<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:24:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330632" ref_strand="+" ref_description="SGN-U330632        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttcattgctatgtacatttatgagccaataattcttggtagagaaacaagtattgacatatggattatggagaaaaatggctattggactaaaaatatgagaattggcccttttttaaatatcaaaagatcaattggatatggaaaaaatggggaaatttttcttgaagttgttacatatcaattggacatatttgatccttttttaaagaacaataaggttcttagccaacaaaaaaatggctactctttgcaagcttttgcttacaatgaaagcttagtttcattgaaaaatatttcattcttgtaatttagttgggtaatgatataaatgaaaatgatggctataatttaaattctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="8499" stop="9458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8799" g_stop="9158" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="371"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-U330632" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8799" e_stop="9158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</genome_strand>
        <mrna_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGGTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329334" ref_strand="+" ref_description="SGN-U329334        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr2:15215706-15217918 REVERSE | Aliases: F2H17.10, F2H17_10(evalue: 4e-40, score=161) genbank/nr: gi|18404095|ref|NP_565841.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|25408458|pir||H84778 hypothetical protein At2g36290 [imported] - Arabidopsis thaliana gi|4510348|gb|AAD21437.1| expressed protein [Arabidopsis thaliana](evalue: 3e-38, score=161)">
      <seq>gcaatgagcaactttgcacctagtcatgttctcacgcttgcttctcgttgtgtagaccgtgctttcaagggaagcaattgtttgactaggcttaatgcctttgtccgataagtttgtatcgaaaacagataacttaattggtgtttcgtttcctaaagttttggattttcttgtgctgtttgagctcactgtttctattactcaactctcctttcaggcacaggtaagacaacaaggagaatatgaatccctccaccgcgacttaatgattggattcggaacatgggaattcgatccaatggatcttgagaacccgttccctaacaatgaaggttccgttcacttatggcaaggcgatgaggataggctctcgcccgtcacactacaaaggtacatttcacagcaattaccatggatccaatatcatgaaattccaggtgctggtcatttgattccaatgattgatggaattggagagaaaatcttcaagactcttttaactgcgtaaactcaccatttttatagctacgcgcaaggtttcatcttgcacgtcgtgatgtgttttaagttgtctacatatctctggtttttgtcgatcgttaagtttcatattttgatgtcaaagagttttgactttgagagaaatattttgtattacaaattcttttgtttgtaattaaggatagtgatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="17926" stop="16639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17637" g_stop="16935" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-U329334" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17637" e_stop="16935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTT</genome_strand>
        <mrna_strand>GCAATGAGCAACTTTGCACCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322049" ref_strand="+" ref_description="SGN-U322049        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low simiilarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311, SP:Q59695:ACOC_PSEPU Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component) {Pseudomonas putida}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr3:17936687-17939173 REVERSE | Aliases: T29H11.70(evalue: 4e-96, score=348) genbank/nr: gi|15228377|ref|NP_190412.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|7487537|pir||T06701 hypothetical protein T29H11.70 - Arabidopsis thaliana gi|4678347|emb|CAB41157.1| putative protein [Arabidopsis thaliana] gi|17529096|gb|AAL38758.1| unknown protein [Arabidopsis thaliana](evalue: 3e-94, score=348)">
      <seq>aaaagatttcgaacaattattaaatcagtgagatgagactcagatctcttcaaccttcatttttgtataatttttgtaaatctacagtgtgaatacaaaatttgtaatttcaaaatcaagaacttgattcagcaaaaaaaaaaaaaaaatggcaaccaagaagatttcagcagcttcagctagggctcatactcgtaaagctaagcaaaaaagttctattccttttccttctggggcatttgcgaaaattcttctggttgttttgattgggttattagcgtggggttatcaagcaacacgaccacctccccctaagacctgtggatccccagatggccctcccgtcactgcacctagaatcaaacttagtgatggaagacacttggcttacaaggagactggtgtacttagagataatgcaaaatataagattgtatatatccatgggtacgatggttgtaggcatgatgttccaattaacatcctctctcaagatgtcatcgaaagtttaggagtgtacattgtttcctttgacagacctggttatggagaaagtgatcctaatccaaaacgaacagtcaagagcttagcttttgacatacaggagcttgctgatcaattaggtctaggatcgaaattctatgttatgggattttcaatggggggacaggctgtttggacctgtctcagatacattcctcacaggttggcaggtgctgctcttattgcaccagttgtcaactattggtggcctaggtttcctgctaatatgtcccaagaagcattcaaccttcgacttcctcaagacaaatggactcttcgtgttgctcattaccttccgtggctcacctattggtggaacactcagaagttctttccttcatgcagtgctgcaggtcgcaaccctgcaattttctcttcgaaggacctagagctagtttccaagcaaagttcgagccaagactatcgtgcacaggtaagacaacaaagagaatatgaatccctccaccgcgacttaatgattggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="22795" stop="17062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22495" g_stop="22263" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22262" i_stop="20782" i_length="1481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20781" g_stop="20522" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="493" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20440" g_stop="20229" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="705" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19536" g_stop="19272" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="970" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19271" i_stop="17421" i_length="1851">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17420" g_stop="17362" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1029" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-U322049" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22495" e_stop="22263"/>
          <exon e_start="20781" e_stop="20522"/>
          <exon e_start="20440" e_stop="20229"/>
          <exon e_start="19536" e_stop="19272"/>
          <exon e_start="17420" e_stop="17362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAATGGCAACCAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAAAGTTCTATTCCTTTTCCTTCTGGTGAGTTTTCTTTTTTTATTTTTGGTATAAATTTCCAGTTTTATTTTATCATATGTTGAAAATATAGTGAAAAAACTGAATTTAGTATGTAAAGTTAGTTAGTTTCTTTAACTAGAGGTCTCAGGTTCGAGCTGAGGTAGGAGTTGCCTTTGTTAGAGGATAATTTACACTAAGGAGGGATTTTACCAATGTGAATCTGGATTTAATCGGGTTTCAATACAGGTATCGGACAGTTGATTGGGAAACCAAAAACAAAAATATTAATATTTGGTGGAAAGTTTTGATTTTGATATTTTCTCACATTTGATGTGTTTGTTGGGGCATATGGAAAATATAGTGAATTGAATCTTTATTATATAAAGTTGATAACTTTCTTAATTAGAGGTCTCGGGTTCAAATTAGGTAAAGAGTTTCCTTTGTTTGGGAGTATTTTATCCCTAAGGTGGGATTTCCAATGCAAAATTTGGATTTAGTCGGGTTTCAATGCGGGTACCGGACACCGAGTTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTGCATTTGGTGGGGAGTTTTTGATATTGATTGTGATTTTGAAAGTTTTTCTCACACTTCAATGAGTTTGTTGGAGCATGTAGTGAATTTAGTGAAGAACTGAATCTTTATTTTGTAAAGTTGATAACTTTCTTAACTAGTGGTGTTTGGTTCAAGCCTGGCTAGGAGTCTCCCTTTGTTAGGGAGCTTTTATCCCCAATGTGGGACTTTCCAGGATGAATCTAGAATTAGTCGCTCCCAATGTAGGTATTGGACGGACATTCGGTTAATCAAAAACAAAACTTGGTTATGCTTTTGGTACTCTTTTCTCACATCAGAATGAGTTTGTTGAGGCATGTAGAAAGTATAGTGATGAACTGAATCTTTGTTCTGTAAAGTTAATAACTTTTCTAACCAAAGGTGTCGGGTTTGATATGAGGTAGGGAGCCTCTATTGTAACGGATCATTTTATCCTCCAATGTGGGACTTTCCGACACGAATATGGATTTAGTCAGGTCCCAATGTGGGTACTAGACACTGGGTTGGGACACCAAAAACAGACTTTGTTACATTTGGTGGAAAGTTTTTTGCTTTTTTTCTTACATTTGAATGCCCGTGTTAGTATCATTTTAGTTAGAAACTGCAAATATAAATTATAATGGTTGTTTACTTAGAACCAAATATTTTGAGTTTGCAAATGCTTCTATTCAAAATTCAAAGAAAATTCTTGTATTATTAGATGCTCTTCATAAATCTTGAAACTGGATATATTCCGTATGTTCTCAAAACCGAAGATTTTAGTTTAACTTAATTTAAGTTGCTTGATTGTGCAAATGTTTCTCTAAACATTGTCCTTTTTTTTAAAAAGTTTTTTTAAGATGCTTGAATACTATTTCTCGTCTTTTTGTCTTTCCAAATTGTTTAAATTCTCAATTATCTTGTAACTCAAATGATATCATTTCAGGGGCATTTGCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAAGTAACGTCACTTGGTTCTCTTGTTCGTATTCTTTTATGGACCAACTATGTATTTTGGACATAATTTTTGTTTTTCTTGCAGGATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAGGTAATCTCATTTTTATTACATGTACATTAGTAGAGCGTTATACCTCATATACAATGGCTGAACCAAGTTTTCTTTACTAAAGGCCCTTACAATATAAAAAAGTAAACACACGAAGAAGCCAGTGACATCTATTATTTATACACAAAAGAATAGAGTTAATGGTGAAAGAACATACCTAAATTATCACGTTTTCGCGAGTTTCATACCTCAATTACCACTCAATTATATCAAAACATACCTCGATGTTTTGCCTACATGTGCTTGTTGTTGATTGAGAAGGAATATTTGGCCAACACAACATCGAAGTGTGTCTTAATACTAAGGGAATGACAATTTAGATAGGTAAAGAGAACAATGGGTAGTTGAGGTATGAAACTCGCGAAAAAGTCATTGTTTGGATGTGTTTTTGACCATTAACTCTAAAAAATTAACCTTGACCTTGAAAATACAGTATAACTTTCCGCGAAGGGCCCTAGCTCTGCCATGTTCGTATGGAATTTGTGTAGGTTCAGTAATTTGTGGAAGAAAAGCTTGAAATTTTTTCTGGAAAAGCAGACTCTATAGAGGAATCTCAATTCCTATTTTCAGGAGCACAAACATAAGAATTTTTGTTATATGATTGTTTATTTGTTTTATTAAGTTATTTGAAATGAATATCAAGATTCAAGAATAACGTTCGTTACTTGAAATAGGTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGTGTAAGAGCTCTTTCCTTTAATATCAATTTGTTAAATGAAGATGTTAGGAGGATGGTATTACAGCTACATTTATAAATTTGGGTTGGAAATTATTCGAGTTGTGCTTGAGCCTGGCTGCATATTACATGAGCTTGGAAACCACCTCAAACTTCGCTACGGAAAAATATTTACCCATCTCAAGTTTTAGCTTAGTGTAGATATGATAATGTCTAGTTTCTCCTATTTTCTTCAATCCAGAATCAAGTTCTGGAATCAACCGTTAATAGACCAACATAACTTTCTACTATCAACCGTAGAGTCAGGGTGGGTGGGGTGGGTGTAACTGAGGGAGACTGAGAGAGACAAACAAAAGGCTAACAAATTGATGATTGGCATTCTTGTAAGTGTGTTATAAGAGTTCGCCTATGCTTTGGAGTATATCGTGCGGTCTATTGAATCACTTGGAAATGCTAATTTTATATTTTTAGACCTACAATAAGAACCTCCTGTTTGGGATTAGTGCAATCGAAGCTTACAAGAGTAAATATGACAAATTCATGCTCAACAAAATGTAGCAAGTTTGTGCTTATAGAAGCTGAATCAAGATCTGTTCACGCACAAGTTGGCTAATCTACAACCCTTAGGTATGTGAGAAATACATGTTACCAATTTTTTTTTAAAAAGGAATATGTATTTGTATCCGAGTATCAAAAGTCATTGATATGTAAAAATACATTGGGGTCAATCATAGTACTTCCAATGATAAGGATTGATCGGCATTCAACAAATAGACATAGCAAGGGATAATGGTTAAAGTTTCTTTTCTTTTTCTTGATAATGCTGCTCGGATAATATTGTGCACTTCGACTAATCTATGGATGCTTGTTATCTTCTACCAATGCATTATACATGTATTTATTAACCGTCTTAAACTAAAGATATATAAAATTTACAAAAATATCCTTTAATCGTGTAGTCTTAGACAAGCCACGTAGTAAGTTGGAATTAAAAGATTGCAAAAAAAGGTAATAAACCTTTTTTTAAAAAAATGGACTAAAAGGGAAAGTGAAACAAACAAATTGAAACGGAGCGAGTAATGTGTTTCTGGCTAAAGATGTCCGGTGGGGTTCTTGAGAGGACCCACATTTGTTGAGACCTCGAAGTGTTACTATTAAGTTACGAGGCCTTTAACAAAAATGGGGCCTAATAAGCTTGTTGTTTATGGAGAAGAAGAAGCATGGGAGACTAGGCTTCAAAACCTATCAGTGCTAACAAAAAAGAAAATCAAAGCCTTAGTTGTCAGGTTACCACTACTTCGTGTTGAACTTGATAGGAGGTATCCAGTGCCAAATGAAATAGTCAAGGTGCATGCAAGTTCGCCTAAATACCAGTTTTACGGAGAAAACTTTTGTTGTGTATGTTGATGTGGTGTATAGGACAATGGGTCTTAGGATGACTCTTTGCGTACCAAGAGAGTCATGCAGAGGAATGATATTGACACTTCATTCCGAGAGAAACGCCCTTTTGCGTATAACATAGCTTTTAAGCATCAACATTTTGAAGCCTTCATTTGTAGAGGCAGATATCAGTGAGCTTATGCCGCTTTTGTAAATAGTAAGATTAAACTCCACAGGCTAAGAAATTTTGATCGATGTGCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATT</genome_strand>
