<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 11:23:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341704" ref_strand="+" ref_description="SGN-E341704 [cTOF-9-G24]">
      <seq>tctctctctctgttaccaacatttttcaatagccattaatacagagctctcataaacaaaatttaaaaaaatatttgctttttttttttgctcccatttcttttcttcaaacacaaaattaaacaaccccatttccttttttctgatttttttgttgcaaaattcaatttttttctacattttctgagaaaaaaaattatttaagccataaatttagtggtgagttttaagctatttgtctgtcttctctgacattccaataggataaaaaaaatctcaccttttttctgcaattttttagaaaaaaaaacacactttttcaagaatcccctgttttcacccccaccccaccattttttttttcattttttgaagaaaaaaaagaatcttttttgctttatagcaaaattttgtggtgggtttgagctattttctgaatttttcacattttcaagaatcccctgttttttttgttctttttttttgtataatggaggggttatcaggaacaaatattgtttataatacattttatggaacaagagatgatataacagaacattttggtataatgtggggacaaatcaaagctccattgattgttcctctttaaggatttcagtttttttatgtcttggtatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="551" stop="1796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="851" g_stop="1496" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E341704" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="851" e_stop="1496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTGTTACCAACATTTTTCAATAGCCATTAATACAGAGCTCTCATAAACAAAATTTAAAAAAATATTTGCTTTTTTTTTTTGCTCCCATTTCTTTTCTTCAAACACAAAATTAAACAACCCCATTTCCTTTTTTCTGATTTTTTTGTTGCAAAATTCAATTTTTTTCTACATTTTCTGAGAAAAAAAATTATTTAAGCCATAAATTTAGTGGTGAGTTTTAAGCTATTTGTCTGTCTTCTCTGACATTCCAATAGGATAAAAAAAATCTCACCTTTTTTCTGCAATTTTTTAGAAAAAAAAACACACTTTTTCAAGAATCCCCTGTTTTCACCCCCACCCCACCATTTTTTTTTTCATTTTTTGAAGAAAAAAAAGAATCTTTTTTGCTTTATAGCAAAATTTTGTGGTGGGTTTGAGCTATTTTCTGAATTTTTCACATTTTCAAGAATCCCCTGTTTTTTTTGTTCTTTTTTTTTGTATAATGGAGGGGTTATCAGGAACAAATATTGTTTATAATACATTTTATGAAACAAGAGATGATATAACAGAACAATTTGGTATAATGTGGGGACAAATCAAAGCTCCATTGATTGTTCCTCTTTTAAGGATTTCAGTTTTTTTATGTCTTGTTATGTCT</genome_strand>
        <mrna_strand>TCTCTCTCTCTGTTACCAACATTTTTCAATAGCCATTAATACAGAGCTCTCATAAACAAAATTTAAAAAAATATTTGCTTTTTTTTTTTGCTCCCATTTCTTTTCTTCAAACACAAAATTAAACAACCCCATTTCCTTTTTTCTGATTTTTTTGTTGCAAAATTCAATTTTTTTCTACATTTTCTGAGAAAAAAAATTATTTAAGCCATAAATTTAGTGGTGAGTTTTAAGCTATTTGTCTGTCTTCTCTGACATTCCAATAGGATAAAAAAAATCTCACCTTTTTTCTGCAATTTTTTAGAAAAAAAAACACACTTTTTCAAGAATCCCCTGTTTTCACCCCCACCCCACCATTTTTTTTTTCATTTTTTGAAGAAAAAAAAGAATCTTTTTTGCTTTATAGCAAAATTTTGTGGTGGGTTTGAGCTATTTTCTGAATTTTTCACATTTTCAAGAATCCCCTGTTTTTTTTGTTCTTTTTTTTTGTATAATGGAGGGGTTATCAGGAACAAATATTGTTTATAATACATTTTATGGAACAAGAGATGATATAACAGAACATTTTGGTATAATGTGGGGACAAATCAAAGCTCCATTGATTGTTCCTC-TTTAAGGATTTCAGTTTTTTTATGTCTTGGTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549289" ref_strand="+" ref_description="SGN-E549289 [TUS-69-A18]">
