  T  S  S  Q  R  W  S  C  C  I  S  R  P  C  E  E  S  R  R  I  L  C  K  S  G  N  R  S  T  R  S  C  K  S  S  *  P  F  H  *  R  P  *  G  Y  G  Q  T  R  W  R  C  D  R  G  T  T  S  C  P  M  D  A  S  *  W  L  P  C  T  P  R  Y  D  A  I  V  R  S  D  C  N  </first_frame>
            <second_frame>  K  L  T  Q  C  T  L  S  G  M  V  L  I  N  G  R  A  E  S  I  H  S  Y  K  R  I  T  G  F  V  A  Q  D  D  I  V  H  G  N  L  T  V  E  E  N  L  R  F  N  A  R  C  R :   L  A  A  D  L  P  K  A  D  K  V  L  V  V  E  R  V  I  E  S  L  G  L  Q  A  V  R  D  S  L  V  G  T  V  E  K  R  G  I  S  G  G  Q  R  K  R  V  N  V  G  M  E  M  V  M  E  P  S  L  L  I  L  D  E  P  T  S  G  L  D  S  S  S  S  N  L  L  L  K  A  L  R  R  E  A  L  E  G  V  N  I  C  M  V  L  H  Q  P  S :   Y  T  L  Y  K  M  F  D  D  L  V  L  L  A  K  G  G  L  V  A  Y  H  G  P  V  K  K  A  E  E  Y  F  A  N  L  G  I  A  V  P  D  R  V  N  P  P  D  H  F  I  D  V  L  E  G  M  V  K  P  G  G  G  V  T  V  E  Q  L  P  V  R  W  M  L  H  N  G  Y  P  V  P  P  D  M  M  Q  L  C  D  Q  I  A  M </second_frame>
            <third_frame>   S  *  H  N  A  H  Y  L  G  W  F  S  *  M  E  G  Q  N  L  S  T  H  T  R  E  L  Q  V  L  L  P  K  M  I  *  S  T  E  T  S  L  *  K  R  T  F  D  L  M  Q  D  A   : D  *  L  Q  T  C  Q  R  L  I  R  F  L  *  S  R  E  L  L  N  H  W  V  F  R  Q  L  E  I  H  W  L  G  L  *  R  S  V  E  F  L  V  A  R  G  N  E  *  T  W  G  W  K  W  S  W  N  L  H  C  *  S  W  M  N  L  H  L  V  *  T  A  H  P  Q  T  Y  F  L  K  L  L  D  V  K  L  L  K  V  *  T  F  A  W  F  F  T  S  Q   : A  I  P  C  T  R  C  S  M  T  W  Y  F  *  P  K  V  V  L  L  H  I  T  A  L  *  R  K  Q  K  N  T  L  Q  I  W  E  S  Q  Y  Q  I  V  *  I  L  L  T  I  S  L  T  S  L  R  V  W  S  N  Q  V  E  V  *  P  W  N  N  F  L  S  D  G  C  F  I  M  V  T  L  Y  P  Q  I  *  C  N  C  A  I  R  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4793" stop="4950"/>
                    <exon start="6356" stop="6652"/>
                    <exon start="7366" stop="7645"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTQCTLSGMVLINGRAESIHSYKRITGFVAQDDIVHGNLTVEENLRFNARCRLAADLPKADKVLVVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTSGLDSSSSNLLLKALRREALEGVNICMVLHQPSYTLYKMFDDLVLLAKGGLVAYHGPVKKAEEYFANLGIAVPDRVNPPDHFIDVLEGMVKPGGGVTVEQLPVRWMLHNGYPVPPDMMQLCDQIAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12079" PGL_stop="23909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16004" e_stop="16024"/>
            <exon e_start="16300" e_stop="16354"/>
            <exon e_start="17579" e_stop="17677"/>
            <exon e_start="17865" e_stop="17908"/>
            <exon e_start="19472" e_stop="19559"/>
            <exon e_start="19655" e_stop="20442"/>
            <exon e_start="21049" e_stop="21297"/>
            <exon e_start="21420" e_stop="21476"/>
            <exon e_start="22255" e_stop="22707"/>
            <exon e_start="23895" e_stop="23909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.975" e_score="0.571"/>
          <exon-intron don_prob="0.953" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="0.957"/>
          <exon-intron don_prob="0.835" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="16004" e_stop="16024" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.975">
            <gDNA_intron_boundary i_start="16025" i_stop="16299" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16354" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.969">
            <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17579" e_stop="17677" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17865" e_stop="17908" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17909" i_stop="19471" i_length="1563"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19472" e_stop="19559" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.965">
            <gDNA_intron_boundary i_start="19560" i_stop="19654" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="19655" e_stop="20442" e_length="788"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="20443" i_stop="21048" i_length="606"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21049" e_stop="21297" e_length="249"/>
          </exon>
          <intron i_serial="7" don_prob="0.835" acc_prob="0.957">
            <gDNA_intron_boundary i_start="21298" i_stop="21419" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21420" e_stop="21476" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.888">
            <gDNA_intron_boundary i_start="21477" i_stop="22254" i_length="778"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22255" e_stop="22707" e_length="453"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="22708" i_stop="23894" i_length="1187"/>
          </intron>
          <exon e_serial="10" e_score="0.533">
            <gDNA_exon_boundary e_start="23895" e_stop="23909" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16004" stop="16024"/>
              <exon start="16300" stop="16354"/>
              <exon start="17579" stop="17677"/>
              <exon start="17865" stop="17908"/>
              <exon start="19472" stop="19559"/>
              <exon start="19655" stop="19888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19841" stop="20442"/>
              <exon start="21049" stop="21281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20423" stop="20442"/>
              <exon start="21049" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21064" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21272" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22516" stop="22707"/>
              <exon start="23895" stop="23909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACACCTAAATGCTTTTACAG : AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG : AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG : GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT : GTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAG : ATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCAGCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTACTGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCTGAAATAAGCCCTCCAGTCACTTCTGAAGCAATAAACATCGACACTCCTGTCACTCAAAAGCGTCTGCGTAAGCCTACACGAAGGTATATTGATGAATCGTCAAACCTTAATGCTAAGCGTCGCAAGAAAAGAGCAGAGGTTTCTACTAGTGGTGCAGAATCAAAGAATAAGCTTCTCAAAGTCAGATGTCAGAAGAAACCTCGTGCAGAGTCTATGGAAATGGTATTGTTTTCTGAAGAGTCTTCTTACGAAGCTATTCAAGTGCCTTTTGCCTCTCTCGTGAACGAAGAATGTGATGATTGGGATGCATCTGATGCGATACAG : GTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG : GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG : GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGAC : CCTAAATAGGGAAAA</gDNA_template>
            <first_frame> Y  T  *  M  L  L  Q  :  N  S  A  Y  R  S  G  F  A  S  L  G  V  W  F  D  E  S   : E  T  R  D  D  H  A  S  I  S  G  V  L  C  F  D  E  K  R  V  L  K  G  M  E  R  K  G  A  L  Y  N  I   : G  S  S  I  A  S  K  R  E  N  E  I  N  Q  D  :  V  L  D  L  K  R  S  Q  F  E  A  G  K  I  Q  A  Q  N  D  L  S  T  P  C  E  D  Y  L  L   : D  I  E  F  A  E  S  I  T  N  L  D  Y  G  S  S  R  G  L  L  D  P  I  L  E  S  Q  I  P  L  S  S  C  D  G  T  D  T  C  G  M  P  Y  S  A  G  L  V  V  Q  E  S  Q  S  Q  N  A  M  F  G  L  T  N  S  E  L  H  D  L  S  R  D  K  C  E  S  Q  M  L  V  E  Y  N  A  V  K  F  P  T  A  F  N  P  G  D  I  S  N  V  D  D  V  A  G  F  F  A  E  A  A  A  S  E  K  M  N  D  S  M  I  D  H  S  A  L  T  S  N  G  I  S  F  M  S  T  A  T  Q  N  E  G  Q  D  V  N  C  E  S  F  D  M  H  E  S  S  E  I  S  P  P  V  T  S  E  A  I  N  I  D  T  P  V  T  Q  K  R  L  R  K  P  T  R  R  Y  I  D  E  S  S  N  L  N  A  K  R  R  K  K  R  A  E  V  S  T  S  G  A  E  S  K  N  K  L  L  K  V  R  C  Q  K  K  P  R  A  E  S  M  E  M  V  L  F  S  E  E  S  S  Y  E  A  I  Q  V  P  F  A  S  L  V  N  E  E  C  D  D  W  D  A  S  D  A  I  Q  :  V  F  K  P  H  K  E  E  P  P  H  K  E  A  T  T  V  V  N  H  K  D  D  D  V  T  P  K  K  L  V  Q  D  G  V  R  R  K  H  H  R  L  W  T  V  S  E  V  R  K  L  I  D  G  V  A  Q  Y  G  V  G  R  W  S  H  I  K  K  L  Y  F  S  S  S  V  H  R  T  P  V  D  L  K  :  D  K  W  R  N  L  L  K  A  T  Y  L  Q  K  Q  S  K  S  T  :  E  K  G  K  H  N  L  S  W  R  P  L  P  K  S  V  L  H  R  V  S  E  L  A  N  M  H  P  Y  P  R  N  R  R  C  K  S  S  R  S  P  C  A  S  S  S  P  E  H  S  N  S  S  N  T  P  *  R  P  H  L  *  Y  S  S  P  M  H  S  Y  R  S  N  I  W  *  *  P  D  F  Y  V  Q  I  L  A  F  S  S  L  I  P  T  R  C  I  V  R  V  *  S  S  F  I  S  S  E  K  K  V  L  Y  N  F  S  L  P  L  E  M  Q  S  S  H  L  *  T  F  F  F  V  F  P  I  D  T  S  A  Y  V  S  A  F  C  V  Y  E  V  V  C  D  :  P  K  *  G  K </first_frame>
            <second_frame>  T  P  K  C  F  Y  R :   I  Q  H  I  E  V  V  L  L  L  *  G  S  G  L  M  N  Q  :  K  P  V  M  I  M  L  L  S  L  V  S  C  V  L  M  R  R  G  Y  *  R  A  W  K  G  K  V  L  C  T  I  *  :  V  P  V  L  H  L  K  E  K  M  K  L  T  K  M :   S  L  I  *  S  E  V  N  L  R  L  E  K  F  K  H  K  M  I  F  P  L  H  V  K  I  I  C  *  :  I  L  N  L  L  K  A  S  Q  I  W  I  M  V  Q  V  E  D  C  W  T  L  Y  *  K  V  R  F  H  Y  L  V  V  M  E  L  T  P  V  E  C  H  T  L  R  D  *  L  C  K  N  L  K  V  R  M  L  C  L  A  L  P  I  Q  S  C  M  T  F  L  V  T  S  V  K  V  R  C  *  L  S  T  M  L  *  N  S  L  L  L  S  I  Q  E  I  S  A  M  W  M  M  W  Q  A  S  L  L  K  L  Q  L  L  R  R  *  M  T  A  *  L  T  I  L  R  *  H  L  T  E  F  L  L  C  L  L  L  H  K  M  R  G  K  M  *  T  V  K  A  L  I  C  M  N  P  L  K  *  A  L  Q  S  L  L  K  Q  *  T  S  T  L  L  S  L  K  S  V  C  V  S  L  H  E  G  I  L  M  N  R  Q  T  L  M  L  S  V  A  R  K  E  Q  R  F  L  L  V  V  Q  N  Q  R  I  S  F  S  K  S  D  V  R  R  N  L  V  Q  S  L  W  K  W  Y  C  F  L  K  S  L  L  T  K  L  F  K  C  L  L  P  L  S  *  T  K  N  V  M  I  G  M  H  L  M  R  Y  R :   F  S  N  L  T  R  R  S  L  L  I  R  R  L  L  Q  L  *  I  I  K  M  M  M  L  H  Q  R  S  W  Y  K  M  V  C  G  G  N  I  T  G  S  G  L  F  Q  R  L  E  S  *  L  M  E  L  P  N  M  E  L  E  D  G  V  T  *  R  S  S  I  S  H  H  L  F  I  E  H  L  W  I  S  R :   I  N  G  G  I  F  L  K  Q  L  I  Y  R  N  K  A  N  Q  R :   K  R  V  N  I  T  C  L  G  D  L  C  Q  S  L  S  C  I  E  S  V  N  W  R  T  C  I  H  I  Q  E  T  G  G  A  R  V  P  V  L  H  V  P  H  L  L  L  S  I  L  T  V  L  T  P  R  D  D  P  T  C  D  I  P  L  L  C  I  V  T  G  V  T  S  G  N  N  P  I  F  T  F  K  Y  W  L  L  A  L  L  Y  Q  L  A  A  *  F  V  Y  R  A  A  S  F  Q  V  K  R  R  F  C  I  I  F  R  Y  L  *  K  C  N  R  H  I  C  K  L  F  F  L  Y  F  Q  L  I  Q  V  L  M  F  Q  H  F  V  Y  M  K  *  F  V  T :   L  N  R  E   </second_frame>
            <third_frame>   H  L  N  A  F  T   : E  F  S  I  *  K  W  F  C  F  S  R  G  L  V  *  *  I  R :   N  P  *  *  S  C  F  Y  L  W  C  L  V  F  *  *  E  E  G  I  K  G  H  G  K  E  R  C  F  V  Q  Y  R :   F  Q  Y  C  I  *  K  R  K  *  N  *  P  R   : C  P  *  S  K  A  K  S  I  *  G  W  K  N  S  S  T  K  *  S  F  H  S  M  *  R  L  S  V  R :   Y  *  I  C  *  K  H  H  K  S  G  L  W  F  K  *  R  I  A  G  P  Y  I  R  K  S  D  S  I  I  *  L  *  W  N  *  H  L  W  N  A  I  L  C  G  I  S  C  A  R  I  S  K  S  E  C  Y  V  W  P  Y  Q  F  R  V  A  *  P  F  S  *  Q  V  *  K  S  D  A  S  *  V  Q  C  C  E  I  P  Y  C  F  Q  S  R  R  Y  Q  Q  C  G  *  C  G  R  L  L  C  *  S  C  S  F  *  E  D  E  *  Q  H  D  *  P  F  C  A  N  I  *  R  N  F  F  Y  V  Y  C  Y  T  K  *  G  A  R  C  K  L  *  K  L  *  Y  A  *  I  L  *  N  K  P  S  S  H  F  *  S  N  K  H  R  H  S  C  H  S  K  A  S  A  *  A  Y  T  K  V  Y  *  *  I  V  K  P  *  C  *  A  S  Q  E  K  S  R  G  F  Y  *  W  C  R  I  K  E  *  A  S  Q  S  Q  M  S  E  E  T  S  C  R  V  Y  G  N  G  I  V  F  *  R  V  F  L  R  S  Y  S  S  A  F  C  L  S  R  E  R  R  M  *  *  L  G  C  I  *  C  D  T   : G  F  Q  T  S  Q  G  G  A  S  S  *  G  G  Y  Y  S  C  E  S  *  R  *  *  C  Y  T  K  E  V  G  T  R  W  C  A  E  E  T  S  Q  A  L  D  C  F  R  G  *  K  V  D  *  W  S  C  P  I  W  S  W  K  M  E  S  H  K  E  A  L  F  L  I  I  C  S  *  N  T  C  G  S  Q   : G  *  M  E  E  S  S  *  S  N  L  S  T  E  T  K  Q  I  N   : G  K  G  *  T  *  P  V  L  A  T  F  A  K  V  C  P  A  S  S  Q  *  T  G  E  H  A  S  I  S  K  K  P  E  V  Q  E  F  P  F  S  M  C  L  I  F  S  *  A  F  *  Q  F  *  H  P  V  T  T  P  P  V  I  F  L  S  Y  A  *  L  Q  E  *  H  L  V  I  T  R  F  L  R  S  N  I  G  F  *  L  S  Y  T  N  S  L  H  S  S  C  I  E  Q  L  H  F  K  *  K  E  G  S  V  *  F  F  V  T  S  R  N  A  I  V  T  S  V  N  F  F  F  C  I  S  N  *  Y  K  C  L  C  F  S  I  L  C  I  *  S  S  L  *   : P  *  I  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16013" stop="16024"/>
                    <exon start="16300" stop="16354"/>
                    <exon start="17579" stop="17677"/>
                    <exon start="17865" stop="17908"/>
                    <exon start="19472" stop="19559"/>
                    <exon start="19655" stop="20442"/>
                    <exon start="21049" stop="21297"/>
                    <exon start="21420" stop="21476"/>
                    <exon start="22255" stop="22425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLQNSAYRSGFASLGVWFDESETRDDHASISGVLCFDEKRVLKGMERKGALYNIGSSIASKRENEINQDVLDLKRSQFEAGKIQAQNDLSTPCEDYLLDIEFAESITNLDYGSSRGLLDPILESQIPLSSCDGTDTCGMPYSAGLVVQESQSQNAMFGLTNSELHDLSRDKCESQMLVEYNAVKFPTAFNPGDISNVDDVAGFFAEAAASEKMNDSMIDHSALTSNGISFMSTATQNEGQDVNCESFDMHESSEISPPVTSEAINIDTPVTQKRLRKPTRRYIDESSNLNAKRRKKRAEVSTSGAESKNKLLKVRCQKKPRAESMEMVLFSEESSYEAIQVPFASLVNEECDDWDASDAIQVFKPHKEEPPHKEATTVVNHKDDDVTPKKLVQDGVRRKHHRLWTVSEVRKLIDGVAQYGVGRWSHIKKLYFSSSVHRTPVDLKDKWRNLLKATYLQKQSKSTEKGKHNLSWRPLPKSVLHRVSELANMHPYPRNRRCKSSRSPCASSSPEHSNSSNTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12122" e_stop="12150"/>
            <exon e_start="16300" e_stop="16354"/>
            <exon e_start="17579" e_stop="17677"/>
            <exon e_start="17865" e_stop="17908"/>
            <exon e_start="19472" e_stop="19559"/>
            <exon e_start="19655" e_stop="20442"/>
            <exon e_start="21049" e_stop="21297"/>
            <exon e_start="21420" e_stop="21476"/>
            <exon e_start="22255" e_stop="22707"/>
            <exon e_start="23895" e_stop="23909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="0.957"/>
          <exon-intron don_prob="0.835" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12122" e_stop="12150" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.975">
            <gDNA_intron_boundary i_start="12151" i_stop="16299" i_length="4149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16354" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.969">
            <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17579" e_stop="17677" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17865" e_stop="17908" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17909" i_stop="19471" i_length="1563"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19472" e_stop="19559" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.965">
            <gDNA_intron_boundary i_start="19560" i_stop="19654" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="19655" e_stop="20442" e_length="788"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="20443" i_stop="21048" i_length="606"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21049" e_stop="21297" e_length="249"/>
          </exon>
          <intron i_serial="7" don_prob="0.835" acc_prob="0.957">
            <gDNA_intron_boundary i_start="21298" i_stop="21419" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21420" e_stop="21476" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.888">
            <gDNA_intron_boundary i_start="21477" i_stop="22254" i_length="778"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22255" e_stop="22707" e_length="453"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="22708" i_stop="23894" i_length="1187"/>
          </intron>
          <exon e_serial="10" e_score="0.533">
            <gDNA_exon_boundary e_start="23895" e_stop="23909" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12122" stop="12150"/>
              <exon start="16300" stop="16354"/>
              <exon start="17579" stop="17677"/>
              <exon start="17865" stop="17908"/>
              <exon start="19472" stop="19559"/>
              <exon start="19655" stop="20179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19841" stop="20442"/>
              <exon start="21049" stop="21281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20423" stop="20442"/>
              <exon start="21049" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21064" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21272" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22516" stop="22707"/>
              <exon start="23895" stop="23909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATCACTACAATTGAATCATGAATCAG : AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG : AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG : GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT : GTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAG : ATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCAGCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTACTGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCTGAAATAAGCCCTCCAGTCACTTCTGAAGCAATAAACATCGACACTCCTGTCACTCAAAAGCGTCTGCGTAAGCCTACACGAAGGTATATTGATGAATCGTCAAACCTTAATGCTAAGCGTCGCAAGAAAAGAGCAGAGGTTTCTACTAGTGGTGCAGAATCAAAGAATAAGCTTCTCAAAGTCAGATGTCAGAAGAAACCTCGTGCAGAGTCTATGGAAATGGTATTGTTTTCTGAAGAGTCTTCTTACGAAGCTATTCAAGTGCCTTTTGCCTCTCTCGTGAACGAAGAATGTGATGATTGGGATGCATCTGATGCGATACAG : GTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG : GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG : GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCAGCATTTTGTGTATATGAAGTAGTTTGTGAC : CCTAAATAGGGAAAA</gDNA_template>
            <first_frame> S  I  T  T  I  E  S  *  I  R :   I  Q  H  I  E  V  V  L  L  L  *  G  S  G  L  M  N  Q  :  K  P  V  M  I  M  L  L  S  L  V  S  C  V  L  M  R  R  G  Y  *  R  A  W  K  G  K  V  L  C  T  I  *  :  V  P  V  L  H  L  K  E  K  M  K  L  T  K  M :   S  L  I  *  S  E  V  N  L  R  L  E  K  F  K  H  K  M  I  F  P  L  H  V  K  I  I  C  *  :  I  L  N  L  L  K  A  S  Q  I  W  I  M  V  Q  V  E  D  C  W  T  L  Y  *  K  V  R  F  H  Y  L  V  V  M  E  L  T  P  V  E  C  H  T  L  R  D  *  L  C  K  N  L  K  V  R  M  L  C  L  A  L  P  I  Q  S  C  M  T  F  L  V  T  S  V  K  V  R  C  *  L  S  T  M  L  *  N  S  L  L  L  S  I  Q  E  I  S  A  M  W  M  M  W  Q  A  S  L  L  K  L  Q  L  L  R  R  *  M  T  A  *  L  T  I  L  R  *  H  L  T  E  F  L  L  C  L  L  L  H  K  M  R  G  K  M  *  T  V  K  A  L  I  C  M  N  P  L  K  *  A  L  Q  S  L  L  K  Q  *  T  S  T  L  L  S  L  K  S  V  C  V  S  L  H  E  G  I  L  M  N  R  Q  T  L  M  L  S  V  A  R  K  E  Q  R  F  L  L  V  V  Q  N  Q  R  I  S  F  S  K  S  D  V  R  R  N  L  V  Q  S  L  W  K  W  Y  C  F  L  K  S  L  L  T  K  L  F  K  C  L  L  P  L  S  *  T  K  N  V  M  I  G  M  H  L  M  R  Y  R :   F  S  N  L  T  R  R  S  L  L  I  R  R  L  L  Q  L  *  I  I  K  M  M  M  L  H  Q  R  S  W  Y  K  M  V  C  G  G  N  I  T  G  S  G  L  F  Q  R  L  E  S  *  L  M  E  L  P  N  M  E  L  E  D  G  V  T  *  R  S  S  I  S  H  H  L  F  I  E  H  L  W  I  S  R :   I  N  G  G  I  F  L  K  Q  L  I  Y  R  N  K  A  N  Q  R :   K  R  V  N  I  T  C  L  G  D  L  C  Q  S  L  S  C  I  E  S  V  N  W  R  T  C  I  H  I  Q  E  T  G  G  A  R  V  P  V  L  H  V  P  H  L  L  L  S  I  L  T  V  L  T  P  R  D  D  P  T  C  D  I  P  L  L  C  I  V  T  G  V  T  S  G  N  N  P  I  F  T  F  K  Y  W  L  L  A  L  L  Y  Q  L  A  A  *  F  V  Y  R  A  A  S  F  Q  V  K  R  R  F  C  I  I  F  R  Y  L  *  K  C  N  R  H  I  C  K  L  F  F  L  Y  F  Q  L  I  Q  V  L  M  F  Q  H  F  V  Y  M  K  *  F  V  T :   L  N  R  E   </first_frame>
            <second_frame>  V  S  L  Q  L  N  H  E  S   : E  F  S  I  *  K  W  F  C  F  S  R  G  L  V  *  *  I  R :   N  P  *  *  S  C  F  Y  L  W  C  L  V  F  *  *  E  E  G  I  K  G  H  G  K  E  R  C  F  V  Q  Y  R :   F  Q  Y  C  I  *  K  R  K  *  N  *  P  R   : C  P  *  S  K  A  K  S  I  *  G  W  K  N  S  S  T  K  *  S  F  H  S  M  *  R  L  S  V  R :   Y  *  I  C  *  K  H  H  K  S  G  L  W  F  K  *  R  I  A  G  P  Y  I  R  K  S  D  S  I  I  *  L  *  W  N  *  H  L  W  N  A  I  L  C  G  I  S  C  A  R  I  S  K  S  E  C  Y  V  W  P  Y  Q  F  R  V  A  *  P  F  S  *  Q  V  *  K  S  D  A  S  *  V  Q  C  C  E  I  P  Y  C  F  Q  S  R  R  Y  Q  Q  C  G  *  C  G  R  L  L  C  *  S  C  S  F  *  E  D  E  *  Q  H  D  *  P  F  C  A  N  I  *  R  N  F  F  Y  V  Y  C  Y  T  K  *  G  A  R  C  K  L  *  K  L  *  Y  A  *  I  L  *  N  K  P  S  S  H  F  *  S  N  K  H  R  H  S  C  H  S  K  A  S  A  *  A  Y  T  K  V  Y  *  *  I  V  K  P  *  C  *  A  S  Q  E  K  S  R  G  F  Y  *  W  C  R  I  K  E  *  A  S  Q  S  Q  M  S  E  E  T  S  C  R  V  Y  G  N  G  I  V  F  *  R  V  F  L  R  S  Y  S  S  A  F  C  L  S  R  E  R  R  M  *  *  L  G  C  I  *  C  D  T   : G  F  Q  T  S  Q  G  G  A  S  S  *  G  G  Y  Y  S  C  E  S  *  R  *  *  C  Y  T  K  E  V  G  T  R  W  C  A  E  E  T  S  Q  A  L  D  C  F  R  G  *  K  V  D  *  W  S  C  P  I  W  S  W  K  M  E  S  H  K  E  A  L  F  L  I  I  C  S  *  N  T  C  G  S  Q   : G  *  M  E  E  S  S  *  S  N  L  S  T  E  T  K  Q  I  N   : G  K  G  *  T  *  P  V  L  A  T  F  A  K  V  C  P  A  S  S  Q  *  T  G  E  H  A  S  I  S  K  K  P  E  V  Q  E  F  P  F  S  M  C  L  I  F  S  *  A  F  *  Q  F  *  H  P  V  T  T  P  P  V  I  F  L  S  Y  A  *  L  Q  E  *  H  L  V  I  T  R  F  L  R  S  N  I  G  F  *  L  S  Y  T  N  S  L  H  S  S  C  I  E  Q  L  H  F  K  *  K  E  G  S  V  *  F  F  V  T  S  R  N  A  I  V  T  S  V  N  F  F  F  C  I  S  N  *  Y  K  C  L  C  F  S  I  L  C  I  *  S  S  L  *   : P  *  I  G  K  </second_frame>
            <third_frame>   Y  H  Y  N  *  I  M  N  Q  :  N  S  A  Y  R  S  G  F  A  S  L  G  V  W  F  D  E  S   : E  T  R  D  D  H  A  S  I  S  G  V  L  C  F  D  E  K  R  V  L  K  G  M  E  R  K  G  A  L  Y  N  I   : G  S  S  I  A  S  K  R  E  N  E  I  N  Q  D  :  V  L  D  L  K  R  S  Q  F  E  A  G  K  I  Q  A  Q  N  D  L  S  T  P  C  E  D  Y  L  L   : D  I  E  F  A  E  S  I  T  N  L  D  Y  G  S  S  R  G  L  L  D  P  I  L  E  S  Q  I  P  L  S  S  C  D  G  T  D  T  C  G  M  P  Y  S  A  G  L  V  V  Q  E  S  Q  S  Q  N  A  M  F  G  L  T  N  S  E  L  H  D  L  S  R  D  K  C  E  S  Q  M  L  V  E  Y  N  A  V  K  F  P  T  A  F  N  P  G  D  I  S  N  V  D  D  V  A  G  F  F  A  E  A  A  A  S  E  K  M  N  D  S  M  I  D  H  S  A  L  T  S  N  G  I  S  F  M  S  T  A  T  Q  N  E  G  Q  D  V  N  C  E  S  F  D  M  H  E  S  S  E  I  S  P  P  V  T  S  E  A  I  N  I  D  T  P  V  T  Q  K  R  L  R  K  P  T  R  R  Y  I  D  E  S  S  N  L  N  A  K  R  R  K  K  R  A  E  V  S  T  S  G  A  E  S  K  N  K  L  L  K  V  R  C  Q  K  K  P  R  A  E  S  M  E  M  V  L  F  S  E  E  S  S  Y  E  A  I  Q  V  P  F  A  S  L  V  N  E  E  C  D  D  W  D  A  S  D  A  I  Q  :  V  F  K  P  H  K  E  E  P  P  H  K  E  A  T  T  V  V  N  H  K  D  D  D  V  T  P  K  K  L  V  Q  D  G  V  R  R  K  H  H  R  L  W  T  V  S  E  V  R  K  L  I  D  G  V  A  Q  Y  G  V  G  R  W  S  H  I  K  K  L  Y  F  S  S  S  V  H  R  T  P  V  D  L  K  :  D  K  W  R  N  L  L  K  A  T  Y  L  Q  K  Q  S  K  S  T  :  E  K  G  K  H  N  L  S  W  R  P  L  P  K  S  V  L  H  R  V  S  E  L  A  N  M  H  P  Y  P  R  N  R  R  C  K  S  S  R  S  P  C  A  S  S  S  P  E  H  S  N  S  S  N  T  P  *  R  P  H  L  *  Y  S  S  P  M  H  S  Y  R  S  N  I  W  *  *  P  D  F  Y  V  Q  I  L  A  F  S  S  L  I  P  T  R  C  I  V  R  V  *  S  S  F  I  S  S  E  K  K  V  L  Y  N  F  S  L  P  L  E  M  Q  S  S  H  L  *  T  F  F  F  V  F  P  I  D  T  S  A  Y  V  S  A  F  C  V  Y  E  V  V  C  D  :  P  K  *  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12139" stop="12150"/>
                    <exon start="16300" stop="16354"/>
                    <exon start="17579" stop="17677"/>
                    <exon start="17865" stop="17908"/>
                    <exon start="19472" stop="19559"/>
                    <exon start="19655" stop="20442"/>
                    <exon start="21049" stop="21297"/>
                    <exon start="21420" stop="21476"/>
                    <exon start="22255" stop="22425"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMNQNSAYRSGFASLGVWFDESETRDDHASISGVLCFDEKRVLKGMERKGALYNIGSSIASKRENEINQDVLDLKRSQFEAGKIQAQNDLSTPCEDYLLDIEFAESITNLDYGSSRGLLDPILESQIPLSSCDGTDTCGMPYSAGLVVQESQSQNAMFGLTNSELHDLSRDKCESQMLVEYNAVKFPTAFNPGDISNVDDVAGFFAEAAASEKMNDSMIDHSALTSNGISFMSTATQNEGQDVNCESFDMHESSEISPPVTSEAINIDTPVTQKRLRKPTRRYIDESSNLNAKRRKKRAEVSTSGAESKNKLLKVRCQKKPRAESMEMVLFSEESSYEAIQVPFASLVNEECDDWDASDAIQVFKPHKEEPPHKEATTVVNHKDDDVTPKKLVQDGVRRKHHRLWTVSEVRKLIDGVAQYGVGRWSHIKKLYFSSSVHRTPVDLKDKWRNLLKATYLQKQSKSTEKGKHNLSWRPLPKSVLHRVSELANMHPYPRNRRCKSSRSPCASSSPEHSNSSNTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16004" e_stop="16024"/>
            <exon e_start="16300" e_stop="16354"/>
            <exon e_start="17579" e_stop="17677"/>
            <exon e_start="17865" e_stop="17908"/>
            <exon e_start="19472" e_stop="19559"/>
            <exon e_start="19655" e_stop="20442"/>
            <exon e_start="21049" e_stop="21297"/>
            <exon e_start="21420" e_stop="21476"/>
            <exon e_start="22255" e_stop="22677"/>
            <exon e_start="23509" e_stop="23524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.975" e_score="0.571"/>
          <exon-intron don_prob="0.953" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="0.957"/>
          <exon-intron don_prob="0.835" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="16004" e_stop="16024" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.975">
            <gDNA_intron_boundary i_start="16025" i_stop="16299" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16354" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.969">
            <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17579" e_stop="17677" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17865" e_stop="17908" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17909" i_stop="19471" i_length="1563"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19472" e_stop="19559" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.965">
            <gDNA_intron_boundary i_start="19560" i_stop="19654" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="19655" e_stop="20442" e_length="788"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="20443" i_stop="21048" i_length="606"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21049" e_stop="21297" e_length="249"/>
          </exon>
          <intron i_serial="7" don_prob="0.835" acc_prob="0.957">
            <gDNA_intron_boundary i_start="21298" i_stop="21419" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21420" e_stop="21476" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.888">
            <gDNA_intron_boundary i_start="21477" i_stop="22254" i_length="778"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="22255" e_stop="22677" e_length="423"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22678" i_stop="23508" i_length="831"/>
          </intron>
          <exon e_serial="10" e_score="0.688">
            <gDNA_exon_boundary e_start="23509" e_stop="23524" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16004" stop="16024"/>
              <exon start="16300" stop="16354"/>
              <exon start="17579" stop="17677"/>
              <exon start="17865" stop="17908"/>
              <exon start="19472" stop="19559"/>
              <exon start="19655" stop="19888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19841" stop="20442"/>
              <exon start="21049" stop="21281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20423" stop="20442"/>
              <exon start="21049" stop="21297"/>
              <exon start="21420" stop="21476"/>
              <exon start="22255" stop="22518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22293" stop="22677"/>
              <exon start="23509" stop="23524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACACCTAAATGCTTTTACAG : AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG : AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG : GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT : GTCCTTGATCTAAAGCGAAGTCAATTTGAGGCTGGAAAAATTCAAGCACAAAATGATCTTTCCACTCCATGTGAAGATTATCTGTTAG : ATATTGAATTTGCTGAAAGCATCACAAATCTGGATTATGGTTCAAGTAGAGGATTGCTGGACCCTATATTAGAAAGTCAGATTCCATTATCTAGTTGTGATGGAACTGACACCTGTGGAATGCCATACTCTGCGGGATTAGTTGTGCAAGAATCTCAAAGTCAGAATGCTATGTTTGGCCTTACCAATTCAGAGTTGCATGACCTTTCTCGTGACAAGTGTGAAAGTCAGATGCTAGTTGAGTACAATGCTGTGAAATTCCCTACTGCTTTCAATCCAGGAGATATCAGCAATGTGGATGATGTGGCAGGCTTCTTTGCTGAAGCTGCAGCTTCTGAGAAGATGAATGACAGCATGATTGACCATTCTGCGCTAACATCTAACGGAATTTCTTTTATGTCTACTGCTACACAAAATGAGGGGCAAGATGTAAACTGTGAAAGCTTTGATATGCATGAATCCTCTGAAATAAGCCCTCCAGTCACTTCTGAAGCAATAAACATCGACACTCCTGTCACTCAAAAGCGTCTGCGTAAGCCTACACGAAGGTATATTGATGAATCGTCAAACCTTAATGCTAAGCGTCGCAAGAAAAGAGCAGAGGTTTCTACTAGTGGTGCAGAATCAAAGAATAAGCTTCTCAAAGTCAGATGTCAGAAGAAACCTCGTGCAGAGTCTATGGAAATGGTATTGTTTTCTGAAGAGTCTTCTTACGAAGCTATTCAAGTGCCTTTTGCCTCTCTCGTGAACGAAGAATGTGATGATTGGGATGCATCTGATGCGATACAG : GTTTTCAAACCTCACAAGGAGGAGCCTCCTCATAAGGAGGCTACTACAGTTGTGAATCATAAAGATGATGATGTTACACCAAAGAAGTTGGTACAAGATGGTGTGCGGAGGAAACATCACAGGCTCTGGACTGTTTCAGAGGTTAGAAAGTTGATTGATGGAGTTGCCCAATATGGAGTTGGAAGATGGAGTCACATAAAGAAGCTCTATTTCTCATCATCTGTTCATAGAACACCTGTGGATCTCAAG : GATAAATGGAGGAATCTTCTTAAAGCAACTTATCTACAGAAACAAAGCAAATCAACG : GAAAAGGGTAAACATAACCTGTCTTGGCGACCTTTGCCAAAGTCTGTCCTGCATCGAGTCAGTGAACTGGCGAACATGCATCCATATCCAAGAAACCGGAGGTGCAAGAGTTCCCGTTCTCCATGTGCCTCATCTTCTCCTGAGCATTCTAACAGTTCTAACACCCCGTGACGACCCCACCTGTGATATTCCTCTCCTATGCATAGTTACAGGAGTAACATCTGGTAATAACCCGATTTTTACGTTCAAATATTGGCTTTTAGCTCTCTTATACCAACTCGCTGCATAGTTCGTGTATAGAGCAGCTTCATTTCAAGTGAAAAGAAGGTTCTGTATAATTTTTCGTTACCTCTAGAAATGCAATCGTCACATCTGTAAACTTTTTTTTTTGTATTTCCAATTGATACAAGTGCTTATGTTTCA : AAAGAAAGGATAAGAA</gDNA_template>
            <first_frame> Y  T  *  M  L  L  Q  :  N  S  A  Y  R  S  G  F  A  S  L  G  V  W  F  D  E  S   : E  T  R  D  D  H  A  S  I  S  G  V  L  C  F  D  E  K  R  V  L  K  G  M  E  R  K  G  A  L  Y  N  I   : G  S  S  I  A  S  K  R  E  N  E  I  N  Q  D  :  V  L  D  L  K  R  S  Q  F  E  A  G  K  I  Q  A  Q  N  D  L  S  T  P  C  E  D  Y  L  L   : D  I  E  F  A  E  S  I  T  N  L  D  Y  G  S  S  R  G  L  L  D  P  I  L  E  S  Q  I  P  L  S  S  C  D  G  T  D  T  C  G  M  P  Y  S  A  G  L  V  V  Q  E  S  Q  S  Q  N  A  M  F  G  L  T  N  S  E  L  H  D  L  S  R  D  K  C  E  S  Q  M  L  V  E  Y  N  A  V  K  F  P  T  A  F  N  P  G  D  I  S  N  V  D  D  V  A  G  F  F  A  E  A  A  A  S  E  K  M  N  D  S  M  I  D  H  S  A  L  T  S  N  G  I  S  F  M  S  T  A  T  Q  N  E  G  Q  D  V  N  C  E  S  F  D  M  H  E  S  S  E  I  S  P  P  V  T  S  E  A  I  N  I  D  T  P  V  T  Q  K  R  L  R  K  P  T  R  R  Y  I  D  E  S  S  N  L  N  A  K  R  R  K  K  R  A  E  V  S  T  S  G  A  E  S  K  N  K  L  L  K  V  R  C  Q  K  K  P  R  A  E  S  M  E  M  V  L  F  S  E  E  S  S  Y  E  A  I  Q  V  P  F  A  S  L  V  N  E  E  C  D  D  W  D  A  S  D  A  I  Q  :  V  F  K  P  H  K  E  E  P  P  H  K  E  A  T  T  V  V  N  H  K  D  D  D  V  T  P  K  K  L  V  Q  D  G  V  R  R  K  H  H  R  L  W  T  V  S  E  V  R  K  L  I  D  G  V  A  Q  Y  G  V  G  R  W  S  H  I  K  K  L  Y  F  S  S  S  V  H  R  T  P  V  D  L  K  :  D  K  W  R  N  L  L  K  A  T  Y  L  Q  K  Q  S  K  S  T  :  E  K  G  K  H  N  L  S  W  R  P  L  P  K  S  V  L  H  R  V  S  E  L  A  N  M  H  P  Y  P  R  N  R  R  C  K  S  S  R  S  P  C  A  S  S  S  P  E  H  S  N  S  S  N  T  P  *  R  P  H  L  *  Y  S  S  P  M  H  S  Y  R  S  N  I  W  *  *  P  D  F  Y  V  Q  I  L  A  F  S  S  L  I  P  T  R  C  I  V  R  V  *  S  S  F  I  S  S  E  K  K  V  L  Y  N  F  S  L  P  L  E  M  Q  S  S  H  L  *  T  F  F  F  V  F  P  I  D  T  S  A  Y  V  S  :  K  E  R  I  R  </first_frame>