        <mrna_strand>AAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAATGGCAACCAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAAAGTTCTATTCCTTTTCCTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATTTGCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA.................................................................................GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGTAAGACAACAAAGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315342" ref_strand="+" ref_description="SGN-U315342        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr2:15215706-15217918 REVERSE | Aliases: F2H17.10, F2H17_10(evalue: 1e-53, score=206) genbank/nr: gi|18404095|ref|NP_565841.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|25408458|pir||H84778 hypothetical protein At2g36290 [imported] - Arabidopsis thaliana gi|4510348|gb|AAD21437.1| expressed protein [Arabidopsis thaliana](evalue: 7e-52, score=206)">
      <seq>aaacaagcgtactacgaacagcttgtgcaggatcaatggacgcttcgcatcgcacactattttccatggctgacttactggtggaacactcaaaaattatttccttcttccagcgttgcaacgggcagcgaggatattcttttagaacaagacagagttcttatgcctatctttgattcatatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacctaatgataggtttcgggacatgggaatttgatccgatggaactagaaaacccattccataacggggaagggtccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctaaaaaggggctattggttttagtattggattcaacgatcattttttgtcattgaacaaatttgaatattttgttgataattatatcccacgtaagtcgttgggactcttcaaaaatattgttatatacttgcatgtaagtcggatcttccaaatactttacatttttgaagagttcgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="24292" stop="22047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23992" g_stop="23795" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23451" g_stop="22958" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="692" r_length="494" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22957" i_stop="22364" i_length="594">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.436" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22363" g_stop="22347" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="709" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-U315342" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23992" e_stop="23795"/>
          <exon e_start="23451" e_stop="22958"/>
          <exon e_start="22363" e_stop="22347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGCACTCGTCTGTCTTCTTCACATATCCACATTTCATTTTGCAAATTTGGATAAACACCATGCTTCAACATCAATCCTTATATACGTAAATGAAAAAATAAGGACAAATAGTGTTACAAGTACGTTTTCTGCATCATTATCGACTGTAGGATAGAGTCATAACTTGTTATAACTAGTTAAATTACGCTAATAGAATTGTGTATAACTTAATTCCACAATCATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAACTCTCCTAAATCTTGTGCTTGCATTATGAATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTCTTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAACATTGTTTTTTTGATATCAATAACATTGTGTAATATTGGATTCTATGACTCTTGTCATTGAACAAACTAGTTAATATTTAATAAGGACTTTGAAAGTATACGCGGTGTCAAGATTTTCAGTAAGCGTTTTAAAATTTGGAAAAAATAAATACACGAAGTAATCGAATGGGGTTCGACATCTATTATATAAATCTAAATCATGTATAAATAATATAATTTTTCGCTGAAAGAGGTTCAAACCTCCTAGCAATAAGCTAGCTCCGCCCCGGGTCTGAAGTAGTCGCTAATAGATATCTTATGAAATTAGTTGAGAAATACACAAATACGGTTAATATTTGAAAAATATTACTATATATTAAAAAGAAATTATTTATTGTTTTGAGAGTCATTTTTTTTAAAATAAAATATAAGGGTAAAAAATAAAGGAAGAAAGAAAATTGCCAAATGATAGATCATATGCTAAAAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG.......................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335100" ref_strand="-" ref_description="SGN-U335100        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr2:15215706-15217918 REVERSE | Aliases: F2H17.10, F2H17_10(evalue: 1e-29, score=126) genbank/nr: gi|18404095|ref|NP_565841.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|25408458|pir||H84778 hypothetical protein At2g36290 [imported] - Arabidopsis thaliana gi|4510348|gb|AAD21437.1| expressed protein [Arabidopsis thaliana](evalue: 1e-27, score=126)">
      <seq>gtaagacagcaaggggagtacgagttcttccctcgccgacataatgatagggttcgggacatgggagtaaaataagatggaactagaaaatccattccctaacggggaagggtccgttcacatttggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaataggtagttaataattaaattctacttaagttgattttagatagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="23745" stop="22047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23445" g_stop="23051" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-U335100" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335100" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23445" e_stop="23051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGACAGCAAGGGGAGTACGAGTCCATCCATCG-CGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCAC</genome_strand>
        <mrna_strand>GTAAGACAGCAAGGGGAGTACGAGTTCTTCCCTCGCCGACATAATGATAGGGTTCGGGACATGGGAGTAAAATAAGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATTTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAA-GGGC------TTTTAGTATTGGATTCAATGATCA-TTTTTGTCATTGAACAAATTTGAATAGGTAGTTAATAATTAAATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335101" ref_strand="+" ref_description="SGN-U335101        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to SP:P22862:ESTE_PSEFL Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase) {Pseudomonas fluorescens}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr3:20091904-20093123 FORWARD | Aliases: F24B22.200(evalue: 1e-68, score=191) genbank/nr: gi|15232465|ref|NP_190992.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana](evalue: 1e-66, score=191)">
      <seq>ctcatactcgtaaagctaagcaaaagacttctttccctcttgcttttggaatgatgagaaatatgatagccctttttggaatagtgatattggcactgatttatagggcaattatgcctccaccaccgaagatttgtggttcatcaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgtatgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="27707" stop="24086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27407" g_stop="27360" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25499" g_stop="25233" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="315" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25232" i_stop="24600" i_length="633">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24599" g_stop="24388" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="527" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-U335101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27407" e_stop="27360"/>
          <exon e_start="25499" e_stop="25233"/>