      <seq>agaatatggtggaaattgaatgccaaagatgggcaaacaaagggataaatataaaatatgaagtgagagacaataggaatggatacaaagcaggtgctttgaaagaaggattgaaacattcttatgtgaaacaatgtgattttgttgctatttttgatgctgattttcaacctgaacctgattttctatggcaaacaattccatttctagttcacaatcatgaactttcacttgttcaagctaggtggaaatatgttaatgctgatgaatgtctaatgacaagaatgcaagaaatgtcattggattatcatttctctgtggagcaagaagttggctcttcaacacatgcttttttcggatttaatggcactgcaggtgtttggagaatcgcggcgatagatgaggctggaggttggaaggacaggacaacggttgaggatatggacctcgctgtccgtgctagtctcaagggatggaaattcttgttccttggttctgtcaaggtaaaaaacgaattaccaagtacattgaaggcctatcgttatcaacaacatcgttggtcctgtggcccagccaatctcttcaggaaaatgtgtatggagatcataagaaacaagaaagtgtctttgtggaaaaaagttcatgtgatttacagcttcttcttcgttaggaaggtcgtagctcatattgttactttcgtattctatgttgtggtattacccgccactgtattagtacctgaaagtgaggttccgaagtggggagctgtttacattcctgccatcattacgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="2527" stop="6851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2825" g_stop="3079" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3080" i_stop="5278" i_length="2199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5279" g_stop="5389" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="366" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5390" i_stop="5671" i_length="282">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5672" g_stop="5808" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="503" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5809" i_stop="6166" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6167" g_stop="6280" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="617" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6281" i_stop="6372" i_length="92">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.599" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6373" g_stop="6551" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="796" r_length="179" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E549289" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2825" e_stop="3079"/>
          <exon e_start="5279" e_stop="5389"/>
          <exon e_start="5672" e_stop="5808"/>
          <exon e_start="6167" e_stop="6280"/>
          <exon e_start="6373" e_stop="6551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGGTGGAAATTGAATGCCAAAAATGGGCAAAAAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGGTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATGGTAAGTTTTACTTACTTTTTTTTAACTTTCCTCATATAGTAGTATTACTAATTACTTTTGATAAAGATGGTGTCCGAACCGTCTTGCACGTATTTCGAGTAGTACAAATGGTTATTTAGTTTAGCTGTATTCTAAACTCATAAAGTTTGAATCTTAATTTCATTTTTAGTAGAATACTCTGAATTTATAAAATTTAAATCTTGATCACATCTTTAGTGGTAGTCTGAACCAATAAAGTTTGAATTCTAATTCAGCCTTTAATAAAACAATGACATTTTGAATCGTTGAAGTTTTAATGTTGATTTCGCCTCTGGGTGGAACTTGGGGTTTTAGGATAAGAAGATGGCTAAATTAAGGGAATCTATTAGAATTTCATAGCACATAAAGCGCGTATTTAGTTCGTTGTTTTTATACGAGAGATTTTGTTCTAATAATTTTTTTCATAAGGTCGCTCCTTTTTCTTTATATCAAGAGGCGATAATTTAGTCTACCAAAACTTAGTTCGTGGACGAAGTTATCTAGCAATTTGTAATTTACATTAGTTTATCCAAAAAAAAGCCCTAAATAAGGGCATTCACTAGAATTTCGTAGCGCATCGAGCAAGTAGGTATGTAGGAGATATCTTTTTGACATATACGATAATTCTGTTTACCAAAGGTTAATATAAAATCAGAAGAAGTCTTCTATCATTTTATGATTTTCAAACTTTTTAATTATAATTACTAGGTAATAACCATTTATTTTTTACCCTTCCATAATATATTTATATTATTTCTCTACTAAATAATAACTCATCAACACTGTCGGTGACTTTTACACATTACCAATATTTTTGTGTGCACATAATAATGACCAAACTTAGGTACAATCTTTTGTAGGCCAGTATTTTTTAGGCCACATATAGTATTGTGGTGGCTCATGAACTTTGGCCCTAGTTCTGAATTGTCAATTCAAATGCACTAATTTTTTTTGGTCAATAAAATGTTATGGTAGATCGATAAGTATTTTTTTATTTTGAACTAGAAATTTCAGGTTTAAATTTAGAATATAAAATCGTTTTTAATAGAAAATCGTTACCCCCTTTTAAGTGGGATTCTTAAACATAAATCCTGATTAATCAAAGTTGATACCAAACCCCATATGGAATTAAAAAGAAAATACTCATTATTAGTAATAATTTTAATGTTTGATAAAAAAAAAAAAATCTATGTTATGCTAAAAGTTGTTTTGTTTTGATGCATGCTAAAAAGCTGAAAAGAGGAGTTGATTAAAGTGAAAAAAAAAAGTCTTTATGGTTTCGTAAGAAGCACTTAATATTACAAGTATTTTTTATTACTAAGACAATAAATACCCCTATATTGCTTTTCTTTTTCCTAGATTTGGTAAGTATGTGTCGAATCCAACATGTATCCTTCAATATTTTTAATAATTCGAGAACATAACTTATCACCTATATTGATTTTGATTATCTAAAAATGTTGACGCGTTCATGTTTGATATTTACTAAGTACATTATTTTTTAAGAATTCGATAACAATATTCACCTATATTGCTTTTGCATTGTGAATGGAAGCTTTTTTTTGTACTTAAAAAAAAGTGAAGAAAATCTTTAATACATTCTCAAAGGTATGGTCATTTTTGGAGTTATTGATAATGACAAGGGTATTTTTGTCTTTAAATTCACAAAGTAACCAACAATTGCATGTGCTATAAAAATTGTGGACCTAAAAGAACATTCTTTTTTACTAGCCAACACGATTTTTGGTGTCTTTGAGAATTATTTTTTTAATTTTTATTTTAATAGGTCAAAATTAAATTGTTAAATAAATAAATATAACTCAAACTTTTGAAAAAAAAAATGCCCGTTCGAAAAATATTGATTTTAATTTTCTTCTTTGTCTTTTTAATTTGTTGATATTTTTCCTTCTCTTACCTTTTTTGATACGTTATATTCGAGCTGAAGGTCTATTAAAAACAATTTTTTACCTGCATAAGATAGGCGGATAAGGTCTTAGTACACATTACCCTCTCAGTCATTGGGCTAGTGAAGGGTGGTCAGATACACACCTTGTCTAAAAAATATGTTTTGTAGAGAAGTTCCGTTAGCTATTATGAGTGTATATTTATACACCTGATATGTTATTGTTATTGTTGTGAAATAATTTTATTTTATTTTTTTTTGGTTGGTGATTTTTATAGTTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTAGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATGGTATTAATTCTCCGTATTATATATAAATATTTGACGATGAATCCAGTTACTATTGTGTTAGTAATTAACTTGAAGTCGCTATAGGAACTTGTAGCTTCAAATTCTGAATCCGCTCTTCACTTGAGTACTTAACTTTAGCTCCATTGAAAGTGACAAGTTAGTAAGCAACATGTTAGTTGAAACAACAACTAGTGGTCCAAGAAAAATGTTGAACTCTATATGTTCCGTGTGAATTCGTTGTGGTCCAACGAAGAATCTAAAATGTGAATGTTGTGTCTACAGGCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTTGGTTCTGTCAAGGTACATATACTCTCTCCTCTATCACATTTCATATACGTTGTCTCGTAATGTAAGATAAATAAACACTATAATGTACTATATGTACGAAATATTATCTGTCTTTTAAGATTTCTAAACATATTCCGCTTCTGGCATTTCCTATCCGTTGTCATGAAATGATAGAGAAATGGATGCTACAACATACTATCGTTTTGTCCATATTATCTGTCTTTTAAGGTTTTAGCATGCCCTTTAAGAAAGACGTTTATTAGCCTTAATATGGACTTGGGAGTCGTCGTGGAGATCATATTGTCATGTATACAAGTCGAGAAAATGGATAGAGTAAGTTATGTCACGTGACCGTTGTTCAATCATATAGGTAAAAAACGAATTACCAAGTACGTTGAAGGCCTATCGTTATCAACAACATCGTTGGTCCTGTGGCCCAGCCAATCTCTTCAGGAAAATGTGTATGGAGATCATAAGAAACAAGGTAATACAAAAATCGCCATTTCCTAAAGACTGTTTAGTACTCAATCTAAGTCCCCGCTGAACTTCTTTTTATCGGCTTTGTTTGCTTTGCAGAAAGTATCTTTGTGGAAAAAAGTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGGTCGTAGCTCATATTGTTACTTTCGTATTCTATGTTGTGGTATTACCCGCCACTGTATTAGTACCTGAAGTTGAGGTTCCGAAGTGGGGAGCTGTTTACATTCCTGCCATCATTACGCTTCT</genome_strand>