            <second_frame>  T  P  K  C  F  Y  R :   I  Q  H  I  E  V  V  L  L  L  *  G  S  G  L  M  N  Q  :  K  P  V  M  I  M  L  L  S  L  V  S  C  V  L  M  R  R  G  Y  *  R  A  W  K  G  K  V  L  C  T  I  *  :  V  P  V  L  H  L  K  E  K  M  K  L  T  K  M :   S  L  I  *  S  E  V  N  L  R  L  E  K  F  K  H  K  M  I  F  P  L  H  V  K  I  I  C  *  :  I  L  N  L  L  K  A  S  Q  I  W  I  M  V  Q  V  E  D  C  W  T  L  Y  *  K  V  R  F  H  Y  L  V  V  M  E  L  T  P  V  E  C  H  T  L  R  D  *  L  C  K  N  L  K  V  R  M  L  C  L  A  L  P  I  Q  S  C  M  T  F  L  V  T  S  V  K  V  R  C  *  L  S  T  M  L  *  N  S  L  L  L  S  I  Q  E  I  S  A  M  W  M  M  W  Q  A  S  L  L  K  L  Q  L  L  R  R  *  M  T  A  *  L  T  I  L  R  *  H  L  T  E  F  L  L  C  L  L  L  H  K  M  R  G  K  M  *  T  V  K  A  L  I  C  M  N  P  L  K  *  A  L  Q  S  L  L  K  Q  *  T  S  T  L  L  S  L  K  S  V  C  V  S  L  H  E  G  I  L  M  N  R  Q  T  L  M  L  S  V  A  R  K  E  Q  R  F  L  L  V  V  Q  N  Q  R  I  S  F  S  K  S  D  V  R  R  N  L  V  Q  S  L  W  K  W  Y  C  F  L  K  S  L  L  T  K  L  F  K  C  L  L  P  L  S  *  T  K  N  V  M  I  G  M  H  L  M  R  Y  R :   F  S  N  L  T  R  R  S  L  L  I  R  R  L  L  Q  L  *  I  I  K  M  M  M  L  H  Q  R  S  W  Y  K  M  V  C  G  G  N  I  T  G  S  G  L  F  Q  R  L  E  S  *  L  M  E  L  P  N  M  E  L  E  D  G  V  T  *  R  S  S  I  S  H  H  L  F  I  E  H  L  W  I  S  R :   I  N  G  G  I  F  L  K  Q  L  I  Y  R  N  K  A  N  Q  R :   K  R  V  N  I  T  C  L  G  D  L  C  Q  S  L  S  C  I  E  S  V  N  W  R  T  C  I  H  I  Q  E  T  G  G  A  R  V  P  V  L  H  V  P  H  L  L  L  S  I  L  T  V  L  T  P  R  D  D  P  T  C  D  I  P  L  L  C  I  V  T  G  V  T  S  G  N  N  P  I  F  T  F  K  Y  W  L  L  A  L  L  Y  Q  L  A  A  *  F  V  Y  R  A  A  S  F  Q  V  K  R  R  F  C  I  I  F  R  Y  L  *  K  C  N  R  H  I  C  K  L  F  F  L  Y  F  Q  L  I  Q  V  L  M  F  Q :   K  K  G  *  E </second_frame>
            <third_frame>   H  L  N  A  F  T   : E  F  S  I  *  K  W  F  C  F  S  R  G  L  V  *  *  I  R :   N  P  *  *  S  C  F  Y  L  W  C  L  V  F  *  *  E  E  G  I  K  G  H  G  K  E  R  C  F  V  Q  Y  R :   F  Q  Y  C  I  *  K  R  K  *  N  *  P  R   : C  P  *  S  K  A  K  S  I  *  G  W  K  N  S  S  T  K  *  S  F  H  S  M  *  R  L  S  V  R :   Y  *  I  C  *  K  H  H  K  S  G  L  W  F  K  *  R  I  A  G  P  Y  I  R  K  S  D  S  I  I  *  L  *  W  N  *  H  L  W  N  A  I  L  C  G  I  S  C  A  R  I  S  K  S  E  C  Y  V  W  P  Y  Q  F  R  V  A  *  P  F  S  *  Q  V  *  K  S  D  A  S  *  V  Q  C  C  E  I  P  Y  C  F  Q  S  R  R  Y  Q  Q  C  G  *  C  G  R  L  L  C  *  S  C  S  F  *  E  D  E  *  Q  H  D  *  P  F  C  A  N  I  *  R  N  F  F  Y  V  Y  C  Y  T  K  *  G  A  R  C  K  L  *  K  L  *  Y  A  *  I  L  *  N  K  P  S  S  H  F  *  S  N  K  H  R  H  S  C  H  S  K  A  S  A  *  A  Y  T  K  V  Y  *  *  I  V  K  P  *  C  *  A  S  Q  E  K  S  R  G  F  Y  *  W  C  R  I  K  E  *  A  S  Q  S  Q  M  S  E  E  T  S  C  R  V  Y  G  N  G  I  V  F  *  R  V  F  L  R  S  Y  S  S  A  F  C  L  S  R  E  R  R  M  *  *  L  G  C  I  *  C  D  T   : G  F  Q  T  S  Q  G  G  A  S  S  *  G  G  Y  Y  S  C  E  S  *  R  *  *  C  Y  T  K  E  V  G  T  R  W  C  A  E  E  T  S  Q  A  L  D  C  F  R  G  *  K  V  D  *  W  S  C  P  I  W  S  W  K  M  E  S  H  K  E  A  L  F  L  I  I  C  S  *  N  T  C  G  S  Q   : G  *  M  E  E  S  S  *  S  N  L  S  T  E  T  K  Q  I  N   : G  K  G  *  T  *  P  V  L  A  T  F  A  K  V  C  P  A  S  S  Q  *  T  G  E  H  A  S  I  S  K  K  P  E  V  Q  E  F  P  F  S  M  C  L  I  F  S  *  A  F  *  Q  F  *  H  P  V  T  T  P  P  V  I  F  L  S  Y  A  *  L  Q  E  *  H  L  V  I  T  R  F  L  R  S  N  I  G  F  *  L  S  Y  T  N  S  L  H  S  S  C  I  E  Q  L  H  F  K  *  K  E  G  S  V  *  F  F  V  T  S  R  N  A  I  V  T  S  V  N  F  F  F  C  I  S  N  *  Y  K  C  L  C  F   : K  R  K  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16013" stop="16024"/>
                    <exon start="16300" stop="16354"/>
                    <exon start="17579" stop="17677"/>
                    <exon start="17865" stop="17908"/>
                    <exon start="19472" stop="19559"/>
                    <exon start="19655" stop="20442"/>
                    <exon start="21049" stop="21297"/>
                    <exon start="21420" stop="21476"/>
                    <exon start="22255" stop="22425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLQNSAYRSGFASLGVWFDESETRDDHASISGVLCFDEKRVLKGMERKGALYNIGSSIASKRENEINQDVLDLKRSQFEAGKIQAQNDLSTPCEDYLLDIEFAESITNLDYGSSRGLLDPILESQIPLSSCDGTDTCGMPYSAGLVVQESQSQNAMFGLTNSELHDLSRDKCESQMLVEYNAVKFPTAFNPGDISNVDDVAGFFAEAAASEKMNDSMIDHSALTSNGISFMSTATQNEGQDVNCESFDMHESSEISPPVTSEAINIDTPVTQKRLRKPTRRYIDESSNLNAKRRKKRAEVSTSGAESKNKLLKVRCQKKPRAESMEMVLFSEESSYEAIQVPFASLVNEECDDWDASDAIQVFKPHKEEPPHKEATTVVNHKDDDVTPKKLVQDGVRRKHHRLWTVSEVRKLIDGVAQYGVGRWSHIKKLYFSSSVHRTPVDLKDKWRNLLKATYLQKQSKSTEKGKHNLSWRPLPKSVLHRVSELANMHPYPRNRRCKSSRSPCASSSPEHSNSSNTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12079" e_stop="12150"/>
            <exon e_start="16300" e_stop="16354"/>
            <exon e_start="17579" e_stop="17677"/>
            <exon e_start="17865" e_stop="17908"/>
            <exon e_start="18566" e_stop="18723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.567" e_score="1.000"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12079" e_stop="12150" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.975">
            <gDNA_intron_boundary i_start="12151" i_stop="16299" i_length="4149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16354" e_length="55"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.969">
            <gDNA_intron_boundary i_start="16355" i_stop="17578" i_length="1224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17579" e_stop="17677" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17678" i_stop="17864" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17865" e_stop="17908" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.567">
            <gDNA_intron_boundary i_start="17909" i_stop="18565" i_length="657"/>
          </intron>
          <exon e_serial="5" e_score="0.930">
            <gDNA_exon_boundary e_start="18566" e_stop="18723" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12079" stop="12150"/>
              <exon start="16300" stop="16354"/>
              <exon start="17579" stop="17677"/>
              <exon start="17865" stop="17908"/>
              <exon start="18566" stop="18723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTATTTGTTAATACACACATAGACACATAGTTGAGTTAAAGTATCACTACAATTGAATCATGAATCAG : AATTCAGCATATAGAAGTGGTTTTGCTTCTCTAGGGGTCTGGTTTGATGAATCAG : AAACCCGTGATGATCATGCTTCTATCTCTGGTGTCTTGTGTTTTGATGAGAAGAGGGTATTAAAGGGCATGGAAAGGAAAGGTGCTTTGTACAATATAG : GTTCCAGTATTGCATCTAAAAGAGAAAATGAAATTAACCAAGAT : GACCTCATGGTTGCACCAGCGAGAAGGGACACGAGGCTATTCCTTATGGGTCGTTTGGTCTGAGGGATAAAAATAAATAGAATTGGTATAAAATTTTGGTGTCTTGTTTGGTTGTCTTATTTGGGTAACTTGTCCCACGTTTATACCATAGTGATGGG</gDNA_template>
            <first_frame> F  S  I  C  *  Y  T  H  R  H  I  V  E  L  K  Y  H  Y  N  *  I  M  N  Q  :  N  S  A  Y  R  S  G  F  A  S  L  G  V  W  F  D  E  S   : E  T  R  D  D  H  A  S  I  S  G  V  L  C  F  D  E  K  R  V  L  K  G  M  E  R  K  G  A  L  Y  N  I   : G  S  S  I  A  S  K  R  E  N  E  I  N  Q  D  :  D  L  M  V  A  P  A  R  R  D  T  R  L  F  L  M  G  R  L  V  *  G  I  K  I  N  R  I  G  I  K  F  W  C  L  V  W  L  S  Y  L  G  N  L  S  H  V  Y  T  I  V  M   </first_frame>
            <second_frame>  F  L  F  V  N  T  H  I  D  T  *  L  S  *  S  I  T  T  I  E  S  *  I  R :   I  Q  H  I  E  V  V  L  L  L  *  G  S  G  L  M  N  Q  :  K  P  V  M  I  M  L  L  S  L  V  S  C  V  L  M  R  R  G  Y  *  R  A  W  K  G  K  V  L  C  T  I  *  :  V  P  V  L  H  L  K  E  K  M  K  L  T  K  M :   T  S  W  L  H  Q  R  E  G  T  R  G  Y  S  L  W  V  V  W  S  E  G  *  K  *  I  E  L  V  *  N  F  G  V  L  F  G  C  L  I  W  V  T  C  P  T  F  I  P  *  *  W  </second_frame>
            <third_frame>   F  Y  L  L  I  H  T  *  T  H  S  *  V  K  V  S  L  Q  L  N  H  E  S   : E  F  S  I  *  K  W  F  C  F  S  R  G  L  V  *  *  I  R :   N  P  *  *  S  C  F  Y  L  W  C  L  V  F  *  *  E  E  G  I  K  G  H  G  K  E  R  C  F  V  Q  Y  R :   F  Q  Y  C  I  *  K  R  K  *  N  *  P  R   : *  P  H  G  C  T  S  E  K  G  H  E  A  I  P  Y  G  S  F  G  L  R  D  K  N  K  *  N  W  Y  K  I  L  V  S  C  L  V  V  L  F  G  *  L  V  P  R  L  Y  H  S  D  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12139" stop="12150"/>
                    <exon start="16300" stop="16354"/>
                    <exon start="17579" stop="17677"/>
                    <exon start="17865" stop="17908"/>
                    <exon start="18566" stop="18628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMNQNSAYRSGFASLGVWFDESETRDDHASISGVLCFDEKRVLKGMERKGALYNIGSSIASKRENEINQDDLMVAPARRDTRLFLMGRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23421" PGL_stop="22273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23421" e_stop="23402"/>
            <exon e_start="22704" e_stop="22273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.550">
            <gDNA_exon_boundary e_start="23421" e_stop="23402" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23401" i_stop="22705" i_length="697"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22704" e_stop="22273" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23421" stop="23402"/>
              <exon start="22704" stop="22273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234291" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTCTTGTTTGGGAGATGC : ACAAACTACTTCATATACACAAAATGCTGAAACATAAGCACTTGTATCAATTGGAAATACAAAAAAAAAAGTTTACAGATGTGACGATTGCATTTCTAGAGGTAACGAAAAATTATACAGAACCTTCTTTTCACTTGAAATGAAGCTGCTCTATACACGAACTATGCAGCGAGTTGGTATAAGAGAGCTAAAAGCCAATATTTGAACGTAAAAATCGGGTTATTACCAGATGTTACTCCTGTAACTATGCATAGGAGAGGAATATCACAGGTGGGGTCGTCACGGGGTGTTAGAACTGTTAGAATGCTCAGGAGAAGATGAGGCACATGGAGAACGGGAACTCTTGCACCTCCGGTTTCTTGGATATGGATGCATGTTCGCCAGTTCACTGACTCGATGCAGGACAGACTTTGGCAAAGGTCGCCAAGACAG</gDNA_template>
            <first_frame> C  S  C  L  G  D  A :   Q  T  T  S  Y  T  Q  N  A  E  T  *  A  L  V  S  I  G  N  T  K  K  K  V  Y  R  C  D  D  C  I  S  R  G  N  E  K  L  Y  R  T  F  F  S  L  E  M  K  L  L  Y  T  R  T  M  Q  R  V  G  I  R  E  L  K  A  N  I  *  T  *  K  S  G  Y  Y  Q  M  L  L  L  *  L  C  I  G  E  E  Y  H  R  W  G  R  H  G  V  L  E  L  L  E  C  S  G  E  D  E  A  H  G  E  R  E  L  L  H  L  R  F  L  G  Y  G  C  M  F  A  S  S  L  T  R  C  R  T  D  F  G  K  G  R  Q  D   </first_frame>
            <second_frame>  V  L  V  W  E  M   : H  K  L  L  H  I  H  K  M  L  K  H  K  H  L  Y  Q  L  E  I  Q  K  K  K  F  T  D  V  T  I  A  F  L  E  V  T  K  N  Y  T  E  P  S  F  H  L  K  *  S  C  S  I  H  E  L  C  S  E  L  V  *  E  S  *  K  P  I  F  E  R  K  N  R  V  I  T  R  C  Y  S  C  N  Y  A  *  E  R  N  I  T  G  G  V  V  T  G  C  *  N  C  *  N  A  Q  E  K  M  R  H  M  E  N  G  N  S  C  T  S  G  F  L  D  M  D  A  C  S  P  V  H  *  L  D  A  G  Q  T  L  A  K  V  A  K  T  </second_frame>
            <third_frame>   F  L  F  G  R  C  :  T  N  Y  F  I  Y  T  K  C  *  N  I  S  T  C  I  N  W  K  Y  K  K  K  S  L  Q  M  *  R  L  H  F  *  R  *  R  K  I  I  Q  N  L  L  F  T  *  N  E  A  A  L  Y  T  N  Y  A  A  S  W  Y  K  R  A  K  S  Q  Y  L  N  V  K  I  G  L  L  P  D  V  T  P  V  T  M  H  R  R  G  I  S  Q  V  G  S  S  R  G  V  R  T  V  R  M  L  R  R  R  *  G  T  W  R  T  G  T  L  A  P  P  V  S  W  I  W  M  H  V  R  Q  F  T  D  S  M  Q  D  R  L  W  Q  R  S  P  R  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0130H12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23050" e_stop="23034"/>
            <exon e_start="22707" e_stop="22320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="0.471"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.471">
            <gDNA_exon_boundary e_start="23050" e_stop="23034" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23033" i_stop="22708" i_length="326"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="22707" e_stop="22320" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23050" stop="23034"/>
              <exon start="22707" stop="22320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234046" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGTGAATCTTAATA : GTCACAAACTACTTCATATACACAAAATGCTGAAACATAAGCACTTGTATCAATTGGAAATACAAAAAAAAAAGTTTACAGATGTGACGATTGCATTTCTAGAGGTAACGAAAAATTATACAGAACCTTCTTTTCACTTGAAATGAAGCTGCTCTATACACGAACTATGCAGCGAGTTGGTATAAGAGAGCTAAAAGCCAATATTTGAACGTAAAAATCGGGTTATTACCAGATGTTACTCCTGTAACTATGCATAGGAGAGGAATATCACAGGTGGGGTCGTCACGGGGTGTTAGAACTGTTAGAATGCTCAGGAGAAGATGAGGCACATGGAGAACGGGAACTCTTGCACCTCCGGTTTCTTGGATATGGATGCATGTTCGCCAGT</gDNA_template>
            <first_frame> I  C  E  S  *  * :   S  Q  T  T  S  Y  T  Q  N  A  E  T  *  A  L  V  S  I  G  N  T  K  K  K  V  Y  R  C  D  D  C  I  S  R  G  N  E  K  L  Y  R  T  F  F  S  L  E  M  K  L  L  Y  T  R  T  M  Q  R  V  G  I  R  E  L  K  A  N  I  *  T  *  K  S  G  Y  Y  Q  M  L  L  L  *  L  C  I  G  E  E  Y  H  R  W  G  R  H  G  V  L  E  L  L  E  C  S  G  E  D  E  A  H  G  E  R  E  L  L  H  L  R  F  L  G  Y  G  C  M  F  A  S </first_frame>
            <second_frame>  F  V  N  L  N   : S  H  K  L  L  H  I  H  K  M  L  K  H  K  H  L  Y  Q  L  E  I  Q  K  K  K  F  T  D  V  T  I  A  F  L  E  V  T  K  N  Y  T  E  P  S  F  H  L  K  *  S  C  S  I  H  E  L  C  S  E  L  V  *  E  S  *  K  P  I  F  E  R  K  N  R  V  I  T  R  C  Y  S  C  N  Y  A  *  E  R  N  I  T  G  G  V  V  T  G  C  *  N  C  *  N  A  Q  E  K  M  R  H  M  E  N  G  N  S  C  T  S  G  F  L  D  M  D  A  C  S  P   </second_frame>
            <third_frame>   L  *  I  L  I  :  V  T  N  Y  F  I  Y  T  K  C  *  N  I  S  T  C  I  N  W  K  Y  K  K  K  S  L  Q  M  *  R  L  H  F  *  R  *  R  K  I  I  Q  N  L  L  F  T  *  N  E  A  A  L  Y  T  N  Y  A  A  S  W  Y  K  R  A  K  S  Q  Y  L  N  V  K  I  G  L  L  P  D  V  T  P  V  T  M  H  R  R  G  I  S  Q  V  G  S  S  R  G  V  R  T  V  R  M  L  R  R  R  *  G  T  W  R  T  G  T  L  A  P  P  V  S  W  I  W  M  H  V  R  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0130H12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38150" PGL_stop="37325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38150" e_stop="37325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="38150" e_stop="37325" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38150" stop="37325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGGAATTACAGGTCAATTTTCAGGACTGCTTGGGAAGGTTCTAATTTGGGGTTAAGAAGGCTTTCTGGGTTTGTTTTGATGAGGTGGGCAGTAAAGGATGCATTAGCTCAATTGTTGGGTATTTGGGTTTTTGGAGAAATTGAGGATCAATATTCATTTTTTAAGGTTTTTGTGAGGATGAAATTGATGCCCTTTTCGGATGTGGCGCCATGGGTTACAGGGCATGAGAAGGAAAGCTTGTGCTTTATCATCTCATGGTTCTTGGTGGAGTTGGTAGTGGGGTTTATTTTTGCTGTTGATTCTTGGGTTTCTATTGTGGACTCGAGGAAAAGTGGTAGGGAGGTTGTCAAAGAAGGATGTCATTTGTTGGGTATTATGGTGTGTCCTGCTATAGGAATCAAATGTTGGGAAGTTTTTGTTTGTGGGTGGTGTACGAGATGGATATTAGGTCGAATATTTGGAGAAGTGTTTGCACTGGCATTTCAGTGTGTTATGGAAGTTTATTTTATGGTTGCTTGGTTAACATTTTACTTGGCTGCAAGGTATAATGATGCATCCTCAGTTGGGAGGACATTTGGACGAAGAGAATTGGAAGGCTTTCTCGAGGGCGTTAGATGATACTAGGTGTGAATTCGCTAAAGATTCATTCCCCTGCCTTGGCATTACGTTGAAAGAAGCTTAAACTGGATGAACTATCGCGCTGGTGGGGTAATCTTTTTGTGCTTTTGATGTTCAATGCTTCAAAATTGTGAGTTAGCACGACACTGTTTAAGAAGTCACCAGCTATGCTTTGTATGTACTCTGTTCTGAGGCAATATATGACT</gDNA_template>
            <first_frame> *  G  I  T  G  Q  F  S  G  L  L  G  K  V  L  I  W  G  *  E  G  F  L  G  L  F  *  *  G  G  Q  *  R  M  H  *  L  N  C  W  V  F  G  F  L  E  K  L  R  I  N  I  H  F  L  R  F  L  *  G  *  N  *  C  P  F  R  M  W  R  H  G  L  Q  G  M  R  R  K  A  C  A  L  S  S  H  G  S  W  W  S  W  *  W  G  L  F  L  L  L  I  L  G  F  L  L  W  T  R  G  K  V  V  G  R  L  S  K  K  D  V  I  C  W  V  L  W  C  V  L  L  *  E  S  N  V  G  K  F  L  F  V  G  G  V  R  D  G  Y  *  V  E  Y  L  E  K  C  L  H  W  H  F  S  V  L  W  K  F  I  L  W  L  L  G  *  H  F  T  W  L  Q  G  I  M  M  H  P  Q  L  G  G  H  L  D  E  E  N  W  K  A  F  S  R  A  L  D  D  T  R  C  E  F  A  K  D  S  F  P  C  L  G  I  T  L  K  E  A  *  T  G  *  T  I  A  L  V  G  *  S  F  C  A  F  D  V  Q  C  F  K  I  V  S  *  H  D  T  V  *  E  V  T  S  Y  A  L  Y  V  L  C  S  E  A  I  Y  D  </first_frame>
            <second_frame>  R  E  L  Q  V  N  F  Q  D  C  L  G  R  F  *  F  G  V  K  K  A  F  W  V  C  F  D  E  V  G  S  K  G  C  I  S  S  I  V  G  Y  L  G  F  W  R  N  *  G  S  I  F  I  F  *  G  F  C  E  D  E  I  D  A  L  F  G  C  G  A  M  G  Y  R  A  *  E  G  K  L  V  L  Y  H  L  M  V  L  G  G  V  G  S  G  V  Y  F  C  C  *  F  L  G  F  Y  C  G  L  E  E  K  W  *  G  G  C  Q  R  R  M  S  F  V  G  Y  Y  G  V  S  C  Y  R  N  Q  M  L  G  S  F  C  L  W  V  V  Y  E  M  D  I  R  S  N  I  W  R  S  V  C  T  G  I  S  V  C  Y  G  S  L  F  Y  G  C  L  V  N  I  L  L  G  C  K  V  *  *  C  I  L  S  W  E  D  I  W  T  K  R  I  G  R  L  S  R  G  R  *  M  I  L  G  V  N  S  L  K  I  H  S  P  A  L  A  L  R  *  K  K  L  K  L  D  E  L  S  R  W  W  G  N  L  F  V  L  L  M  F  N  A  S  K  L  *  V  S  T  T  L  F  K  K  S  P  A  M  L  C  M  Y  S  V  L  R  Q  Y  M  T </second_frame>
            <third_frame>   G  N  Y  R  S  I  F  R  T  A  W  E  G  S  N  L  G  L  R  R  L  S  G  F  V  L  M  R  W  A  V  K  D  A  L  A  Q  L  L  G  I  W  V  F  G  E  I  E  D  Q  Y  S  F  F  K  V  F  V  R  M  K  L  M  P  F  S  D  V  A  P  W  V  T  G  H  E  K  E  S  L  C  F  I  I  S  W  F  L  V  E  L  V  V  G  F  I  F  A  V  D  S  W  V  S  I  V  D  S  R  K  S  G  R  E  V  V  K  E  G  C  H  L  L  G  I  M  V  C  P  A  I  G  I  K  C  W  E  V  F  V  C  G  W  C  T  R  W  I  L  G  R  I  F  G  E  V  F  A  L  A  F  Q  C  V  M  E  V  Y  F  M  V  A  W  L  T  F  Y  L  A  A  R  Y  N  D  A  S  S  V  G  R  T  F  G  R  R  E  L  E  G  F  L  E  G  V  R  *  Y  *  V  *  I  R  *  R  F  I  P  L  P  W  H  Y  V  E  R  S  L  N  W  M  N  Y  R  A  G  G  V  I  F  L  C  F  *  C  S  M  L  Q  N  C  E  L  A  R  H  C  L  R  S  H  Q  L  C  F  V  C  T  L  F  *  G  N  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38148" stop="37531"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNYRSIFRTAWEGSNLGLRRLSGFVLMRWAVKDALAQLLGIWVFGEIEDQYSFFKVFVRMKLMPFSDVAPWVTGHEKESLCFIISWFLVELVVGFIFAVDSWVSIVDSRKSGREVVKEGCHLLGIMVCPAIGIKCWEVFVCGWCTRWILGRIFGEVFALAFQCVMEVYFMVAWLTFYLAARYNDASSVGRTFGRRELEGFLEGVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44357" PGL_stop="40074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44357" e_stop="44128"/>
            <exon e_start="42978" e_stop="42925"/>
            <exon e_start="42443" e_stop="42397"/>
            <exon e_start="42304" e_stop="42273"/>
            <exon e_start="42184" e_stop="42083"/>
            <exon e_start="41901" e_stop="41834"/>
            <exon e_start="41649" e_stop="41573"/>
            <exon e_start="41488" e_stop="41391"/>
            <exon e_start="41107" e_stop="41037"/>
            <exon e_start="40954" e_stop="40888"/>
            <exon e_start="40806" e_stop="40626"/>
            <exon e_start="40393" e_stop="40074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="1.000" e_score="0.935"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="44357" e_stop="44128" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44127" i_stop="42979" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42978" e_stop="42925" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42443" e_stop="42397" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42304" e_stop="42273" e_length="32"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42184" e_stop="42083" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="41834" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41649" e_stop="41573" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.674" acc_prob="0.568">
            <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41488" e_stop="41391" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41107" e_stop="41037" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.826" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40954" e_stop="40888" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="40806" e_stop="40626" e_length="181"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.916">
            <gDNA_intron_boundary i_start="40625" i_stop="40394" i_length="232"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="40393" e_stop="40074" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44357" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44357" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44275" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40626"/>
              <exon start="40393" stop="40074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44274" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44270" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44267" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44264" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44263" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44254" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44253" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44253" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44172" stop="44128"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41888" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40626"/>
              <exon start="40393" stop="40364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41881" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41100" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40626"/>
              <exon start="40393" stop="40095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415122" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTTCATCACTCACCAGCCGACACTATTTTTCTAGTACTATATATAATCATATCTTTATACACTCATAGCAAAAGTTGCACCTACTTACTTCAAGATCTGAAATTTCTCCCAGCAGCACAAGAAAAAAATATAATTTATTAAACAATGGAGTACGATGGGATTCTTTTGGGCATGGGAAATCCATTACTCGATATCTCAGCTGTTGTAGATCAAGATTTCTTGAACAA : GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT : GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG : GTGCAACACAAAACTCAATCAGAGTGGCTCAG : TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT : GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG : GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG : TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAG : ATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCC : GTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAG : ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGGACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTG : GGGATGCATTTGTTGGAGGATTCTTGTCACAGTTGGTTCAAGAAAAACCTATCGCTGAGTGTGTTAGAGCAGGTTGTTATGCATCAAACGTTATCATCCAGAGGTCGGGTTGTACATACCCTGAGAAGCCAGATTTCGCTTAAGTTCATTCTTAGTTCTTCGTTTTCCTGTGTTATGCCTTCATTGAGAGAAACATATATCATCGAGTTCTACTGTTTTCAACTCGATCGATTCATTCTAATTTTCAGGCTATTGTTCACAAATATATGATTTGTTGTAAGGAATTTTGATTGCCTTTTGAGAATAACTCTATTAGGAAG</gDNA_template>
            <first_frame> T  L  H  H  S  P  A  D  T  I  F  L  V  L  Y  I  I  I  S  L  Y  T  H  S  K  S  C  T  Y  L  L  Q  D  L  K  F  L  P  A  A  Q  E  K  N  I  I  Y  *  T  M  E  Y  D  G  I  L  L  G  M  G  N  P  L  L  D  I  S  A  V  V  D  Q  D  F  L  N  K :   Y  E  I  K  P  N  N  A  I  L  A  E  D  K  H  L  P  M :   Y  D  E  M  A  A  K  P  T  V  E  Y  I  A  G   : G  A  T  Q  N  S  I  R  V  A  Q  :  W  M  L  P  F  P  G  A  T  S  Y  M  G  S  V  G  K  D  K  F  G  E  E  M  K  K  N  A  Q  D  A  G  V  N  :  V  H  Y  Y  E  D  E  T  A  P  T  G  T  C  A  V  C  V  L  D  G  E  R :   S  L  V  A  N  L  S  A  A  N  C  Y  K  V  D  H  L  K  R  P  E  N  W  A  L   : V  E  K  A  K  F  Y  Y  I  A  G  F  F  L  T  V  S  P  E  S  I  Q  L  V  A  E  H  A  A  A  N  N  K  :  I  F  S  M  N  L  S  A  P  F  I  C  E  F  F  R  D  P  Q  E  K  A  L  P :   Y  M  D  F  V  F  G  N  E  T  E  A  R  T  F  S  K  V  H  G  W  E  :  T  D  N  V  E  E  I  A  L  K  I  S  Q  W  P  K  A  S  G  H  K  R  I  T  V  I  T  Q  G  A  D  P  V  V  V  A  E  D  G  K  V  K  L  F  P  V  I  P  L  P  K  E  K  L  V  D  T  N  G  A   : G  D  A  F  V  G  G  F  L  S  Q  L  V  Q  E  K  P  I  A  E  C  V  R  A  G  C  Y  A  S  N  V  I  I  Q  R  S  G  C  T  Y  P  E  K  P  D  F  A  *  V  H  S  *  F  F  V  F  L  C  Y  A  F  I  E  R  N  I  Y  H  R  V  L  L  F  S  T  R  S  I  H  S  N  F  Q  A  I  V  H  K  Y  M  I  C  C  K  E  F  *  L  P  F  E  N  N  S  I  R  K </first_frame>
            <second_frame>  H  F  I  T  H  Q  P  T  L  F  F  *  Y  Y  I  *  S  Y  L  Y  T  L  I  A  K  V  A  P  T  Y  F  K  I  *  N  F  S  Q  Q  H  K  K  K  I  *  F  I  K  Q  W  S  T  M  G  F  F  W  A  W  E  I  H  Y  S  I  S  Q  L  L  *  I  K  I  S  *  T   : S  M  K  S  S  R  T  M  Q  F  L  Q  R  T  S  T  C  L   : C  M  M  K  W  Q  P  S  P  L  L  N  T  L  L  E  :  V  Q  H  K  T  Q  S  E  W  L  S :   G  C  Y  H  F  Q  V  Q  Q  V  T  W  A  Q  L  G  R  T  S  L  G  R  K  *  R  K  M  H  R  M  L  A  S  M :   F  I  T  M  R  M  R  L  L  Q  Q  G  L  V  L  F  V  C  *  M  A  R   : G  H  W  L  L  T  Y  Q  L  Q  T  A  T  R  L  T  I  *  N  D  Q  R  T  G  P  W  :  L  R  K  P  N  F  T  I  L  L  D  S  F  S  P  F  L  Q  N  L  F  S  L  L  L  S  T  Q  Q  P  I  T  R :   S  S  Q  *  T  F  Q  H  H  S  S  A  S  S  S  G  I  L  K  R  K  L  C   : R  I  W  T  L  Y  L  E  M  R  Q  K  Q  E  P  S  Q  K  Y  T  A  G  R :   R  I  M  L  K  K  *  L  *  K  S  R  N  G  Q  R  H  L  D  T  R  G  L  L  L  L  H  R  V  L  I  L  L  L  S  L  R  M  G  R  *  S  C  S  L  L  Y  R  C  Q  K  R  N  L  L  T  P  M  V  L  :  G  M  H  L  L  E  D  S  C  H  S  W  F  K  K  N  L  S  L  S  V  L  E  Q  V  V  M  H  Q  T  L  S  S  R  G  R  V  V  H  T  L  R  S  Q  I  S  L  K  F  I  L  S  S  S  F  S  C  V  M  P  S  L  R  E  T  Y  I  I  E  F  Y  C  F  Q  L  D  R  F  I  L  I  F  R  L  L  F  T  N  I  *  F  V  V  R  N  F  D  C  L  L  R  I  T  L  L  G   </second_frame>
            <third_frame>   T  S  S  L  T  S  R  H  Y  F  S  S  T  I  Y  N  H  I  F  I  H  S  *  Q  K  L  H  L  L  T  S  R  S  E  I  S  P  S  S  T  R  K  K  Y  N  L  L  N  N  G  V  R  W  D  S  F  G  H  G  K  S  I  T  R  Y  L  S  C  C  R  S  R  F  L  E  Q  :  V  *  N  Q  A  E  Q  C  N  S  C  R  G  Q  A  L  A  Y  :  V  *  *  N  G  S  Q  A  H  C  *  I  H  C  W  R :   C  N  T  K  L  N  Q  S  G  S   : V  D  A  T  I  S  R  C  N  K  L  H  G  L  S  W  E  G  Q  V  W  G  G  N  E  E  K  C  T  G  C  W  R  Q   : C  S  L  L  *  G  *  D  C  S  N  R  D  L  C  C  L  C  A  R  W  R  E  :  V  I  G  C  *  L  I  S  C  K  L  L  Q  G  *  P  F  E  T  T  R  E  L  G  L  G :   *  E  S  Q  I  L  L  Y  C  W  I  L  S  H  R  F  S  R  I  Y  S  A  C  C  *  A  R  S  S  Q  *  Q   : D  L  L  N  E  P  F  S  T  I  H  L  R  V  L  Q  G  S  S  R  E  S  F  A  :  V  Y  G  L  C  I  W  K  *  D  R  S  K  N  L  L  K  S  T  R  L  G   : D  G  *  C  *  R  N  S  F  E  N  L  A  M  A  K  G  I  W  T  Q  E  D  Y  C  Y  Y  T  G  C  *  S  C  C  C  R  *  G  W  E  G  E  A  V  P  C  Y  T  V  A  K  R  E  T  C  *  H  Q  W  C  W :   G  C  I  C  W  R  I  L  V  T  V  G  S  R  K  T  Y  R  *  V  C  *  S  R  L  L  C  I  K  R  Y  H  P  E  V  G  L  Y  I  P  *  E  A  R  F  R  L  S  S  F  L  V  L  R  F  P  V  L  C  L  H  *  E  K  H  I  S  S  S  S  T  V  F  N  S  I  D  S  F  *  F  S  G  Y  C  S  Q  I  Y  D  L  L  *  G  I  L  I  A  F  *  E  *  L  Y  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44213" stop="44128"/>
                    <exon start="42978" stop="42925"/>
                    <exon start="42443" stop="42397"/>
                    <exon start="42304" stop="42273"/>
                    <exon start="42184" stop="42083"/>
                    <exon start="41901" stop="41834"/>
                    <exon start="41649" stop="41573"/>
                    <exon start="41488" stop="41391"/>
                    <exon start="41107" stop="41037"/>
                    <exon start="40954" stop="40888"/>
                    <exon start="40806" stop="40626"/>
                    <exon start="40393" stop="40251"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMEYDGILLGMGNPLLDISAVVDQDFLNKYEIKPNNAILAEDKHLPMYDEMAAKPTVEYIAGGATQNSIRVAQWMLPFPGATSYMGSVGKDKFGEEMKKNAQDAGVNVHYYEDETAPTGTCAVCVLDGERSLVANLSAANCYKVDHLKRPENWALVEKAKFYYIAGFFLTVSPESIQLVAEHAAANNKIFSMNLSAPFICEFFRDPQEKALPYMDFVFGNETEARTFSKVHGWETDNVEEIALKISQWPKASGHKRITVITQGADPVVVAEDGKVKLFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQEKPIAECVRAGCYASNVIIQRSGCTYPEKPDFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43149" e_stop="43139"/>
            <exon e_start="42978" e_stop="42925"/>
            <exon e_start="42443" e_stop="42397"/>
            <exon e_start="42304" e_stop="42273"/>
            <exon e_start="42184" e_stop="42083"/>
            <exon e_start="41901" e_stop="41834"/>
            <exon e_start="41649" e_stop="41573"/>
            <exon e_start="41488" e_stop="41391"/>
            <exon e_start="41107" e_stop="41037"/>
            <exon e_start="40954" e_stop="40888"/>
            <exon e_start="40806" e_stop="40626"/>
            <exon e_start="40393" e_stop="40095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="0.455"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.916" e_score="0.961"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.455">
            <gDNA_exon_boundary e_start="43149" e_stop="43139" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43138" i_stop="42979" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42978" e_stop="42925" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42924" i_stop="42444" i_length="481"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42443" e_stop="42397" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42396" i_stop="42305" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42304" e_stop="42273" e_length="32"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42272" i_stop="42185" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42184" e_stop="42083" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="42082" i_stop="41902" i_length="181"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="41834" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41833" i_stop="41650" i_length="184"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41649" e_stop="41573" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.674" acc_prob="0.568">
            <gDNA_intron_boundary i_start="41572" i_stop="41489" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41488" e_stop="41391" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="41390" i_stop="41108" i_length="283"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41107" e_stop="41037" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.826" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41036" i_stop="40955" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40954" e_stop="40888" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="40887" i_stop="40807" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="0.961">
            <gDNA_exon_boundary e_start="40806" e_stop="40626" e_length="181"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.916">
            <gDNA_intron_boundary i_start="40625" i_stop="40394" i_length="232"/>
          </intron>
          <exon e_serial="12" e_score="0.933">
            <gDNA_exon_boundary e_start="40393" e_stop="40095" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43149" stop="43139"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43148" stop="43139"/>
              <exon start="42978" stop="42925"/>
              <exon start="42443" stop="42397"/>
              <exon start="42304" stop="42273"/>
              <exon start="42184" stop="42083"/>
              <exon start="41901" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41888" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40626"/>
              <exon start="40393" stop="40364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41881" stop="41834"/>
              <exon start="41649" stop="41573"/>
              <exon start="41488" stop="41391"/>
              <exon start="41107" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41100" stop="41037"/>
              <exon start="40954" stop="40888"/>
              <exon start="40806" stop="40626"/>