          <exon e_start="24599" e_stop="24388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTGGTGGGTTTTTCATATTTTTTCAATTTTATTTTATCATATGTTGAAAATATTGTGAAGAATTGAATTTTTATTATGTAAAGTTGATAACTTTGTTTAATTAGAAGTCTCGGGTTTGAGCTGAGGTTCAGATATGTCTTTGTTATAGCTCTGATGTGGGATTTCTTGGCGCGAATATGGGTTTAGTTGGGTTGGATTCTAATACGGGTATCGGACACTTGGTTGAGACCAAAAGCAAAAGTTGATAACTTTGTTTAATTAGAGATGTCGGGTTTGAGCTAAGGTAGAGAGTTGTCTTGGTTAGGGAGTGTATTAGCTCTAATGTGGGATTTCTTGGCACGAATGTGGGTTTAGTTGGGTTGGGTCCTAATTCGGATTTCGGACACTTGGTTGAGAAACCAAAAATAAAAGTTGATTACTTTTTTAAGTAGACGTCTCGGATTTGAGCTGAGATAGGAAGTTTCCTTTTGTTAGGGAGTATGTTAGCTCTAATGTGGGATTTCTTGGCCCGAATATGGGTTTAGTTGGGTTGGGTCCTAATTCGGGTTTCAAATACTTGGTTGAGAAACCAAAAACAAAAGTTGATTACTTTCTTAGCTAGACGTATCAGATTTGAGCTGAGGTAGGAAGTTGCCTTTGTTAGGAAATATCTTAGCTCTAATGTGGGATTTCTTGGCGTGAATATGGATTTAGTTGGGTTGAGTCCTAATTCGGGTTTCAGTCACTTGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTTTTAACTAGAGGTCTTGGGTTTGAGCTGGAGTAAGGAGTTGCCATTGTTAAATAGTATTTTTTCACTCAATGTAGGACTTTCTTGATTTAGGTGGGTTGGGTCTCAATGCAGGCACCGGACACTAGGTTGAGAAATAGAAGTTGATAACTTTCTTAACTAGAGGTGTCGGGCTTGAGCCAGAGTAAGGAGTTGTCATTGTTAAAGATTATTTTTTTCACTCGATGTAGGAATTTCTGCATTTAGGTGGGTTGGATCTCAATGCAGGTACCGTACACCGGGTTGAGAAACCAAAAACAAAAGTTGATAACTTTGTTAGATTTGGTGGGAAGTTTTTATTTTGCTTATGATTTTGATAGTTTTTCTCACATTTGGATGAGTTTGTTATGTGAATTGATAACTTTCTTAACCAAATGTGTCGGGTTCGAGCCGGGGTAACGAGTCGTCCTTGTTAGAGGGAGCATTTTATCCCCCAATGTAAGACTTCTTCCCAGCACAAATCCGGATTTAGTCAAGTCAGATGATACTGGTTTGGGAAACCAAAAACAGAAGTTGATAACTTTGTTGCATTTGGTGGGAAGTTTTGATTTTTGATTAGGGCAGCCGTTGTTTAGAGAGCATTTTATCCCCAATGTAGAATTTTCCAGTGCAAATTTGCATTTTGTTGGGTATCAATGCGGAAATTTAGGTAGAAAAACACGCCTGGAGCATTACGTTTAATATCTTTAAAGCTCATTGAACTAATGGGACTTATAGAAAAGAAAACATGCATATCAAGAATAGTAAAGCAACACAAAGTTATTGTGTTGGTGTAAAAATTCAAAATAGAAGTTTCAATACTATAAATATTCAGCAAACAAAATTTACTAGTTCTTTGCTCAGTTTTCCCTTTTTATTAAATAGCAGTTGAACAAGCTTATGCTATACAAATACATAAATTATTTTATATGACATAAGTTTATTAAATTTTTTGTTTATTTGCGGGTGCATGTTTACTTGGCATATTTGTTTTTATTTTTGATGTTTCCTAAGGGAAGGTTCTTGTTCATCAAAAAACGTTTCTTGATTTCTGTTCTTGTTTTCTTGAAATCTTTCCATTTTCAGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTATGTATGTTTCATCTTTACTTGTTCATCCCCCCGCCCCCTCCCTTAGAATAGCTTTTAGTTTCTCCTTCGTTTTGTTTGTGTCCGATATTTGTTTTGAGGTCCGACTAATTTGAATTTGTGTTGGGAGGTTTCATTTTTAAGGCTTCTCCGACCAATGATTACTCTATTTTCAGAGTTCAAATCCCAAGATTGTCGTGATTCTAGTCAAGGATTAAGAGATACTTTCGAAGGTTGTTTTAGTGTTCATCTTGGTTTCTCATCCGGAGTCTGGAATCTGTTGGAGCCCAATTATTATGTATTCGTGTCCAGAAGTCCTAGTTTTAAGGCTCCTGACCCAATGCAACTACATTTTCAGAGCTTGAACCTTAGATCTGTGGTTAACGATTGAGTGGTACTTATAAGTGTTGTTTTTAGTATTCTTTTTAGTTTCCCACCTGGTGTCCAACATCCGATTTGGAGCATGACTAATCCGAATTCACATTGGGAAGTCCCACTTTGAGGGTTAAGGCTCCTGACAACAGCGACTTTATTTCTAGAGCTCGGATCTGGAACTTGATTAAGGATGGAGGGACACTTACCGTCTGCTCGAGTATATTTGTGGTTGCAATTAATGAAATTTTCTTTGTGGTTGCAGGAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG</genome_strand>
        <mrna_strand>CTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332866" ref_strand="+" ref_description="SGN-U332866        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr2:15215706-15217918 REVERSE | Aliases: F2H17.10, F2H17_10(evalue: 7e-55, score=209) genbank/nr: gi|18404095|ref|NP_565841.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|25408458|pir||H84778 hypothetical protein At2g36290 [imported] - Arabidopsis thaliana gi|4510348|gb|AAD21437.1| expressed protein [Arabidopsis thaliana](evalue: 4e-53, score=209)">
      <seq>tttcctttaaattctttaagagaaaaaaaaaaaaatgagcaaaaaaatttcttcagcatcagccaggtctcatactagaaaaaataaacagatgaagagttcaattccacttcattcagggatgtttgggaaaattgtagcagtcgtctttgtggggttcgtggcatatgcttatcgagcaatgcagcctcctccatcgaaaatttgtggcgcccctgatggccctcctgttacatcacctagagttaaacttagcgatggacgatacttagcttacaaagaacatggtataccaagagatcaagcaaaacataagattgtgttcatccacggatatgattctaacagacacgatgctgttgttgcaactggcctctctccggaggttattgagaacttaggagtatacattgtttcaattgatagacctggttatggagaaagtgatcctaatccgaaacgaacagtaaaaagcttggcgtttgatgtacaagaacttgctgatcaattatggctcgggtccaaattctacgtcattggattttcgatgggaggacaagctgtttggaccttgctcaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="-" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31195" stop="29013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30895" g_stop="30777" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30776" i_stop="29910" i_length="867">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29909" g_stop="29647" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="382" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29646" i_stop="29515" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29514" g_stop="29313" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="584" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="-" ref_id="SGN-U332866" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30895" e_stop="30777"/>
          <exon e_start="29909" e_stop="29647"/>
          <exon e_start="29514" e_stop="29313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTAAATTCTTTAAGAGAAGAAAAAAAAAATGAGCAAAAAAATTTCTTCAGCATCAGCCAGGTCTCATACTAGAAAAAATAAACAGATGAAGAGTTCAATTCCACTTCATTCAGGTACTCAATTTTTCAAATTTTTAATTTCTTTTCTATTGGACACATTTATTTTTACGATGATATGATATGAGCGTAAATAAAGAATAAGAATTCATATGGTCGATCTCGACTTGTTTTAGAGAATATTTCATGATATGTTTGTAGCTATTAGAATGACATTTACTTACAATGAATTTCAGAAAGTTGTGATTTTTATTTGAAATTCTTCACATTTGTATAGTTTGGTTATTAATGCTCTTATGTATAATATGAGATATATTGGGTTTGTCTTGGTTGAAAAAATGAGTTAGAGGCGGAGTCAGAATTTTTAATTTTCGATTAAAGGTTAGAGTTTAATCAGAATAATTGTTGTGGCTCCCGTTCATGAAGTGTGTGACCATTTTCTTCTGAAAGGTTAAAGGTTTTAGATAGAGTACATTTTTGTTTACCTAATTATATCTTCAATACGCCTCTCAGGAGCTAATTTTTTTTATGGGTCGAGCACGTGGAATTTTTTTTCTTTTTTGAAAATGTATGGTTGTGAGACTCGATACTAAGATCTATGTTTGTTCTGATCCCATGTGAAGTATGTAACGATCTCGTCTAAATGCTTAAGTTAGAATTTAGCATATCTAGCTTGTAATCTTCTTTAAAAATGTGGTTGAAATTGTTTGAGCTAGCTTGAAATCTTGTTGAAGTCATGAAATTATGTTGGTCGGACTCTTCAAAAATGATGCTACAGCTATATGAGATCCTTAAAAATGCATAGCTATTGTGAGGACCGACACACACCTGGTTGTATTTTTGAAGAGCCCGAGCAACAGAGGCAGAGCAAGTGTGTTCTGTTTTCTTTGTTTTGAAACTTCATTCCAAGCGGTAAAATTTCAGGGATGTTTGGGAAAATTGTAGCAGTCGTCTTTGTGGGGTTCGTGGCATATGCTTATCGAGCAATGCAGCCTCCTCCATCGAAAATTTGTGGCGCCCCTGATGGCCCTCCTGTTACATCACCTAGAGTTAAACTTAGCGATGGACGATACTTAGCTTACAAAGAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCGGTAACTCTCCTCTCATCCGTTAATTATCTTAACTCCATCTTTATTTCTTAGTAGCTCAGTTGGTTGACTAGCTGAACTTTTTACCTTGTTCATTTTTATAACTTTTTTGTTAGTAAATTGCTGTTTTTCCAGGAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATA</genome_strand>
        <mrna_strand>TTTCCTTTAAATTCTTTAAGAGAAAAAAAAAAAAATGAGCAAAAAAATTTCTTCAGCATCAGCCAGGTCTCATACTAGAAAAAATAAACAGATGAAGAGTTCAATTCCACTTCATTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTTGGGAAAATTGTAGCAGTCGTCTTTGTGGGGTTCGTGGCATATGCTTATCGAGCAATGCAGCCTCCTCCATCGAAAATTTGTGGCGCCCCTGATGGCCCTCCTGTTACATCACCTAGAGTTAAACTTAGCGATGGACGATACTTAGCTTACAAAGAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCG....................................................................................................................................GAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTATGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315340" ref_strand="+" ref_description="SGN-U315340        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr2:15215706-15217918 REVERSE | Aliases: F2H17.10, F2H17_10(evalue: 2e-128, score=456) genbank/nr: gi|18404095|ref|NP_565841.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|25408458|pir||H84778 hypothetical protein At2g36290 [imported] - Arabidopsis thaliana gi|4510348|gb|AAD21437.1| expressed protein [Arabidopsis thaliana](evalue: 1e-126, score=456)">
      <seq>cagcaaataattcaattgtgaccatcaacctcatatctcttctcatttttttttattggatatttactttgtgttcttgaattgttcaaccactttttatttaaagttagataagatttcttctttcaacttaaatatcaatatttttaaagggtattttggttaagattttcttcttttcttgaaaatctttccaattttttattttttttgggaatgacgataaaaatgatagcaatttttggtattgtgatattggcactaatttataaggcaattattccaccatcaccaaagatttgtggttcaccaaatggacctttaattacagcaccaagaattaagctttctgatgggagatatttggcttataaagaaaatggtgttcctagagatgaagcaaaacacaaatttgtattcattcatggctttgattgtgttagacatgatgttgctttgctcacaactatttctcctgaggttatgcaaagtttgggaatctatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacaccaaagaccttagctcttgatattgaagaattagttgatcaattggaattgggacctaaattttatgttataggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagcaattcttctaacaccagtgactaactactggtggggtagtttcccagcaaacttgactaaacaagcgtactacgaacagctcgtgcaggatcaatggacgttgcggattgcacactacttaccatggctgacttactggtggaacactcaaagattgtttccttcttccagcgttgcaacgttcagtgaggatattctgttcgagcaagacagagttctaatgcctatctttgattcgtatcagagtaaatatcgggacttggtaagacagcaaggggagtacgagtccatccatcgcgacataatgatagggttcgggacatgggagtttgatccgatggaactagaaaacccattccctaacggggaaggctccgttcacatctggcaaggcgatgaagacgggcatgtaccagtcattctacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggccatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgaccacttttgtcattgaacaaatttgaatatgtagttaataattaaatttagctatggcgctcgaactcttaaaacttattgtccttcaaaagctatgaatttttaaaaagttcgagcaacgaaggttctcggttaagtagatgataaatctatattatggggatggtgtaatattggattcatgactctttgtcattgaccaaacttgaaaatttgttgataattcagtcactttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31330" stop="34895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31631" g_stop="31953" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="477" r_length="324" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31954" i_stop="32657" i_length="704">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32658" g_stop="32869" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="689" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33134" g_stop="33401" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="957" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33755" g_stop="34271" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="958" r_stop="1454" r_length="497" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34272" i_stop="34515" i_length="244">
            <donor d_prob="0.000" d_score="0.72"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34516" g_stop="34594" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1455" r_stop="1534" r_length="80" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1535" polyA_stop="1548"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-U315340" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>1399</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31631" e_stop="31953"/>