        <mrna_strand>AGAATATGGTGGAAATTGAATGCCAAAGATGGGCAAACAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGCTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTGGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATG..........................................................................................................................................................................................................................................................................................GCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTTGGTTCTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACGAATTACCAAGTACATTGAAGGCCTATCGTTATCAACAACATCGTTGGTCCTGTGGCCCAGCCAATCTCTTCAGGAAAATGTGTATGGAGATCATAAGAAACAAG............................................................................................AAAGTGTCTTTGTGGAAAAAAGTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGGTCGTAGCTCATATTGTTACTTTCGTATTCTATGTTGTGGTATTACCCGCCACTGTATTAGTACCTGAAAGTGAGGTTCCGAAGTGGGGAGCTGTTTACATTCCTGCCATCATTACGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359158" ref_strand="+" ref_description="SGN-E359158 [cLHT-11-I11]">
      <seq>gaatatggtggaaattgaatgccaaagatgggcaaacaaagggataaatataaaatatgaagtgagagacaataggaatggatacaaagcaggtgctttgaaagaaggattgaaacattcttatgtgaaacaatgtgattttgttgctatttttgatgctgattttcaacctgaacctgattttctatggcaaacaattccatttctagttcacaatcatgaactttcacttgttcaagctaggtggaaatatgttaatgctgatgaatgtctaatgacaagaatgcaagaaatgtcattggattatcatttctctgtggagcaagaagttggctcttcaacacatgcttttttcggatttaatggcactgcaggtgtttggagaatcgcggcgatagatgaggctggaggttggaaggacaggacaacggttgaggatatggacctcgctgtccgtgctagtctcaagggatggaaattcttgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="2527" stop="6096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2826" g_stop="3079" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3080" i_stop="5278" i_length="2199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5279" g_stop="5389" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="365" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5390" i_stop="5671" i_length="282">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5672" g_stop="5796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="490" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E359158" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2826" e_stop="3079"/>
          <exon e_start="5279" e_stop="5389"/>
          <exon e_start="5672" e_stop="5796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGGTGGAAATTGAATGCCAAAAATGGGCAAAAAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGGTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATGGTAAGTTTTACTTACTTTTTTTTAACTTTCCTCATATAGTAGTATTACTAATTACTTTTGATAAAGATGGTGTCCGAACCGTCTTGCACGTATTTCGAGTAGTACAAATGGTTATTTAGTTTAGCTGTATTCTAAACTCATAAAGTTTGAATCTTAATTTCATTTTTAGTAGAATACTCTGAATTTATAAAATTTAAATCTTGATCACATCTTTAGTGGTAGTCTGAACCAATAAAGTTTGAATTCTAATTCAGCCTTTAATAAAACAATGACATTTTGAATCGTTGAAGTTTTAATGTTGATTTCGCCTCTGGGTGGAACTTGGGGTTTTAGGATAAGAAGATGGCTAAATTAAGGGAATCTATTAGAATTTCATAGCACATAAAGCGCGTATTTAGTTCGTTGTTTTTATACGAGAGATTTTGTTCTAATAATTTTTTTCATAAGGTCGCTCCTTTTTCTTTATATCAAGAGGCGATAATTTAGTCTACCAAAACTTAGTTCGTGGACGAAGTTATCTAGCAATTTGTAATTTACATTAGTTTATCCAAAAAAAAGCCCTAAATAAGGGCATTCACTAGAATTTCGTAGCGCATCGAGCAAGTAGGTATGTAGGAGATATCTTTTTGACATATACGATAATTCTGTTTACCAAAGGTTAATATAAAATCAGAAGAAGTCTTCTATCATTTTATGATTTTCAAACTTTTTAATTATAATTACTAGGTAATAACCATTTATTTTTTACCCTTCCATAATATATTTATATTATTTCTCTACTAAATAATAACTCATCAACACTGTCGGTGACTTTTACACATTACCAATATTTTTGTGTGCACATAATAATGACCAAACTTAGGTACAATCTTTTGTAGGCCAGTATTTTTTAGGCCACATATAGTATTGTGGTGGCTCATGAACTTTGGCCCTAGTTCTGAATTGTCAATTCAAATGCACTAATTTTTTTTGGTCAATAAAATGTTATGGTAGATCGATAAGTATTTTTTTATTTTGAACTAGAAATTTCAGGTTTAAATTTAGAATATAAAATCGTTTTTAATAGAAAATCGTTACCCCCTTTTAAGTGGGATTCTTAAACATAAATCCTGATTAATCAAAGTTGATACCAAACCCCATATGGAATTAAAAAGAAAATACTCATTATTAGTAATAATTTTAATGTTTGATAAAAAAAAAAAAATCTATGTTATGCTAAAAGTTGTTTTGTTTTGATGCATGCTAAAAAGCTGAAAAGAGGAGTTGATTAAAGTGAAAAAAAAAAGTCTTTATGGTTTCGTAAGAAGCACTTAATATTACAAGTATTTTTTATTACTAAGACAATAAATACCCCTATATTGCTTTTCTTTTTCCTAGATTTGGTAAGTATGTGTCGAATCCAACATGTATCCTTCAATATTTTTAATAATTCGAGAACATAACTTATCACCTATATTGATTTTGATTATCTAAAAATGTTGACGCGTTCATGTTTGATATTTACTAAGTACATTATTTTTTAAGAATTCGATAACAATATTCACCTATATTGCTTTTGCATTGTGAATGGAAGCTTTTTTTTGTACTTAAAAAAAAGTGAAGAAAATCTTTAATACATTCTCAAAGGTATGGTCATTTTTGGAGTTATTGATAATGACAAGGGTATTTTTGTCTTTAAATTCACAAAGTAACCAACAATTGCATGTGCTATAAAAATTGTGGACCTAAAAGAACATTCTTTTTTACTAGCCAACACGATTTTTGGTGTCTTTGAGAATTATTTTTTTAATTTTTATTTTAATAGGTCAAAATTAAATTGTTAAATAAATAAATATAACTCAAACTTTTGAAAAAAAAAATGCCCGTTCGAAAAATATTGATTTTAATTTTCTTCTTTGTCTTTTTAATTTGTTGATATTTTTCCTTCTCTTACCTTTTTTGATACGTTATATTCGAGCTGAAGGTCTATTAAAAACAATTTTTTACCTGCATAAGATAGGCGGATAAGGTCTTAGTACACATTACCCTCTCAGTCATTGGGCTAGTGAAGGGTGGTCAGATACACACCTTGTCTAAAAAATATGTTTTGTAGAGAAGTTCCGTTAGCTATTATGAGTGTATATTTATACACCTGATATGTTATTGTTATTGTTGTGAAATAATTTTATTTTATTTTTTTTTGGTTGGTGATTTTTATAGTTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTAGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATGGTATTAATTCTCCGTATTATATATAAATATTTGACGATGAATCCAGTTACTATTGTGTTAGTAATTAACTTGAAGTCGCTATAGGAACTTGTAGCTTCAAATTCTGAATCCGCTCTTCACTTGAGTACTTAACTTTAGCTCCATTGAAAGTGACAAGTTAGTAAGCAACATGTTAGTTGAAACAACAACTAGTGGTCCAAGAAAAATGTTGAACTCTATATGTTCCGTGTGAATTCGTTGTGGTCCAACGAAGAATCTAAAATGTGAATGTTGTGTCTACAGGCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTT</genome_strand>
        <mrna_strand>GAATATGGTGGAAATTGAATGCCAAAGATGGGCAAACAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGCTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTGGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATG..........................................................................................................................................................................................................................................................................................GCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549297" ref_strand="+" ref_description="SGN-E549297 [TUS-69-B22]">