              <exon start="40393" stop="40095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415122" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTAAAACT : GTATGAAATCAAGCCGAACAATGCAATTCTTGCAGAGGACAAGCACTTGCCTAT : GTATGATGAAATGGCAGCCAAGCCCACTGTTGAATACATTGCTGGAG : GTGCAACACAAAACTCAATCAGAGTGGCTCAG : TGGATGCTACCATTTCCAGGTGCAACAAGTTACATGGGCTCAGTTGGGAAGGACAAGTTTGGGGAGGAAATGAAGAAAAATGCACAGGATGCTGGCGTCAAT : GTTCATTACTATGAGGATGAGACTGCTCCAACAGGGACTTGTGCTGTTTGTGTGCTAGATGGCGAGAG : GTCATTGGTTGCTAACTTATCAGCTGCAAACTGCTACAAGGTTGACCATTTGAAACGACCAGAGAACTGGGCCTTGG : TTGAGAAAGCCAAATTTTACTATATTGCTGGATTCTTTCTCACCGTTTCTCCAGAATCTATTCAGCTTGTTGCTGAGCACGCAGCAGCCAATAACAAG : ATCTTCTCAATGAACCTTTCAGCACCATTCATCTGCGAGTTCTTCAGGGATCCTCAAGAGAAAGCTTTGCC : GTATATGGACTTTGTATTTGGAAATGAGACAGAAGCAAGAACCTTCTCAAAAGTACACGGCTGGGAG : ACGGATAATGTTGAAGAAATAGCTTTGAAAATCTCGCAATGGCCAAAGGCATCTGGACACAAGAGGATTACTGTTATTACACAGGGTGCTGATCCTGTTGTTGTCGCTGAGGATGGGAAGGTGAAGCTGTTCCCTGTTATACCGTTGCCAAAAGAGAAACTTGTTGACACCAATGGTGCTG : GGGATGCATTTGTTGGAGGATTCTTGTCACAGTTGGTTCAAGAAAAACCTATCGCTGAGTGTGTTAGAGCAGGTTGTTATGCATCAAACGTTATCATCCAGAGGTCGGGTTGTACATACCCTGAGAAGCCAGATTTCGCTTAAGTTCATTCTTAGTTCTTCGTTTTCCTGTGTTATGCCTTCATTGAGAGAAACATATATCATCGAGTTCTACTGTTTTCAACTCGATCGATTCATTCTAATTTTCAGGCTATTGTTCACAAATATATGATTTGTTGTAAGGAATTTTGATTGCCTTTT</gDNA_template>
            <first_frame> L  V  K  L :   Y  E  I  K  P  N  N  A  I  L  A  E  D  K  H  L  P  M :   Y  D  E  M  A  A  K  P  T  V  E  Y  I  A  G   : G  A  T  Q  N  S  I  R  V  A  Q  :  W  M  L  P  F  P  G  A  T  S  Y  M  G  S  V  G  K  D  K  F  G  E  E  M  K  K  N  A  Q  D  A  G  V  N  :  V  H  Y  Y  E  D  E  T  A  P  T  G  T  C  A  V  C  V  L  D  G  E  R :   S  L  V  A  N  L  S  A  A  N  C  Y  K  V  D  H  L  K  R  P  E  N  W  A  L   : V  E  K  A  K  F  Y  Y  I  A  G  F  F  L  T  V  S  P  E  S  I  Q  L  V  A  E  H  A  A  A  N  N  K  :  I  F  S  M  N  L  S  A  P  F  I  C  E  F  F  R  D  P  Q  E  K  A  L  P :   Y  M  D  F  V  F  G  N  E  T  E  A  R  T  F  S  K  V  H  G  W  E  :  T  D  N  V  E  E  I  A  L  K  I  S  Q  W  P  K  A  S  G  H  K  R  I  T  V  I  T  Q  G  A  D  P  V  V  V  A  E  D  G  K  V  K  L  F  P  V  I  P  L  P  K  E  K  L  V  D  T  N  G  A   : G  D  A  F  V  G  G  F  L  S  Q  L  V  Q  E  K  P  I  A  E  C  V  R  A  G  C  Y  A  S  N  V  I  I  Q  R  S  G  C  T  Y  P  E  K  P  D  F  A  *  V  H  S  *  F  F  V  F  L  C  Y  A  F  I  E  R  N  I  Y  H  R  V  L  L  F  S  T  R  S  I  H  S  N  F  Q  A  I  V  H  K  Y  M  I  C  C  K  E  F  *  L  P  F </first_frame>
            <second_frame>  W  *  N   : C  M  K  S  S  R  T  M  Q  F  L  Q  R  T  S  T  C  L   : C  M  M  K  W  Q  P  S  P  L  L  N  T  L  L  E  :  V  Q  H  K  T  Q  S  E  W  L  S :   G  C  Y  H  F  Q  V  Q  Q  V  T  W  A  Q  L  G  R  T  S  L  G  R  K  *  R  K  M  H  R  M  L  A  S  M :   F  I  T  M  R  M  R  L  L  Q  Q  G  L  V  L  F  V  C  *  M  A  R   : G  H  W  L  L  T  Y  Q  L  Q  T  A  T  R  L  T  I  *  N  D  Q  R  T  G  P  W  :  L  R  K  P  N  F  T  I  L  L  D  S  F  S  P  F  L  Q  N  L  F  S  L  L  L  S  T  Q  Q  P  I  T  R :   S  S  Q  *  T  F  Q  H  H  S  S  A  S  S  S  G  I  L  K  R  K  L  C   : R  I  W  T  L  Y  L  E  M  R  Q  K  Q  E  P  S  Q  K  Y  T  A  G  R :   R  I  M  L  K  K  *  L  *  K  S  R  N  G  Q  R  H  L  D  T  R  G  L  L  L  L  H  R  V  L  I  L  L  L  S  L  R  M  G  R  *  S  C  S  L  L  Y  R  C  Q  K  R  N  L  L  T  P  M  V  L  :  G  M  H  L  L  E  D  S  C  H  S  W  F  K  K  N  L  S  L  S  V  L  E  Q  V  V  M  H  Q  T  L  S  S  R  G  R  V  V  H  T  L  R  S  Q  I  S  L  K  F  I  L  S  S  S  F  S  C  V  M  P  S  L  R  E  T  Y  I  I  E  F  Y  C  F  Q  L  D  R  F  I  L  I  F  R  L  L  F  T  N  I  *  F  V  V  R  N  F  D  C  L   </second_frame>
            <third_frame>   G  K  T  :  V  *  N  Q  A  E  Q  C  N  S  C  R  G  Q  A  L  A  Y  :  V  *  *  N  G  S  Q  A  H  C  *  I  H  C  W  R :   C  N  T  K  L  N  Q  S  G  S   : V  D  A  T  I  S  R  C  N  K  L  H  G  L  S  W  E  G  Q  V  W  G  G  N  E  E  K  C  T  G  C  W  R  Q   : C  S  L  L  *  G  *  D  C  S  N  R  D  L  C  C  L  C  A  R  W  R  E  :  V  I  G  C  *  L  I  S  C  K  L  L  Q  G  *  P  F  E  T  T  R  E  L  G  L  G :   *  E  S  Q  I  L  L  Y  C  W  I  L  S  H  R  F  S  R  I  Y  S  A  C  C  *  A  R  S  S  Q  *  Q   : D  L  L  N  E  P  F  S  T  I  H  L  R  V  L  Q  G  S  S  R  E  S  F  A  :  V  Y  G  L  C  I  W  K  *  D  R  S  K  N  L  L  K  S  T  R  L  G   : D  G  *  C  *  R  N  S  F  E  N  L  A  M  A  K  G  I  W  T  Q  E  D  Y  C  Y  Y  T  G  C  *  S  C  C  C  R  *  G  W  E  G  E  A  V  P  C  Y  T  V  A  K  R  E  T  C  *  H  Q  W  C  W :   G  C  I  C  W  R  I  L  V  T  V  G  S  R  K  T  Y  R  *  V  C  *  S  R  L  L  C  I  K  R  Y  H  P  E  V  G  L  Y  I  P  *  E  A  R  F  R  L  S  S  F  L  V  L  R  F  P  V  L  C  L  H  *  E  K  H  I  S  S  S  S  T  V  F  N  S  I  D  S  F  *  F  S  G  Y  C  S  Q  I  Y  D  L  L  *  G  I  L  I  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43149" stop="43139"/>
                    <exon start="42978" stop="42925"/>
                    <exon start="42443" stop="42397"/>
                    <exon start="42304" stop="42273"/>
                    <exon start="42184" stop="42083"/>
                    <exon start="41901" stop="41834"/>
                    <exon start="41649" stop="41573"/>
                    <exon start="41488" stop="41391"/>
                    <exon start="41107" stop="41037"/>
                    <exon start="40954" stop="40888"/>
                    <exon start="40806" stop="40626"/>
                    <exon start="40393" stop="40251"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVKLYEIKPNNAILAEDKHLPMYDEMAAKPTVEYIAGGATQNSIRVAQWMLPFPGATSYMGSVGKDKFGEEMKKNAQDAGVNVHYYEDETAPTGTCAVCVLDGERSLVANLSAANCYKVDHLKRPENWALVEKAKFYYIAGFFLTVSPESIQLVAEHAAANNKIFSMNLSAPFICEFFRDPQEKALPYMDFVFGNETEARTFSKVHGWETDNVEEIALKISQWPKASGHKRITVITQGADPVVVAEDGKVKLFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQEKPIAECVRAGCYASNVIIQRSGCTYPEKPDFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55125" PGL_stop="45521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48812" e_stop="48246"/>
            <exon e_start="47549" e_stop="45528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48812" e_stop="48246" e_length="567"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="47549" e_stop="45528" e_length="2022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48246"/>
              <exon start="47549" stop="47359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48806" stop="48246"/>
              <exon start="47549" stop="47404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48802" stop="48338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48798" stop="48246"/>
              <exon start="47549" stop="47522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48794" stop="48246"/>
              <exon start="47549" stop="47277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48794" stop="48246"/>
              <exon start="47549" stop="47305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48246"/>
              <exon start="47549" stop="47299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48246"/>
              <exon start="47549" stop="47367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48787" stop="48246"/>
              <exon start="47549" stop="47280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="48246"/>
              <exon start="47549" stop="47250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="48246"/>
              <exon start="47549" stop="47270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="48246"/>
              <exon start="47549" stop="47343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="48246"/>
              <exon start="47549" stop="47393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="48339"/>
            </gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E604985" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E355011" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG : GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCA</gDNA_template>
            <first_frame> H  N  Q  K  K  *  *  *  Y  T  N  H  S  S  Q  H  I  F  F  Y  I  Y  K  *  N  S  H  F  F  S  S  P  N  S  P  K  *  N  F  S  I  T  N  Q  T  I  F  C  W  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  Y  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  S  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  Q  :  V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M  S  I  Q  F  F  C  S  I  K  F  L  L  F  Y  L  K  H  *  Q  L  Q  A </first_frame>
            <second_frame>  I  T  K  K  N  N  N  N  T  L  I  I  V  H  N  I  F  F  F  I  Y  I  N  K  I  P  I  F  S  L  L  Q  I  L  L  S  K  I  S  P  L  Q  I  K  P  F  F  V  G  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L  C  L  F  N  S  S  V  Q  S  S  F  S  C  F  I  *  S  T  N  N  C  R   </second_frame>
            <third_frame>   *  P  K  K  I  I  I  I  H  *  S  *  F  T  T  Y  F  F  L  Y  I  *  I  K  F  P  F  F  L  F  S  K  F  S  *  V  K  F  L  H  Y  K  S  N  H  F  L  L  V  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  L  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  E  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  S   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  V  Y  S  I  L  L  F  N  Q  V  S  L  V  L  F  K  A  L  T  I  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48811" stop="48246"/>
                    <exon start="47549" stop="45800"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2313</number_coding_nucleotides>
                  <number_encoded_amino_acids>771</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKKNNNNTLIIVHNIFFFIYINKIPIFSLLQILLSKISPLQIKPFFVGPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48812" e_stop="48246"/>
            <exon e_start="47549" e_stop="45595"/>
            <exon e_start="45530" e_stop="45521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.893" e_score="1.000"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48812" e_stop="48246" e_length="567"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47549" e_stop="45595" e_length="1955"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.893">
            <gDNA_intron_boundary i_start="45594" i_stop="45531" i_length="64"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="45530" e_stop="45521" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48246"/>
              <exon start="47549" stop="47359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48806" stop="48246"/>
              <exon start="47549" stop="47404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48802" stop="48338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48798" stop="48246"/>
              <exon start="47549" stop="47522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202257" strand="+"/>
          </PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47040" stop="46443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47038" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47011" stop="46318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47005" stop="46633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46983" stop="46501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46971" stop="46620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46966" stop="46378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46965" stop="46462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46948" stop="46320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46947" stop="46403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46946" stop="46261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46909" stop="46180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46903" stop="46540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46902" stop="46172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46893" stop="46460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46875" stop="46685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46853" stop="46020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46829" stop="46146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46829" stop="46266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46822" stop="46275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46820" stop="46292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46814" stop="46107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46809" stop="46328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46805" stop="45996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46790" stop="46085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46786" stop="46013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46712" stop="46099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46616" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46609" stop="46204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46606" stop="45936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46605" stop="46073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46605" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46601" stop="46110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46592" stop="45976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46587" stop="46105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46587" stop="46105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46586" stop="46105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46582" stop="46335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46552" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46550" stop="46199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46541" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46534" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46515" stop="45792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46513" stop="46076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46512" stop="45942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46512" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46506" stop="45657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46487" stop="46104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="45930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="46168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46468" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46468" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46460" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46458" stop="45907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46429" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46424" stop="45794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46410" stop="45659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46402" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46395" stop="45946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46384" stop="46083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46358" stop="45621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46350" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46310" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46295" stop="45854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46261" stop="45827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46255" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="45647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46190" stop="45741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46179" stop="45605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46048" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45968" stop="45595"/>
              <exon start="45530" stop="45521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45932" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAACCAAAAAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG : GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTAT : GCACTCAAAA</gDNA_template>
            <first_frame> H  N  Q  K  K  *  *  *  Y  T  N  H  S  S  Q  H  I  F  F  Y  I  Y  K  *  N  S  H  F  F  S  S  P  N  S  P  K  *  N  F  S  I  T  N  Q  T  I  F  C  W  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  Y  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  S  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  Q  :  V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M :   H  S  K </first_frame>
            <second_frame>  I  T  K  K  N  N  N  N  T  L  I  I  V  H  N  I  F  F  F  I  Y  I  N  K  I  P  I  F  S  L  L  Q  I  L  L  S  K  I  S  P  L  Q  I  K  P  F  F  V  G  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L   : C  T  Q   </second_frame>
            <third_frame>   *  P  K  K  I  I  I  I  H  *  S  *  F  T  T  Y  F  F  L  Y  I  *  I  K  F  P  F  F  L  F  S  K  F  S  *  V  K  F  L  H  Y  K  S  N  H  F  L  L  V  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  L  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  E  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  S   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  :  A  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48811" stop="48246"/>
                    <exon start="47549" stop="45800"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2313</number_coding_nucleotides>
                  <number_encoded_amino_acids>771</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKKNNNNTLIIVHNIFFFIYINKIPIFSLLQILLSKISPLQIKPFFVGPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55125" e_stop="54977"/>
            <exon e_start="48631" e_stop="48246"/>
            <exon e_start="47549" e_stop="45528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.832"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.925"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.832">
            <gDNA_exon_boundary e_start="55125" e_stop="54977" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54976" i_stop="48632" i_length="6345"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="48631" e_stop="48246" e_length="386"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="47549" e_stop="45528" e_length="2022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55125" stop="54977"/>
              <exon start="48631" stop="48246"/>
              <exon start="47549" stop="47431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48551" stop="48246"/>
              <exon start="47549" stop="47102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48546" stop="48246"/>
              <exon start="47549" stop="47133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48526" stop="48246"/>
              <exon start="47549" stop="47174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48492" stop="48246"/>
              <exon start="47549" stop="47208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="46552" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46550" stop="46199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46541" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46534" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46515" stop="45792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46513" stop="46076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46512" stop="45942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46512" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46506" stop="45657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46487" stop="46104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="45930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="46168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46468" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46468" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46467" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46460" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46458" stop="45907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46429" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46424" stop="45794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46410" stop="45659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46402" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46395" stop="45946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46385" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46384" stop="46083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46358" stop="45621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46350" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46310" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46299" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46295" stop="45854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46261" stop="45827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424771" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46255" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46244" stop="45564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="45647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46190" stop="45741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46179" stop="45605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46146" stop="45528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46136" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46112" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46048" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572320" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46024" stop="45592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46011" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46000" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45992" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45988" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45983" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45970" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45941" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45932" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45885" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45832" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTATAAGTTCACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAA : GTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG : GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCA</gDNA_template>
            <first_frame> F  L  *  V  H  N  I  F  F  V  I  *  K  *  S  L  A  I  L  F  S  V  K  F  L  H  Y  K  S  N  H  F  L  L  V  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K :   L  M  E  K  L  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  E  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  S   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  V  Y  S  I  L  L  F  N  Q  V  S  L  V  L  F  K  A  L  T  I  A  G  </first_frame>
            <second_frame>  F  Y  K  F  T  T  F  F  L  L  Y  K  N  N  L  *  P  F  C  F  Q  *  N  F  S  I  T  N  Q  T  I  F  C  W  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R   : S  *  W  R  S  Y  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  S  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  Q  :  V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M  S  I  Q  F  F  C  S  I  K  F  L  L  F  Y  L  K  H  *  Q  L  Q  A </second_frame>
            <third_frame>   F  I  S  S  Q  H  F  F  C  Y  I  K  I  I  S  S  H  F  V  F  S  K  I  S  P  L  Q  I  K  P  F  F  V  G  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  :  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L  C  L  F  N  S  S  V  Q  S  S  F  S  C  F  I  *  S  T  N  N  C  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55123" stop="54977"/>
                    <exon start="48631" stop="48246"/>
                    <exon start="47549" stop="45800"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2280</number_coding_nucleotides>
                  <number_encoded_amino_acids>760</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISSQHFFCYIKIISSHFVFSKISPLQIKPFFVGPMASSIVQNGHVNGEVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47551" e_stop="45528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="47551" e_stop="45528" e_length="2024"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47551" stop="47254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47549" stop="46828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47549" stop="47015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47549" stop="47106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47549" stop="47250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47548" stop="46794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47533" stop="46894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47518" stop="46828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47517" stop="46845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47504" stop="46849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455947" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46410" stop="45659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46402" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46395" stop="45946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46385" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46384" stop="46083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46358" stop="45621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46350" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46310" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46299" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46295" stop="45854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46261" stop="45827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424771" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46255" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46244" stop="45564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="45647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46190" stop="45741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46179" stop="45605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46146" stop="45528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46136" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46112" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46048" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572320" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46024" stop="45592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46011" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46000" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45992" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45988" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45983" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45970" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45941" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45932" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45885" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45832" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCA</gDNA_template>
            <first_frame> R  F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L  C  L  F  N  S  S  V  Q  S  S  F  S  C  F  I  *  S  T  N  N  C  R   </first_frame>
            <second_frame>  G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  V  Y  S  I  L  L  F  N  Q  V  S  L  V  L  F  K  A  L  T  I  A  G  </second_frame>
            <third_frame>   V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M  S  I  Q  F  F  C  S  I  K  F  L  L  F  Y  L  K  H  *  Q  L  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47551" stop="45800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1749</number_coding_nucleotides>
                  <number_encoded_amino_acids>583</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="48802" e_stop="48246"/>
            <exon e_start="47549" e_stop="47499"/>
            <exon e_start="47369" e_stop="45528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="48802" e_stop="48246" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48245" i_stop="47550" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47549" e_stop="47499" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47498" i_stop="47370" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="47369" e_stop="45528" e_length="1842"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48802" stop="48338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48798" stop="48246"/>
              <exon start="47549" stop="47522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48785" stop="48339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48777" stop="48292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48775" stop="48246"/>
              <exon start="47549" stop="47499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="48345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48766" stop="48290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48761" stop="48274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="48341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="48341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48427" stop="48246"/>
              <exon start="47549" stop="47499"/>
              <exon start="47369" stop="47022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47358" stop="46588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47356" stop="46886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47348" stop="46916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47347" stop="46858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47338" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47336" stop="46866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47335" stop="46777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47331" stop="46774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47330" stop="46802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47314" stop="46784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47304" stop="46551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47293" stop="46654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47288" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47269" stop="46710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47268" stop="46701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47239" stop="46775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47238" stop="46681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47232" stop="46640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47229" stop="46646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47228" stop="46776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47217" stop="46552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47212" stop="46787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47208" stop="46850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482299" strand="+"/>
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            <gDNA_exon_coordinates>
              <exon start="46011" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46000" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45992" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45988" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45983" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45970" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45941" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45932" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45885" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45832" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAATAATAATACACTAATCATAGTTCACAACATATTTTTTTTTATATATATAAATAAAATTCCCATTTTTTCTCTTCTCCAAATTCTCCTAAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGAGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG : GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTT : GCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCA</gDNA_template>