          <exon e_start="32658" e_stop="32869"/>
          <exon e_start="33134" e_stop="33401"/>
          <exon e_start="33755" e_stop="34271"/>
          <exon e_start="34516" e_stop="34594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTGGTTAAGATTTTCTTCTTTTCTTG-TTTTCTTTCCAATTTTTTATTTTTTTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTATGTATCATCTTCACTTTGTTTCCTTTTATCCCCTTTTTTGAATTGTTTTATTGCGTTTTGAAGTCTAACTAGTATTAAGGCTTTTGAACAAAGATAGACTTTATTTTCATAGCTCGAATCCCAAGATGAGGGGGATTCTTTTATATAAGTATTCTTTTTTTATTTTTTGTTGTTTGGGGTCTCACTAATTTGAATTTGTGTTTTAGGAAGTTTCGCTTTTATGGCTTTTCAACAAGTGCAACTCCGTTTTTAGAGCGTGAGTCTAAGATATCTGGTTAACGATGGTGTTGTTTTAAGTATTCTTTTTGGTTTCTCAACTGGTGTCAGACACTCGTTGGAGCCTCAGACTAATCCGAATTCATGATGTATGGAAGTCTCACTTTTTAAGACTTGACTGAACGCGACTCTATTTCTAGAGTTCGAACCCTAGATCTCTGGTTAACAATGGAAGAAATACTATAAAAGATTGTTTTTAGTATTCCTTTTTGGTTCCATCACTTAGTATCCAACACTCATTTTGCAGTTCGACTAATTGATTGTTTTTACTTTTCTTTTTGGTCCCCACTAAGTGTCCAACTCCCATTTTGTAGCTCGAATATTTTGAACAAGATTTCTGATTAAGGATGTAGCAATATTTACCAGTTACCACCACTCGAATGTATTTGTGGATGTAATTAATGAAATTTTATTTATGGTTGCAGGAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGGGTGAGTACTCGTTTAGCTATTTAGCATGTCCTTATTTTAGTGGCGGATCTAACAATGTATGAAAAATAAGAACAGATTTATGTGTAATCAGAGTAATGGAATGTCAATATTTTAGGTTAAGCAACGATAGAGTTTAAGTTATATGCATTGTCAGTATAGATGTTTCTATATCACCGGGCAACAATAGACAACTCTTCGTATCAAGTTTGATATGGCCATATATAAAGATAGTGGAAAAATTCATTTACACTGTCAGTGTATATAACTTGATTCCATAATGATACGTGTGGATTCTGTTCTTTTAACATTTCCGAACTCTGAGTTCTGTTTTGTTTTTCTGAATTTGAGGTTAGGACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCTATGTCGCTCGAACTCTTAAAACTTATCGTCCTTCTAAAACTATGAATTTTTAAAGAGTTCGAGCAACGGAGGTTCTCGAAACAACCTTGAAGAAAAATAATTAGATTAAAACAATTATTAGAAGAAATTTATGATAAAATATATTTTACGCTACAATATATGTATCTTAACTTATGATGAATTCCGCACTCCCGAAAAATGGTAGCAGAGCAGTCAGGTTTATCCTACTGTGATGGCTCAGCTATGCATGTGAATCTCCGATGTGAAAGTCACGGTGTTACATCCTTGTATACGTTTCCCTCGGAGTAAAAAGTACTGTTGGCATTAGCCAGGTAATATAGCTGAGGGGCCAAGATGATGGTGTAATATTGGATTCATGACTC-TTGTCATTGACCAAACTTAAAAATTTGTTGATAATTCAGTCACTTTA</genome_strand>
        <mrna_strand>GTATTTTGGTTAAGATTTTCTTCTTTTCTTGAAAATCTTTCCAATTTTTTATTTTTTTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG.................................................................................................................................................................................................................................................................................................................................................................GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAACCCATTCCCTAACGGGGAAGGCTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGCCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGACCACTTTTGTCATTGAACAAATTTGAATATGTAG-T--TAA-T--A----A-TTAA----A-TTTAGCTATGGCGCTCGAACTCTTAAAACTTATTGTCCTTCAAAAGCTATGAATTTTTAAAAAGTTCGAGCAACGAAGGTTCTCG-GTTAA-GTAGATGATAAAT--CTATATT....................................................................................................................................................................................................................................................ATGGGGATGGTGTAATATTGGATTCATGACTCTTTGTCATTGACCAAACTTGAAAATTTGTTGATAATTCAGTCACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335101" ref_strand="+" ref_description="SGN-U335101        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to SP:P22862:ESTE_PSEFL Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase) {Pseudomonas fluorescens}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr3:20091904-20093123 FORWARD | Aliases: F24B22.200(evalue: 1e-68, score=191) genbank/nr: gi|15232465|ref|NP_190992.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana](evalue: 1e-66, score=191)">
      <seq>ctcatactcgtaaagctaagcaaaagacttctttccctcttgcttttggaatgatgagaaatatgatagccctttttggaatagtgatattggcactgatttatagggcaattatgcctccaccaccgaagatttgtggttcatcaaatggacctctaattacagcaccaagagtgaagctttctgatgggagatatttggcatataaagaaaatggtgttcctagagaccaagcaaaacacaaatttgttttcatccatggctttgattgtgtcagacatgatgttgctttgctcacaactacttctcctgtatgagcttatgcaaagtttgggaatatatattgtgtcaattgatagacctggttatggtgaaagtgatcctcatccaaaaagaacgccaaagactttagctcttgatatagaggaattagctgatcaattggaattaggatctaagttttatgttatcggattttctatgggtggacaagctgtttggggccttctcaagtatattcctcacagattggctggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="31379" stop="33175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31686" g_stop="31957" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="315" r_length="272" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31958" i_stop="32657" i_length="700">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32658" g_stop="32869" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="527" r_length="212" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264">
            <donor d_prob="0.558" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33134" g_stop="33146" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="540" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-U335101" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31686" e_stop="31957"/>
          <exon e_start="32658" e_stop="32869"/>
          <exon e_start="33134" e_stop="33146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTATGTATCATCTTCACTTTGTTTCCTTTTATCCCCTTTTTTGAATTGTTTTATTGCGTTTTGAAGTCTAACTAGTATTAAGGCTTTTGAACAAAGATAGACTTTATTTTCATAGCTCGAATCCCAAGATGAGGGGGATTCTTTTATATAAGTATTCTTTTTTTATTTTTTGTTGTTTGGGGTCTCACTAATTTGAATTTGTGTTTTAGGAAGTTTCGCTTTTATGGCTTTTCAACAAGTGCAACTCCGTTTTTAGAGCGTGAGTCTAAGATATCTGGTTAACGATGGTGTTGTTTTAAGTATTCTTTTTGGTTTCTCAACTGGTGTCAGACACTCGTTGGAGCCTCAGACTAATCCGAATTCATGATGTATGGAAGTCTCACTTTTTAAGACTTGACTGAACGCGACTCTATTTCTAGAGTTCGAACCCTAGATCTCTGGTTAACAATGGAAGAAATACTATAAAAGATTGTTTTTAGTATTCCTTTTTGGTTCCATCACTTAGTATCCAACACTCATTTTGCAGTTCGACTAATTGATTGTTTTTACTTTTCTTTTTGGTCCCCACTAAGTGTCCAACTCCCATTTTGTAGCTCGAATATTTTGAACAAGATTTCTGATTAAGGATGTAGCAATATTTACCAGTTACCACCACTCGAATGTATTTGTGGATGTAATTAATGAAATTTTATTTATGGTTGCAGGAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAGGTATCGTATCGTTGTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACCCGTTACCTCCCACCAGCATAGATACAGATGAGAAAGAAGTCATCTTGCATATCGTTTAAGCTCTTTGGATTTAACTTATAGACACTGACGATGCAAATGACTTTTATAGTATTAGTGTGTGTTAATGTATCGTAGTTATCTTTTAGGTGACCTTCGATTCTCAGGTGTGTACAAGCTTCATATTAACTTGTGACATTTGAAATGTGTTAACAGATTGGCTGGAGCA</genome_strand>
        <mrna_strand>TTTTGGAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG........................................................................................................................................................................................................................................................................ATTGGCTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335100" ref_strand="-" ref_description="SGN-U335100        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydrolase, alpha/beta fold family protein, low similarity to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (Rhodococcus sp. RHA1) GI:8978311; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr2:15215706-15217918 REVERSE | Aliases: F2H17.10, F2H17_10(evalue: 1e-29, score=126) genbank/nr: gi|18404095|ref|NP_565841.1| hydrolase, alpha/beta fold family [Arabidopsis thaliana] gi|25408458|pir||H84778 hypothetical protein At2g36290 [imported] - Arabidopsis thaliana gi|4510348|gb|AAD21437.1| expressed protein [Arabidopsis thaliana](evalue: 1e-27, score=126)">
      <seq>gtaagacagcaaggggagtacgagttcttccctcgccgacataatgatagggttcgggacatgggagtaaaataagatggaactagaaaatccattccctaacggggaagggtccgttcacatttggcaaggcgatgaagacgggcatgtaccagtcattttacaacgattcatcgcgaagaaactaccatggattcactatcatgaaatgaaaggtggaggtcatatgtttccatgggctgaaggaatgggagataaagttatgaagacatttttacttggagagccttttgttatgtaaaagctataaagggcttttagtattggattcaatgatcatttttgtcattgaacaaatttgaataggtagttaataattaaattctacttaagttgattttagatagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0038P23-PKwNE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0038P23.1" temp_strand="+" temp_description="C09SLf0038P23.1  AC234214.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0038P23 upload_account_name:spain (1 - 36431)">
        <position start="33461" stop="34465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33761" g_stop="34161" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="423"/>
      <MATCH_line gen_id="C09SLf0038P23.1" gen_strand="+" ref_id="SGN-U335100" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0038P23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335100" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33761" e_stop="34161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGACAGCAAGGGGAGTACGAGTCCATCCATCG-CGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTA</genome_strand>
        <mrna_strand>GTAAGACAGCAAGGGGAGTACGAGTTCTTCCCTCGCCGACATAATGATAGGGTTCGGGACATGGGAGTAAAATAAGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATTTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTTTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATAGGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8799" PGL_stop="9158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8799" e_stop="9158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="8799" e_stop="9158" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8799" stop="9158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</gDNA_template>
            <first_frame> F  I  A  M  Y  I  Y  E  P  I  I  L  G  R  E  T  S  I  D  I  W  I  M  E  K  N  G  Y  W  T  K  N  M  R  I  G  P  F  L  N  I  K  R  S  I  G  Y  G  K  N  G  E  I  F  L  E  V  V  T  Y  Q  L  D  I  F  D  P  F  L  K  N  N  K  V  L  S  Q  Q  K  N  G  Y  S  L  Q  A  F  A  Y  N  E  S  L  V  S  L  K  N  I  S  F  L  *  F  S  W  L  M  I  *  M  K  M  M  A  I  I  *  I  L </first_frame>
            <second_frame>  S  L  L  C  T  F  M  S  Q  *  F  L  V  E  K  Q  V  L  T  Y  G  L  W  R  K  M  A  I  G  L  K  I  *  E  L  A  L  F  *  I  S  K  D  Q  L  D  M  E  K  M  G  K  F  F  L  K  L  L  H  I  N  W  T  Y  L  I  L  F  *  R  T  I  R  F  L  A  N  K  K  M  A  T  L  C  K  L  L  L  T  M  K  A  *  F  H  *  K  I  F  H  S  C  N  L  V  G  *  *  Y  K  *  K  *  W  L  *  F  K  F   </second_frame>
            <third_frame>   H  C  Y  V  H  L  *  A  N  N  S  W  *  R  N  K  Y  *  H  M  D  Y  G  E  K  W  L  L  D  *  K  Y  E  N  W  P  F  F  K  Y  Q  K  I  N  W  I  W  K  K  W  G  N  F  S  *  S  C  Y  I  S  I  G  H  I  *  S  F  F  K  E  Q  *  G  S  *  P  T  K  K  W  L  L  F  A  S  F  C  L  Q  *  K  L  S  F  I  E  K  Y  F  I  L  V  I  *  L  V  N  D  I  N  E  N  D  G  Y  N  L  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8799" stop="9107"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIAMYIYEPIILGRETSIDIWIMEKNGYWTKNMRIGPFLNIKRSIGYGKNGEIFLEVVTYQLDIFDPFLKNNKVLSQQKNGYSLQAFAYNESLVSLKNISFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="23992" PGL_stop="16935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23992" e_stop="23795"/>
            <exon e_start="23451" e_stop="22958"/>
            <exon e_start="22363" e_stop="22347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.436" e_score="0.998"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23992" e_stop="23795" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23794" i_stop="23452" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="23451" e_stop="22958" e_length="494"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.436">
            <gDNA_intron_boundary i_start="22957" i_stop="22364" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="0.941">
            <gDNA_exon_boundary e_start="22363" e_stop="22347" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23992" stop="23795"/>
              <exon start="23451" stop="22958"/>
              <exon start="22363" stop="22347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23445" stop="23051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335100" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAAGCGTACTACGAACAGCTTGTGCAGGATCAATGGACGCTTCGCATCGCACACTATTTTCCATGGCTGACTTACTGGTGGAACACTCAAAAATTATTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAACAAGACAGAGTTCTTATGCCTATCTTTGATTCATATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACCTAATGATAGGTTTCGGGACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCATAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTAAAAAGGGGCTATTGGTTTTAGTATTGGATTCAACGATCATTTTTTGTCATTGAACAAATTTGAATATTTTGTTGATAATTATATCCCACGTAAGTCGTTGGGACTCTTCAAAAATATTGTTATATACTTGCATGTAAGTCGGATCTTCCAAATACTTTACATTTTTGAAGAGTTCGATTAAC : CAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  F  P  W  L  T  Y  W  W  N  T  Q  K  L  F  P  S  S  S  V  A  T  G  S  E  D  I  L  L  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  H  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  K  R  G  Y  W  F  *  Y  W  I  Q  R  S  F  F  V  I  E  Q  I  *  I  F  C  *  *  L  Y  P  T  *  V  V  G  T  L  Q  K  Y  C  Y  I  L  A  C  K  S  D  L  P  N  T  L  H  F  *  R  V  R  L  T :   K  K  K  K  K  </first_frame>
            <second_frame>  N  K  R  T  T  N  S  L  C  R  I  N  G  R  F  A  S  H  T  I  F  H  G  *  L  T  G  G  T  L  K  N  Y  F  L  L  P  A  L  Q  R  A  A  R  I  F  F  *  N  K  T  E  F  L  C  L  S  L  I  H  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  V  S  G  H  G  N  L  I  R  W  N  *  K  T  H  S  I  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  *  K  G  A  I  G  F  S  I  G  F  N  D  H  F  L  S  L  N  K  F  E  Y  F  V  D  N  Y  I  P  R  K  S  L  G  L  F  K  N  I  V  I  Y  L  H  V  S  R  I  F  Q  I  L  Y  I  F  E  E  F  D  *   : P  K  K  K  K  K </second_frame>
            <third_frame>   T  S  V  L  R  T  A  C  A  G  S  M  D  A  S  H  R  T  L  F  S  M  A  D  L  L  V  E  H  S  K  I  I  S  F  F  Q  R  C  N  G  Q  R  G  Y  S  F  R  T  R  Q  S  S  Y  A  Y  L  *  F  I  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  P  N  D  R  F  R  D  M  G  I  *  S  D  G  T  R  K  P  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  K  K  G  L  L  V  L  V  L  D  S  T  I  I  F  C  H  *  T  N  L  N  I  L  L  I  I  I  S  H  V  S  R  W  D  S  S  K  I  L  L  Y  T  C  M  *  V  G  S  S  K  Y  F  T  F  L  K  S  S  I  N  :  Q  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23992" stop="23795"/>
                    <exon start="23451" stop="23146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQAYYEQLVQDQWTLRIAHYFPWLTYWWNTQKLFPSSSVATGSEDILLEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDLMIGFGTWEFDPMELENPFHNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17637" e_stop="16935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="17637" e_stop="16935" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17637" stop="16935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAGTTGCTCATTGCATCTAGTCATGTTCTCACGCTTGCTTCTCGTTGTGTAGACCGTGCTTTCAAGGGAAGCAATTGTTTGACTAGGCTTAATGCCTTTGTCCGATAAGTTTGTATCGAAAACAGATAACTTAATTGGTGTTTCGTTTCCTAAAGTTTTGGATTTTCTTGTGCTGTTTGAGCTCACTGTTTCTATTACTCAACTCTCCTTTCAGGCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATTCGGAACATGGGAATTCGATCCAATGGATCTTGAGAACCCGTTCCCTAACAATGAAGGTTCCGTTCACTTATGGCAAGGCGATGAGGATAGGCTCTCGCCCGTCACACTACAAAGGTACATTTCACAGCAATTACCATGGATCCAATATCATGAAATTCCAGGTGCTGGTCATTTGATTCCAATGATTGATGGAATTGGAGAGAAAATCTTCAAGACTCTTTTAACTGCGTAAACTCACCATTTTTATAGCTACGCGCAAGGTTTCATCTTGCACGTCGTGATGTGTTTTAAGTTGTCTACATATCTCTGGTTTTTGTCGATCGTTAAGTTTCATATTTTGATGTCAAAGAGTTTTGACTTTGAGAGAAATATTTTGTATTACAAATTCTTTTGTTTGTAATTAAGGATAGTGATATTTAAACATTTT</gDNA_template>
            <first_frame> A  K  L  L  I  A  S  S  H  V  L  T  L  A  S  R  C  V  D  R  A  F  K  G  S  N  C  L  T  R  L  N  A  F  V  R  *  V  C  I  E  N  R  *  L  N  W  C  F  V  S  *  S  F  G  F  S  C  A  V  *  A  H  C  F  Y  Y  S  T  L  L  S  G  T  G  K  T  T  R  R  I  *  I  P  P  P  R  L  N  D  W  I  R  N  M  G  I  R  S  N  G  S  *  E  P  V  P  *  Q  *  R  F  R  S  L  M  A  R  R  *  G  *  A  L  A  R  H  T  T  K  V  H  F  T  A  I  T  M  D  P  I  S  *  N  S  R  C  W  S  F  D  S  N  D  *  W  N  W  R  E  N  L  Q  D  S  F  N  C  V  N  S  P  F  L  *  L  R  A  R  F  H  L  A  R  R  D  V  F  *  V  V  Y  I  S  L  V  F  V  D  R  *  V  S  Y  F  D  V  K  E  F  *  L  *  E  K  Y  F  V  L  Q  I  L  L  F  V  I  K  D  S  D  I  *  T  F  </first_frame>
            <second_frame>  Q  S  C  S  L  H  L  V  M  F  S  R  L  L  L  V  V  *  T  V  L  S  R  E  A  I  V  *  L  G  L  M  P  L  S  D  K  F  V  S  K  T  D  N  L  I  G  V  S  F  P  K  V  L  D  F  L  V  L  F  E  L  T  V  S  I  T  Q  L  S  F  Q  A  Q  V  R  Q  Q  G  E  Y  E  S  L  H  R  D  L  M  I  G  F  G  T  W  E  F  D  P  M  D  L  E  N  P  F  P  N  N  E  G  S  V  H  L  W  Q  G  D  E  D  R  L  S  P  V  T  L  Q  R  Y  I  S  Q  Q  L  P  W  I  Q  Y  H  E  I  P  G  A  G  H  L  I  P  M  I  D  G  I  G  E  K  I  F  K  T  L  L  T  A  *  T  H  H  F  Y  S  Y  A  Q  G  F  I  L  H  V  V  M  C  F  K  L  S  T  Y  L  W  F  L  S  I  V  K  F  H  I  L  M  S  K  S  F  D  F  E  R  N  I  L  Y  Y  K  F  F  C  L  *  L  R  I  V  I  F  K  H  F </second_frame>