            <first_frame> K  N  N  N  N  T  L  I  I  V  H  N  I  F  F  F  I  Y  I  N  K  I  P  I  F  S  L  L  Q  I  L  L  S  K  I  S  P  L  Q  I  K  P  F  F  V  G  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L :   P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L  C  L  F  N  S  S  V  Q  S  S  F  S  C  F  I  *  S  T  N  N  C  R   </first_frame>
            <second_frame>  K  I  I  I  I  H  *  S  *  F  T  T  Y  F  F  L  Y  I  *  I  K  F  P  F  F  L  F  S  K  F  S  *  V  K  F  L  H  Y  K  S  N  H  F  L  L  V  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  L  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  E  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  S   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L   : C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  V  Y  S  I  L  L  F  N  Q  V  S  L  V  L  F  K  A  L  T  I  A  G  </second_frame>
            <third_frame>   K  *  *  *  Y  T  N  H  S  S  Q  H  I  F  F  Y  I  Y  K  *  N  S  H  F  F  S  S  P  N  S  P  K  *  N  F  S  I  T  N  Q  T  I  F  C  W  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  Y  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  S  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  Q  :  V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  :  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M  S  I  Q  F  F  C  S  I  K  F  L  L  F  Y  L  K  H  *  Q  L  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48802" stop="48246"/>
                    <exon start="47549" stop="47499"/>
                    <exon start="47369" stop="45800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2175</number_coding_nucleotides>
                  <number_encoded_amino_acids>725</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNNNNTLIIVHNIFFFIYINKIPIFSLLQILLSKISPLQIKPFFVGPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="53981" e_stop="53862"/>
            <exon e_start="47267" e_stop="47071"/>
            <exon e_start="46809" e_stop="45528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.831" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="53981" e_stop="53862" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.831" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53861" i_stop="47268" i_length="6594"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="47267" e_stop="47071" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47070" i_stop="46810" i_length="261"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="46809" e_stop="45528" e_length="1282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53981" stop="53862"/>
              <exon start="47267" stop="47071"/>
              <exon start="46809" stop="46547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53981" stop="53862"/>
              <exon start="47267" stop="47071"/>
              <exon start="46809" stop="46689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46809" stop="46328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46805" stop="45996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46790" stop="46085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46786" stop="46013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46712" stop="46099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46616" stop="46190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46609" stop="46204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46606" stop="45936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46605" stop="46073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46605" stop="46197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46601" stop="46110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46592" stop="45976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46587" stop="46105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46587" stop="46105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46586" stop="46105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46582" stop="46335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46552" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46550" stop="46199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46541" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46534" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46515" stop="45792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46513" stop="46076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46512" stop="45942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46512" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46506" stop="45657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46487" stop="46104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="45930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="46168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46468" stop="45851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46468" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46467" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46460" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46458" stop="45907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46429" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46424" stop="45794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46410" stop="45659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46402" stop="45749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46400" stop="45963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46395" stop="45946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46385" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46384" stop="46083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46358" stop="45621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46350" stop="45824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46310" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46299" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46295" stop="45854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46261" stop="45827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424771" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46258" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46255" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46244" stop="45564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="45647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46190" stop="45741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46179" stop="45605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46178" stop="45649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46146" stop="45528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46136" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46112" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46048" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572320" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46024" stop="45592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46011" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46000" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45992" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45988" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45983" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45970" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45941" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45932" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45885" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45832" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAA : TGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGA : TGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCTTCTGTTCAATCAAGTTTCTCTTGTTTTATTTAAAGCACTAACAATTGCAGGCA</gDNA_template>
            <first_frame> V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  Q  L  L  C  Q  R  S  S  E  A  T  *  N  G  S  S  S  K  T  K  :  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D :   E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M  S  I  Q  F  F  C  S  I  K  F  L  L  F  Y  L  K  H  *  Q  L  Q  A </first_frame>
            <second_frame>  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  E  A  Q  K  L  H  E  M  D  P  L  Q  K  P  N :   G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V   : M  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L  C  L  F  N  S  S  V  Q  S  S  F  S  C  F  I  *  S  T  N  N  C  R   </second_frame>
            <third_frame>   *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  A  A  L  M  S  K  K  L  R  S  Y  M  K  W  I  L  F  K  N  Q   : M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  :  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  V  Y  S  I  L  L  F  N  Q  V  S  L  V  L  F  K  A  L  T  I  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53980" stop="53862"/>
                    <exon start="47267" stop="47071"/>
                    <exon start="46809" stop="45800"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKHHPGQIEAAAIMEHILDGSSYVKEAQKLHEMDPLQKPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="55123" e_stop="54603"/>
            <exon e_start="54500" e_stop="53072"/>
            <exon e_start="46138" e_stop="45581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55123" e_stop="54603" e_length="521"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="54500" e_stop="53072" e_length="1429"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53071" i_stop="46139" i_length="6933"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="46138" e_stop="45581" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55123" stop="54603"/>
              <exon start="54500" stop="54265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55113" stop="54610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55112" stop="54603"/>
              <exon start="54500" stop="54468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55107" stop="54603"/>
              <exon start="54500" stop="54489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55102" stop="54758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="54603"/>
              <exon start="54500" stop="54317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="54603"/>
              <exon start="54500" stop="54452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55076" stop="54603"/>
              <exon start="54500" stop="54468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55072" stop="54603"/>
              <exon start="54500" stop="54328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55061" stop="54603"/>
              <exon start="54500" stop="54316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54942" stop="54603"/>
              <exon start="54500" stop="54317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54897" stop="54603"/>
              <exon start="54500" stop="54343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54884" stop="54603"/>
              <exon start="54500" stop="54374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54874" stop="54603"/>
              <exon start="54500" stop="54053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54874" stop="54603"/>
              <exon start="54500" stop="54159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54799" stop="54603"/>
              <exon start="54500" stop="54053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54709" stop="54603"/>
              <exon start="54500" stop="54237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54500" stop="54201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54149" stop="53485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54142" stop="53614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54115" stop="53633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54092" stop="53597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54081" stop="53364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54044" stop="53588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54042" stop="53254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53945" stop="53304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53916" stop="53542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53765" stop="53149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53730" stop="53297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53730" stop="53380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53625" stop="53153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53194" stop="53072"/>
              <exon start="46138" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46136" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46112" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46048" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572320" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46025" stop="45611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46024" stop="45592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46011" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46000" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45992" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45988" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45983" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45970" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45941" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45932" stop="45618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45885" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45832" stop="45586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATAAGTTCACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG : GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAAT : GGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTAAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATCGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGCTTGCCAGAAAAAAAGACCAGTTGTGAATGCTTGTCTAGTGCTATTTTTCAGATTCTTTTTTTGCTTTATGGTGAATTACTATCATAATATGTTGTGAACTTACATCTTTTTTGGTTAACTTGAGAGAGTGTTAAACTCTCTTAAATATGAATATGTCTCTTTTCAGTAAAAAACTTAAATGAAAAGTGACAGTGTGCTTATGTCTATTCAATTCT</gDNA_template>
            <first_frame> F  I  S  S  Q  H  F  F  C  Y  I  K  I  I  S  S  H  F  V  F  S  K  I  S  P  L  Q  I  K  P  F  F  V  G  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  H  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  E  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  F  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  K  N  A  V  K  N  T  V  S  Q  V  A  K  K  T  L  A  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  Q  V  V  E  R  E  Y  L  F  T  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  :  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  L  A  R  K  K  D  Q  L  *  M  L  V  *  C  Y  F  S  D  S  F  F  A  L  W  *  I  T  I  I  I  C  C  E  L  T  S  F  L  V  N  L  R  E  C  *  T  L  L  N  M  N  M  S  L  F  S  K  K  L  K  *  K  V  T  V  C  L  C  L  F  N  S </first_frame>
            <second_frame>  L  *  V  H  N  I  F  F  V  I  *  K  *  S  L  A  I  L  F  S  V  K  F  L  H  Y  K  S  N  H  F  L  L  V  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  L  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  V  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  L   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  T  L  C  F  K  A  T  L  A  L  D  L  K  S  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  S  V  G  R  S  L  P  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  I  Q  R  L  L  D  L  M  A  R  S  L  M  L  R  K  R  F  M  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  E  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  A  A  L  M  S  K  K  L  R  S  Y  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  R  S  E  H  L  H  N  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  S  R  G  K  S  T  Q  *  T  T  I  H  *  L  T  F  Q  E  T  R  P  Y  M  V  A  T  S  K  E  P  L  S  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  S  R  S  L  S  T  T  I  T  T  M  D  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  T  M  V  S  K  E  L  K  L  R  W  L  L  T  A  R  N  F  N  S  L  Q  I  R  *  L  T  T  S  K  V  P  S  N  T  T  K  M  *  I  R  W  A  *  S  Q  Q  G  K  Q  L  R  L  L  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  R  I  *  R  M  L  *  K  T  L  *  A  K  *  P  K  R  L  W  Q  W  V  L  M  A  N  F  I  Q  Q  D  S  A  K  R  N  C  Y  K  W  W  K  G  N  I  C  L  P  M  L  M  T  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M :   V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  S  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  P  E  K  K  T  S  C  E  C  L  S  S  A  I  F  Q  I  L  F  L  L  Y  G  E  L  L  S  *  Y  V  V  N  L  H  L  F  W  L  T  *  E  S  V  K  L  S  *  I  *  I  C  L  F  S  V  K  N  L  N  E  K  *  Q  C  A  Y  V  Y  S  I   </second_frame>
            <third_frame>   Y  K  F  T  T  F  F  L  L  Y  K  N  N  L  *  P  F  C  F  Q  *  N  F  S  I  T  N  Q  T  I  F  C  W  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  Y  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  C  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  *  :  V  L  K  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  H  F  A  S  R  L  L  W  H  *  I  *  N  L  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  P  W  D  D  H  C  L  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  F  K  G  C  W  T  *  W  R  E  A  *  C  *  G  S  V  S  C  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  N  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  Q  L  L  C  Q  R  S  S  E  A  T  *  N  G  S  S  S  K  T  K  A  R  S  L  C  A  P  N  I  S  T  M  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  R  E  G  N  Q  L  S  E  R  Q  S  I  D  *  R  F  K  K  Q  G  L  T  W  W  Q  L  P  R  N  P  Y  R  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  L  G  A  C  Q  R  L  L  Q  Q  W  I  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  F  Q  R  S  *  N  C  D  G  F  L  L  L  G  T  S  I  P  C  K  S  G  D  *  P  R  P  K  C  R  A  T  Q  P  R  C  E  F  V  G  L  N  L  S  K  E  N  S  *  G  C  *  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  E  A  F  G  G  E  F  E  E  C  C  E  K  H  C  K  P  S  S  Q  K  D  S  G  N  G  C  *  W  R  T  S  S  S  K  I  L  R  K  G  I  A  T  S  G  G  K  G  I  F  V  Y  L  C  *  *  P  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E   : W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  K  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  R  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  A  C  Q  K  K  R  P  V  V  N  A  C  L  V  L  F  F  R  F  F  F  C  F  M  V  N  Y  Y  H  N  M  L  *  T  Y  I  F  F  G  *  L  E  R  V  L  N  S  L  K  Y  E  Y  V  S  F  Q  *  K  T  *  M  K  S  D  S  V  L  M  S  I  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55123" stop="54603"/>
                    <exon start="54500" stop="53072"/>
                    <exon start="46138" stop="45800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2286</number_coding_nucleotides>
                  <number_encoded_amino_acids>762</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISSQHFFCYIKIISSHFVFSKISPLQIKPFFVGPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFHVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKKTLAMGANGELHPARFCEKELLQVVEREYLFTYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="55123" e_stop="54603"/>
            <exon e_start="54500" e_stop="52594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55123" e_stop="54603" e_length="521"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54602" i_stop="54501" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="54500" e_stop="52594" e_length="1907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55123" stop="54603"/>
              <exon start="54500" stop="54265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55113" stop="54610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55112" stop="54603"/>
              <exon start="54500" stop="54468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55107" stop="54603"/>
              <exon start="54500" stop="54489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55102" stop="54758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="54603"/>
              <exon start="54500" stop="54317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55096" stop="54603"/>
              <exon start="54500" stop="54452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55076" stop="54603"/>
              <exon start="54500" stop="54468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55072" stop="54603"/>
              <exon start="54500" stop="54328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55061" stop="54603"/>
              <exon start="54500" stop="54316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54942" stop="54603"/>
              <exon start="54500" stop="54317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54897" stop="54603"/>
              <exon start="54500" stop="54343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54884" stop="54603"/>
              <exon start="54500" stop="54374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54874" stop="54603"/>
              <exon start="54500" stop="54053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54874" stop="54603"/>
              <exon start="54500" stop="54159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54799" stop="54603"/>
              <exon start="54500" stop="54053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54709" stop="54603"/>
              <exon start="54500" stop="54237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54500" stop="54201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54149" stop="53485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54142" stop="53614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54115" stop="53633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54092" stop="53597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54081" stop="53364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54044" stop="53588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54042" stop="53254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53945" stop="53304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53916" stop="53542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53765" stop="53149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53749" stop="52910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53730" stop="53297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53730" stop="53380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53693" stop="52998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53625" stop="53153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53586" stop="52954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53571" stop="52594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53539" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53516" stop="52921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53513" stop="53057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53393" stop="52900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53351" stop="52920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53136" stop="52688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATAAGTTCACAACATTTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTGTTTTCAGTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTGGTCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCTATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATTAG : GTTCTTAAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAACACTTTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATCTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTCCGTGGGACGATCACTGCCTCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAATTCAAAGGCTGTTGGACCTAATGGCGAGAAGCTTAATGCTGAGGAAGCGTTTCATGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGAACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAAGAAGCTCAGAAGCTACATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCGCTCCGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATCGAGAGGGAAATCAACTCAGTGAACGACAATCCATTGATTGACGTTTCAAGAAACAAGGCCTTACATGGTGGCAACTTCCAAGGAACCCCTATCGGTGTGTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTCTCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGACTATGGTTTCAAAGGAGCTGAAATTGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAATTTGAAGAATGCTGTGAAAAACACTGTAAGCCAAGTAGCCAAAAAGACTCTGGCAATGGGTGCTAATGGCGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCTACAAGTGGTGGAAAGGGAATATTTGTTTACCTATGCTGATGACCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGTGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGAAACCCTGCAATTCCTAACAGGATCACAGAATGTAGATCATATCCATTGTACAGGTTGGTTAGACAAGAAGTTGGAACAGAACTATTGACAGGTGAAAAAGTTCGATCGCCCGGTGAGGAGATTGATAAGGTATTCACAGCATTTTGCAATGGACAAATCATTGATCCATTGTTGGAGTGTCTCAAAAGCTGGAATGGTGCTCCTATTCCAATCTGCTAAATGTTTGTCAACTGTTACTTTCAAATTCTTTTTTTTACCTTACAGTAATTTACTATAATCATAATATCATTTTATTGTATTTTGGACCGTATGTAATATTGTCTATCAATATAAGATTTTTGCTATTAGATTGTTTAATCTTAAAAACAACATATTA</gDNA_template>
            <first_frame> F  I  S  S  Q  H  F  F  C  Y  I  K  I  I  S  S  H  F  V  F  S  K  I  S  P  L  Q  I  K  P  F  F  V  G  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  H  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  E  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  F  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  K  N  A  V  K  N  T  V  S  Q  V  A  K  K  T  L  A  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  Q  V  V  E  R  E  Y  L  F  T  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  V  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  V  G  T  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  F  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  I  P  I  C  *  M  F  V  N  C  Y  F  Q  I  L  F  F  T  L  Q  *  F  T  I  I  I  I  S  F  Y  C  I  L  D  R  M  *  Y  C  L  S  I  *  D  F  C  Y  *  I  V  *  S  *  K  Q  H  I  </first_frame>
            <second_frame>  L  *  V  H  N  I  F  F  V  I  *  K  *  S  L  A  I  L  F  S  V  K  F  L  H  Y  K  S  N  H  F  L  L  V  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  L  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  V  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  L   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  T  L  C  F  K  A  T  L  A  L  D  L  K  S  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  S  V  G  R  S  L  P  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  I  Q  R  L  L  D  L  M  A  R  S  L  M  L  R  K  R  F  M  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  E  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  A  A  L  M  S  K  K  L  R  S  Y  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  R  S  E  H  L  H  N  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  S  R  G  K  S  T  Q  *  T  T  I  H  *  L  T  F  Q  E  T  R  P  Y  M  V  A  T  S  K  E  P  L  S  V  C  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  S  R  S  L  S  T  T  I  T  T  M  D  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  T  M  V  S  K  E  L  K  L  R  W  L  L  T  A  R  N  F  N  S  L  Q  I  R  *  L  T  T  S  K  V  P  S  N  T  T  K  M  *  I  R  W  A  *  S  Q  Q  G  K  Q  L  R  L  L  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  R  I  *  R  M  L  *  K  T  L  *  A  K  *  P  K  R  L  W  Q  W  V  L  M  A  N  F  I  Q  Q  D  S  A  K  R  N  C  Y  K  W  W  K  G  N  I  C  L  P  M  L  M  T  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  C  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  E  T  L  Q  F  L  T  G  S  Q  N  V  D  H  I  H  C  T  G  W  L  D  K  K  L  E  Q  N  Y  *  Q  V  K  K  F  D  R  P  V  R  R  L  I  R  Y  S  Q  H  F  A  M  D  K  S  L  I  H  C  W  S  V  S  K  A  G  M  V  L  L  F  Q  S  A  K  C  L  S  T  V  T  F  K  F  F  F  L  P  Y  S  N  L  L  *  S  *  Y  H  F  I  V  F  W  T  V  C  N  I  V  Y  Q  Y  K  I  F  A  I  R  L  F  N  L  K  N  N  I  L </second_frame>
            <third_frame>   Y  K  F  T  T  F  F  L  L  Y  K  N  N  L  *  P  F  C  F  Q  *  N  F  S  I  T  N  Q  T  I  F  C  W  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  Y  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  C  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  *  :  V  L  K  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  H  F  A  S  R  L  L  W  H  *  I  *  N  L  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  P  W  D  D  H  C  L  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  F  K  G  C  W  T  *  W  R  E  A  *  C  *  G  S  V  S  C  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  N  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  Q  L  L  C  Q  R  S  S  E  A  T  *  N  G  S  S  S  K  T  K  A  R  S  L  C  A  P  N  I  S  T  M  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  R  E  G  N  Q  L  S  E  R  Q  S  I  D  *  R  F  K  K  Q  G  L  T  W  W  Q  L  P  R  N  P  Y  R  C  V  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  L  G  A  C  Q  R  L  L  Q  Q  W  I  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  F  Q  R  S  *  N  C  D  G  F  L  L  L  G  T  S  I  P  C  K  S  G  D  *  P  R  P  K  C  R  A  T  Q  P  R  C  E  F  V  G  L  N  L  S  K  E  N  S  *  G  C  *  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  E  A  F  G  G  E  F  E  E  C  C  E  K  H  C  K  P  S  S  Q  K  D  S  G  N  G  C  *  W  R  T  S  S  S  K  I  L  R  K  G  I  A  T  S  G  G  K  G  I  F  V  Y  L  C  *  *  P  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  E  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  K  P  C  N  S  *  Q  D  H  R  M  *  I  I  S  I  V  Q  V  G  *  T  R  S  W  N  R  T  I  D  R  *  K  S  S  I  A  R  *  G  D  *  *  G  I  H  S  I  L  Q  W  T  N  H  *  S  I  V  G  V  S  Q  K  L  E  W  C  S  Y  S  N  L  L  N  V  C  Q  L  L  L  S  N  S  F  F  Y  L  T  V  I  Y  Y  N  H  N  I  I  L  L  Y  F  G  P  Y  V  I  L  S  I  N  I  R  F  L  L  L  D  C  L  I  L  K  T  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55123" stop="54603"/>
                    <exon start="54500" stop="52751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2268</number_coding_nucleotides>
                  <number_encoded_amino_acids>756</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISSQHFFCYIKIISSHFVFSKISPLQIKPFFVGPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFHVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKNAVKNTVSQVAKKTLAMGANGELHPARFCEKELLQVVEREYLFTYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQEVGTELLTGEKVRSPGEEIDKVFTAFCNGQIIDPLLECLKSWNGAPIPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45568" PGL_stop="46454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45568" e_stop="46454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="45568" e_stop="46454" e_length="887"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45568" stop="46218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45579" stop="46143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45580" stop="46397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45585" stop="46143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45589" stop="46213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45594" stop="46454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45595" stop="45852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45599" stop="46212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45616" stop="46165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45629" stop="46435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45981" stop="46442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201367" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTGAACAGAAGAATTGAATAGACATAAGCACACTGTCACTTTTCATTTAAGTTTTTTACTGAAAAGAGACATATTCATATTTAAGAGAGTTTAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAAGCAAAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTCACAACTGGTCTTTTTTTCTGGCAAGCATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCGATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTTAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCCTCAGCGGTTTTC</gDNA_template>
            <first_frame> L  I  E  Q  K  N  *  I  D  I  S  T  L  S  L  F  I  *  V  F  Y  *  K  E  T  Y  S  Y  L  R  E  F  N  T  L  S  S  *  P  K  K  M  *  V  H  N  I  L  *  *  *  F  T  I  K  Q  K  K  N  L  K  N  S  T  R  Q  A  F  T  T  G  L  F  F  W  Q  A  S  S  R  L  E  E  E  H  H  S  S  S  *  D  T  P  T  M  D  Q  *  S  V  H  C  T  L  L  *  T  P  C  R  S  P  H  R  V  I  E  L  F  H  L  S  K  V  L  I  Q  V  L  V  S  P  T  C  T  M  D  M  I  C  I  L  *  S  C  *  E  L  Q  G  C  H  F  Q  Q  Q  L  L  H  S  Q  L  L  *  A  T  R  P  L  I  R  P  R  K  L  Q  S  F  G  R  L  S  C  S  H  S  S  H  F  H  H  S  S  L  H  D  Q  Q  G  L  V  S  A  S  A  S  K  G  R  W  S  C  R  D  H  Q  H  R  Q  T  R  I  P  C  P  Q  L  E  A  I  P  S  R  R  I  L  Q  D  E  V  H  H  *  H  P  L  S  K  F  S  *  L  L  G  S  L  C  S  *  Q  H  S  S  S  F  P  P  N  A  L  S  R  *  L  G  K  A  P  R  D  R  L  M  T  L  A  S  R  C  L  Q  P  Q  R  F   </first_frame>
            <second_frame>  *  L  N  R  R  I  E  *  T  *  A  H  C  H  F  S  F  K  F  F  T  E  K  R  H  I  H  I  *  E  S  L  T  L  S  Q  V  N  Q  K  R  C  K  F  T  T  Y  Y  D  S  N  S  P  *  S  K  K  R  I  *  K  I  A  L  D  K  H  S  Q  L  V  F  F  S  G  K  H  L  A  D  W  K  R  S  T  I  P  A  L  E  T  L  Q  Q  W  I  N  D  L  S  I  A  H  C  C  E  H  L  V  D  L  L  T  G  *  S  N  F  F  T  C  Q  K  F  *  S  K  F  L  S  H  Q  P  V  Q  W  I  *  S  A  F  C  D  P  V  R  N  C  R  V  A  T  F  N  N  S  S  C  T  L  N  F  F  R  Q  H  G  L  *  F  V  L  E  S  Y  N  L  L  E  D  *  A  V  H  I  L  L  T  F  T  I  L  H  C  M  I  N  K  D  L  S  Q  L  L  H  Q  R  V  G  G  A  A  G  I  I  S  I  G  K  H  V  F  P  V  H  N  S  K  Q  F  L  L  A  E  S  C  R  M  K  F  T  I  S  T  H  C  Q  S  S  L  S  Y  L  A  H  C  V  L  D  S  T  P  Q  V  F  L  Q  M  P  *  V  D  S  L  A  K  R  H  E  I  G  *  *  H  *  L  Q  D  V  Y  S  L  S  G  F  </second_frame>
            <third_frame>   D  *  T  E  E  L  N  R  H  K  H  T  V  T  F  H  L  S  F  L  L  K  R  D  I  F  I  F  K  R  V  *  H  S  L  K  L  T  K  K  D  V  S  S  Q  H  I  M  I  V  I  H  H  K  A  K  K  E  S  E  K  *  H  *  T  S  I  H  N  W  S  F  F  L  A  S  I  *  Q  I  G  R  G  A  P  F  Q  L  L  R  H  S  N  N  G  S  M  I  C  P  L  H  I  A  V  N  T  L  S  I  S  S  P  G  D  R  T  F  S  P  V  K  S  S  D  P  S  S  C  L  T  N  L  Y  N  G  Y  D  L  H  S  V  I  L  L  G  I  A  G  L  P  L  S  T  T  A  L  A  L  S  T  S  L  G  N  T  A  F  N  S  S  S  K  A  T  I  F  W  K  I  E  L  F  T  F  F  S  L  S  P  F  F  I  A  *  S  T  R  T  C  L  S  F  C  I  K  G  *  V  E  L  Q  G  S  S  A  *  A  N  T  Y  S  L  S  T  T  R  S  N  S  F  S  Q  N  L  A  G  *  S  S  P  L  A  P  I  V  K  V  L  L  A  T  W  L  T  V  F  L  T  A  L  L  K  F  S  S  K  C  L  K  S  I  A  W  Q  S  A  T  R  *  V  D  D  I  S  F  K  M  S  T  A  S  A  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45804" stop="46154"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGRGAPFQLLRHSNNGSMICPLHIAVNTLSISSPGDRTFSPVKSSDPSSCLTNLYNGYDLHSVILLGIAGLPLSTTALALSTSLGNTAFNSSSKATIFWKIELFTFFSLSPFFIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46112" stop="46378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVHILLTFTILHCMINKDLSQLLHQRVGGAAGIISIGKHVFPVHNSKQFLLAESCRMKFTISTHCQSSLSYLAHCVLDSTPQVFLQMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="46732" PGL_stop="47088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46732" e_stop="47088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="46732" e_stop="47088" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46732" stop="47088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTTCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAAATCG</gDNA_template>
            <first_frame> H  Q  *  G  Y  L  G  S  F  H  R  V  R  P  C  F  L  K  H  R  S  M  G  C  R  S  L  S  *  S  L  S  Q  S  S  *  L  L  H  G  *  L  Q  F  E  V  Q  A  T  V  E  M  F  E  E  H  N  D  L  A  L  V  F  E  E  D  P  F  H  G  A  S  E  L  P  *  H  K  S  F  H  P  K  C  V  P  *  *  Q  Q  P  Q  S  G  Q  G  D  A  S  T  C  V  S  N  S  Q  *  I  Q  A  F  R  S  S  L  Q  R  K  S </first_frame>
            <second_frame>  T  N  R  G  T  L  E  V  S  T  V  *  G  L  V  S  *  N  I  D  Q  W  V  V  V  H  *  V  N  L  S  L  N  H  L  S  C  C  T  D  D  F  N  L  R  S  K  P  L  W  R  C  S  K  S  I  T  I  L  L  W  F  L  K  R  I  H  F  M  E  L  L  S  C  L  D  I  R  A  S  I  Q  N  V  F  H  N  S  S  S  L  N  L  A  R  V  M  L  Q  L  V  C  Q  I  V  S  E  F  R  L  S  V  H  H  F  S  E  N   </second_frame>
            <third_frame>   P  I  G  V  P  W  K  F  P  P  C  K  A  L  F  L  E  T  S  I  N  G  L  S  F  T  E  L  I  S  L  S  I  I  L  V  A  A  R  M  T  S  I  *  G  P  S  H  C  G  D  V  R  R  A  *  R  S  C  F  G  F  *  R  G  S  I  S  W  S  F  *  A  A  L  T  *  E  L  P  S  K  M  C  S  I  I  A  A  A  S  I  W  P  G  *  C  F  N  L  C  V  K  *  S  V  N  S  G  F  P  F  I  T  S  A  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46814" stop="47086"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLSLNHLSCCTDDFNLRSKPLWRCSKSITILLWFLKRIHFMELLSCLDIRASIQNVFHNSSSLNLARVMLQLVCQIVSEFRLSVHHFSEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="48357" PGL_stop="55065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48357" e_stop="48627"/>
            <exon e_start="54976" e_stop="55065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.295" e_score="0.963"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="48357" e_stop="48627" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.295">
            <gDNA_intron_boundary i_start="48628" i_stop="54975" i_length="6348"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="54976" e_stop="55065" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48357" stop="48627"/>
              <exon start="54976" stop="55065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358541" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCAATCACTACTAGCTTTCACACCAGCCCTTGCACTTTCAGAAAGTTCCACTTTGACCCCATTACTTTTGTTATCAACATTTGCAATGGATGCAACTTGTGCAACTGTTAAAGTTTCACCCCCAAGTTTCACAATTGGCTTTCTAAATTCATCCACCATCTTTTTCACTTCATCCAAATGACTCCCTCTTAATGATTCAGCAGCCATTTCCCAATTCAATGGATCATTAACATTAATTGATTTCTTACATAAATCCATAGCTTCTCCAT : CTTCTCCATTAACATGTCCATTTTGTACAATTGATGATGCCATTGGACCAACAAAAAATGGTTTGATTTGTAATGGAGAAATTTTACTGA</gDNA_template>
            <first_frame> T  Q  S  L  L  A  F  T  P  A  L  A  L  S  E  S  S  T  L  T  P  L  L  L  L  S  T  F  A  M  D  A  T  C  A  T  V  K  V  S  P  P  S  F  T  I  G  F  L  N  S  S  T  I  F  F  T  S  S  K  *  L  P  L  N  D  S  A  A  I  S  Q  F  N  G  S  L  T  L  I  D  F  L  H  K  S  I  A  S  P   : S  S  P  L  T  C  P  F  C  T  I  D  D  A  I  G  P  T  K  N  G  L  I  C  N  G  E  I  L  L  </first_frame>
            <second_frame>  P  N  H  Y  *  L  S  H  Q  P  L  H  F  Q  K  V  P  L  *  P  H  Y  F  C  Y  Q  H  L  Q  W  M  Q  L  V  Q  L  L  K  F  H  P  Q  V  S  Q  L  A  F  *  I  H  P  P  S  F  S  L  H  P  N  D  S  L  L  M  I  Q  Q  P  F  P  N  S  M  D  H  *  H  *  L  I  S  Y  I  N  P  *  L  L  H  :  L  L  H  *  H  V  H  F  V  Q  L  M  M  P  L  D  Q  Q  K  M  V  *  F  V  M  E  K  F  Y  * </second_frame>
            <third_frame>   P  I  T  T  S  F  H  T  S  P  C  T  F  R  K  F  H  F  D  P  I  T  F  V  I  N  I  C  N  G  C  N  L  C  N  C  *  S  F  T  P  K  F  H  N  W  L  S  K  F  I  H  H  L  F  H  F  I  Q  M  T  P  S  *  *  F  S  S  H  F  P  I  Q  W  I  I  N  I  N  *  F  L  T  *  I  H  S  F  S  I :   F  S  I  N  M  S  I  L  Y  N  *  *  C  H  W  T  N  K  K  W  F  D  L  *  W  R  N  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0130H12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49929" e_stop="49952"/>
            <exon e_start="52672" e_stop="53305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="49929" e_stop="49952" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49953" i_stop="52671" i_length="2719"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="52672" e_stop="53305" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49929" stop="49952"/>
              <exon start="52672" stop="53305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377863" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTTTTTTTTTTTTTTTGTTT : TACAATAAAATGATATTATGATTATAGTAAATTACTGTAAGGTAAAAAAAAGAATTTGAAAGTAACAGTTGACAAACATTTAGCAGATTGGAATAGGAGCACCATTCCAGCTTTTGAGACACTCCAACAATGGATCAATGATTTGTCCATTGCAAAATGCTGTGAATACCTTATCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAATAGTTCTGTTCCAACTTCTTGTCTAACCAACCTGTACAATGGATATGATCTACATTCTGTGATCCTGTTAGGAATTGCAGGGTTTCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACACGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGGTCATCAGCATAGGTAAACAAATATTCCCTTTCCACCACTTGTAGCAATTCCTTTTCGCAGAATCTTGCTGGATGAAGTTCGCCATTAGCACCCATTGCCAGAGTCTTTTTGGCTACTTGGCTTACAGTGTTTTTCACAGCATTCTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  L  F  :  Y  N  K  M  I  L  *  L  *  *  I  T  V  R  *  K  K  E  F  E  S  N  S  *  Q  T  F  S  R  L  E  *  E  H  H  S  S  F  *  D  T  P  T  M  D  Q  *  F  V  H  C  K  M  L  *  I  P  Y  Q  S  P  H  R  A  I  E  L  F  H  L  S  I  V  L  F  Q  L  L  V  *  P  T  C  T  M  D  M  I  Y  I  L  *  S  C  *  E  L  Q  G  F  H  F  Q  Q  Q  L  L  H  S  Q  L  L  *  A  T  R  P  S  I  R  P  R  K  L  Q  S  F  G  R  L  S  C  S  H  S  S  H  F  H  H  S  S  L  H  D  Q  Q  G  L  V  S  A  S  A  S  K  G  R  W  S  C  R  G  H  Q  H  R  *  T  N  I  P  F  P  P  L  V  A  I  P  F  R  R  I  L  L  D  E  V  R  H  *  H  P  L  P  E  S  F  W  L  L  G  L  Q  C  F  S  Q  H  S  </first_frame>
            <second_frame>  S  F  F  F  F  F  C  F :   T  I  K  *  Y  Y  D  Y  S  K  L  L  *  G  K  K  K  N  L  K  V  T  V  D  K  H  L  A  D  W  N  R  S  T  I  P  A  F  E  T  L  Q  Q  W  I  N  D  L  S  I  A  K  C  C  E  Y  L  I  N  L  L  T  G  R  S  N  F  F  T  C  Q  *  F  C  S  N  F  L  S  N  Q  P  V  Q  W  I  *  S  T  F  C  D  P  V  R  N  C  R  V  S  T  F  N  N  S  S  C  T  L  N  F  F  R  Q  H  G  L  Q  F  V  L  E  S  Y  N  L  L  E  D  *  A  V  H  I  L  L  T  F  T  I  L  H  C  M  I  N  K  D  L  S  Q  L  L  H  Q  R  V  G  G  A  A  G  V  I  S  I  G  K  Q  I  F  P  F  H  H  L  *  Q  F  L  F  A  E  S  C  W  M  K  F  A  I  S  T  H  C  Q  S  L  F  G  Y  L  A  Y  S  V  F  H  S  I  L </second_frame>
            <third_frame>   L  F  F  F  F  F  V   : L  Q  *  N  D  I  M  I  I  V  N  Y  C  K  V  K  K  R  I  *  K  *  Q  L  T  N  I  *  Q  I  G  I  G  A  P  F  Q  L  L  R  H  S  N  N  G  S  M  I  C  P  L  Q  N  A  V  N  T  L  S  I  S  S  P  G  D  R  T  F  S  P  V  N  S  S  V  P  T  S  C  L  T  N  L  Y  N  G  Y  D  L  H  S  V  I  L  L  G  I  A  G  F  P  L  S  T  T  A  L  A  L  S  T  S  L  G  N  T  A  F  N  S  S  S  K  A  T  I  F  W  K  I  E  L  F  T  F  F  S  L  S  P  F  F  I  A  *  S  T  R  T  C  L  S  F  C  I  K  G  *  V  E  L  Q  G  S  S  A  *  V  N  K  Y  S  L  S  T  T  C  S  N  S  F  S  Q  N  L  A  G  *  S  S  P  L  A  P  I  A  R  V  F  L  A  T  W  L  T  V  F  F  T  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52755" stop="53105"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGIGAPFQLLRHSNNGSMICPLQNAVNTLSISSPGDRTFSPVNSSVPTSCLTNLYNGYDLHSVILLGIAGFPLSTTALALSTSLGNTAFNSSSKATIFWKIELFTFFSLSPFFIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="70909" PGL_stop="58368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68194" e_stop="67937"/>
            <exon e_start="67675" e_stop="67474"/>
            <exon e_start="62176" e_stop="62057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.930"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="68194" e_stop="67937" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67936" i_stop="67676" i_length="261"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="67675" e_stop="67474" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67473" i_stop="62177" i_length="5297"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="62176" e_stop="62057" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68194" stop="67937"/>
              <exon start="67675" stop="67474"/>
              <exon start="62176" stop="62057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454129" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68052" stop="67937"/>
              <exon start="67675" stop="67474"/>
              <exon start="62176" stop="62057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425202" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCGAGCAGTAAGAAGCCATCGCGATTTCAGCTCCCTTGAAACCATAATCCAAGCTTGGATTCCTTCCTGCTGAGAGATTAGATGGCAATCCATTGTTGTAATAGTCGTTGACAAGCTCCGATAATTGGGCAAACATCAATTTCCCTATTGATGCAAGGGCTAATCTTGTATTATCCATGGAGACACCAATAGGGGTTCCTTGGAAGTTTCCACCATGCAACGCCTTGTTTCTTGAAACATCGATCAATGGATTGTC : ATTCATCACTTCAGCGAAAATCGCTGATAAAACTTCAGACATGACAACAAGAATGTTGGACTCAAACAGTACCATTGATGCCATACCAGAACCAACTGCAGTACCATTCACAAGTGCAAGTCCTTCCTTAGGCTGCAACTCGAAAAATCCACTAGTAACACCAGCCACGCGGAACGCTTCCTCAGCATTAAGTTTCTCACCA : TTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAAC</gDNA_template>
            <first_frame> F  R  A  V  R  S  H  R  D  F  S  S  L  E  T  I  I  Q  A  W  I  P  S  C  *  E  I  R  W  Q  S  I  V  V  I  V  V  D  K  L  R  *  L  G  K  H  Q  F  P  Y  *  C  K  G  *  S  C  I  I  H  G  D  T  N  R  G  S  L  E  V  S  T  M  Q  R  L  V  S  *  N  I  D  Q  W  I  V  :  I  H  H  F  S  E  N  R  *  *  N  F  R  H  D  N  K  N  V  G  L  K  Q  Y  H  *  C  H  T  R  T  N  C  S  T  I  H  K  C  K  S  F  L  R  L  Q  L  E  K  S  T  S  N  T  S  H  A  E  R  F  L  S  I  K  F  L  T   : I  W  F  L  K  R  I  H  F  M  E  L  L  S  C  L  D  I  R  A  A  I  Q  N  V  F  H  N  S  S  S  L  N  L  A  R  V  M  L  Q  </first_frame>
            <second_frame>  S  E  Q  *  E  A  I  A  I  S  A  P  L  K  P  *  S  K  L  G  F  L  P  A  E  R  L  D  G  N  P  L  L  *  *  S  L  T  S  S  D  N  W  A  N  I  N  F  P  I  D  A  R  A  N  L  V  L  S  M  E  T  P  I  G  V  P  W  K  F  P  P  C  N  A  L  F  L  E  T  S  I  N  G  L  S :   F  I  T  S  A  K  I  A  D  K  T  S  D  M  T  T  R  M  L  D  S  N  S  T  I  D  A  I  P  E  P  T  A  V  P  F  T  S  A  S  P  S  L  G  C  N  S  K  N  P  L  V  T  P  A  T  R  N  A  S  S  A  L  S  F  S  P  :  F  G  F  *  R  G  S  I  S  W  S  F  *  A  A  L  T  *  E  L  P  S  K  M  C  S  I  I  A  A  A  S  I  W  P  G  *  C  F  N </second_frame>
            <third_frame>   P  S  S  K  K  P  S  R  F  Q  L  P  *  N  H  N  P  S  L  D  S  F  L  L  R  D  *  M  A  I  H  C  C  N  S  R  *  Q  A  P  I  I  G  Q  T  S  I  S  L  L  M  Q  G  L  I  L  Y  Y  P  W  R  H  Q  *  G  F  L  G  S  F  H  H  A  T  P  C  F  L  K  H  R  S  M  D  C   : H  S  S  L  Q  R  K  S  L  I  K  L  Q  T  *  Q  Q  E  C  W  T  Q  T  V  P  L  M  P  Y  Q  N  Q  L  Q  Y  H  S  Q  V  Q  V  L  P  *  A  A  T  R  K  I  H  *  *  H  Q  P  R  G  T  L  P  Q  H  *  V  S  H  H :   L  V  F  E  E  D  P  F  H  G  A  S  E  L  P  *  H  K  S  C  H  P  K  C  V  P  *  *  Q  Q  P  Q  S  G  Q  G  D  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68088" stop="67937"/>
                    <exon start="67675" stop="67474"/>
                    <exon start="62176" stop="62165"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTSSDNWANINFPIDARANLVLSMETPIGVPWKFPPCNALFLETSINGLSFITSAKIADKTSDMTTRMLDSNSTIDAIPEPTAVPFTSASPSLGCNSKNPLVTPATRNASSALSFSPFGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63400" e_stop="62645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="63400" e_stop="62645" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63400" stop="62688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63106" stop="62645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201367" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACAAAGATATGTATTATAACCTGTAAAGTTGTAGAAATTGAATGAACATACAATTTAGAGATTATTATAATTGTAGTAATTCACTGAAAAAATAAGACTTGACAAACATCTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGAGACACTCCAACAATGGATCAATGATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGTGATCGAACTTTTTCACCTGTCAAAAGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTGATCCTGTTAGGAATTGCAGGGTTGCCACTTTCAACAACAGCTCTTGCACTCTCAACTTCTTTAGGCAACGCGGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCTTCTCACTTTCACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGGAGCTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACAACTCGAAGCAATTCCTTCTCGCAGAATCTTGCAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCACTCCTCAAGTTTTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCTACAGCC</gDNA_template>
            <first_frame> R  H  K  D  M  Y  Y  N  L  *  S  C  R  N  *  M  N  I  Q  F  R  D  Y  Y  N  C  S  N  S  L  K  K  *  D  L  T  N  I  *  Q  I  G  R  G  A  P  F  Q  L  L  R  H  S  N  N  G  S  M  I  C  P  L  H  I  A  V  N  T  L  S  I  S  S  P  G  D  R  T  F  S  P  V  K  S  S  D  P  S  S  C  L  T  N  L  Y  N  G  Y  D  L  H  S  V  I  L  L  G  I  A  G  L  P  L  S  T  T  A  L  A  L  S  T  S  L  G  N  A  A  F  N  S  S  S  K  A  T  I  F  W  K  I  E  L  F  T  F  F  S  L  S  P  F  F  I  A  *  S  T  R  T  C  L  S  F  C  I  K  G  *  V  E  L  Q  G  S  S  A  *  A  N  T  Y  S  L  S  T  T  R  S  N  S  F  S  Q  N  L  A  G  *  S  S  P  L  A  P  I  V  K  V  L  L  A  T  W  L  T  V  F  L  T  A  L  L  K  F  S  S  K  C  L  K  S  I  A  W  Q  S  A  T  R  *  V  D  D  I  S  F  K  M  S  T  A </first_frame>
            <second_frame>  D  T  K  I  C  I  I  T  C  K  V  V  E  I  E  *  T  Y  N  L  E  I  I  I  I  V  V  I  H  *  K  N  K  T  *  Q  T  S  S  R  L  E  E  E  H  H  S  S  S  *  D  T  P  T  M  D  Q  *  S  V  H  C  T  L  L  *  T  P  C  Q  S  P  H  R  V  I  E  L  F  H  L  S  K  V  L  I  Q  V  L  V  S  P  T  C  T  M  D  M  I  C  I  L  *  S  C  *  E  L  Q  G  C  H  F  Q  Q  Q  L  L  H  S  Q  L  L  *  A  T  R  P  S  I  R  P  R  K  L  Q  S  F  G  R  L  S  C  S  H  S  S  H  F  H  H  S  S  L  H  D  Q  Q  G  L  V  S  A  S  A  S  K  G  R  W  S  C  R  D  H  Q  H  R  Q  T  R  I  P  C  P  Q  L  E  A  I  P  S  R  R  I  L  Q  D  E  V  H  H  *  H  P  L  S  K  F  S  *  L  L  G  S  L  C  S  *  Q  H  S  S  S  F  P  P  N  A  L  S  R  *  L  G  K  A  P  R  D  R  L  M  T  L  A  S  R  C  L  Q   </second_frame>
            <third_frame>   T  Q  R  Y  V  L  *  P  V  K  L  *  K  L  N  E  H  T  I  *  R  L  L  *  L  *  *  F  T  E  K  I  R  L  D  K  H  L  A  D  W  K  R  S  T  I  P  A  L  E  T  L  Q  Q  W  I  N  D  L  S  I  A  H  C  C  E  H  L  V  N  L  L  T  G  *  S  N  F  F  T  C  Q  K  F  *  S  K  F  L  S  H  Q  P  V  Q  W  I  *  S  A  F  C  D  P  V  R  N  C  R  V  A  T  F  N  N  S  S  C  T  L  N  F  F  R  Q  R  G  L  Q  F  V  L  E  S  Y  N  L  L  E  D  *  A  V  H  I  L  L  T  F  T  I  L  H  C  M  I  N  K  D  L  S  Q  L  L  H  Q  R  V  G  G  A  A  G  I  I  S  I  G  K  H  V  F  P  V  H  N  S  K  Q  F  L  L  A  E  S  C  R  M  K  F  T  I  S  T  H  C  Q  S  S  L  S  Y  L  A  H  C  V  L  D  S  T  P  Q  V  F  L  Q  M  P  *  V  D  S  L  A  K  R  H  E  I  G  *  *  H  *  L  Q  D  V  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63283" stop="62933"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIGRGAPFQLLRHSNNGSMICPLHIAVNTLSISSPGDRTFSPVKSSDPSSCLTNLYNGYDLHSVILLGIAGLPLSTTALALSTSLGNAAFNSSSKATIFWKIELFTFFSLSPFFIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62975" stop="62709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVHILLTFTILHCMINKDLSQLLHQRVGGAAGIISIGKHVFPVHNSKQFLLAESCRMKFTISTHCQSSLSYLAHCVLDSTPQVFLQMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62355" e_stop="61999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="62355" e_stop="61999" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62355" stop="61999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAATAGGGGTACCTTGGAAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGGCCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTTCCGTTCATCACTTCAGCGAAAATCG</gDNA_template>
            <first_frame> H  Q  *  G  Y  L  G  S  F  H  R  V  R  P  C  F  L  K  H  R  S  M  G  C  R  S  L  S  *  S  L  S  Q  S  S  *  L  L  H  G  *  L  Q  F  E  V  Q  A  T  V  E  M  F  E  E  H  N  D  L  A  L  V  F  E  E  D  P  F  H  G  A  S  E  L  P  *  H  K  S  C  H  P  K  C  V  P  *  *  Q  Q  P  Q  S  G  Q  G  D  A  S  T  C  V  S  N  S  Q  *  I  Q  A  F  R  S  S  L  Q  R  K  S </first_frame>
            <second_frame>  T  N  R  G  T  L  E  V  S  T  V  *  G  L  V  S  *  N  I  D  Q  W  V  V  V  H  *  V  N  L  S  L  N  H  L  S  C  C  T  D  D  F  N  L  R  S  K  P  L  W  R  C  S  K  S  I  T  I  L  L  W  F  L  K  R  I  H  F  M  E  L  L  S  C  L  D  I  R  A  A  I  Q  N  V  F  H  N  S  S  S  L  N  L  A  R  V  M  L  Q  L  V  C  Q  I  V  S  E  F  R  L  S  V  H  H  F  S  E  N   </second_frame>
            <third_frame>   P  I  G  V  P  W  K  F  P  P  C  K  A  L  F  L  E  T  S  I  N  G  L  S  F  T  E  L  I  S  L  S  I  I  L  V  A  A  R  M  T  S  I  *  G  P  S  H  C  G  D  V  R  R  A  *  R  S  C  F  G  F  *  R  G  S  I  S  W  S  F  *  A  A  L  T  *  E  L  P  S  K  M  C  S  I  I  A  A  A  S  I  W  P  G  *  C  F  N  L  C  V  K  *  S  V  N  S  G  F  P  F  I  T  S  A  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62273" stop="62001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLSLNHLSCCTDDFNLRSKPLWRCSKSITILLWFLKRIHFMELLSCLDIRAAIQNVFHNSSSLNLARVMLQLVCQIVSEFRLSVHHFSEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="70909" e_stop="70724"/>
            <exon e_start="69396" e_stop="69047"/>
            <exon e_start="60084" e_stop="60069"/>
            <exon e_start="58439" e_stop="58368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.493" e_score="0.991"/>
          <exon-intron don_prob="0.845" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="70909" e_stop="70724" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="70723" i_stop="69397" i_length="1327"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="69396" e_stop="69047" e_length="350"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.493">
            <gDNA_intron_boundary i_start="69046" i_stop="60085" i_length="8962"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="60084" e_stop="60069" e_length="16"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60068" i_stop="58440" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58439" e_stop="58368" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70909" stop="70724"/>
              <exon start="69396" stop="69047"/>
              <exon start="60084" stop="60069"/>
              <exon start="58439" stop="58368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTAAAAAAACAACCTGGGCACTGCAAAACACCTAAAAAGTAAAAAAAAAGCACCAAAATCCTAAATCCAATGTTCTTTTTCAGAGTTTAAAGAGTGAAGAAATTAAAGTTCTGTTTTAGTTTCAGTTTCAGTACGAGGTGATCATCCATCAGTTTATGAATTTTTTGGTGTTGTCAGAACAAG : GAAGTTAATTTAAAGCCTTTAGGGTTGAAGAAAAACTTGAATCAATGGGTTTTGTGATTGTAATATCACTACCATTGATTCTCTTCATCCTCATTGCAGCCCTTGCTTGTTACCTCTTTGGTAAGTCTCGAGGCCGTCGAGAAGCCGCCATGGTTCCACCATATTATGGACCACCACCACCAGCACCTCCTCCCGGAGTCCTTTCTCCGCCACCCCAAAAATAACATTTGTAAATGTCATGTAGTTAAAATTTGAGCAATACCTTTGTTTGTTTATTTGGGCAAAATGATTGTTATAAAGGCCAAAAGTGAATATTAATGCTTCTTTTTATGTCATACAAAGAAATAAAA : AAAGAAGAAAACAAAG : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG</gDNA_template>
            <first_frame> F  L  K  K  Q  P  G  H  C  K  T  P  K  K  *  K  K  S  T  K  I  L  N  P  M  F  F  F  R  V  *  R  V  K  K  L  K  F  C  F  S  F  S  F  S  T  R  *  S  S  I  S  L  *  I  F  W  C  C  Q  N  K  :  E  V  N  L  K  P  L  G  L  K  K  N  L  N  Q  W  V  L  *  L  *  Y  H  Y  H  *  F  S  S  S  S  L  Q  P  L  L  V  T  S  L  V  S  L  E  A  V  E  K  P  P  W  F  H  H  I  M  D  H  H  H  Q  H  L  L  P  E  S  F  L  R  H  P  K  N  N  I  C  K  C  H  V  V  K  I  *  A  I  P  L  F  V  Y  L  G  K  M  I  V  I  K  A  K  S  E  Y  *  C  F  F  L  C  H  T  K  K  *  K :   K  K  K  T  K  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W </first_frame>
            <second_frame>  F  *  K  N  N  L  G  T  A  K  H  L  K  S  K  K  K  A  P  K  S  *  I  Q  C  S  F  S  E  F  K  E  *  R  N  *  S  S  V  L  V  S  V  S  V  R  G  D  H  P  S  V  Y  E  F  F  G  V  V  R  T  R :   K  L  I  *  S  L  *  G  *  R  K  T  *  I  N  G  F  C  D  C  N  I  T  T  I  D  S  L  H  P  H  C  S  P  C  L  L  P  L  W  *  V  S  R  P  S  R  S  R  H  G  S  T  I  L  W  T  T  T  T  S  T  S  S  R  S  P  F  S  A  T  P  K  I  T  F  V  N  V  M  *  L  K  F  E  Q  Y  L  C  L  F  I  W  A  K  *  L  L  *  R  P  K  V  N  I  N  A  S  F  Y  V  I  Q  R  N  K   : K  R  R  K  Q  S :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   F  K  K  T  T  W  A  L  Q  N  T  *  K  V  K  K  K  H  Q  N  P  K  S  N  V  L  F  Q  S  L  K  S  E  E  I  K  V  L  F  *  F  Q  F  Q  Y  E  V  I  I  H  Q  F  M  N  F  L  V  L  S  E  Q   : G  S  *  F  K  A  F  R  V  E  E  K  L  E  S  M  G  F  V  I  V  I  S  L  P  L  I  L  F  I  L  I  A  A  L  A  C  Y  L  F  G  K  S  R  G  R  R  E  A  A  M  V  P  P  Y  Y  G  P  P  P  P  A  P  P  P  G  V  L  S  P  P  P  Q  K  *  H  L  *  M  S  C  S  *  N  L  S  N  T  F  V  C  L  F  G  Q  N  D  C  Y  K  G  Q  K  *  I  L  M  L  L  F  M  S  Y  K  E  I  K  :  K  E  E  N  K   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69388" stop="69173"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKAFRVEEKLESMGFVIVISLPLILFILIAALACYLFGKSRGRREAAMVPPYYGPPPPAPPPGVLSPPPQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="60254" PGL_stop="68539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60264" e_stop="60773"/>
            <exon e_start="61538" e_stop="63402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60264" e_stop="60773" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="61538" e_stop="63402" e_length="1865"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60264" stop="60766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60265" stop="60773"/>
              <exon start="61538" stop="61570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60269" stop="60773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60274" stop="60618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60280" stop="60773"/>
              <exon start="61538" stop="61721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60280" stop="60773"/>
              <exon start="61538" stop="61586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60287" stop="60773"/>
              <exon start="61538" stop="61722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60300" stop="60773"/>
              <exon start="61538" stop="61570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60304" stop="60773"/>
              <exon start="61538" stop="61710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60311" stop="60662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60315" stop="60773"/>
              <exon start="61538" stop="61837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60315" stop="60773"/>
              <exon start="61538" stop="61820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60315" stop="60773"/>
              <exon start="61538" stop="61817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60315" stop="60773"/>
              <exon start="61538" stop="61816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60315" stop="60773"/>
              <exon start="61538" stop="61790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60315" stop="60773"/>
              <exon start="61538" stop="61722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60367" stop="60773"/>
              <exon start="61538" stop="61839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60434" stop="60773"/>
              <exon start="61538" stop="61721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60468" stop="60773"/>
              <exon start="61538" stop="61985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60473" stop="60773"/>
              <exon start="61538" stop="61954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60479" stop="60773"/>
              <exon start="61538" stop="61695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60492" stop="60773"/>
              <exon start="61538" stop="61664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60493" stop="60773"/>
              <exon start="61538" stop="61913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60502" stop="60773"/>
              <exon start="61538" stop="61985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60502" stop="60773"/>
              <exon start="61538" stop="61879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60527" stop="60773"/>
              <exon start="61538" stop="61879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60577" stop="60773"/>
              <exon start="61538" stop="61985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60640" stop="60773"/>
              <exon start="61538" stop="62155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60641" stop="60773"/>
              <exon start="61538" stop="62139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60644" stop="60773"/>
              <exon start="61538" stop="61987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60667" stop="60773"/>
              <exon start="61538" stop="61801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60709" stop="60773"/>
              <exon start="61538" stop="62022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60720" stop="60773"/>
              <exon start="61538" stop="62053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60735" stop="60773"/>
              <exon start="61538" stop="61881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62500" stop="62982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62501" stop="62982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62505" stop="62752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62522" stop="63117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62525" stop="62981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62535" stop="62981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62537" stop="62888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62546" stop="62884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62553" stop="63109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62572" stop="63289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62574" stop="63011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62575" stop="63145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62575" stop="63109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62600" stop="62983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62609" stop="63157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62609" stop="62919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62619" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62619" stop="63109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62627" stop="63234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62629" stop="63180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62645" stop="63138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62658" stop="63263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62663" stop="63312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62685" stop="63289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62687" stop="63249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62687" stop="63124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62687" stop="63118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62692" stop="63141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62703" stop="63004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62733" stop="63298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62737" stop="63263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62777" stop="63234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="63233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62826" stop="63260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62832" stop="63179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62870" stop="63402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAACATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG : GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTATGTTCATTCAATTTCTACAACTTTACAGGTTATAATACATATCTTTGTGTCTTC</gDNA_template>