            <third_frame>   K  V  A  H  C  I  *  S  C  S  H  A  C  F  S  L  C  R  P  C  F  Q  G  K  Q  L  F  D  *  A  *  C  L  C  P  I  S  L  Y  R  K  Q  I  T  *  L  V  F  R  F  L  K  F  W  I  F  L  C  C  L  S  S  L  F  L  L  L  N  S  P  F  R  H  R  *  D  N  K  E  N  M  N  P  S  T  A  T  *  *  L  D  S  E  H  G  N  S  I  Q  W  I  L  R  T  R  S  L  T  M  K  V  P  F  T  Y  G  K  A  M  R  I  G  S  R  P  S  H  Y  K  G  T  F  H  S  N  Y  H  G  S  N  I  M  K  F  Q  V  L  V  I  *  F  Q  *  L  M  E  L  E  R  K  S  S  R  L  F  *  L  R  K  L  T  I  F  I  A  T  R  K  V  S  S  C  T  S  *  C  V  L  S  C  L  H  I  S  G  F  C  R  S  L  S  F  I  F  *  C  Q  R  V  L  T  L  R  E  I  F  C  I  T  N  S  F  V  C  N  *  G  *  *  Y  L  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17552" stop="17130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLMPLSDKFVSKTDNLIGVSFPKVLDFLVLFELTVSITQLSFQAQVRQQGEYESLHRDLMIGFGTWEFDPMDLENPFPNNEGSVHLWQGDEDRLSPVTLQRYISQQLPWIQYHEIPGAGHLIPMIDGIGEKIFKTLLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22495" e_stop="22263"/>
            <exon e_start="20781" e_stop="20522"/>
            <exon e_start="20440" e_stop="20229"/>
            <exon e_start="19536" e_stop="19272"/>
            <exon e_start="17420" e_stop="17362"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22495" e_stop="22263" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="22262" i_stop="20782" i_length="1481"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20781" e_stop="20522" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20521" i_stop="20441" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20440" e_stop="20229" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="20228" i_stop="19537" i_length="692"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19536" e_stop="19272" e_length="265"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19271" i_stop="17421" i_length="1851"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="17420" e_stop="17362" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22495" stop="22263"/>
              <exon start="20781" stop="20522"/>
              <exon start="20440" stop="20229"/>
              <exon start="19536" stop="19272"/>
              <exon start="17420" stop="17362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGATTTCGAACAATTATTAAATCAGTGAGATGAGACTCAGATCTCTTCAACCTTCATTTTTGTATAATTTTTGTAAATCTACAGTGTGAATACAAAATTTGTAATTTCAAAATCAAGAACTTGATTCAGCAAAAAAAAAAAAAAAATGGCAACCAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGCAAAAAAGTTCTATTCCTTTTCCTTCTG : GGGCATTTGCGAAAATTCTTCTGGTTGTTTTGATTGGGTTATTAGCGTGGGGTTATCAAGCAACACGACCACCTCCCCCTAAGACCTGTGGATCCCCAGATGGCCCTCCCGTCACTGCACCTAGAATCAAACTTAGTGATGGAAGACACTTGGCTTACAAGGAGACTGGTGTACTTAGAGATAATGCAAAATATAAGATTGTATATATCCATGGGTACGATGGTTGTAGGCATGATGTTCCAATTAACATCCTCTCTCAA : GATGTCATCGAAAGTTTAGGAGTGTACATTGTTTCCTTTGACAGACCTGGTTATGGAGAAAGTGATCCTAATCCAAAACGAACAGTCAAGAGCTTAGCTTTTGACATACAGGAGCTTGCTGATCAATTAGGTCTAGGATCGAAATTCTATGTTATGGGATTTTCAATGGGGGGACAGGCTGTTTGGACCTGTCTCAGATACATTCCTCACAG : GTTGGCAGGTGCTGCTCTTATTGCACCAGTTGTCAACTATTGGTGGCCTAGGTTTCCTGCTAATATGTCCCAAGAAGCATTCAACCTTCGACTTCCTCAAGACAAATGGACTCTTCGTGTTGCTCATTACCTTCCGTGGCTCACCTATTGGTGGAACACTCAGAAGTTCTTTCCTTCATGCAGTGCTGCAGGTCGCAACCCTGCAATTTTCTCTTCGAAGGACCTAGAGCTAGTTTCCAAGCAAAGTTCGAGCCAAGACTATCGT : GCACAGGTAAGACAACAAGGAGAATATGAATCCCTCCACCGCGACTTAATGATTGGATT</gDNA_template>
            <first_frame> K  R  F  R  T  I  I  K  S  V  R  *  D  S  D  L  F  N  L  H  F  C  I  I  F  V  N  L  Q  C  E  Y  K  I  C  N  F  K  I  K  N  L  I  Q  Q  K  K  K  K  N  G  N  Q  E  D  F  S  S  F  S  *  G  S  Y  S  *  S  *  A  K  K  F  Y  S  F  S  F  W :   G  I  C  E  N  S  S  G  C  F  D  W  V  I  S  V  G  L  S  S  N  T  T  T  S  P  *  D  L  W  I  P  R  W  P  S  R  H  C  T  *  N  Q  T  *  *  W  K  T  L  G  L  Q  G  D  W  C  T  *  R  *  C  K  I  *  D  C  I  Y  P  W  V  R  W  L  *  A  *  C  S  N  *  H  P  L  S   : R  C  H  R  K  F  R  S  V  H  C  F  L  *  Q  T  W  L  W  R  K  *  S  *  S  K  T  N  S  Q  E  L  S  F  *  H  T  G  A  C  *  S  I  R  S  R  I  E  I  L  C  Y  G  I  F  N  G  G  T  G  C  L  D  L  S  Q  I  H  S  S  Q  :  V  G  R  C  C  S  Y  C  T  S  C  Q  L  L  V  A  *  V  S  C  *  Y  V  P  R  S  I  Q  P  S  T  S  S  R  Q  M  D  S  S  C  C  S  L  P  S  V  A  H  L  L  V  E  H  S  E  V  L  S  F  M  Q  C  C  R  S  Q  P  C  N  F  L  F  E  G  P  R  A  S  F  Q  A  K  F  E  P  R  L  S   : C  T  G  K  T  T  R  R  I  *  I  P  P  P  R  L  N  D  W  I </first_frame>
            <second_frame>  K  D  F  E  Q  L  L  N  Q  *  D  E  T  Q  I  S  S  T  F  I  F  V  *  F  L  *  I  Y  S  V  N  T  K  F  V  I  S  K  S  R  T  *  F  S  K  K  K  K  K  M  A  T  K  K  I  S  A  A  S  A  R  A  H  T  R  K  A  K  Q  K  S  S  I  P  F  P  S   : G  A  F  A  K  I  L  L  V  V  L  I  G  L  L  A  W  G  Y  Q  A  T  R  P  P  P  P  K  T  C  G  S  P  D  G  P  P  V  T  A  P  R  I  K  L  S  D  G  R  H  L  A  Y  K  E  T  G  V  L  R  D  N  A  K  Y  K  I  V  Y  I  H  G  Y  D  G  C  R  H  D  V  P  I  N  I  L  S  Q  :  D  V  I  E  S  L  G  V  Y  I  V  S  F  D  R  P  G  Y  G  E  S  D  P  N  P  K  R  T  V  K  S  L  A  F  D  I  Q  E  L  A  D  Q  L  G  L  G  S  K  F  Y  V  M  G  F  S  M  G  G  Q  A  V  W  T  C  L  R  Y  I  P  H  R :   L  A  G  A  A  L  I  A  P  V  V  N  Y  W  W  P  R  F  P  A  N  M  S  Q  E  A  F  N  L  R  L  P  Q  D  K  W  T  L  R  V  A  H  Y  L  P  W  L  T  Y  W  W  N  T  Q  K  F  F  P  S  C  S  A  A  G  R  N  P  A  I  F  S  S  K  D  L  E  L  V  S  K  Q  S  S  S  Q  D  Y  R  :  A  Q  V  R  Q  Q  G  E  Y  E  S  L  H  R  D  L  M  I  G   </second_frame>
            <third_frame>   K  I  S  N  N  Y  *  I  S  E  M  R  L  R  S  L  Q  P  S  F  L  Y  N  F  C  K  S  T  V  *  I  Q  N  L  *  F  Q  N  Q  E  L  D  S  A  K  K  K  K  K  W  Q  P  R  R  F  Q  Q  L  Q  L  G  L  I  L  V  K  L  S  K  K  V  L  F  L  F  L  L  :  G  H  L  R  K  F  F  W  L  F  *  L  G  Y  *  R  G  V  I  K  Q  H  D  H  L  P  L  R  P  V  D  P  Q  M  A  L  P  S  L  H  L  E  S  N  L  V  M  E  D  T  W  L  T  R  R  L  V  Y  L  E  I  M  Q  N  I  R  L  Y  I  S  M  G  T  M  V  V  G  M  M  F  Q  L  T  S  S  L  K :   M  S  S  K  V  *  E  C  T  L  F  P  L  T  D  L  V  M  E  K  V  I  L  I  Q  N  E  Q  S  R  A  *  L  L  T  Y  R  S  L  L  I  N  *  V  *  D  R  N  S  M  L  W  D  F  Q  W  G  D  R  L  F  G  P  V  S  D  T  F  L  T   : G  W  Q  V  L  L  L  L  H  Q  L  S  T  I  G  G  L  G  F  L  L  I  C  P  K  K  H  S  T  F  D  F  L  K  T  N  G  L  F  V  L  L  I  T  F  R  G  S  P  I  G  G  T  L  R  S  S  F  L  H  A  V  L  Q  V  A  T  L  Q  F  S  L  R  R  T  *  S  *  F  P  S  K  V  R  A  K  T  I  V :   H  R  *  D  N  K  E  N  M  N  P  S  T  A  T  *  *  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22368" stop="22263"/>
                    <exon start="20781" stop="20522"/>
                    <exon start="20440" stop="20229"/>
                    <exon start="19536" stop="19272"/>
                    <exon start="17420" stop="17364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKKKKKMATKKISAASARAHTRKAKQKSSIPFPSGAFAKILLVVLIGLLAWGYQATRPPPPKTCGSPDGPPVTAPRIKLSDGRHLAYKETGVLRDNAKYKIVYIHGYDGCRHDVPINILSQDVIESLGVYIVSFDRPGYGESDPNPKRTVKSLAFDIQELADQLGLGSKFYVMGFSMGGQAVWTCLRYIPHRLAGAALIAPVVNYWWPRFPANMSQEAFNLRLPQDKWTLRVAHYLPWLTYWWNTQKFFPSCSAAGRNPAIFSSKDLELVSKQSSSQDYRAQVRQQGEYESLHRDLMIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27407" PGL_stop="24388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27407" e_stop="27360"/>
            <exon e_start="25499" e_stop="25233"/>
            <exon e_start="24599" e_stop="24388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.837" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="27407" e_stop="27360" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27359" i_stop="25500" i_length="1860"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25499" e_stop="25233" e_length="267"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25232" i_stop="24600" i_length="633"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24599" e_stop="24388" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27407" stop="27360"/>
              <exon start="25499" stop="25233"/>
              <exon start="24599" stop="24388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATACTCGTAAAGCTAAGCAAAAGACTTCTTTCCCTCTTCCTTTTG : GAATGATGAGAAATATGATAGCCCTTTTTGGAATAGTGATATTGGCACTGATTTATAGGGCAATTATGCCTCCACCACCGAAGATTTGTGGTTCATCAAATGGACCTCTAATTACAGCACCAAGAGTGAAGCTTTCTGATGGGAGATATTTGGCATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACACAAATTTGTTTTCATCCATGGCTTTGATTGTGTCAGACATGATGTTGCTTTGCTCACAACTACTTCTCCTGTAT : GAGCTTATGCAAAGTTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCAAAAAGAACGCCAAAGACTTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGGAATTAGGATCTAAGTTTTATGTTATCGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG</gDNA_template>
            <first_frame> L  I  L  V  K  L  S  K  R  L  L  S  L  F  L  L  :  E  *  *  E  I  *  *  P  F  L  E  *  *  Y  W  H  *  F  I  G  Q  L  C  L  H  H  R  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  *  S  F  L  M  G  D  I  W  H  I  K  K  M  V  F  L  E  T  K  Q  N  T  N  L  F  S  S  M  A  L  I  V  S  D  M  M  L  L  C  S  Q  L  L  L  L  Y  :  E  L  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  K  R  T  P  K  T  L  A  L  D  I  E  E  L  A  D  Q  L  E  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H   </first_frame>
            <second_frame>  S  Y  S  *  S  *  A  K  D  F  F  P  S  S  F  W :   N  D  E  K  Y  D  S  P  F  W  N  S  D  I  G  T  D  L  *  G  N  Y  A  S  T  T  E  D  L  W  F  I  K  W  T  S  N  Y  S  T  K  S  E  A  F  *  W  E  I  F  G  I  *  R  K  W  C  S  *  R  P  S  K  T  Q  I  C  F  H  P  W  L  *  L  C  Q  T  *  C  C  F  A  H  N  Y  F  S  C  M :   S  L  C  K  V  W  E  Y  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  Q  K  E  R  Q  R  L  *  L  L  I  *  R  N  *  L  I  N  W  N  *  D  L  S  F  M  L  S  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T  </second_frame>
            <third_frame>   H  T  R  K  A  K  Q  K  T  S  F  P  L  P  F   : G  M  M  R  N  M  I  A  L  F  G  I  V  I  L  A  L  I  Y  R  A  I  M  P  P  P  P  K  I  C  G  S  S  N  G  P  L  I  T  A  P  R  V  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  Q  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  T  S  P  V   : *  A  Y  A  K  F  G  N  I  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  K  K  N  A  K  D  F  S  S  *  Y  R  G  I  S  *  S  I  G  I  R  I  *  V  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25370" stop="25233"/>
                    <exon start="24599" stop="24390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLMGDIWHIKKMVFLETKQNTNLFSSMALIVSDMMLLCSQLLLLYELMQSLGIYIVSIDRPGYGESDPHPKRTPKTLALDIEELADQLELGSKFYVIGFSMGGQAVWGLLKYIPH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27405" stop="27360"/>
                    <exon start="25499" stop="25233"/>
                    <exon start="24599" stop="24598"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTRKAKQKTSFPLPFGMMRNMIALFGIVILALIYRAIMPPPPKICGSSNGPLITAPRVKLSDGRYLAYKENGVPRDQAKHKFVFIHGFDCVRHDVALLTTTSPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30895" PGL_stop="29313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30895" e_stop="30777"/>
            <exon e_start="29909" e_stop="29647"/>
            <exon e_start="29514" e_stop="29313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.983" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="30895" e_stop="30777" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.983">
            <gDNA_intron_boundary i_start="30776" i_stop="29910" i_length="867"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29909" e_stop="29647" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29646" i_stop="29515" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="29514" e_stop="29313" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30895" stop="30777"/>
              <exon start="29909" stop="29647"/>
              <exon start="29514" stop="29313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTTTAAATTCTTTAAGAGAAGAAAAAAAAAATGAGCAAAAAAATTTCTTCAGCATCAGCCAGGTCTCATACTAGAAAAAATAAACAGATGAAGAGTTCAATTCCACTTCATTCAG : GGATGTTTGGGAAAATTGTAGCAGTCGTCTTTGTGGGGTTCGTGGCATATGCTTATCGAGCAATGCAGCCTCCTCCATCGAAAATTTGTGGCGCCCCTGATGGCCCTCCTGTTACATCACCTAGAGTTAAACTTAGCGATGGACGATACTTAGCTTACAAAGAACATGGTATACCAAGAGATCAAGCAAAACATAAGATTGTGTTCATCCACGGATATGATTCTAACAGACACGATGCTGTTGTTGCAACTGGCCTCTCTCCG : GAGGTTATTGAGAACTTAGGAGTATACATTGTTTCAATTGATAGACCTGGTTATGGAGAAAGTGATCCTAATCCGAAACGAACAGTAAAAAGCTTGGCGTTTGATGTACAAGAACTTGCTGATCAATTAGGGCTCGGGTCCAAATTCTACGTCATTGGATTTTCGATGGGAGGACAAGCTGTTTGGACCTTGCTCAAATATA</gDNA_template>
            <first_frame> F  P  L  N  S  L  R  E  E  K  K  N  E  Q  K  N  F  F  S  I  S  Q  V  S  Y  *  K  K  *  T  D  E  E  F  N  S  T  S  F  R :   D  V  W  E  N  C  S  S  R  L  C  G  V  R  G  I  C  L  S  S  N  A  A  S  S  I  E  N  L  W  R  P  *  W  P  S  C  Y  I  T  *  S  *  T  *  R  W  T  I  L  S  L  Q  R  T  W  Y  T  K  R  S  S  K  T  *  D  C  V  H  P  R  I  *  F  *  Q  T  R  C  C  C  C  N  W  P  L  S   : G  G  Y  *  E  L  R  S  I  H  C  F  N  *  *  T  W  L  W  R  K  *  S  *  S  E  T  N  S  K  K  L  G  V  *  C  T  R  T  C  *  S  I  R  A  R  V  Q  I  L  R  H  W  I  F  D  G  R  T  S  C  L  D  L  A  Q  I   </first_frame>
            <second_frame>  F  L  *  I  L  *  E  K  K  K  K  M  S  K  K  I  S  S  A  S  A  R  S  H  T  R  K  N  K  Q  M  K  S  S  I  P  L  H  S   : G  M  F  G  K  I  V  A  V  V  F  V  G  F  V  A  Y  A  Y  R  A  M  Q  P  P  P  S  K  I  C  G  A  P  D  G  P  P  V  T  S  P  R  V  K  L  S  D  G  R  Y  L  A  Y  K  E  H  G  I  P  R  D  Q  A  K  H  K  I  V  F  I  H  G  Y  D  S  N  R  H  D  A  V  V  A  T  G  L  S  P  :  E  V  I  E  N  L  G  V  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  N  P  K  R  T  V  K  S  L  A  F  D  V  Q  E  L  A  D  Q  L  G  L  G  S  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  T  L  L  K  Y  </second_frame>
            <third_frame>   S  F  K  F  F  K  R  R  K  K  K  *  A  K  K  F  L  Q  H  Q  P  G  L  I  L  E  K  I  N  R  *  R  V  Q  F  H  F  I  Q  :  G  C  L  G  K  L  *  Q  S  S  L  W  G  S  W  H  M  L  I  E  Q  C  S  L  L  H  R  K  F  V  A  P  L  M  A  L  L  L  H  H  L  E  L  N  L  A  M  D  D  T  *  L  T  K  N  M  V  Y  Q  E  I  K  Q  N  I  R  L  C  S  S  T  D  M  I  L  T  D  T  M  L  L  L  Q  L  A  S  L  R :   R  L  L  R  T  *  E  Y  T  L  F  Q  L  I  D  L  V  M  E  K  V  I  L  I  R  N  E  Q  *  K  A  W  R  L  M  Y  K  N  L  L  I  N  *  G  S  G  P  N  S  T  S  L  D  F  R  W  E  D  K  L  F  G  P  C  S  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30876" stop="30777"/>
                    <exon start="29909" stop="29647"/>
                    <exon start="29514" stop="29314"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKKKMSKKISSASARSHTRKNKQMKSSIPLHSGMFGKIVAVVFVGFVAYAYRAMQPPPSKICGAPDGPPVTSPRVKLSDGRYLAYKEHGIPRDQAKHKIVFIHGYDSNRHDAVVATGLSPEVIENLGVYIVSIDRPGYGESDPNPKRTVKSLAFDVQELADQLGLGSKFYVIGFSMGGQAVWTLLKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31631" PGL_stop="34594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31631" e_stop="31953"/>
            <exon e_start="32658" e_stop="32869"/>
            <exon e_start="33134" e_stop="33401"/>
            <exon e_start="33755" e_stop="34271"/>
            <exon e_start="34516" e_stop="34594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.558" acc_prob="0.990" e_score="0.995"/>
          <exon-intron don_prob="0.869" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="31631" e_stop="31953" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31954" i_stop="32657" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="32658" e_stop="32869" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.558" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33134" e_stop="33401" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.750">
            <gDNA_intron_boundary i_start="33402" i_stop="33754" i_length="353"/>
          </intron>
          <exon e_serial="4" e_score="0.923">
            <gDNA_exon_boundary e_start="33755" e_stop="34271" e_length="517"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34272" i_stop="34515" i_length="244"/>
          </intron>
          <exon e_serial="5" e_score="0.924">
            <gDNA_exon_boundary e_start="34516" e_stop="34594" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31631" stop="31953"/>
              <exon start="32658" stop="32869"/>
              <exon start="33134" stop="33401"/>
              <exon start="33755" stop="34271"/>
              <exon start="34516" stop="34594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33761" stop="34161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335100" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTTTGGTTAAGATTTTCTTCTTTTCTTGTTTTCTTTCCAATTTTTTATTTTTTTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCT : GAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCAATTCTTCTAACACCAGTGACTAACTACTGGTGGGGTAGTTTCCCAGCAAACTTGACTAAACAAGCGTACTACGAACAGCTCGTGCAGGATCAATGGACGTTGCGGATTGCACACTACTTACCATGGCTGACTTACTGGTGGAACACTCAAAGATTGTTTCCTTCTTCCAGCGTTGCAACGTTCAGTGAGGATATTCTGTTCGAGCAAGACAGAGTTCTAATGCCTATCTTTGATTCGTATCAGAGTAAATATCGG : GACTTGGTAAGACAGCAAGGGGAGTACGAGTCCATCCATCGCGACATAATGATAGGGTTCGGGACATGGGAGTTTGATCCGATGGAACTAGAAAATCCATTCCCTAACGGGGAAGGGTCCGTTCACATCTGGCAAGGCGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACTACCATGGATTCACTATCATGAAATGAAAGGTGGAGGTCATATGTTTCCATGGGCTGAAGGAATGGGAGATAAAGTTATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGGCTTTTAGTATTGGATTCAATGATCATTTTTGTCATTGAACAAATTTGAATATGTAGTTAATAATTAAATTCTACTTAAGTTGATTTTAGCTATGTCGCTCGAACTCTTAAAACTTATCGTCCTTCTAAAACTATGAATTTTTAAAGAGTTCGAGCAACGGAGGTTCTCGAAACAACCTTGAAGAAAAATAATTAGATT : AAGATGATGGTGTAATATTGGATTCATGACTCTTGTCATTGACCAAACTTAAAAATTTGTTGATAATTCAGTCACTTTA</gDNA_template>