            <first_frame> H  N  I  F  L  L  Y  K  N  N  L  *  P  F  F  F  H  *  N  F  S  I  T  N  Q  T  I  F  C  *  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  H  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  N  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  C  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  Q  :  V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  Q  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  L  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  E  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  *  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  V  C  Q  V  L  F  F  Q  *  I  T  T  I  I  I  I  S  K  L  Y  V  H  S  I  S  T  T  L  Q  V  I  I  H  I  F  V  S   </first_frame>
            <second_frame>  T  T  F  F  C  Y  I  K  I  I  S  S  H  F  F  F  T  K  I  S  P  L  Q  I  K  P  F  F  V  N  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  A  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  F  V  K  S  Y  F  F  S  E  L  L  Q  L  *  *  S  L  N  C  M  F  I  Q  F  L  Q  L  Y  R  L  *  Y  I  S  L  C  L  </second_frame>
            <third_frame>   Q  H  F  F  V  I  *  K  *  S  L  A  I  F  F  S  L  K  F  L  H  Y  K  S  N  H  F  L  L  I  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  P  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  K  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  V  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  S   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  A  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  S  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  R  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  L  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  S  S  L  I  F  S  V  N  Y  Y  N  Y  N  N  L  *  I  V  C  S  F  N  F  Y  N  F  T  G  Y  N  T  Y  L  C  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60265" stop="60773"/>
                    <exon start="61538" stop="63287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2256</number_coding_nucleotides>
                  <number_encoded_amino_acids>752</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTFFCYIKIISSHFFFTKISPLQIKPFFVNPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAALPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61536" e_stop="63402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="61536" e_stop="63402" e_length="1867"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61536" stop="61833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="62072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61538" stop="61837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61539" stop="62293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61554" stop="62193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61569" stop="62259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61570" stop="62242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61583" stop="62238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61583" stop="61873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61604" stop="62135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61622" stop="62182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61652" stop="61970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61667" stop="62237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61684" stop="62536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61690" stop="62117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61716" stop="62000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="62499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61731" stop="62201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61739" stop="62171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61740" stop="62229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61749" stop="62556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61751" stop="62221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61752" stop="62310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61756" stop="62313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61757" stop="62285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61773" stop="62303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61783" stop="62536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61794" stop="62433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61799" stop="62426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448947" strand="+"/>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62777" stop="63234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="63233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62826" stop="63260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62832" stop="63179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62870" stop="63402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTATGTTCATTCAATTTCTACAACTTTACAGGTTATAATACATATCTTTGTGTCTTC</gDNA_template>
            <first_frame> R  F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  A  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  F  V  K  S  Y  F  F  S  E  L  L  Q  L  *  *  S  L  N  C  M  F  I  Q  F  L  Q  L  Y  R  L  *  Y  I  S  L  C  L  </first_frame>
            <second_frame>  G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  A  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  S  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  R  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  L  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  S  S  L  I  F  S  V  N  Y  Y  N  Y  N  N  L  *  I  V  C  S  F  N  F  Y  N  F  T  G  Y  N  T  Y  L  C  V  F </second_frame>
            <third_frame>   V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  Q  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  L  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  E  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  *  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  V  C  Q  V  L  F  F  Q  *  I  T  T  I  I  I  I  S  K  L  Y  V  H  S  I  S  T  T  L  Q  V  I  I  H  I  F  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61536" stop="63287"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1749</number_coding_nucleotides>
                  <number_encoded_amino_acids>583</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAALPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60264" e_stop="60773"/>
            <exon e_start="61538" e_stop="61588"/>
            <exon e_start="61718" e_stop="63402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60264" e_stop="60773" e_length="510"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60774" i_stop="61537" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61538" e_stop="61588" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61589" i_stop="61717" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="61718" e_stop="63402" e_length="1685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60264" stop="60766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60265" stop="60773"/>
              <exon start="61538" stop="61570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60269" stop="60773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60274" stop="60618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60280" stop="60773"/>
              <exon start="61538" stop="61586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60300" stop="60773"/>
              <exon start="61538" stop="61570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60311" stop="60662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60592" stop="60773"/>
              <exon start="61538" stop="61588"/>
              <exon start="61718" stop="62065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="62499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61731" stop="62201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61739" stop="62171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61740" stop="62229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61749" stop="62556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61751" stop="62221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61752" stop="62310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61756" stop="62313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61757" stop="62285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61773" stop="62303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61783" stop="62536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61794" stop="62433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61799" stop="62426"/>
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              <exon start="62737" stop="63263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62777" stop="63234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="63233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62826" stop="63260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62832" stop="63179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62870" stop="63402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAACATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAACCATTTTTTGTTAATCCAATGGCATCATCAATTGTACAAAATGGACATGTTAATGGAGAAGCCATGGATTTATGTAAGAAATCAATTAATGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAAATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTAACAGTTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTCAAAGTGGAACTTTCTGAAAGTGCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGGGGAAAGGTACAGATAGTTACGGTGTGACTACTGGATTTGGTGCAACATCTCATAGAAGAACTAAAAATGGTGGTGCACTTCAAAAGGAACTTATCAG : GTTCTTGAATGCTGGAGTTTTTGGAAATGGAACAGAATCATCTCATACTTT : GCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGCTGTCATGTCTGAAGTCTTGTCAGCGATTTTCGCTGAAGTGATGAACGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGCAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAACCCATTGATCGATGTTTCAAGAAACAAGGCCTTACACGGTGGAAACTTCCAAGGTACCCCTATTGGTGTCTCCATGGATAATACAAGATTGGCCCTTGCATCTATTGGGAAATTGATGTTTGCCCAATTTTCGGAACTTGTCAACGACTATTACAACAATGGGTTGCCATCTAATCTCACAGCAGGAAGGAATCCAAGCTTGGATTATGGACTCAAGGGAGCTGAAATTGCAATGGCTTCTTACTGCTCAGAACTTCAATTCCTTGCAAATCCAGTGACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCATTGGGCTTAATCTCAGCAAGGAAAACCGCTGAGGCTGTAGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTAAGGCATTTGGAGGAAAACTTGAGGAGTGCTGTCAAGAACACAGTGAGCCAAGTAGCTAAGAGAACTTTGACAATGGGTGCTAATGGTGAACTTCATCCTGCAAGATTCTGCGAGAAGGAATTGCTTCGAGTTGTGGACAGGGAATACGTGTTTGCCTATGCTGATGATCCCTGCAGCTCCACCTACCCTTTGATGCAGAAGCTGAGACAAGTCCTTGTTGATCATGCAATGAAGAATGGTGAAAGTGAGAAGAATGTGAACAGCTCAATCTTCCAAAAGATTGTAGCTTTCGAGGACGAATTGAAGGCCGCGTTGCCTAAAGAAGTTGAGAGTGCAAGAGCTGTTGTTGAAAGTGGCAACCCTGCAATTCCTAACAGGATCACAGAATGCAGATCATATCCATTGTACAGGTTGGTGAGACAAGAACTTGGATCAGAACTTTTGACAGGTGAAAAAGTTCGATCACCCGGTGAGGAGATTGACAAGGTGTTCACAGCAATGTGCAATGGACAGATCATTGATCCATTGTTGGAGTGTCTCAAGAGCTGGAATGGTGCTCCTCTTCCAATCTGCTAGATGTTTGTCAAGTCTTATTTTTTCAGTGAATTACTACAATTATAATAATCTCTAAATTGTATGTTCATTCAATTTCTACAACTTTACAGGTTATAATACATATCTTTGTGTCTTC</gDNA_template>
            <first_frame> H  N  I  F  L  L  Y  K  N  N  L  *  P  F  F  F  H  *  N  F  S  I  T  N  Q  T  I  F  C  *  S  N  G  I  I  N  C  T  K  W  T  C  *  W  R  S  H  G  F  M  *  E  I  N  *  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  N  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  N  S  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  Q  S  G  T  F  *  K  C  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  G  E  R  Y  R  *  L  R  C  D  Y  W  I  W  C  N  I  S  *  K  N  *  K  W  W  C  T  S  K  G  T  Y  Q  :  V  L  E  C  W  S  F  W  K  W  N  R  I  I  S  Y  F  :  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  L  V  S  D  F  R  *  S  D  E  R  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  Q  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  T  S  N  *  S  H  P  C  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  P  I  D  R  C  F  K  K  Q  G  L  T  R  W  K  L  P  R  Y  P  Y  W  C  L  H  G  *  Y  K  I  G  P  C  I  Y  W  E  I  D  V  C  P  I  F  G  T  C  Q  R  L  L  Q  Q  W  V  A  I  *  S  H  S  R  K  E  S  K  L  G  L  W  T  Q  G  S  *  N  C  N  G  F  L  L  L  R  T  S  I  P  C  K  S  S  D  *  P  C  P  K  C  *  A  T  Q  P  R  C  E  F  I  G  L  N  L  S  K  E  N  R  *  G  C  R  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  K  A  F  G  G  K  L  E  E  C  C  Q  E  H  S  E  P  S  S  *  E  N  F  D  N  G  C  *  W  *  T  S  S  C  K  I  L  R  E  G  I  A  S  S  C  G  Q  G  I  R  V  C  L  C  *  *  S  L  Q  L  H  L  P  F  D  A  E  A  E  T  S  P  C  *  S  C  N  E  E  W  *  K  *  E  E  C  E  Q  L  N  L  P  K  D  C  S  F  R  G  R  I  E  G  R  V  A  *  R  S  *  E  C  K  S  C  C  *  K  W  Q  P  C  N  S  *  Q  D  H  R  M  Q  I  I  S  I  V  Q  V  G  E  T  R  T  W  I  R  T  F  D  R  *  K  S  S  I  T  R  *  G  D  *  Q  G  V  H  S  N  V  Q  W  T  D  H  *  S  I  V  G  V  S  Q  E  L  E  W  C  S  S  S  N  L  L  D  V  C  Q  V  L  F  F  Q  *  I  T  T  I  I  I  I  S  K  L  Y  V  H  S  I  S  T  T  L  Q  V  I  I  H  I  F  V  S   </first_frame>
            <second_frame>  T  T  F  F  C  Y  I  K  I  I  S  S  H  F  F  F  T  K  I  S  P  L  Q  I  K  P  F  F  V  N  P  M  A  S  S  I  V  Q  N  G  H  V  N  G  E  A  M  D  L  C  K  K  S  I  N  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  V  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  A  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  G  K  G  T  D  S  Y  G  V  T  T  G  F  G  A  T  S  H  R  R  T  K  N  G  G  A  L  Q  K  E  L  I  R :   F  L  N  A  G  V  F  G  N  G  T  E  S  S  H  T  L :   P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  A  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  A  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  F  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  T  A  G  R  N  P  S  L  D  Y  G  L  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  R  S  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  M  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  L  R  V  V  D  R  E  Y  V  F  A  Y  A  D  D  P  C  S  S  T  Y  P  L  M  Q  K  L  R  Q  V  L  V  D  H  A  M  K  N  G  E  S  E  K  N  V  N  S  S  I  F  Q  K  I  V  A  F  E  D  E  L  K  A  A  L  P  K  E  V  E  S  A  R  A  V  V  E  S  G  N  P  A  I  P  N  R  I  T  E  C  R  S  Y  P  L  Y  R  L  V  R  Q  E  L  G  S  E  L  L  T  G  E  K  V  R  S  P  G  E  E  I  D  K  V  F  T  A  M  C  N  G  Q  I  I  D  P  L  L  E  C  L  K  S  W  N  G  A  P  L  P  I  C  *  M  F  V  K  S  Y  F  F  S  E  L  L  Q  L  *  *  S  L  N  C  M  F  I  Q  F  L  Q  L  Y  R  L  *  Y  I  S  L  C  L  </second_frame>
            <third_frame>   Q  H  F  F  V  I  *  K  *  S  L  A  I  F  F  S  L  K  F  L  H  Y  K  S  N  H  F  L  L  I  Q  W  H  H  Q  L  Y  K  M  D  M  L  M  E  K  P  W  I  Y  V  R  N  Q  L  M  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  K  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  S  K  W  N  F  L  K  V  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  W  G  K  V  Q  I  V  T  V  *  L  L  D  L  V  Q  H  L  I  E  E  L  K  M  V  V  H  F  K  R  N  L  S   : G  S  *  M  L  E  F  L  E  M  E  Q  N  H  L  I  L   : C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  S  C  Q  R  F  S  L  K  *  *  T  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  A  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  D  L  K  L  K  S  S  V  Q  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  T  H  *  S  M  F  Q  E  T  R  P  Y  T  V  E  T  S  K  V  P  L  L  V  S  P  W  I  I  Q  D  W  P  L  H  L  L  G  N  *  C  L  P  N  F  R  N  L  S  T  T  I  T  T  M  G  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  D  S  R  E  L  K  L  Q  W  L  L  T  A  Q  N  F  N  S  L  Q  I  Q  *  L  T  M  S  K  V  L  S  N  T  T  K  M  *  I  H  W  A  *  S  Q  Q  G  K  P  L  R  L  *  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  K  T  *  G  V  L  S  R  T  Q  *  A  K  *  L  R  E  L  *  Q  W  V  L  M  V  N  F  I  L  Q  D  S  A  R  R  N  C  F  E  L  W  T  G  N  T  C  L  P  M  L  M  I  P  A  A  P  P  T  L  *  C  R  S  *  D  K  S  L  L  I  M  Q  *  R  M  V  K  V  R  R  M  *  T  A  Q  S  S  K  R  L  *  L  S  R  T  N  *  R  P  R  C  L  K  K  L  R  V  Q  E  L  L  L  K  V  A  T  L  Q  F  L  T  G  S  Q  N  A  D  H  I  H  C  T  G  W  *  D  K  N  L  D  Q  N  F  *  Q  V  K  K  F  D  H  P  V  R  R  L  T  R  C  S  Q  Q  C  A  M  D  R  S  L  I  H  C  W  S  V  S  R  A  G  M  V  L  L  F  Q  S  A  R  C  L  S  S  L  I  F  S  V  N  Y  Y  N  Y  N  N  L  *  I  V  C  S  F  N  F  Y  N  F  T  G  Y  N  T  Y  L  C  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60265" stop="60773"/>
                    <exon start="61538" stop="61588"/>
                    <exon start="61718" stop="63287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2127</number_coding_nucleotides>
                  <number_encoded_amino_acids>709</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTFFCYIKIISSHFFFTKISPLQIKPFFVNPMASSIVQNGHVNGEAMDLCKKSINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILAVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTAGRNPSLDYGLKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLRSAVKNTVSQVAKRTLTMGANGELHPARFCEKELLRVVDREYVFAYADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNVNSSIFQKIVAFEDELKAALPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQELGSELLTGEKVRSPGEEIDKVFTAMCNGQIIDPLLECLKSWNGAPLPIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65314" e_stop="65351"/>
            <exon e_start="66538" e_stop="67028"/>
            <exon e_start="67192" e_stop="68539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.688"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="0.934"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.688">
            <gDNA_exon_boundary e_start="65314" e_stop="65351" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65352" i_stop="66537" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="66538" e_stop="67028" e_length="491"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="67192" e_stop="68539" e_length="1348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65314" stop="65351"/>
              <exon start="66538" stop="67028"/>
              <exon start="67192" stop="67312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65316" stop="65351"/>
              <exon start="66538" stop="67028"/>
              <exon start="67192" stop="67394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65316" stop="65351"/>
              <exon start="66538" stop="67028"/>
              <exon start="67192" stop="67222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65320" stop="65351"/>
              <exon start="66538" stop="67028"/>
              <exon start="67192" stop="67273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65320" stop="65351"/>
              <exon start="66538" stop="67028"/>
              <exon start="67192" stop="67242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="67028"/>
              <exon start="67192" stop="67350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="67028"/>
              <exon start="67192" stop="67254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="66978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66577" stop="67028"/>
              <exon start="67192" stop="67422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66579" stop="67024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67013" stop="67028"/>
              <exon start="67192" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67223" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67224" stop="67896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67237" stop="67527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67312" stop="67826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67533" stop="67891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67543" stop="68207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67611" stop="68328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67650" stop="68438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67962" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68067" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATACTTAATAATATTGACCAATATAAATAAAATTT : TTATAAGTTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAG : GTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAGCAATGCGGTCAAGAATACAGTGAGTCAAGTAGCTAAAAGAACTTTGACAGTAGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCCACAAGTTGTGGACAGGGAATACCTGTTTGCCTATGTTGATGATCCTTGC</gDNA_template>
            <first_frame> I  I  L  N  N  I  D  Q  Y  K  *  N  F :   Y  K  F  T  T  S  F  S  P  N  *  N  F  S  I  T  N  L  A  I  F  L  I  *  W  H  Q  L  Y  Q  M  D  M  L  M  E  K  L  *  P  W  I  Y  A  R  N  Q  L  L  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  L  K  *  N  F  L  K  A  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  *  A  K  V  Q  I  V  M  V  *  L  L  D  L  V  T  R  L  I  E  E  Q  Q  M  V  V  L  F  K  K  T  L  L   : G  S  *  M  L  E  C  W  G  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  F  Y  Q  R  F  S  L  K  *  *  M  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  A  L  K  L  K  S  S  A  *  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  I  H  *  S  M  F  Q  E  T  R  R  C  M  V  E  T  S  K  E  P  L  L  V  S  P  W  I  I  Q  D  *  P  L  H  Q  *  G  N  *  C  L  P  N  Y  R  S  L  S  T  T  I  T  T  M  D  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  V  S  R  E  L  K  S  R  W  L  L  T  A  R  N  F  N  S  L  Q  I  R  *  L  T  T  S  K  V  P  S  N  T  T  K  M  *  I  R  W  A  *  S  Q  Q  G  K  Q  L  R  L  L  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  R  T  *  A  M  R  S  R  I  Q  *  V  K  *  L  K  E  L  *  Q  *  V  L  M  V  N  F  I  Q  Q  D  S  A  K  R  N  C  H  K  L  W  T  G  N  T  C  L  P  M  L  M  I  L   </first_frame>
            <second_frame>  L  Y  L  I  I  L  T  N  I  N  K  I   : F  I  S  S  Q  H  H  F  L  L  I  K  I  S  P  L  Q  I  *  P  F  S  *  S  N  G  I  N  C  T  K  W  T  C  *  W  K  S  C  S  H  G  F  M  Q  E  I  N  Y  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  D  N  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  *  S  R  T  F  *  K  L  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  E  Q  R  Y  R  *  L  W  C  D  Y  W  I  W  *  H  V  S  *  K  N  N  K  W  *  C  S  S  K  R  P  Y  *  :  V  L  E  C  W  S  V  G  E  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  F  I  S  D  F  R  *  S  D  E  W  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  P  S  N  *  S  H  P  R  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  S  I  D  R  C  F  K  K  Q  G  V  A  W  W  K  L  P  R  N  P  Y  W  C  L  H  G  *  Y  K  I  S  P  C  I  N  R  E  I  D  V  C  P  I  I  G  A  C  Q  R  L  L  Q  Q  W  I  A  I  *  S  L  S  R  K  E  S  K  L  G  L  W  F  Q  G  S  *  N  R  D  G  F  L  L  L  G  T  S  I  P  C  K  S  G  D  *  P  R  P  K  C  R  A  T  Q  P  R  C  E  F  V  G  L  N  L  S  K  E  N  S  *  G  C  *  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  E  A  F  G  G  E  L  E  Q  C  G  Q  E  Y  S  E  S  S  S  *  K  N  F  D  S  R  C  *  W  *  T  S  S  S  K  I  L  R  K  G  I  A  T  S  C  G  Q  G  I  P  V  C  L  C  *  *  S  L  </second_frame>
            <third_frame>   Y  T  *  *  Y  *  P  I  *  I  K  F  :  L  *  V  H  N  I  I  F  S  *  L  K  F  L  H  Y  K  S  S  H  F  L  D  L  M  A  S  I  V  P  N  G  H  A  N  G  K  V  V  A  M  D  L  C  K  K  S  I  I  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  I  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  S  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  S  K  G  T  D  S  Y  G  V  T  T  G  F  G  D  T  S  H  R  R  T  T  N  G  S  A  L  Q  K  D  L  I  R :   F  L  N  A  G  V  L  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  V  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  V  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  L  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  S  A  G  R  N  P  S  L  D  Y  G  F  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  S  N  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  V  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  P  Q  V  V  D  R  E  Y  L  F  A  Y  V  D  D  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66568" stop="67028"/>
                    <exon start="67192" stop="68539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFLHYKSSHFLDLMASIVPNGHANGKVVAMDLCKKSIIVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTIAQVASIANVDNKSNGVKVELSESSRAGVKASSDWVMDSMSKGTDSYGVTTGFGDTSHRRTTNGSALQKDLIRFLNAGVLGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILVVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRVATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQLSELVNDYYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLSNAVKNTVSQVAKRTLTVGANGELHPARFCEKELPQVVDREYLFAYVDDPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="66338" e_stop="66377"/>
            <exon e_start="66545" e_stop="67028"/>
            <exon e_start="67192" e_stop="68539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.700"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="0.934"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="66338" e_stop="66377" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66378" i_stop="66544" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="66545" e_stop="67028" e_length="484"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="67192" e_stop="68539" e_length="1348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66338" stop="66377"/>
              <exon start="66545" stop="67028"/>
              <exon start="67192" stop="67393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="67028"/>
              <exon start="67192" stop="67350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="67028"/>
              <exon start="67192" stop="67254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="66978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66577" stop="67028"/>
              <exon start="67192" stop="67422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66579" stop="67024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67013" stop="67028"/>
              <exon start="67192" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67223" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67224" stop="67896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67237" stop="67527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67312" stop="67826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67533" stop="67891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67543" stop="68207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67611" stop="68328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67650" stop="68438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67962" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68067" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAATAATATTGATCAATATAAACAAAATTTGCCTCTTT : TTCACAACATCATTTTCTCCTAATTAAAATTTCTCCATTACAAATCTAGCCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAG : GTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAGCAATGCGGTCAAGAATACAGTGAGTCAAGTAGCTAAAAGAACTTTGACAGTAGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCCACAAGTTGTGGACAGGGAATACCTGTTTGCCTATGTTGATGATCCTTGC</gDNA_template>
            <first_frame> V  N  N  I  D  Q  Y  K  Q  N  L  P  L   : F  H  N  I  I  F  S  *  L  K  F  L  H  Y  K  S  S  H  F  L  D  L  M  A  S  I  V  P  N  G  H  A  N  G  K  V  V  A  M  D  L  C  K  K  S  I  I  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  I  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  S  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  S  K  G  T  D  S  Y  G  V  T  T  G  F  G  D  T  S  H  R  R  T  T  N  G  S  A  L  Q  K  D  L  I  R :   F  L  N  A  G  V  L  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  V  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  V  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  L  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  S  A  G  R  N  P  S  L  D  Y  G  F  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  S  N  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  V  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  P  Q  V  V  D  R  E  Y  L  F  A  Y  V  D  D  P  C </first_frame>
            <second_frame>  L  I  I  L  I  N  I  N  K  I  C  L  F  :  F  T  T  S  F  S  P  N  *  N  F  S  I  T  N  L  A  I  F  L  I  *  W  H  Q  L  Y  Q  M  D  M  L  M  E  K  L  *  P  W  I  Y  A  R  N  Q  L  L  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  L  K  *  N  F  L  K  A  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  *  A  K  V  Q  I  V  M  V  *  L  L  D  L  V  T  R  L  I  E  E  Q  Q  M  V  V  L  F  K  K  T  L  L   : G  S  *  M  L  E  C  W  G  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  F  Y  Q  R  F  S  L  K  *  *  M  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  A  L  K  L  K  S  S  A  *  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  I  H  *  S  M  F  Q  E  T  R  R  C  M  V  E  T  S  K  E  P  L  L  V  S  P  W  I  I  Q  D  *  P  L  H  Q  *  G  N  *  C  L  P  N  Y  R  S  L  S  T  T  I  T  T  M  D  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  V  S  R  E  L  K  S  R  W  L  L  T  A  R  N  F  N  S  L  Q  I  R  *  L  T  T  S  K  V  P  S  N  T  T  K  M  *  I  R  W  A  *  S  Q  Q  G  K  Q  L  R  L  L  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  R  T  *  A  M  R  S  R  I  Q  *  V  K  *  L  K  E  L  *  Q  *  V  L  M  V  N  F  I  Q  Q  D  S  A  K  R  N  C  H  K  L  W  T  G  N  T  C  L  P  M  L  M  I  L   </second_frame>
            <third_frame>   *  *  Y  *  S  I  *  T  K  F  A  S  F :   S  Q  H  H  F  L  L  I  K  I  S  P  L  Q  I  *  P  F  S  *  S  N  G  I  N  C  T  K  W  T  C  *  W  K  S  C  S  H  G  F  M  Q  E  I  N  Y  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  D  N  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  *  S  R  T  F  *  K  L  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  E  Q  R  Y  R  *  L  W  C  D  Y  W  I  W  *  H  V  S  *  K  N  N  K  W  *  C  S  S  K  R  P  Y  *  :  V  L  E  C  W  S  V  G  E  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  F  I  S  D  F  R  *  S  D  E  W  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  P  S  N  *  S  H  P  R  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  S  I  D  R  C  F  K  K  Q  G  V  A  W  W  K  L  P  R  N  P  Y  W  C  L  H  G  *  Y  K  I  S  P  C  I  N  R  E  I  D  V  C  P  I  I  G  A  C  Q  R  L  L  Q  Q  W  I  A  I  *  S  L  S  R  K  E  S  K  L  G  L  W  F  Q  G  S  *  N  R  D  G  F  L  L  L  G  T  S  I  P  C  K  S  G  D  *  P  R  P  K  C  R  A  T  Q  P  R  C  E  F  V  G  L  N  L  S  K  E  N  S  *  G  C  *  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  E  A  F  G  G  E  L  E  Q  C  G  Q  E  Y  S  E  S  S  S  *  K  N  F  D  S  R  C  *  W  *  T  S  S  S  K  I  L  R  K  G  I  A  T  S  C  G  Q  G  I  P  V  C  L  C  *  *  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66568" stop="67028"/>
                    <exon start="67192" stop="68539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFLHYKSSHFLDLMASIVPNGHANGKVVAMDLCKKSIIVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTIAQVASIANVDNKSNGVKVELSESSRAGVKASSDWVMDSMSKGTDSYGVTTGFGDTSHRRTTNGSALQKDLIRFLNAGVLGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILVVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRVATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQLSELVNDYYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLSNAVKNTVSQVAKRTLTVGANGELHPARFCEKELPQVVDREYLFAYVDDPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="60254" e_stop="60339"/>
            <exon e_start="66594" e_stop="67028"/>
            <exon e_start="67192" e_stop="68539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.564" e_score="0.872"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="0.940"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="60254" e_stop="60339" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="60340" i_stop="66593" i_length="6254"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="66594" e_stop="67028" e_length="435"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="67029" i_stop="67191" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="67192" e_stop="68539" e_length="1348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60254" stop="60339"/>
              <exon start="66594" stop="67028"/>
              <exon start="67192" stop="67427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67013" stop="67028"/>
              <exon start="67192" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67223" stop="67913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67224" stop="67896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67237" stop="67527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67312" stop="67826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67533" stop="67891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67543" stop="68207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67611" stop="68328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67650" stop="68438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67962" stop="68395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68067" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATAAGTTCACAACATTTTTTTGTTATATAAAAATAATCTCTAGCCATTTTTTTTTCACTAAAATTTCTCCATTACAAATCAAA : CCATTTTCTTGATCTAATGGCATCAATTGTACCAAATGGACATGCTAATGGAAAAGTTGTAGCCATGGATTTATGCAAGAAATCAATTATTGTTAATGATCCATTGAATTGGGAAATGGCTGCTGAATCATTAAGAGGGAGTCATTTGGATGAAGTGAAAAAGATGGTGGATGAATTTAGAAAGCCAATTGTGAAACTTGGGGGTGAAACTTTGACAATTGCACAAGTTGCATCCATTGCAAATGTTGATAACAAAAGTAATGGGGTTAAAGTAGAACTTTCTGAAAGCTCAAGGGCTGGTGTGAAAGCTAGTAGTGATTGGGTAATGGATAGTATGAGCAAAGGTACAGATAGTTATGGTGTGACTACTGGATTTGGTGACACGTCTCATAGAAGAACAACAAATGGTAGTGCTCTTCAAAAAGACCTTATTAG : GTTCTTGAATGCTGGAGTGTTGGGGAATGGAACAGAATCATCTCATACTTTGCCACATTCAGCAACAAGGGCAGCTATGCTTGTTAGGATCAATACTCTGCTTCAAGGCTACTCTGGCATTAGATTTGAAATTTTGGAAGCAATTACTAAGTTGATCAACAGCAACATTACCCCGTGTTTGCCCCTTCGTGGGACGATCACTGCATCGGGTGATCTTGTCCCGTTGTCATACATTGCTGGTTTGCTCACTGGCAGGCCTAACTCCAAGGCTGTTGGACCTAATGGTGAGAAACTTAATGCTGAGGAAGCGTTCCGCGTGGCTGGTGTTACTAGTGGATTTTTCGAGTTGCAGCCTAAGGAAGGACTTGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTATGGCATCAATGGTACTGTTTGAGTCCAACATTCTTGTTGTCATGTCTGAAGTTTTATCAGCGATTTTCGCTGAAGTGATGAATGGAAAGCCTGAATTCACTGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGGCCCTCAAATTGAAGTCATCCGCGTAGCAACTAAGATGATTGAGAGAGAGATTAACTCAGTGAACGACAATCCATTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGTGGAAACTTCCAAGGAACCCCTATTGGTGTCTCCATGGATAATACAAGATTAGCCCTTGCATCAATAGGGAAATTGATGTTTGCCCAATTATCGGAGCTTGTCAACGACTATTACAACAATGGATTGCCATCTAATCTCTCAGCAGGAAGGAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATCGCGATGGCTTCTTACTGCTCGGAACTTCAATTCCTTGCAAATCCGGTGACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAATTCGTTGGGCTTAATCTCAGCAAGGAAAACAGCTGAGGCTGTTGACATCTTGAAGCTAATGTCATCAACCTATCTCGTGGCGCTTTGCCAAGCTATCGACTTGAGGCATTTGGAGGAGAACTTGAGCAATGCGGTCAAGAATACAGTGAGTCAAGTAGCTAAAAGAACTTTGACAGTAGGTGCTAATGGTGAACTTCATCCAGCAAGATTCTGCGAAAAGGAATTGCCACAAGTTGTGGACAGGGAATACCTGTTTGCCTATGTTGATGATCCTTGC</gDNA_template>
            <first_frame> F  I  S  S  Q  H  F  F  V  I  *  K  *  S  L  A  I  F  F  S  L  K  F  L  H  Y  K  S  N :   H  F  L  D  L  M  A  S  I  V  P  N  G  H  A  N  G  K  V  V  A  M  D  L  C  K  K  S  I  I  V  N  D  P  L  N  W  E  M  A  A  E  S  L  R  G  S  H  L  D  E  V  K  K  M  V  D  E  F  R  K  P  I  V  K  L  G  G  E  T  L  T  I  A  Q  V  A  S  I  A  N  V  D  N  K  S  N  G  V  K  V  E  L  S  E  S  S  R  A  G  V  K  A  S  S  D  W  V  M  D  S  M  S  K  G  T  D  S  Y  G  V  T  T  G  F  G  D  T  S  H  R  R  T  T  N  G  S  A  L  Q  K  D  L  I  R :   F  L  N  A  G  V  L  G  N  G  T  E  S  S  H  T  L  P  H  S  A  T  R  A  A  M  L  V  R  I  N  T  L  L  Q  G  Y  S  G  I  R  F  E  I  L  E  A  I  T  K  L  I  N  S  N  I  T  P  C  L  P  L  R  G  T  I  T  A  S  G  D  L  V  P  L  S  Y  I  A  G  L  L  T  G  R  P  N  S  K  A  V  G  P  N  G  E  K  L  N  A  E  E  A  F  R  V  A  G  V  T  S  G  F  F  E  L  Q  P  K  E  G  L  A  L  V  N  G  T  A  V  G  S  G  M  A  S  M  V  L  F  E  S  N  I  L  V  V  M  S  E  V  L  S  A  I  F  A  E  V  M  N  G  K  P  E  F  T  D  Y  L  T  H  K  L  K  H  H  P  G  Q  I  E  A  A  A  I  M  E  H  I  L  D  G  S  S  Y  V  K  A  A  Q  K  L  H  E  M  D  P  L  Q  K  P  K  Q  D  R  Y  A  L  R  T  S  P  Q  W  L  G  P  Q  I  E  V  I  R  V  A  T  K  M  I  E  R  E  I  N  S  V  N  D  N  P  L  I  D  V  S  R  N  K  A  L  H  G  G  N  F  Q  G  T  P  I  G  V  S  M  D  N  T  R  L  A  L  A  S  I  G  K  L  M  F  A  Q  L  S  E  L  V  N  D  Y  Y  N  N  G  L  P  S  N  L  S  A  G  R  N  P  S  L  D  Y  G  F  K  G  A  E  I  A  M  A  S  Y  C  S  E  L  Q  F  L  A  N  P  V  T  N  H  V  Q  S  A  E  Q  H  N  Q  D  V  N  S  L  G  L  I  S  A  R  K  T  A  E  A  V  D  I  L  K  L  M  S  S  T  Y  L  V  A  L  C  Q  A  I  D  L  R  H  L  E  E  N  L  S  N  A  V  K  N  T  V  S  Q  V  A  K  R  T  L  T  V  G  A  N  G  E  L  H  P  A  R  F  C  E  K  E  L  P  Q  V  V  D  R  E  Y  L  F  A  Y  V  D  D  P  C </first_frame>
            <second_frame>  L  *  V  H  N  I  F  L  L  Y  K  N  N  L  *  P  F  F  F  H  *  N  F  S  I  T  N  Q   : T  I  F  L  I  *  W  H  Q  L  Y  Q  M  D  M  L  M  E  K  L  *  P  W  I  Y  A  R  N  Q  L  L  L  M  I  H  *  I  G  K  W  L  L  N  H  *  E  G  V  I  W  M  K  *  K  R  W  W  M  N  L  E  S  Q  L  *  N  L  G  V  K  L  *  Q  L  H  K  L  H  P  L  Q  M  L  I  T  K  V  M  G  L  K  *  N  F  L  K  A  Q  G  L  V  *  K  L  V  V  I  G  *  W  I  V  *  A  K  V  Q  I  V  M  V  *  L  L  D  L  V  T  R  L  I  E  E  Q  Q  M  V  V  L  F  K  K  T  L  L   : G  S  *  M  L  E  C  W  G  M  E  Q  N  H  L  I  L  C  H  I  Q  Q  Q  G  Q  L  C  L  L  G  S  I  L  C  F  K  A  T  L  A  L  D  L  K  F  W  K  Q  L  L  S  *  S  T  A  T  L  P  R  V  C  P  F  V  G  R  S  L  H  R  V  I  L  S  R  C  H  T  L  L  V  C  S  L  A  G  L  T  P  R  L  L  D  L  M  V  R  N  L  M  L  R  K  R  S  A  W  L  V  L  L  V  D  F  S  S  C  S  L  R  K  D  L  H  L  *  M  V  L  Q  L  V  L  V  W  H  Q  W  Y  C  L  S  P  T  F  L  L  S  C  L  K  F  Y  Q  R  F  S  L  K  *  *  M  E  S  L  N  S  L  T  I  *  H  T  S  *  S  I  T  L  A  R  L  R  L  L  L  L  W  N  T  F  W  M  E  A  L  M  S  R  Q  L  R  S  S  M  K  W  I  L  F  K  N  Q  S  K  I  V  M  L  F  E  H  L  H  S  G  L  A  L  K  L  K  S  S  A  *  Q  L  R  *  L  R  E  R  L  T  Q  *  T  T  I  H  *  S  M  F  Q  E  T  R  R  C  M  V  E  T  S  K  E  P  L  L  V  S  P  W  I  I  Q  D  *  P  L  H  Q  *  G  N  *  C  L  P  N  Y  R  S  L  S  T  T  I  T  T  M  D  C  H  L  I  S  Q  Q  E  G  I  Q  A  W  I  M  V  S  R  E  L  K  S  R  W  L  L  T  A  R  N  F  N  S  L  Q  I  R  *  L  T  T  S  K  V  P  S  N  T  T  K  M  *  I  R  W  A  *  S  Q  Q  G  K  Q  L  R  L  L  T  S  *  S  *  C  H  Q  P  I  S  W  R  F  A  K  L  S  T  *  G  I  W  R  R  T  *  A  M  R  S  R  I  Q  *  V  K  *  L  K  E  L  *  Q  *  V  L  M  V  N  F  I  Q  Q  D  S  A  K  R  N  C  H  K  L  W  T  G  N  T  C  L  P  M  L  M  I  L   </second_frame>
            <third_frame>   Y  K  F  T  T  F  F  C  Y  I  K  I  I  S  S  H  F  F  F  T  K  I  S  P  L  Q  I  K  :  P  F  S  *  S  N  G  I  N  C  T  K  W  T  C  *  W  K  S  C  S  H  G  F  M  Q  E  I  N  Y  C  *  *  S  I  E  L  G  N  G  C  *  I  I  K  R  E  S  F  G  *  S  E  K  D  G  G  *  I  *  K  A  N  C  E  T  W  G  *  N  F  D  N  C  T  S  C  I  H  C  K  C  *  *  Q  K  *  W  G  *  S  R  T  F  *  K  L  K  G  W  C  E  S  *  *  *  L  G  N  G  *  Y  E  Q  R  Y  R  *  L  W  C  D  Y  W  I  W  *  H  V  S  *  K  N  N  K  W  *  C  S  S  K  R  P  Y  *  :  V  L  E  C  W  S  V  G  E  W  N  R  I  I  S  Y  F  A  T  F  S  N  K  G  S  Y  A  C  *  D  Q  Y  S  A  S  R  L  L  W  H  *  I  *  N  F  G  S  N  Y  *  V  D  Q  Q  Q  H  Y  P  V  F  A  P  S  W  D  D  H  C  I  G  *  S  C  P  V  V  I  H  C  W  F  A  H  W  Q  A  *  L  Q  G  C  W  T  *  W  *  E  T  *  C  *  G  S  V  P  R  G  W  C  Y  *  W  I  F  R  V  A  A  *  G  R  T  C  T  C  E  W  Y  C  S  W  F  W  Y  G  I  N  G  T  V  *  V  Q  H  S  C  C  H  V  *  S  F  I  S  D  F  R  *  S  D  E  W  K  A  *  I  H  *  L  F  D  T  Q  V  E  A  S  P  W  P  D  *  G  C  C  Y  Y  G  T  H  F  G  W  K  L  L  C  Q  G  S  S  E  A  P  *  N  G  S  S  S  K  T  K  A  R  S  L  C  S  S  N  I  S  T  V  A  W  P  S  N  *  S  H  P  R  S  N  *  D  D  *  E  R  D  *  L  S  E  R  Q  S  I  D  R  C  F  K  K  Q  G  V  A  W  W  K  L  P  R  N  P  Y  W  C  L  H  G  *  Y  K  I  S  P  C  I  N  R  E  I  D  V  C  P  I  I  G  A  C  Q  R  L  L  Q  Q  W  I  A  I  *  S  L  S  R  K  E  S  K  L  G  L  W  F  Q  G  S  *  N  R  D  G  F  L  L  L  G  T  S  I  P  C  K  S  G  D  *  P  R  P  K  C  R  A  T  Q  P  R  C  E  F  V  G  L  N  L  S  K  E  N  S  *  G  C  *  H  L  E  A  N  V  I  N  L  S  R  G  A  L  P  S  Y  R  L  E  A  F  G  G  E  L  E  Q  C  G  Q  E  Y  S  E  S  S  S  *  K  N  F  D  S  R  C  *  W  *  T  S  S  S  K  I  L  R  K  G  I  A  T  S  C  G  Q  G  I  P  V  C  L  C  *  *  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60293" stop="60339"/>
                    <exon start="66594" stop="67028"/>
                    <exon start="67192" stop="68539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1830</number_coding_nucleotides>
                  <number_encoded_amino_acids>610</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLAIFFSLKFLHYKSNHFLDLMASIVPNGHANGKVVAMDLCKKSIIVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTIAQVASIANVDNKSNGVKVELSESSRAGVKASSDWVMDSMSKGTDSYGVTTGFGDTSHRRTTNGSALQKDLIRFLNAGVLGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFRVAGVTSGFFELQPKEGLALVNGTAVGSGMASMVLFESNILVVMSEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRVATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQLSELVNDYYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLSNAVKNTVSQVAKRTLTVGANGELHPARFCEKELPQVVDREYLFAYVDDPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="74161" PGL_stop="71510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74161" e_stop="74151"/>
            <exon e_start="73897" e_stop="73700"/>
            <exon e_start="72360" e_stop="72340"/>
            <exon e_start="71587" e_stop="71510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.857" acc_prob="1.000" e_score="0.727"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.905"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.727">
            <gDNA_exon_boundary e_start="74161" e_stop="74151" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.857" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74150" i_stop="73898" i_length="253"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73897" e_stop="73700" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73699" i_stop="72361" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="0.905">
            <gDNA_exon_boundary e_start="72360" e_stop="72340" e_length="21"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72339" i_stop="71588" i_length="752"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71587" e_stop="71510" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74161" stop="74151"/>
              <exon start="73897" stop="73700"/>
              <exon start="72360" stop="72340"/>
              <exon start="71587" stop="71510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAATAGAG : GAGGGCTAAAGAGAAATATATAGAAGATGTATGTAATAGTGATTTCATTGCCTTTGATTATATTGGTATTGATTGTAGCCATTGTTTGTTACATGTGTGGAAGATCAAGGGGTTGTTGCTGAATAAATTTCACTCCAAAATATTCTATTAATCGATGAAGCTAGAAGTCTGAATACAAATTTAAATATATTTATTTAA : AAAAAAAAAAAAAAAAACCAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAA</gDNA_template>
            <first_frame> Q  *  *  R :   R  A  K  E  K  Y  I  E  D  V  C  N  S  D  F  I  A  F  D  Y  I  G  I  D  C  S  H  C  L  L  H  V  W  K  I  K  G  L  L  L  N  K  F  H  S  K  I  F  Y  *  S  M  K  L  E  V  *  I  Q  I  *  I  Y  L  F  K :   K  K  K  K  K  T  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  K   </first_frame>
            <second_frame>  N  N  R   : G  G  L  K  R  N  I  *  K  M  Y  V  I  V  I  S  L  P  L  I  I  L  V  L  I  V  A  I  V  C  Y  M  C  G  R  S  R  G  C  C  *  I  N  F  T  P  K  Y  S  I  N  R  *  S  *  K  S  E  Y  K  F  K  Y  I  Y  L   : K  K  K  K  K  K  P   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  K  </second_frame>
            <third_frame>   I  I  E  :  E  G  *  R  E  I  Y  R  R  C  M  *  *  *  F  H  C  L  *  L  Y  W  Y  *  L  *  P  L  F  V  T  C  V  E  D  Q  G  V  V  A  E  *  I  S  L  Q  N  I  L  L  I  D  E  A  R  S  L  N  T  N  L  N  I  F  I  *  :  K  K  K  K  K  N  Q  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0130H12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74161" e_stop="74151"/>
            <exon e_start="73897" e_stop="73673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.857" acc_prob="1.000" e_score="0.727"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.727">
            <gDNA_exon_boundary e_start="74161" e_stop="74151" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.857" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74150" i_stop="73898" i_length="253"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="73897" e_stop="73673" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74161" stop="74151"/>
              <exon start="73897" stop="73673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAATAGAG : GAGGGCTAAAGAGAAATATATAGAAGATGTATGTAATAGTGATTTCATTGCCTTTGATTATATTGGTATTGATTGTAGCCATTGTTTGTTACATGTGTGGAAGATCAAGGGGTTGTTGCTGAATAAATTTCACTCCAAAATATTCTATTAATCGATGAAGCTAGAAGTCTGAATACAAATTTAAATATATTTATTTAAATCATATAGTAAATTTGTTATATTTGG</gDNA_template>
            <first_frame> Q  *  *  R :   R  A  K  E  K  Y  I  E  D  V  C  N  S  D  F  I  A  F  D  Y  I  G  I  D  C  S  H  C  L  L  H  V  W  K  I  K  G  L  L  L  N  K  F  H  S  K  I  F  Y  *  S  M  K  L  E  V  *  I  Q  I  *  I  Y  L  F  K  S  Y  S  K  F  V  I  F   </first_frame>
            <second_frame>  N  N  R   : G  G  L  K  R  N  I  *  K  M  Y  V  I  V  I  S  L  P  L  I  I  L  V  L  I  V  A  I  V  C  Y  M  C  G  R  S  R  G  C  C  *  I  N  F  T  P  K  Y  S  I  N  R  *  S  *  K  S  E  Y  K  F  K  Y  I  Y  L  N  H  I  V  N  L  L  Y  L  </second_frame>
            <third_frame>   I  I  E  :  E  G  *  R  E  I  Y  R  R  C  M  *  *  *  F  H  C  L  *  L  Y  W  Y  *  L  *  P  L  F  V  T  C  V  E  D  Q  G  V  V  A  E  *  I  S  L  Q  N  I  L  L  I  D  E  A  R  S  L  N  T  N  L  N  I  F  I  *  I  I  *  *  I  C  Y  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0130H12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="73135" PGL_stop="76291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75652" e_stop="76291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="75652" e_stop="76291" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75652" stop="76238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75655" stop="76291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCATATCTTGTAATAACATCTTTTCCCGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACAGTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGATGGGGGTGAATAAGCTGCAAAGATTCAAAATACACATGAGGTGCAAGGGAGGTATAGTTGGGGAGGGGGGGATAATTCACAGAAACTAAGAACAAGTCTAACAATGGTGATCTCACCAGTCATTTGCTATGAACTGAGAAAAGAGCGTTACAAGACGAAAGGGGGTGATGAGGCAGACAGCGTTACTTTGCGCGGTCCGGCGACTCCAGCCACCTCCTGGTTTCCTACCGGCTTATTGGATAATCGACGTTTATAGCGCTTGAGGACGGATGCCAGGTTCTCTTTTCCTTTAGGAAAGGCTACATCCCCTGCTGCAGTGCCCGTTCGTCCCTTTCGACAGGAAATTGCTGTCTCCACGTCTTTGATCATCTCTAAGAGCATTGCTGCAGTCGTGCATTTTCCTCGACCCTGTTTTGCTTGTGGCGGCAAGTTTCCATTAGAAATTGGAGGGGGGCTTGCCTTTTGCTGGCGGCCAGCCGGAATTTGAAGACAAAAACAATGGCTCGTCGGAGAATGGGGCT</gDNA_template>
            <first_frame> C  I  S  C  N  N  I  F  S  R  L  L  A  R  F  I  S  P  L  Q  F  Y  S  N  L  V  T  T  F  Y  P  M  Y  T  D  *  G  T  R  D  G  G  E  *  A  A  K  I  Q  N  T  H  E  V  Q  G  R  Y  S  W  G  G  G  D  N  S  Q  K  L  R  T  S  L  T  M  V  I  S  P  V  I  C  Y  E  L  R  K  E  R  Y  K  T  K  G  G  D  E  A  D  S  V  T  L  R  G  P  A  T  P  A  T  S  W  F  P  T  G  L  L  D  N  R  R  L  *  R  L  R  T  D  A  R  F  S  F  P  L  G  K  A  T  S  P  A  A  V  P  V  R  P  F  R  Q  E  I  A  V  S  T  S  L  I  I  S  K  S  I  A  A  V  V  H  F  P  R  P  C  F  A  C  G  G  K  F  P  L  E  I  G  G  G  L  A  F  C  W  R  P  A  G  I  *  R  Q  K  Q  W  L  V  G  E  W  G  </first_frame>
            <second_frame>  A  Y  L  V  I  T  S  F  P  A  F  *  P  V  S  F  H  H  C  S  F  T  V  T  S  L  Q  H  F  I  L  C  I  Q  I  E  V  Q  G  M  G  V  N  K  L  Q  R  F  K  I  H  M  R  C  K  G  G  I  V  G  E  G  G  I  I  H  R  N  *  E  Q  V  *  Q  W  *  S  H  Q  S  F  A  M  N  *  E  K  S  V  T  R  R  K  G  V  M  R  Q  T  A  L  L  C  A  V  R  R  L  Q  P  P  P  G  F  L  P  A  Y  W  I  I  D  V  Y  S  A  *  G  R  M  P  G  S  L  F  L  *  E  R  L  H  P  L  L  Q  C  P  F  V  P  F  D  R  K  L  L  S  P  R  L  *  S  S  L  R  A  L  L  Q  S  C  I  F  L  D  P  V  L  L  V  A  A  S  F  H  *  K  L  E  G  G  L  P  F  A  G  G  Q  P  E  F  E  D  K  N  N  G  S  S  E  N  G  A </second_frame>
            <third_frame>   H  I  L  *  *  H  L  F  P  P  F  S  P  F  H  F  T  I  A  V  L  Q  *  P  R  Y  N  I  L  S  Y  V  Y  R  L  R  Y  K  G  W  G  *  I  S  C  K  D  S  K  Y  T  *  G  A  R  E  V  *  L  G  R  G  G  *  F  T  E  T  K  N  K  S  N  N  G  D  L  T  S  H  L  L  *  T  E  K  R  A  L  Q  D  E  R  G  *  *  G  R  Q  R  Y  F  A  R  S  G  D  S  S  H  L  L  V  S  Y  R  L  I  G  *  S  T  F  I  A  L  E  D  G  C  Q  V  L  F  S  F  R  K  G  Y  I  P  C  C  S  A  R  S  S  L  S  T  G  N  C  C  L  H  V  F  D  H  L  *  E  H  C  C  S  R  A  F  S  S  T  L  F  C  L  W  R  Q  V  S  I  R  N  W  R  G  A  C  L  L  L  A  A  S  R  N  L  K  T  K  T  M  A  R  R  R  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75784" stop="76026"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAKIQNTHEVQGRYSWGGGDNSQKLRTSLTMVISPVICYELRKERYKTKGGDEADSVTLRGPATPATSWFPTGLLDNRRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76027" stop="76257"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRTDARFSFPLGKATSPAAVPVRPFRQEIAVSTSLIISKSIAAVVHFPRPCFACGGKFPLEIGGGLAFCWRPAGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73135" e_stop="73163"/>
            <exon e_start="75665" e_stop="75823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.690"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.690">
            <gDNA_exon_boundary e_start="73135" e_stop="73163" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73164" i_stop="75664" i_length="2501"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="75665" e_stop="75823" e_length="159"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73135" stop="73163"/>
              <exon start="75665" stop="75823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229552" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATGCATTTTTTTTTTAATTATATGAT : ATAACATCTTTTCCCGCCTTTTAGCCCGTTTCATTTCACCATTGCAGTTTTACAGTAACCTCGTTACAACATTTTATCCTATGTATACAGATTGAGGTACAAGGGATGGGGGTGAATAAGCTGCAAAGATTCAAAATACACATGAGGTGCAAGGGAGGT</gDNA_template>
            <first_frame> Y  M  H  F  F  F  N  Y  M  I :   *  H  L  F  P  P  F  S  P  F  H  F  T  I  A  V  L  Q  *  P  R  Y  N  I  L  S  Y  V  Y  R  L  R  Y  K  G  W  G  *  I  S  C  K  D  S  K  Y  T  *  G  A  R  E   </first_frame>
            <second_frame>  T  C  I  F  F  L  I  I  *   : Y  N  I  F  S  R  L  L  A  R  F  I  S  P  L  Q  F  Y  S  N  L  V  T  T  F  Y  P  M  Y  T  D  *  G  T  R  D  G  G  E  *  A  A  K  I  Q  N  T  H  E  V  Q  G  R  </second_frame>
            <third_frame>   H  A  F  F  F  *  L  Y  D  :  I  T  S  F  P  A  F  *  P  V  S  F  H  H  C  S  F  T  V  T  S  L  Q  H  F  I  L  C  I  Q  I  E  V  Q  G  M  G  V  N  K  L  Q  R  F  K  I  H  M  R  C  K  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0130H12.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="81692" PGL_stop="75051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81692" e_stop="81656"/>
            <exon e_start="81564" e_stop="81454"/>
            <exon e_start="81330" e_stop="81118"/>
            <exon e_start="79755" e_stop="79570"/>
            <exon e_start="79479" e_stop="76777"/>
            <exon e_start="76316" e_stop="75655"/>
            <exon e_start="75101" e_stop="75059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.926" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.995"/>
          <exon-intron don_prob="0.529" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.829" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="0.995"/>
          <exon-only e_score="0.488"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81692" e_stop="81656" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="81655" i_stop="81565" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="81564" e_stop="81454" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.926">
            <gDNA_intron_boundary i_start="81453" i_stop="81331" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="81330" e_stop="81118" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81117" i_stop="79756" i_length="1362"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79755" e_stop="79570" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.529" acc_prob="0.975">
            <gDNA_intron_boundary i_start="79569" i_stop="79480" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="79479" e_stop="76777" e_length="2703"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.829">
            <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="76316" e_stop="75655" e_length="662"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="75654" i_stop="75102" i_length="553"/>
          </intron>
          <exon e_serial="7" e_score="0.488">
            <gDNA_exon_boundary e_start="75101" e_stop="75059" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81692" stop="81656"/>
              <exon start="81564" stop="81454"/>
              <exon start="81330" stop="81118"/>
              <exon start="79755" stop="79570"/>
              <exon start="79479" stop="76777"/>
              <exon start="76316" stop="75655"/>
              <exon start="75101" stop="75059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79025" stop="76777"/>
              <exon start="76316" stop="75655"/>
              <exon start="75101" stop="75059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78484" stop="77727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78484" stop="78123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78428" stop="77720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78119" stop="77517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="77055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="77317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77578" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77576" stop="77222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77451" stop="76938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77309" stop="76777"/>
              <exon start="76316" stop="76046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="76777"/>
              <exon start="76316" stop="75995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77113" stop="76777"/>
              <exon start="76316" stop="75953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77109" stop="76777"/>
              <exon start="76316" stop="76281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77006" stop="76777"/>
              <exon start="76316" stop="75825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGAGGTTTCGATGATTGCTTTGGACCTCACAATG : GTTTTGGGCACTGCCCATGGGCTTAATGTTGTGTTTGGAGTTGACCTGTTTAGCTGTGTTTTCCTGACTGCAACCGGTGCCATTTTGTTTCCACTGCTTGCTTCTCTCTTT : GACAATGGCAGTGCAAAATTCTTATGTATTGGCTGGGCAAGCTCTGTACTGCTCTCTTATGTTTTTGGAGTGGTTATAACTCTACCTGAAACTCCATTCTCCATTGGTGGTGTGCTGAATAAGTTTAGTGGAGAGAGTGCATTTGCATTGATGAGTCTTCTTGGAGCAAGTATTATGCCTCACAATTTTTACCTCCATTCTTCTATTGTACAG : CAAGGTAAGGAATCAACAGAGCTTTCCAGGGGAGCTCTGTGTCAGGACCATTTTTTTGCCATTGTTTTCATATTCAGTGGCATTTTCCTGGTCAACTATGCCGCGATGAATTCAGCAGCGAATGTGTCTTACAGTACTGGCCTTTTGTTGCTGACATTTCAGGACACATTGTCATTGCTCGATCAG : GTTTTCAGAAGCTCAGTTGCACCATTCACCATAATGCTGGTTACATTTATTTCCAATCAAGTTACACCACTAACTTGGGATCTTGGTAGACAAGCAGTTGTGCATGACTTATTTGGAATGGACATCCCAGGCTGGCTTCATCATGTGACGATCAGAGTTATTTCCATTGTCCCAGCTCTTTATTGTGTATGGAGTTCAGGAGCTGAAGGCCTATATCAGTTACTTATACTGACACAGGTTGTGGTGGCTCTTGTCCTTCCATCTTCTGTCATACCCCTGTTCAGAGTTGCTTCTTCCAGATCAATTATGGGTATCCACAAAATTTCTCAGTTAATGGAGTTCTTATCTCTTGGCACATTTATTGGCTTACTTGGCCTAAAGATTATATTTGTCATAGAGATGATATTTGGAAATAGTGATTGGGTTAATAATTTGAAGTGGAATATTGGGAGTAGTGTGTCTACTCCATATGTTTTTCTCCTCATCGCAGCCTCTTTATGTCTTTGTCTGATGCTGTGGTTAGCAGTTACTCCTCTGAAATCTGCAAGTTCCAGGTTCGATGCTCAGGCGTTTCTGCAAACGCATGTGCCTGAGCCATATTCAGAGTGTAATCAACTTGGTGCGAGTAATGCTATGTTTGGTCTAGTAGAAGGATCCTCCCAAAAGCAAGAAGGTGCATTTCATGTGGAAAAATCCTTGGTAACCCATCCAGATTTATCAACTAAAGATCCTGATCAACTCTTGCCAGAATCTCTCTTGGATTTTGAAAAGGTCCATCAGTTGGCTACTATTGATGAGAGCAAATCTGAAACAACATTTTCAGCTCCTGCTGTCGTTCATCCTGAGGTACCTGTATCAGCAGGAGCAAGTCCCAGTGTGAAAAGTGTTTGTAATGAGGTTTCTGGTGTTGTATCAGTGGATACCAGTGTCTTCAATACTGAAACTGTGGATGTCGCAGAGAAGACTCTCAGAATTGAAGGGGACATGGCAAATGACAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG : GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATAT : ATTTGTGACCTAATTGCAATAAAAGGAGTATAAAGATCAAAAA</gDNA_template>
            <first_frame> S  *  G  F  D  D  C  F  G  P  H  N   : G  F  G  H  C  P  W  A  *  C  C  V  W  S  *  P  V  *  L  C  F  P  D  C  N  R  C  H  F  V  S  T  A  C  F  S  L   : *  Q  W  Q  C  K  I  L  M  Y  W  L  G  K  L  C  T  A  L  L  C  F  W  S  G  Y  N  S  T  *  N  S  I  L  H  W  W  C  A  E  *  V  *  W  R  E  C  I  C  I  D  E  S  S  W  S  K  Y  Y  A  S  Q  F  L  P  P  F  F  Y  C  T   : A  R  *  G  I  N  R  A  F  Q  G  S  S  V  S  G  P  F  F  C  H  C  F  H  I  Q  W  H  F  P  G  Q  L  C  R  D  E  F  S  S  E  C  V  L  Q  Y  W  P  F  V  A  D  I  S  G  H  I  V  I  A  R  S   : G  F  Q  K  L  S  C  T  I  H  H  N  A  G  Y  I  Y  F  Q  S  S  Y  T  T  N  L  G  S  W  *  T  S  S  C  A  *  L  I  W  N  G  H  P  R  L  A  S  S  C  D  D  Q  S  Y  F  H  C  P  S  S  L  L  C  M  E  F  R  S  *  R  P  I  S  V  T  Y  T  D  T  G  C  G  G  S  C  P  S  I  F  C  H  T  P  V  Q  S  C  F  F  Q  I  N  Y  G  Y  P  Q  N  F  S  V  N  G  V  L  I  S  W  H  I  Y  W  L  T  W  P  K  D  Y  I  C  H  R  D  D  I  W  K  *  *  L  G  *  *  F  E  V  E  Y  W  E  *  C  V  Y  S  I  C  F  S  P  H  R  S  L  F  M  S  L  S  D  A  V  V  S  S  Y  S  S  E  I  C  K  F  Q  V  R  C  S  G  V  S  A  N  A  C  A  *  A  I  F  R  V  *  S  T  W  C  E  *  C  Y  V  W  S  S  R  R  I  L  P  K  A  R  R  C  I  S  C  G  K  I  L  G  N  P  S  R  F  I  N  *  R  S  *  S  T  L  A  R  I  S  L  G  F  *  K  G  P  S  V  G  Y  Y  *  *  E  Q  I  *  N  N  I  F  S  S  C  C  R  S  S  *  G  T  C  I  S  R  S  K  S  Q  C  E  K  C  L  *  *  G  F  W  C  C  I  S  G  Y  Q  C  L  Q  Y  *  N  C  G  C  R  R  E  D  S  Q  N  *  R  G  H  G  K  *  Q  G  *  W  R  F  V  G  R  A  *  R  G  N  Q  R  S  I  *  E  R  S  I  F  Y  F  *  W  S  G  V  I  Q  K  S  K  W  K  T  R  G  H  G  E  W  Y  R  K  S  I  K  I  S  R  S  W  S  C  S  *  E  A  V  N  R  S  S  K  *  V  L  G  A  A  F  *  L  P  W  H  G  N  S  R  S  E  V  Q  E  T  G  Y  N  T  W  S  G  F  K  D  E  S  K  T  C  P  C  I  I  K  S  *  K  Q  C  V  Y  S  I  G  E  C  K  D  T  R  A  S  D  Q  L  A  C  V  L  S  Q  A  A  I  C  V  *  H  C  G  L  C  L  *  S  P  K  G  A  I  F  D  I  F  Y  V  V  *  P  Y  E  I  S  R  C  I  C  A  K  F  Q  Q  Q  H  A  *  L  R  G  E  A  L  F  *  Y  A  D  S  S  D  F  C  W  L  *  S  A  A  C  H  C  A  W  I  S  D  Y  C  L  P  *  S  T  C  E  R  K  R  I  *  L  F  K  W  A  T  G  V  T  I  S  S  F  C  I  I  T  D  V  K  L  C  R  T  I  G  S  C  F  G  A  K  T  S  E  W  S  Q  *  S  S  T  T  W  F  W  K  C  P  C  R  P  K  *  F  D  A  A  H  *  H  Y  F  C  R  P  *  L  Y  *  N  C  *  K  R  G  W  F  S  Q  L  *  E  V  L  Q  L  A  *  Y  L  R  A  L  C  S  S  P  R  F  Y  S  V  R  C  E  S  S  M  V  Q  F  H  G  I  R  T  I  W  W  S  I  Y  I  R  T  S  L  Y  E  W  F  T  K  G  R  W  S  S  E  V  *  T  F  S  *  S  L  Q  R  C  I  L  L  A  V  Q  L  Q  F  R  D  W  I  P  V  V  *  T  A  F  *  A  I  W  C  S  W  *  A  R  C  W  *  R  R  S  W  N  C  A  E  F  L  C  S  R  E  Y  I  Y  G  *  L  G  S  *  A  A  S  V  F  Q  K  L  Y  C  E  T  F  E  T  G  R  I  *  V  V  I  *  A  R  *  W  G  *  *  G  S  Y  R  S  D  C  C  K  R  E  I  S  L  *  S  *  N  *  G  D  K  *  I  D  Q  H  W  *  I  T  L  L  F  Q  Q  E  T  R  F  C  P  K  T  *  R  D  G  L  H  Q  V  L  G  D  V  S  S  P  L  R  R  R  L  C  L  E  S  R  S  D  Y  K  L  R  C  V  V  H  S  Q  N  S  *  A  F  T  Y  G  K  *  A  R  V  V  G  Q  I  Y  L  C  S  Q  P  S  S   : G  H  S  R  S  G  I  F  K  A  P  F  S  D  E  P  L  F  L  S  S  N  S  G  W  P  P  A  K  G  K  P  P  S  N  F  *  W  K  L  A  A  T  S  K  T  G  S  R  K  M  H  D  C  S  N  A  L  R  D  D  Q  R  R  G  D  S  N  F  L  S  K  G  T  N  G  H  C  S  R  G  C  S  L  S  *  R  K  R  E  P  G  I  R  P  Q  A  L  *  T  S  I  I  Q  *  A  G  R  K  P  G  G  G  W  S  R  R  T  A  Q  S  N  A  V  C  L  I  T  P  F  R  L  V  T  L  F  S  Q  F  I  A  N  D  W  *  D  H  H  C  *  T  C  S  *  F  L  *  I  I  P  P  S  P  T  I  P  P  L  H  L  M  C  I  L  N  L  C  S  L  F  T  P  I  P  C  T  S  I  C  I  H  R  I  K  C  C  N  E  V  T  V  K  L  Q  W  *  N  E  T  G  *  K  A  G  K  D  V  I  T  R  Y  :  I  C  D  L  I  A  I  K  G  V  *  R  S  K  </first_frame>