            <first_frame> V  F  W  L  R  F  S  S  F  L  V  F  F  P  I  F  Y  F  F  W  E  *  R  *  K  *  *  Q  F  L  V  L  *  Y  W  H  *  F  I  R  Q  L  F  H  H  H  Q  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  L  S  F  L  M  G  D  I  W  L  I  K  K  M  V  F  L  E  M  K  Q  N  T  N  L  Y  S  F  M  A  L  I  V  L  D  M  M  L  L  C  S  Q  L  F  L  L :   R  L  C  K  V  W  E  S  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  H  K  E  H  Q  R  P  *  L  L  I  L  K  N  *  L  I  N  W  N  W  D  L  N  F  M  L  *  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E  Q  F  F  *  H  Q  *  L  T  T  G  G  V  V  S  Q  Q  T  *  L  N  K  R  T  T  N  S  S  C  R  I  N  G  R  C  G  L  H  T  T  Y  H  G  *  L  T  G  G  T  L  K  D  C  F  L  L  P  A  L  Q  R  S  V  R  I  F  C  S  S  K  T  E  F  *  C  L  S  L  I  R  I  R  V  N  I  G :   T  W  *  D  S  K  G  S  T  S  P  S  I  A  T  *  *  *  G  S  G  H  G  S  L  I  R  W  N  *  K  I  H  S  L  T  G  K  G  P  F  T  S  G  K  A  M  K  T  G  M  Y  Q  S  F  Y  N  D  S  S  R  R  N  Y  H  G  F  T  I  M  K  *  K  V  E  V  I  C  F  H  G  L  K  E  W  E  I  K  L  *  R  H  F  Y  L  E  S  L  L  L  C  K  S  Y  K  G  L  L  V  L  D  S  M  I  I  F  V  I  E  Q  I  *  I  C  S  *  *  L  N  S  T  *  V  D  F  S  Y  V  A  R  T  L  K  T  Y  R  P  S  K  T  M  N  F  *  R  V  R  A  T  E  V  L  E  T  T  L  K  K  N  N  *  I  :  K  M  M  V  *  Y  W  I  H  D  S  C  H  *  P  N  L  K  I  C  *  *  F  S  H  F  </first_frame>
            <second_frame>  Y  F  G  *  D  F  L  L  F  L  F  S  F  Q  F  F  I  F  F  G  N  D  D  K  N  D  S  N  F  W  Y  C  D  I  G  T  N  L  *  G  N  Y  S  T  I  T  K  D  L  W  F  T  K  W  T  F  N  Y  S  T  K  N  *  A  F  *  W  E  I  F  G  L  *  R  K  W  C  S  *  R  *  S  K  T  Q  I  C  I  H  S  W  L  *  L  C  *  T  *  C  C  F  A  H  N  Y  F  S   : *  G  Y  A  K  F  G  N  L  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  T  K  N  T  K  D  L  S  S  *  Y  *  R  I  S  *  S  I  G  I  G  T  *  I  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  N  S  S  N  T  S  D  *  L  L  V  G  *  F  P  S  K  L  D  *  T  S  V  L  R  T  A  R  A  G  S  M  D  V  A  D  C  T  L  L  T  M  A  D  L  L  V  E  H  S  K  I  V  S  F  F  Q  R  C  N  V  Q  *  G  Y  S  V  R  A  R  Q  S  S  N  A  Y  L  *  F  V  S  E  *  I  S   : G  L  G  K  T  A  R  G  V  R  V  H  P  S  R  H  N  D  R  V  R  D  M  G  V  *  S  D  G  T  R  K  S  I  P  *  R  G  R  V  R  S  H  L  A  R  R  *  R  R  A  C  T  S  H  S  T  T  I  H  R  E  E  T  T  M  D  S  L  S  *  N  E  R  W  R  S  Y  V  S  M  G  *  R  N  G  R  *  S  Y  E  D  I  F  T  W  R  A  F  C  Y  V  K  A  I  K  G  F  *  Y  W  I  Q  *  S  F  L  S  L  N  K  F  E  Y  V  V  N  N  *  I  L  L  K  L  I  L  A  M  S  L  E  L  L  K  L  I  V  L  L  K  L  *  I  F  K  E  F  E  Q  R  R  F  S  K  Q  P  *  R  K  I  I  R  L :   R  *  W  C  N  I  G  F  M  T  L  V  I  D  Q  T  *  K  F  V  D  N  S  V  T  L </second_frame>
            <third_frame>   I  L  V  K  I  F  F  F  S  C  F  L  S  N  F  L  F  F  L  G  M  T  I  K  M  I  A  I  F  G  I  V  I  L  A  L  I  Y  K  A  I  I  P  P  S  P  K  I  C  G  S  P  N  G  P  L  I  T  A  P  R  I  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  E  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  I  S  P  :  E  V  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  Q  R  T  P  K  T  L  A  L  D  I  E  E  L  V  D  Q  L  E  L  G  P  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A  I  L  L  T  P  V  T  N  Y  W  W  G  S  F  P  A  N  L  T  K  Q  A  Y  Y  E  Q  L  V  Q  D  Q  W  T  L  R  I  A  H  Y  L  P  W  L  T  Y  W  W  N  T  Q  R  L  F  P  S  S  S  V  A  T  F  S  E  D  I  L  F  E  Q  D  R  V  L  M  P  I  F  D  S  Y  Q  S  K  Y  R  :  D  L  V  R  Q  Q  G  E  Y  E  S  I  H  R  D  I  M  I  G  F  G  T  W  E  F  D  P  M  E  L  E  N  P  F  P  N  G  E  G  S  V  H  I  W  Q  G  D  E  D  G  H  V  P  V  I  L  Q  R  F  I  A  K  K  L  P  W  I  H  Y  H  E  M  K  G  G  G  H  M  F  P  W  A  E  G  M  G  D  K  V  M  K  T  F  L  L  G  E  P  F  V  M  *  K  L  *  R  A  F  S  I  G  F  N  D  H  F  C  H  *  T  N  L  N  M  *  L  I  I  K  F  Y  L  S  *  F  *  L  C  R  S  N  S  *  N  L  S  S  F  *  N  Y  E  F  L  K  S  S  S  N  G  G  S  R  N  N  L  E  E  K  *  L  D   : *  D  D  G  V  I  L  D  S  *  L  L  S  L  T  K  L  K  N  L  L  I  I  Q  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31633" stop="31953"/>
                    <exon start="32658" stop="32869"/>
                    <exon start="33134" stop="33401"/>
                    <exon start="33755" stop="34060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVKIFFFSCFLSNFLFFLGMTIKMIAIFGIVILALIYKAIIPPSPKICGSPNGPLITAPRIKLSDGRYLAYKENGVPRDEAKHKFVFIHGFDCVRHDVALLTTISPEVMQSLGIYIVSIDRPGYGESDPHPQRTPKTLALDIEELVDQLELGPKFYVIGFSMGGQAVWGLLKYIPHRLAGAILLTPVTNYWWGSFPANLTKQAYYEQLVQDQWTLRIAHYLPWLTYWWNTQRLFPSSSVATFSEDILFEQDRVLMPIFDSYQSKYRDLVRQQGEYESIHRDIMIGFGTWEFDPMELENPFPNGEGSVHIWQGDEDGHVPVILQRFIAKKLPWIHYHEMKGGGHMFPWAEGMGDKVMKTFLLGEPFVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31686" e_stop="31957"/>
            <exon e_start="32658" e_stop="32869"/>
            <exon e_start="33134" e_stop="33146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.735" acc_prob="0.998" e_score="0.908"/>
          <exon-intron don_prob="0.558" acc_prob="0.990" e_score="0.943"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="31686" e_stop="31957" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.735" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31958" i_stop="32657" i_length="700"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="32658" e_stop="32869" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.558" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32870" i_stop="33133" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33134" e_stop="33146" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31686" stop="31957"/>
              <exon start="32658" stop="32869"/>
              <exon start="33134" stop="33146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGAATGACGATAAAAATGATAGCAATTTTTGGTATTGTGATATTGGCACTAATTTATAAGGCAATTATTCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTTTAATTACAGCACCAAGAATTAAGCTTTCTGATGGGAGATATTTGGCTTATAAAGAAAATGGTGTTCCTAGAGATGAAGCAAAACACAAATTTGTATTCATTCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCTCACAACTATTTCTCCTGTAT : GAGGTTATGCAAAGTTTGGGAATCTATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGATCCTCATCCACAAAGAACACCAAAGACCTTAGCTCTTGATATTGAAGAATTAGTTGATCAATTGGAATTGGGACCTAAATTTTATGTTATAGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCTCAAGTATATTCCTCACAG : ATTGGCTGGAGCA</gDNA_template>
            <first_frame> F  G  N  D  D  K  N  D  S  N  F  W  Y  C  D  I  G  T  N  L  *  G  N  Y  S  T  I  T  K  D  L  W  F  T  K  W  T  F  N  Y  S  T  K  N  *  A  F  *  W  E  I  F  G  L  *  R  K  W  C  S  *  R  *  S  K  T  Q  I  C  I  H  S  W  L  *  L  C  *  T  *  C  C  F  A  H  N  Y  F  S  C  M :   R  L  C  K  V  W  E  S  I  L  C  Q  L  I  D  L  V  M  V  K  V  I  L  I  H  K  E  H  Q  R  P  *  L  L  I  L  K  N  *  L  I  N  W  N  W  D  L  N  F  M  L  *  D  F  L  W  V  D  K  L  F  G  A  F  S  S  I  F  L  T   : D  W  L  E   </first_frame>
            <second_frame>  L  G  M  T  I  K  M  I  A  I  F  G  I  V  I  L  A  L  I  Y  K  A  I  I  P  P  S  P  K  I  C  G  S  P  N  G  P  L  I  T  A  P  R  I  K  L  S  D  G  R  Y  L  A  Y  K  E  N  G  V  P  R  D  E  A  K  H  K  F  V  F  I  H  G  F  D  C  V  R  H  D  V  A  L  L  T  T  I  S  P  V   : *  G  Y  A  K  F  G  N  L  Y  C  V  N  *  *  T  W  L  W  *  K  *  S  S  S  T  K  N  T  K  D  L  S  S  *  Y  *  R  I  S  *  S  I  G  I  G  T  *  I  L  C  Y  R  I  F  Y  G  W  T  S  C  L  G  P  S  Q  V  Y  S  S  Q  :  I  G  W  S  </second_frame>
            <third_frame>   W  E  *  R  *  K  *  *  Q  F  L  V  L  *  Y  W  H  *  F  I  R  Q  L  F  H  H  H  Q  R  F  V  V  H  Q  M  D  L  *  L  Q  H  Q  E  L  S  F  L  M  G  D  I  W  L  I  K  K  M  V  F  L  E  M  K  Q  N  T  N  L  Y  S  F  M  A  L  I  V  L  D  M  M  L  L  C  S  Q  L  F  L  L  Y  :  E  V  M  Q  S  L  G  I  Y  I  V  S  I  D  R  P  G  Y  G  E  S  D  P  H  P  Q  R  T  P  K  T  L  A  L  D  I  E  E  L  V  D  Q  L  E  L  G  P  K  F  Y  V  I  G  F  S  M  G  G  Q  A  V  W  G  L  L  K  Y  I  P  H  R :   L  A  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0038P23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31802" stop="31957"/>
                    <exon start="32658" stop="32869"/>
                    <exon start="33134" stop="33146"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQHQELSFLMGDIWLIKKMVFLEMKQNTNLYSFMALIVLDMMLLCSQLFLLYEVMQSLGIYIVSIDRPGYGESDPHPQRTPKTLALDIEELVDQLELGPKFYVIGFSMGGQAVWGLLKYIPHRLAGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 18768 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 1876 bytes was the average size of a spliced alignment
$ 11008 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2201 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:24:28
-->