            <second_frame>  A  E  V  S  M  I  A  L  D  L  T  M  :  V  L  G  T  A  H  G  L  N  V  V  F  G  V  D  L  F  S  C  V  F  L  T  A  T  G  A  I  L  F  P  L  L  A  S  L  F  :  D  N  G  S  A  K  F  L  C  I  G  W  A  S  S  V  L  L  S  Y  V  F  G  V  V  I  T  L  P  E  T  P  F  S  I  G  G  V  L  N  K  F  S  G  E  S  A  F  A  L  M  S  L  L  G  A  S  I  M  P  H  N  F  Y  L  H  S  S  I  V  Q  :  Q  G  K  E  S  T  E  L  S  R  G  A  L  C  Q  D  H  F  F  A  I  V  F  I  F  S  G  I  F  L  V  N  Y  A  A  M  N  S  A  A  N  V  S  Y  S  T  G  L  L  L  L  T  F  Q  D  T  L  S  L  L  D  Q  :  V  F  R  S  S  V  A  P  F  T  I  M  L  V  T  F  I  S  N  Q  V  T  P  L  T  W  D  L  G  R  Q  A  V  V  H  D  L  F  G  M  D  I  P  G  W  L  H  H  V  T  I  R  V  I  S  I  V  P  A  L  Y  C  V  W  S  S  G  A  E  G  L  Y  Q  L  L  I  L  T  Q  V  V  V  A  L  V  L  P  S  S  V  I  P  L  F  R  V  A  S  S  R  S  I  M  G  I  H  K  I  S  Q  L  M  E  F  L  S  L  G  T  F  I  G  L  L  G  L  K  I  I  F  V  I  E  M  I  F  G  N  S  D  W  V  N  N  L  K  W  N  I  G  S  S  V  S  T  P  Y  V  F  L  L  I  A  A  S  L  C  L  C  L  M  L  W  L  A  V  T  P  L  K  S  A  S  S  R  F  D  A  Q  A  F  L  Q  T  H  V  P  E  P  Y  S  E  C  N  Q  L  G  A  S  N  A  M  F  G  L  V  E  G  S  S  Q  K  Q  E  G  A  F  H  V  E  K  S  L  V  T  H  P  D  L  S  T  K  D  P  D  Q  L  L  P  E  S  L  L  D  F  E  K  V  H  Q  L  A  T  I  D  E  S  K  S  E  T  T  F  S  A  P  A  V  V  H  P  E  V  P  V  S  A  G  A  S  P  S  V  K  S  V  C  N  E  V  S  G  V  V  S  V  D  T  S  V  F  N  T  E  T  V  D  V  A  E  K  T  L  R  I  E  G  D  M  A  N  D  R  D  D  G  D  S  W  E  E  P  E  E  A  I  K  G  V  S  E  N  A  Q  S  F  I  S  D  G  P  G  S  Y  K  S  L  S  G  K  L  E  D  T  G  S  G  T  G  S  L  S  R  L  A  G  L  G  R  A  A  R  R  Q  L  T  E  A  L  N  E  F  W  G  Q  L  F  D  Y  H  G  M  A  T  A  E  A  K  S  K  K  L  D  I  I  L  G  L  D  S  K  M  N  P  K  P  A  P  A  S  L  K  V  E  S  S  A  Y  I  P  S  G  S  A  R  I  P  E  P  L  I  N  S  H  V  Y  S  P  K  Q  Q  F  A  S  N  I  V  D  S  A  Y  R  V  P  K  E  P  S  S  T  S  S  M  W  S  N  H  M  K  L  V  G  A  Y  V  Q  S  S  N  S  N  M  L  D  S  G  E  R  R  Y  S  S  M  R  I  P  A  T  S  A  G  Y  D  Q  Q  P  A  T  V  H  G  Y  Q  I  T  A  Y  L  N  Q  L  A  K  E  R  G  S  D  Y  L  N  G  Q  L  E  S  P  S  P  R  S  V  S  S  L  T  S  N  Y  A  E  P  L  A  R  V  S  G  Q  K  P  Q  S  G  V  S  S  R  A  P  P  G  F  G  N  V  P  V  G  R  N  N  S  M  Q  P  T  N  T  T  S  V  D  H  S  S  T  E  T  A  E  S  V  A  G  S  A  N  S  K  K  Y  Y  S  L  P  D  I  S  G  R  Y  V  P  R  Q  D  S  I  V  S  D  A  R  A  Q  W  Y  N  S  M  G  F  G  Q  S  G  G  R  S  T  Y  E  Q  A  Y  M  S  G  S  L  R  A  G  G  P  Q  R  Y  E  H  S  P  K  V  C  R  D  A  F  S  L  Q  Y  S  S  N  S  G  T  G  S  L  W  S  R  Q  P  F  E  Q  F  G  V  A  G  K  P  D  V  G  S  G  D  H  G  T  V  L  S  S  S  A  Q  E  S  T  S  T  V  D  L  E  A  K  L  L  Q  S  F  R  S  C  I  V  K  L  L  K  L  E  G  S  E  W  L  F  R  Q  D  D  G  A  D  E  D  L  I  G  R  I  A  A  R  E  K  F  L  Y  E  A  E  T  R  E  I  S  R  L  T  N  I  G  E  S  H  F  S  S  N  R  K  P  G  S  A  P  K  P  E  E  M  D  Y  T  K  F  L  V  M  S  V  P  H  C  G  E  G  C  V  W  K  V  D  L  I  I  S  F  G  V  W  C  I  H  R  I  L  E  L  S  L  M  E  S  R  P  E  L  W  G  K  Y  T  Y  V  L  N  R  L  Q  :  G  I  V  D  L  A  F  S  K  P  H  S  P  T  S  H  C  F  C  L  Q  I  P  A  G  R  Q  Q  K  A  S  P  P  P  I  S  N  G  N  L  P  P  Q  A  K  Q  G  R  G  K  C  T  T  A  A  M  L  L  E  M  I  K  D  V  E  T  A  I  S  C  R  K  G  R  T  G  T  A  A  G  D  V  A  F  P  K  G  K  E  N  L  A  S  V  L  K  R  Y  K  R  R  L  S  N  K  P  V  G  N  Q  E  V  A  G  V  A  G  P  R  K  V  T  L  S  A  S  S  P  P  F  V  L  *  R  S  F  L  S  S  *  Q  M  T  G  E  I  T  I  V  R  L  V  L  S  F  C  E  L  S  P  P  P  Q  L  Y  L  P  C  T  S  C  V  F  *  I  F  A  A  Y  S  P  P  S  L  V  P  Q  S  V  Y  I  G  *  N  V  V  T  R  L  L  *  N  C  N  G  E  M  K  R  A  K  R  R  E  K  M  L  L  Q  D  I :   F  V  T  *  L  Q  *  K  E  Y  K  D  Q  K </second_frame>
            <third_frame>   L  R  F  R  *  L  L  W  T  S  Q  W :   F  W  A  L  P  M  G  L  M  L  C  L  E  L  T  C  L  A  V  F  S  *  L  Q  P  V  P  F  C  F  H  C  L  L  L  S  L :   T  M  A  V  Q  N  S  Y  V  L  A  G  Q  A  L  Y  C  S  L  M  F  L  E  W  L  *  L  Y  L  K  L  H  S  P  L  V  V  C  *  I  S  L  V  E  R  V  H  L  H  *  *  V  F  L  E  Q  V  L  C  L  T  I  F  T  S  I  L  L  L  Y  S :   K  V  R  N  Q  Q  S  F  P  G  E  L  C  V  R  T  I  F  L  P  L  F  S  Y  S  V  A  F  S  W  S  T  M  P  R  *  I  Q  Q  R  M  C  L  T  V  L  A  F  C  C  *  H  F  R  T  H  C  H  C  S  I  R :   F  S  E  A  Q  L  H  H  S  P  *  C  W  L  H  L  F  P  I  K  L  H  H  *  L  G  I  L  V  D  K  Q  L  C  M  T  Y  L  E  W  T  S  Q  A  G  F  I  M  *  R  S  E  L  F  P  L  S  Q  L  F  I  V  Y  G  V  Q  E  L  K  A  Y  I  S  Y  L  Y  *  H  R  L  W  W  L  L  S  F  H  L  L  S  Y  P  C  S  E  L  L  L  P  D  Q  L  W  V  S  T  K  F  L  S  *  W  S  S  Y  L  L  A  H  L  L  A  Y  L  A  *  R  L  Y  L  S  *  R  *  Y  L  E  I  V  I  G  L  I  I  *  S  G  I  L  G  V  V  C  L  L  H  M  F  F  S  S  S  Q  P  L  Y  V  F  V  *  C  C  G  *  Q  L  L  L  *  N  L  Q  V  P  G  S  M  L  R  R  F  C  K  R  M  C  L  S  H  I  Q  S  V  I  N  L  V  R  V  M  L  C  L  V  *  *  K  D  P  P  K  S  K  K  V  H  F  M  W  K  N  P  W  *  P  I  Q  I  Y  Q  L  K  I  L  I  N  S  C  Q  N  L  S  W  I  L  K  R  S  I  S  W  L  L  L  M  R  A  N  L  K  Q  H  F  Q  L  L  L  S  F  I  L  R  Y  L  Y  Q  Q  E  Q  V  P  V  *  K  V  F  V  M  R  F  L  V  L  Y  Q  W  I  P  V  S  S  I  L  K  L  W  M  S  Q  R  R  L  S  E  L  K  G  T  W  Q  M  T  G  M  M  E  I  R  G  K  S  L  K  R  Q  S  K  E  Y  L  R  T  L  N  L  L  F  L  M  V  R  G  H  T  K  V  *  V  E  N  *  R  T  R  G  V  V  Q  E  V  Y  Q  D  *  Q  V  L  V  V  Q  L  G  G  S  *  Q  K  L  *  M  S  F  G  G  S  F  L  I  T  M  A  W  Q  Q  Q  K  R  S  P  R  N  W  I  *  Y  L  V  W  I  Q  R  *  I  Q  N  L  P  L  H  H  *  K  L  K  A  V  R  I  F  H  R  G  V  Q  G  Y  Q  S  L  *  S  T  R  M  C  T  L  P  S  S  N  L  R  L  T  L  W  T  L  L  I  E  S  Q  R  S  H  L  R  H  L  L  C  G  L  T  I  *  N  *  *  V  H  M  C  K  V  P  T  A  T  C  L  T  Q  G  R  G  A  I  L  V  C  G  F  Q  R  L  L  L  A  M  I  S  S  L  P  L  C  M  D  I  R  L  L  L  T  L  I  N  L  R  K  K  E  D  L  I  I  *  M  G  N  W  S  H  H  L  L  V  L  Y  H  H  *  R  Q  T  M  Q  N  H  W  L  V  F  R  G  K  N  L  R  V  E  S  V  V  E  H  H  L  V  L  E  M  S  L  *  A  E  I  I  R  C  S  P  L  T  L  L  L  S  T  I  A  L  L  K  L  L  K  A  W  L  V  Q  P  T  L  R  S  T  T  A  C  L  I  S  Q  G  A  M  F  L  A  K  I  L  *  C  Q  M  R  E  L  N  G  T  I  P  W  D  S  D  N  L  V  V  D  L  H  T  N  K  P  I  *  V  V  H  *  G  Q  V  V  L  R  G  M  N  I  L  L  K  S  A  E  M  H  S  P  C  S  T  A  P  I  Q  G  L  D  P  C  G  L  D  S  L  L  S  N  L  V  *  L  V  S  Q  M  L  V  A  A  I  M  E  L  C  *  V  P  L  L  K  R  V  H  L  R  L  T  W  K  L  S  C  F  S  L  S  E  V  V  L  *  N  F  *  N  W  K  D  L  S  G  Y  L  G  K  M  M  G  L  M  R  I  L  *  V  G  L  L  Q  E  R  N  F  S  M  K  L  K  L  G  R  *  V  D  *  P  T  L  V  N  H  T  S  L  P  T  G  N  P  V  L  P  Q  N  L  K  R  W  I  T  P  S  S  W  *  C  Q  F  P  T  A  E  K  V  V  F  G  K  *  I  *  L  *  A  S  V  C  G  A  F  T  E  F  L  S  F  H  L  W  K  V  G  Q  S  C  G  A  N  I  P  M  F  S  T  V  F  R :   A  *  *  I  W  H  F  Q  S  P  I  L  R  R  A  I  V  F  V  F  K  F  R  L  A  A  S  K  R  Q  A  P  L  Q  F  L  M  E  T  C  R  H  K  Q  N  R  V  E  E  N  A  R  L  Q  Q  C  S  *  R  *  S  K  T  W  R  Q  Q  F  P  V  E  R  D  E  R  A  L  Q  Q  G  M  *  P  F  L  K  E  K  R  T  W  H  P  S  S  S  A  I  N  V  D  Y  P  I  S  R  *  E  T  R  R  W  L  E  S  P  D  R  A  K  *  R  C  L  P  H  H  P  L  S  S  C  N  A  L  F  S  V  H  S  K  *  L  V  R  S  P  L  L  D  L  F  L  V  S  V  N  Y  P  P  L  P  N  Y  T  S  L  A  P  H  V  Y  F  E  S  L  Q  L  I  H  P  H  P  L  Y  L  N  L  Y  T  *  D  K  M  L  *  R  G  Y  C  K  T  A  M  V  K  *  N  G  L  K  G  G  K  R  C  Y  Y  K  I   : Y  L  *  P  N  C  N  K  R  S  I  K  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81691" stop="81656"/>
                    <exon start="81564" stop="81454"/>
                    <exon start="81330" stop="81118"/>
                    <exon start="79755" stop="79570"/>
                    <exon start="79479" stop="76777"/>
                    <exon start="76316" stop="75918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3645</number_coding_nucleotides>
                  <number_encoded_amino_acids>1215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEVSMIALDLTMVLGTAHGLNVVFGVDLFSCVFLTATGAILFPLLASLFDNGSAKFLCIGWASSVLLSYVFGVVITLPETPFSIGGVLNKFSGESAFALMSLLGASIMPHNFYLHSSIVQQGKESTELSRGALCQDHFFAIVFIFSGIFLVNYAAMNSAANVSYSTGLLLLTFQDTLSLLDQVFRSSVAPFTIMLVTFISNQVTPLTWDLGRQAVVHDLFGMDIPGWLHHVTIRVISIVPALYCVWSSGAEGLYQLLILTQVVVALVLPSSVIPLFRVASSRSIMGIHKISQLMEFLSLGTFIGLLGLKIIFVIEMIFGNSDWVNNLKWNIGSSVSTPYVFLLIAASLCLCLMLWLAVTPLKSASSRFDAQAFLQTHVPEPYSECNQLGASNAMFGLVEGSSQKQEGAFHVEKSLVTHPDLSTKDPDQLLPESLLDFEKVHQLATIDESKSETTFSAPAVVHPEVPVSAGASPSVKSVCNEVSGVVSVDTSVFNTETVDVAEKTLRIEGDMANDRDDGDSWEEPEEAIKGVSENAQSFISDGPGSYKSLSGKLEDTGSGTGSLSRLAGLGRAARRQLTEALNEFWGQLFDYHGMATAEAKSKKLDIILGLDSKMNPKPAPASLKVESSAYIPSGSARIPEPLINSHVYSPKQQFASNIVDSAYRVPKEPSSTSSMWSNHMKLVGAYVQSSNSNMLDSGERRYSSMRIPATSAGYDQQPATVHGYQITAYLNQLAKERGSDYLNGQLESPSPRSVSSLTSNYAEPLARVSGQKPQSGVSSRAPPGFGNVPVGRNNSMQPTNTTSVDHSSTETAESVAGSANSKKYYSLPDISGRYVPRQDSIVSDARAQWYNSMGFGQSGGRSTYEQAYMSGSLRAGGPQRYEHSPKVCRDAFSLQYSSNSGTGSLWSRQPFEQFGVAGKPDVGSGDHGTVLSSSAQESTSTVDLEAKLLQSFRSCIVKLLKLEGSEWLFRQDDGADEDLIGRIAAREKFLYEAETREISRLTNIGESHFSSNRKPGSAPKPEEMDYTKFLVMSVPHCGEGCVWKVDLIISFGVWCIHRILELSLMESRPELWGKYTYVLNRLQGIVDLAFSKPHSPTSHCFCLQIPAGRQQKASPPPISNGNLPPQAKQGRGKCTTAAMLLEMIKDVETAISCRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGNQEVAGVAGPRKVTLSASSPPFVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78484" e_stop="76777"/>
            <exon e_start="76316" e_stop="75661"/>
            <exon e_start="75076" e_stop="75051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.829" e_score="0.966"/>
          <exon-intron don_prob="0.000" acc_prob="0.976" e_score="0.986"/>
          <exon-only e_score="0.654"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="78484" e_stop="76777" e_length="1708"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.829">
            <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="76316" e_stop="75661" e_length="656"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="75660" i_stop="75077" i_length="584"/>
          </intron>
          <exon e_serial="3" e_score="0.654">
            <gDNA_exon_boundary e_start="75076" e_stop="75051" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78484" stop="77727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78484" stop="78123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78428" stop="77720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78119" stop="77517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="77055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="77317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77578" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77576" stop="77222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77451" stop="76938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77309" stop="76777"/>
              <exon start="76316" stop="76046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="76777"/>
              <exon start="76316" stop="75995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77113" stop="76777"/>
              <exon start="76316" stop="75953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77109" stop="76777"/>
              <exon start="76316" stop="76281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77006" stop="76777"/>
              <exon start="76316" stop="75825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75825" stop="75661"/>
              <exon start="75076" stop="75051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG : GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACA : GAGTATAAAGATCAAAAAGGATGAAT</gDNA_template>
            <first_frame> Q  G  *  W  R  F  V  G  R  A  *  R  G  N  Q  R  S  I  *  E  R  S  I  F  Y  F  *  W  S  G  V  I  Q  K  S  K  W  K  T  R  G  H  G  E  W  Y  R  K  S  I  K  I  S  R  S  W  S  C  S  *  E  A  V  N  R  S  S  K  *  V  L  G  A  A  F  *  L  P  W  H  G  N  S  R  S  E  V  Q  E  T  G  Y  N  T  W  S  G  F  K  D  E  S  K  T  C  P  C  I  I  K  S  *  K  Q  C  V  Y  S  I  G  E  C  K  D  T  R  A  S  D  Q  L  A  C  V  L  S  Q  A  A  I  C  V  *  H  C  G  L  C  L  *  S  P  K  G  A  I  F  D  I  F  Y  V  V  *  P  Y  E  I  S  R  C  I  C  A  K  F  Q  Q  Q  H  A  *  L  R  G  E  A  L  F  *  Y  A  D  S  S  D  F  C  W  L  *  S  A  A  C  H  C  A  W  I  S  D  Y  C  L  P  *  S  T  C  E  R  K  R  I  *  L  F  K  W  A  T  G  V  T  I  S  S  F  C  I  I  T  D  V  K  L  C  R  T  I  G  S  C  F  G  A  K  T  S  E  W  S  Q  *  S  S  T  T  W  F  W  K  C  P  C  R  P  K  *  F  D  A  A  H  *  H  Y  F  C  R  P  *  L  Y  *  N  C  *  K  R  G  W  F  S  Q  L  *  E  V  L  Q  L  A  *  Y  L  R  A  L  C  S  S  P  R  F  Y  S  V  R  C  E  S  S  M  V  Q  F  H  G  I  R  T  I  W  W  S  I  Y  I  R  T  S  L  Y  E  W  F  T  K  G  R  W  S  S  E  V  *  T  F  S  *  S  L  Q  R  C  I  L  L  A  V  Q  L  Q  F  R  D  W  I  P  V  V  *  T  A  F  *  A  I  W  C  S  W  *  A  R  C  W  *  R  R  S  W  N  C  A  E  F  L  C  S  R  E  Y  I  Y  G  *  L  G  S  *  A  A  S  V  F  Q  K  L  Y  C  E  T  F  E  T  G  R  I  *  V  V  I  *  A  R  *  W  G  *  *  G  S  Y  R  S  D  C  C  K  R  E  I  S  L  *  S  *  N  *  G  D  K  *  I  D  Q  H  W  *  I  T  L  L  F  Q  Q  E  T  R  F  C  P  K  T  *  R  D  G  L  H  Q  V  L  G  D  V  S  S  P  L  R  R  R  L  C  L  E  S  R  S  D  Y  K  L  R  C  V  V  H  S  Q  N  S  *  A  F  T  Y  G  K  *  A  R  V  V  G  Q  I  Y  L  C  S  Q  P  S  S   : G  H  S  R  S  G  I  F  K  A  P  F  S  D  E  P  L  F  L  S  S  N  S  G  W  P  P  A  K  G  K  P  P  S  N  F  *  W  K  L  A  A  T  S  K  T  G  S  R  K  M  H  D  C  S  N  A  L  R  D  D  Q  R  R  G  D  S  N  F  L  S  K  G  T  N  G  H  C  S  R  G  C  S  L  S  *  R  K  R  E  P  G  I  R  P  Q  A  L  *  T  S  I  I  Q  *  A  G  R  K  P  G  G  G  W  S  R  R  T  A  Q  S  N  A  V  C  L  I  T  P  F  R  L  V  T  L  F  S  Q  F  I  A  N  D  W  *  D  H  H  C  *  T  C  S  *  F  L  *  I  I  P  P  S  P  T  I  P  P  L  H  L  M  C  I  L  N  L  C  S  L  F  T  P  I  P  C  T  S  I  C  I  H  R  I  K  C  C  N  E  V  T  V  K  L  Q  W  *  N  E  T  G  *  K  A  G  K  D  V  I  T  :  E  Y  K  D  Q  K  G  *   </first_frame>
            <second_frame>  R  D  D  G  D  S  W  E  E  P  E  E  A  I  K  G  V  S  E  N  A  Q  S  F  I  S  D  G  P  G  S  Y  K  S  L  S  G  K  L  E  D  T  G  S  G  T  G  S  L  S  R  L  A  G  L  G  R  A  A  R  R  Q  L  T  E  A  L  N  E  F  W  G  Q  L  F  D  Y  H  G  M  A  T  A  E  A  K  S  K  K  L  D  I  I  L  G  L  D  S  K  M  N  P  K  P  A  P  A  S  L  K  V  E  S  S  A  Y  I  P  S  G  S  A  R  I  P  E  P  L  I  N  S  H  V  Y  S  P  K  Q  Q  F  A  S  N  I  V  D  S  A  Y  R  V  P  K  E  P  S  S  T  S  S  M  W  S  N  H  M  K  L  V  G  A  Y  V  Q  S  S  N  S  N  M  L  D  S  G  E  R  R  Y  S  S  M  R  I  P  A  T  S  A  G  Y  D  Q  Q  P  A  T  V  H  G  Y  Q  I  T  A  Y  L  N  Q  L  A  K  E  R  G  S  D  Y  L  N  G  Q  L  E  S  P  S  P  R  S  V  S  S  L  T  S  N  Y  A  E  P  L  A  R  V  S  G  Q  K  P  Q  S  G  V  S  S  R  A  P  P  G  F  G  N  V  P  V  G  R  N  N  S  M  Q  P  T  N  T  T  S  V  D  H  S  S  T  E  T  A  E  S  V  A  G  S  A  N  S  K  K  Y  Y  S  L  P  D  I  S  G  R  Y  V  P  R  Q  D  S  I  V  S  D  A  R  A  Q  W  Y  N  S  M  G  F  G  Q  S  G  G  R  S  T  Y  E  Q  A  Y  M  S  G  S  L  R  A  G  G  P  Q  R  Y  E  H  S  P  K  V  C  R  D  A  F  S  L  Q  Y  S  S  N  S  G  T  G  S  L  W  S  R  Q  P  F  E  Q  F  G  V  A  G  K  P  D  V  G  S  G  D  H  G  T  V  L  S  S  S  A  Q  E  S  T  S  T  V  D  L  E  A  K  L  L  Q  S  F  R  S  C  I  V  K  L  L  K  L  E  G  S  E  W  L  F  R  Q  D  D  G  A  D  E  D  L  I  G  R  I  A  A  R  E  K  F  L  Y  E  A  E  T  R  E  I  S  R  L  T  N  I  G  E  S  H  F  S  S  N  R  K  P  G  S  A  P  K  P  E  E  M  D  Y  T  K  F  L  V  M  S  V  P  H  C  G  E  G  C  V  W  K  V  D  L  I  I  S  F  G  V  W  C  I  H  R  I  L  E  L  S  L  M  E  S  R  P  E  L  W  G  K  Y  T  Y  V  L  N  R  L  Q  :  G  I  V  D  L  A  F  S  K  P  H  S  P  T  S  H  C  F  C  L  Q  I  P  A  G  R  Q  Q  K  A  S  P  P  P  I  S  N  G  N  L  P  P  Q  A  K  Q  G  R  G  K  C  T  T  A  A  M  L  L  E  M  I  K  D  V  E  T  A  I  S  C  R  K  G  R  T  G  T  A  A  G  D  V  A  F  P  K  G  K  E  N  L  A  S  V  L  K  R  Y  K  R  R  L  S  N  K  P  V  G  N  Q  E  V  A  G  V  A  G  P  R  K  V  T  L  S  A  S  S  P  P  F  V  L  *  R  S  F  L  S  S  *  Q  M  T  G  E  I  T  I  V  R  L  V  L  S  F  C  E  L  S  P  P  P  Q  L  Y  L  P  C  T  S  C  V  F  *  I  F  A  A  Y  S  P  P  S  L  V  P  Q  S  V  Y  I  G  *  N  V  V  T  R  L  L  *  N  C  N  G  E  M  K  R  A  K  R  R  E  K  M  L  L  Q :   S  I  K  I  K  K  D  E  </second_frame>
            <third_frame>   G  M  M  E  I  R  G  K  S  L  K  R  Q  S  K  E  Y  L  R  T  L  N  L  L  F  L  M  V  R  G  H  T  K  V  *  V  E  N  *  R  T  R  G  V  V  Q  E  V  Y  Q  D  *  Q  V  L  V  V  Q  L  G  G  S  *  Q  K  L  *  M  S  F  G  G  S  F  L  I  T  M  A  W  Q  Q  Q  K  R  S  P  R  N  W  I  *  Y  L  V  W  I  Q  R  *  I  Q  N  L  P  L  H  H  *  K  L  K  A  V  R  I  F  H  R  G  V  Q  G  Y  Q  S  L  *  S  T  R  M  C  T  L  P  S  S  N  L  R  L  T  L  W  T  L  L  I  E  S  Q  R  S  H  L  R  H  L  L  C  G  L  T  I  *  N  *  *  V  H  M  C  K  V  P  T  A  T  C  L  T  Q  G  R  G  A  I  L  V  C  G  F  Q  R  L  L  L  A  M  I  S  S  L  P  L  C  M  D  I  R  L  L  L  T  L  I  N  L  R  K  K  E  D  L  I  I  *  M  G  N  W  S  H  H  L  L  V  L  Y  H  H  *  R  Q  T  M  Q  N  H  W  L  V  F  R  G  K  N  L  R  V  E  S  V  V  E  H  H  L  V  L  E  M  S  L  *  A  E  I  I  R  C  S  P  L  T  L  L  L  S  T  I  A  L  L  K  L  L  K  A  W  L  V  Q  P  T  L  R  S  T  T  A  C  L  I  S  Q  G  A  M  F  L  A  K  I  L  *  C  Q  M  R  E  L  N  G  T  I  P  W  D  S  D  N  L  V  V  D  L  H  T  N  K  P  I  *  V  V  H  *  G  Q  V  V  L  R  G  M  N  I  L  L  K  S  A  E  M  H  S  P  C  S  T  A  P  I  Q  G  L  D  P  C  G  L  D  S  L  L  S  N  L  V  *  L  V  S  Q  M  L  V  A  A  I  M  E  L  C  *  V  P  L  L  K  R  V  H  L  R  L  T  W  K  L  S  C  F  S  L  S  E  V  V  L  *  N  F  *  N  W  K  D  L  S  G  Y  L  G  K  M  M  G  L  M  R  I  L  *  V  G  L  L  Q  E  R  N  F  S  M  K  L  K  L  G  R  *  V  D  *  P  T  L  V  N  H  T  S  L  P  T  G  N  P  V  L  P  Q  N  L  K  R  W  I  T  P  S  S  W  *  C  Q  F  P  T  A  E  K  V  V  F  G  K  *  I  *  L  *  A  S  V  C  G  A  F  T  E  F  L  S  F  H  L  W  K  V  G  Q  S  C  G  A  N  I  P  M  F  S  T  V  F  R :   A  *  *  I  W  H  F  Q  S  P  I  L  R  R  A  I  V  F  V  F  K  F  R  L  A  A  S  K  R  Q  A  P  L  Q  F  L  M  E  T  C  R  H  K  Q  N  R  V  E  E  N  A  R  L  Q  Q  C  S  *  R  *  S  K  T  W  R  Q  Q  F  P  V  E  R  D  E  R  A  L  Q  Q  G  M  *  P  F  L  K  E  K  R  T  W  H  P  S  S  S  A  I  N  V  D  Y  P  I  S  R  *  E  T  R  R  W  L  E  S  P  D  R  A  K  *  R  C  L  P  H  H  P  L  S  S  C  N  A  L  F  S  V  H  S  K  *  L  V  R  S  P  L  L  D  L  F  L  V  S  V  N  Y  P  P  L  P  N  Y  T  S  L  A  P  H  V  Y  F  E  S  L  Q  L  I  H  P  H  P  L  Y  L  N  L  Y  T  *  D  K  M  L  *  R  G  Y  C  K  T  A  M  V  K  *  N  G  L  K  G  G  K  R  C  Y  Y   : R  V  *  R  S  K  R  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78483" stop="76777"/>
                    <exon start="76316" stop="75918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2103</number_coding_nucleotides>
                  <number_encoded_amino_acids>701</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDDGDSWEEPEEAIKGVSENAQSFISDGPGSYKSLSGKLEDTGSGTGSLSRLAGLGRAARRQLTEALNEFWGQLFDYHGMATAEAKSKKLDIILGLDSKMNPKPAPASLKVESSAYIPSGSARIPEPLINSHVYSPKQQFASNIVDSAYRVPKEPSSTSSMWSNHMKLVGAYVQSSNSNMLDSGERRYSSMRIPATSAGYDQQPATVHGYQITAYLNQLAKERGSDYLNGQLESPSPRSVSSLTSNYAEPLARVSGQKPQSGVSSRAPPGFGNVPVGRNNSMQPTNTTSVDHSSTETAESVAGSANSKKYYSLPDISGRYVPRQDSIVSDARAQWYNSMGFGQSGGRSTYEQAYMSGSLRAGGPQRYEHSPKVCRDAFSLQYSSNSGTGSLWSRQPFEQFGVAGKPDVGSGDHGTVLSSSAQESTSTVDLEAKLLQSFRSCIVKLLKLEGSEWLFRQDDGADEDLIGRIAAREKFLYEAETREISRLTNIGESHFSSNRKPGSAPKPEEMDYTKFLVMSVPHCGEGCVWKVDLIISFGVWCIHRILELSLMESRPELWGKYTYVLNRLQGIVDLAFSKPHSPTSHCFCLQIPAGRQQKASPPPISNGNLPPQAKQGRGKCTTAAMLLEMIKDVETAISCRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGNQEVAGVAGPRKVTLSASSPPFVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78484" e_stop="76777"/>
            <exon e_start="76316" e_stop="75652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.829" e_score="0.966"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="78484" e_stop="76777" e_length="1708"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.829">
            <gDNA_intron_boundary i_start="76776" i_stop="76317" i_length="460"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="76316" e_stop="75652" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78484" stop="77727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78484" stop="78123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78428" stop="77720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78119" stop="77517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="76997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="77055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77684" stop="77317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77578" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77576" stop="77222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77451" stop="76938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77309" stop="76777"/>
              <exon start="76316" stop="76046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="76777"/>
              <exon start="76316" stop="75995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77113" stop="76777"/>
              <exon start="76316" stop="75953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77109" stop="76777"/>
              <exon start="76316" stop="76281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77006" stop="76777"/>
              <exon start="76316" stop="75825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75987" stop="75652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGATGATGGAGATTCGTGGGAAGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACGCTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTCTAAGTGGAAAACTAGAGGACACGGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCAACAGCAGAAGCGAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAATCCAAAACCTGCCCCTGCATCATTAAAAGTTGAAAGCAGTGCGTATATTCCATCGGGGAGTGCAAGGATACCAGAGCCTCTGATCAACTCGCATGTGTACTCTCCCAAGCAGCAATTTGCGTCTAACATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCATCTTCGACATCTTCTATGTGGTCTAACCATATGAAATTAGTAGGTGCATATGTGCAAAGTTCCAACAGCAACATGCTTGACTCAGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGATCAGCAGCCTGCCACTGTGCATGGATATCAGATTACTGCTTACCTTAATCAACTTGCGAAAGAAAGAGGATCTGATTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTATCATCACTGACGTCAAACTATGCAGAACCATTGGCTCGTGTTTCGGGGCAAAAACCTCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGGCCGAAATAATTCGATGCAGCCCACTAACACTACTTCTGTCGACCATAGCTCTACTGAAACTGCTGAAAGCGTGGCTGGTTCAGCCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTATGTTCCTCGCCAAGATTCTATAGTGTCAGATGCGAGAGCTCAATGGTACAATTCCATGGGATTCGGACAATCTGGTGGTCGATCTACATACGAACAAGCCTATATGAGTGGTTCACTAAGGGCAGGTGGTCCTCAGAGGTATGAACATTCTCCTAAAGTCTGCAGAGATGCATTCTCCTTGCAGTACAGCTCCAATTCAGGGACTGGATCCCTGTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGGTAAGCCAGATGTTGGTAGCGGCGATCATGGAACTGTGCTGAGTTCCTCTGCTCAAGAGAGTACATCTACGGTTGACTTGGAAGCTAAGCTGCTTCAGTCTTTCAGAAGTTGTATTGTGAAACTTTTGAAACTGGAAGGATCTGAGTGGTTATTTAGGCAAGATGATGGGGCTGATGAGGATCTTATAGGTCGGATTGCTGCAAGAGAGAAATTTCTCTATGAAGCTGAAACTAGGGAGATAAGTAGATTGACCAACATTGGTGAATCACACTTCTCTTCCAACAGGAAACCCGGTTCTGCCCCAAAACCTGAAGAGATGGATTACACCAAGTTCTTGGTGATGTCAGTTCCCCACTGCGGAGAAGGTTGTGTTTGGAAAGTAGATCTGATTATAAGCTTCGGTGTGTGGTGCATTCACAGAATTCTTGAGCTTTCACTTATGGAAAGTAGGCCAGAGTTGTGGGGCAAATATACCTATGTTCTCAACCGTCTTCAG : GGCATAGTAGATCTGGCATTTTCAAAGCCCCATTCTCCGACGAGCCATTGTTTTTGTCTTCAAATTCCGGCTGGCCGCCAGCAAAAGGCAAGCCCCCCTCCAATTTCTAATGGAAACTTGCCGCCACAAGCAAAACAGGGTCGAGGAAAATGCACGACTGCAGCAATGCTCTTAGAGATGATCAAAGACGTGGAGACAGCAATTTCCTGTCGAAAGGGACGAACGGGCACTGCAGCAGGGGATGTAGCCTTTCCTAAAGGAAAAGAGAACCTGGCATCCGTCCTCAAGCGCTATAAACGTCGATTATCCAATAAGCCGGTAGGAAACCAGGAGGTGGCTGGAGTCGCCGGACCGCGCAAAGTAACGCTGTCTGCCTCATCACCCCCTTTCGTCTTGTAACGCTCTTTTCTCAGTTCATAGCAAATGACTGGTGAGATCACCATTGTTAGACTTGTTCTTAGTTTCTGTGAATTATCCCCCCCTCCCCAACTATACCTCCCTTGCACCTCATGTGTATTTTGAATCTTTGCAGCTTATTCACCCCCATCCCTTGTACCTCAATCTGTATACATAGGATAAAATGTTGTAACGAGGTTACTGTAAAACTGCAATGGTGAAATGAAACGGGCTAAAAGGCGGGAAAAGATGTTATTACAAGATATGCA</gDNA_template>
            <first_frame> Q  G  *  W  R  F  V  G  R  A  *  R  G  N  Q  R  S  I  *  E  R  S  I  F  Y  F  *  W  S  G  V  I  Q  K  S  K  W  K  T  R  G  H  G  E  W  Y  R  K  S  I  K  I  S  R  S  W  S  C  S  *  E  A  V  N  R  S  S  K  *  V  L  G  A  A  F  *  L  P  W  H  G  N  S  R  S  E  V  Q  E  T  G  Y  N  T  W  S  G  F  K  D  E  S  K  T  C  P  C  I  I  K  S  *  K  Q  C  V  Y  S  I  G  E  C  K  D  T  R  A  S  D  Q  L  A  C  V  L  S  Q  A  A  I  C  V  *  H  C  G  L  C  L  *  S  P  K  G  A  I  F  D  I  F  Y  V  V  *  P  Y  E  I  S  R  C  I  C  A  K  F  Q  Q  Q  H  A  *  L  R  G  E  A  L  F  *  Y  A  D  S  S  D  F  C  W  L  *  S  A  A  C  H  C  A  W  I  S  D  Y  C  L  P  *  S  T  C  E  R  K  R  I  *  L  F  K  W  A  T  G  V  T  I  S  S  F  C  I  I  T  D  V  K  L  C  R  T  I  G  S  C  F  G  A  K  T  S  E  W  S  Q  *  S  S  T  T  W  F  W  K  C  P  C  R  P  K  *  F  D  A  A  H  *  H  Y  F  C  R  P  *  L  Y  *  N  C  *  K  R  G  W  F  S  Q  L  *  E  V  L  Q  L  A  *  Y  L  R  A  L  C  S  S  P  R  F  Y  S  V  R  C  E  S  S  M  V  Q  F  H  G  I  R  T  I  W  W  S  I  Y  I  R  T  S  L  Y  E  W  F  T  K  G  R  W  S  S  E  V  *  T  F  S  *  S  L  Q  R  C  I  L  L  A  V  Q  L  Q  F  R  D  W  I  P  V  V  *  T  A  F  *  A  I  W  C  S  W  *  A  R  C  W  *  R  R  S  W  N  C  A  E  F  L  C  S  R  E  Y  I  Y  G  *  L  G  S  *  A  A  S  V  F  Q  K  L  Y  C  E  T  F  E  T  G  R  I  *  V  V  I  *  A  R  *  W  G  *  *  G  S  Y  R  S  D  C  C  K  R  E  I  S  L  *  S  *  N  *  G  D  K  *  I  D  Q  H  W  *  I  T  L  L  F  Q  Q  E  T  R  F  C  P  K  T  *  R  D  G  L  H  Q  V  L  G  D  V  S  S  P  L  R  R  R  L  C  L  E  S  R  S  D  Y  K  L  R  C  V  V  H  S  Q  N  S  *  A  F  T  Y  G  K  *  A  R  V  V  G  Q  I  Y  L  C  S  Q  P  S  S   : G  H  S  R  S  G  I  F  K  A  P  F  S  D  E  P  L  F  L  S  S  N  S  G  W  P  P  A  K  G  K  P  P  S  N  F  *  W  K  L  A  A  T  S  K  T  G  S  R  K  M  H  D  C  S  N  A  L  R  D  D  Q  R  R  G  D  S  N  F  L  S  K  G  T  N  G  H  C  S  R  G  C  S  L  S  *  R  K  R  E  P  G  I  R  P  Q  A  L  *  T  S  I  I  Q  *  A  G  R  K  P  G  G  G  W  S  R  R  T  A  Q  S  N  A  V  C  L  I  T  P  F  R  L  V  T  L  F  S  Q  F  I  A  N  D  W  *  D  H  H  C  *  T  C  S  *  F  L  *  I  I  P  P  S  P  T  I  P  P  L  H  L  M  C  I  L  N  L  C  S  L  F  T  P  I  P  C  T  S  I  C  I  H  R  I  K  C  C  N  E  V  T  V  K  L  Q  W  *  N  E  T  G  *  K  A  G  K  D  V  I  T  R  Y  A </first_frame>
            <second_frame>  R  D  D  G  D  S  W  E  E  P  E  E  A  I  K  G  V  S  E  N  A  Q  S  F  I  S  D  G  P  G  S  Y  K  S  L  S  G  K  L  E  D  T  G  S  G  T  G  S  L  S  R  L  A  G  L  G  R  A  A  R  R  Q  L  T  E  A  L  N  E  F  W  G  Q  L  F  D  Y  H  G  M  A  T  A  E  A  K  S  K  K  L  D  I  I  L  G  L  D  S  K  M  N  P  K  P  A  P  A  S  L  K  V  E  S  S  A  Y  I  P  S  G  S  A  R  I  P  E  P  L  I  N  S  H  V  Y  S  P  K  Q  Q  F  A  S  N  I  V  D  S  A  Y  R  V  P  K  E  P  S  S  T  S  S  M  W  S  N  H  M  K  L  V  G  A  Y  V  Q  S  S  N  S  N  M  L  D  S  G  E  R  R  Y  S  S  M  R  I  P  A  T  S  A  G  Y  D  Q  Q  P  A  T  V  H  G  Y  Q  I  T  A  Y  L  N  Q  L  A  K  E  R  G  S  D  Y  L  N  G  Q  L  E  S  P  S  P  R  S  V  S  S  L  T  S  N  Y  A  E  P  L  A  R  V  S  G  Q  K  P  Q  S  G  V  S  S  R  A  P  P  G  F  G  N  V  P  V  G  R  N  N  S  M  Q  P  T  N  T  T  S  V  D  H  S  S  T  E  T  A  E  S  V  A  G  S  A  N  S  K  K  Y  Y  S  L  P  D  I  S  G  R  Y  V  P  R  Q  D  S  I  V  S  D  A  R  A  Q  W  Y  N  S  M  G  F  G  Q  S  G  G  R  S  T  Y  E  Q  A  Y  M  S  G  S  L  R  A  G  G  P  Q  R  Y  E  H  S  P  K  V  C  R  D  A  F  S  L  Q  Y  S  S  N  S  G  T  G  S  L  W  S  R  Q  P  F  E  Q  F  G  V  A  G  K  P  D  V  G  S  G  D  H  G  T  V  L  S  S  S  A  Q  E  S  T  S  T  V  D  L  E  A  K  L  L  Q  S  F  R  S  C  I  V  K  L  L  K  L  E  G  S  E  W  L  F  R  Q  D  D  G  A  D  E  D  L  I  G  R  I  A  A  R  E  K  F  L  Y  E  A  E  T  R  E  I  S  R  L  T  N  I  G  E  S  H  F  S  S  N  R  K  P  G  S  A  P  K  P  E  E  M  D  Y  T  K  F  L  V  M  S  V  P  H  C  G  E  G  C  V  W  K  V  D  L  I  I  S  F  G  V  W  C  I  H  R  I  L  E  L  S  L  M  E  S  R  P  E  L  W  G  K  Y  T  Y  V  L  N  R  L  Q  :  G  I  V  D  L  A  F  S  K  P  H  S  P  T  S  H  C  F  C  L  Q  I  P  A  G  R  Q  Q  K  A  S  P  P  P  I  S  N  G  N  L  P  P  Q  A  K  Q  G  R  G  K  C  T  T  A  A  M  L  L  E  M  I  K  D  V  E  T  A  I  S  C  R  K  G  R  T  G  T  A  A  G  D  V  A  F  P  K  G  K  E  N  L  A  S  V  L  K  R  Y  K  R  R  L  S  N  K  P  V  G  N  Q  E  V  A  G  V  A  G  P  R  K  V  T  L  S  A  S  S  P  P  F  V  L  *  R  S  F  L  S  S  *  Q  M  T  G  E  I  T  I  V  R  L  V  L  S  F  C  E  L  S  P  P  P  Q  L  Y  L  P  C  T  S  C  V  F  *  I  F  A  A  Y  S  P  P  S  L  V  P  Q  S  V  Y  I  G  *  N  V  V  T  R  L  L  *  N  C  N  G  E  M  K  R  A  K  R  R  E  K  M  L  L  Q  D  M   </second_frame>
            <third_frame>   G  M  M  E  I  R  G  K  S  L  K  R  Q  S  K  E  Y  L  R  T  L  N  L  L  F  L  M  V  R  G  H  T  K  V  *  V  E  N  *  R  T  R  G  V  V  Q  E  V  Y  Q  D  *  Q  V  L  V  V  Q  L  G  G  S  *  Q  K  L  *  M  S  F  G  G  S  F  L  I  T  M  A  W  Q  Q  Q  K  R  S  P  R  N  W  I  *  Y  L  V  W  I  Q  R  *  I  Q  N  L  P  L  H  H  *  K  L  K  A  V  R  I  F  H  R  G  V  Q  G  Y  Q  S  L  *  S  T  R  M  C  T  L  P  S  S  N  L  R  L  T  L  W  T  L  L  I  E  S  Q  R  S  H  L  R  H  L  L  C  G  L  T  I  *  N  *  *  V  H  M  C  K  V  P  T  A  T  C  L  T  Q  G  R  G  A  I  L  V  C  G  F  Q  R  L  L  L  A  M  I  S  S  L  P  L  C  M  D  I  R  L  L  L  T  L  I  N  L  R  K  K  E  D  L  I  I  *  M  G  N  W  S  H  H  L  L  V  L  Y  H  H  *  R  Q  T  M  Q  N  H  W  L  V  F  R  G  K  N  L  R  V  E  S  V  V  E  H  H  L  V  L  E  M  S  L  *  A  E  I  I  R  C  S  P  L  T  L  L  L  S  T  I  A  L  L  K  L  L  K  A  W  L  V  Q  P  T  L  R  S  T  T  A  C  L  I  S  Q  G  A  M  F  L  A  K  I  L  *  C  Q  M  R  E  L  N  G  T  I  P  W  D  S  D  N  L  V  V  D  L  H  T  N  K  P  I  *  V  V  H  *  G  Q  V  V  L  R  G  M  N  I  L  L  K  S  A  E  M  H  S  P  C  S  T  A  P  I  Q  G  L  D  P  C  G  L  D  S  L  L  S  N  L  V  *  L  V  S  Q  M  L  V  A  A  I  M  E  L  C  *  V  P  L  L  K  R  V  H  L  R  L  T  W  K  L  S  C  F  S  L  S  E  V  V  L  *  N  F  *  N  W  K  D  L  S  G  Y  L  G  K  M  M  G  L  M  R  I  L  *  V  G  L  L  Q  E  R  N  F  S  M  K  L  K  L  G  R  *  V  D  *  P  T  L  V  N  H  T  S  L  P  T  G  N  P  V  L  P  Q  N  L  K  R  W  I  T  P  S  S  W  *  C  Q  F  P  T  A  E  K  V  V  F  G  K  *  I  *  L  *  A  S  V  C  G  A  F  T  E  F  L  S  F  H  L  W  K  V  G  Q  S  C  G  A  N  I  P  M  F  S  T  V  F  R :   A  *  *  I  W  H  F  Q  S  P  I  L  R  R  A  I  V  F  V  F  K  F  R  L  A  A  S  K  R  Q  A  P  L  Q  F  L  M  E  T  C  R  H  K  Q  N  R  V  E  E  N  A  R  L  Q  Q  C  S  *  R  *  S  K  T  W  R  Q  Q  F  P  V  E  R  D  E  R  A  L  Q  Q  G  M  *  P  F  L  K  E  K  R  T  W  H  P  S  S  S  A  I  N  V  D  Y  P  I  S  R  *  E  T  R  R  W  L  E  S  P  D  R  A  K  *  R  C  L  P  H  H  P  L  S  S  C  N  A  L  F  S  V  H  S  K  *  L  V  R  S  P  L  L  D  L  F  L  V  S  V  N  Y  P  P  L  P  N  Y  T  S  L  A  P  H  V  Y  F  E  S  L  Q  L  I  H  P  H  P  L  Y  L  N  L  Y  T  *  D  K  M  L  *  R  G  Y  C  K  T  A  M  V  K  *  N  G  L  K  G  G  K  R  C  Y  Y  K  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0130H12.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78483" stop="76777"/>
                    <exon start="76316" stop="75918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2103</number_coding_nucleotides>
                  <number_encoded_amino_acids>701</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDDGDSWEEPEEAIKGVSENAQSFISDGPGSYKSLSGKLEDTGSGTGSLSRLAGLGRAARRQLTEALNEFWGQLFDYHGMATAEAKSKKLDIILGLDSKMNPKPAPASLKVESSAYIPSGSARIPEPLINSHVYSPKQQFASNIVDSAYRVPKEPSSTSSMWSNHMKLVGAYVQSSNSNMLDSGERRYSSMRIPATSAGYDQQPATVHGYQITAYLNQLAKERGSDYLNGQLESPSPRSVSSLTSNYAEPLARVSGQKPQSGVSSRAPPGFGNVPVGRNNSMQPTNTTSVDHSSTETAESVAGSANSKKYYSLPDISGRYVPRQDSIVSDARAQWYNSMGFGQSGGRSTYEQAYMSGSLRAGGPQRYEHSPKVCRDAFSLQYSSNSGTGSLWSRQPFEQFGVAGKPDVGSGDHGTVLSSSAQESTSTVDLEAKLLQSFRSCIVKLLKLEGSEWLFRQDDGADEDLIGRIAAREKFLYEAETREISRLTNIGESHFSSNRKPGSAPKPEEMDYTKFLVMSVPHCGEGCVWKVDLIISFGVWCIHRILELSLMESRPELWGKYTYVLNRLQGIVDLAFSKPHSPTSHCFCLQIPAGRQQKASPPPISNGNLPPQAKQGRGKCTTAAMLLEMIKDVETAISCRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGNQEVAGVAGPRKVTLSASSPPFVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 767 chains have been computed
$ 
$ memory statistics:
$ 2067304 bytes spliced alignments in total
$ 525 spliced alignments have been stored
$ 3937 bytes was the average size of a spliced alignment
$ 41736 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 2981 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 863 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:48:22
-->