      <seq>ccccgggctgcaggatcccaaaaagaggagaatatggtggaaattgaatgccaaagatgggcaaacaaagggataaatataaaatatgaagtgagagacaataggaatggatacaaagcaggtgctttgaaagaaggattgaaacattcttatgtgaaacaatgtgattttgttgctatttttgatgctgattttcaacctgaacctgattttctatggcaaacaattccatttctagttcacaatcatgaactttcacttgttcaagctaggtggttttttgttaatgctgatgaatgtctaatgacaagaatgcaagaaatgtcattggattatcatttctctgtggagcaagaagttggctcttcaacacatgcttttttcggatttaatggcactgcaggtgtttggagaatcgcggcgatagatgaggctggaggttggaaggacaggacaacggttgaggatatggacctcgctgtccgtgctagtctcaagggatggaaattcttgttccttggttctgtcaaggtaaaaaacgaattaccaagtacattgaaggcctatcgttatcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="2523" stop="6514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2827" g_stop="3079" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="283" r_length="253" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3080" i_stop="5278" i_length="2199">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5279" g_stop="5389" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="394" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5390" i_stop="5671" i_length="282">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5672" g_stop="5808" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="531" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5809" i_stop="6166" i_length="358">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6167" g_stop="6214" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="579" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E549297" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2827" e_stop="3079"/>
          <exon e_start="5279" e_stop="5389"/>
          <exon e_start="5672" e_stop="5808"/>
          <exon e_start="6167" e_stop="6214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTGGAAATTGAATGCCAAAAATGGGCAAAAAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGGTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATGGTAAGTTTTACTTACTTTTTTTTAACTTTCCTCATATAGTAGTATTACTAATTACTTTTGATAAAGATGGTGTCCGAACCGTCTTGCACGTATTTCGAGTAGTACAAATGGTTATTTAGTTTAGCTGTATTCTAAACTCATAAAGTTTGAATCTTAATTTCATTTTTAGTAGAATACTCTGAATTTATAAAATTTAAATCTTGATCACATCTTTAGTGGTAGTCTGAACCAATAAAGTTTGAATTCTAATTCAGCCTTTAATAAAACAATGACATTTTGAATCGTTGAAGTTTTAATGTTGATTTCGCCTCTGGGTGGAACTTGGGGTTTTAGGATAAGAAGATGGCTAAATTAAGGGAATCTATTAGAATTTCATAGCACATAAAGCGCGTATTTAGTTCGTTGTTTTTATACGAGAGATTTTGTTCTAATAATTTTTTTCATAAGGTCGCTCCTTTTTCTTTATATCAAGAGGCGATAATTTAGTCTACCAAAACTTAGTTCGTGGACGAAGTTATCTAGCAATTTGTAATTTACATTAGTTTATCCAAAAAAAAGCCCTAAATAAGGGCATTCACTAGAATTTCGTAGCGCATCGAGCAAGTAGGTATGTAGGAGATATCTTTTTGACATATACGATAATTCTGTTTACCAAAGGTTAATATAAAATCAGAAGAAGTCTTCTATCATTTTATGATTTTCAAACTTTTTAATTATAATTACTAGGTAATAACCATTTATTTTTTACCCTTCCATAATATATTTATATTATTTCTCTACTAAATAATAACTCATCAACACTGTCGGTGACTTTTACACATTACCAATATTTTTGTGTGCACATAATAATGACCAAACTTAGGTACAATCTTTTGTAGGCCAGTATTTTTTAGGCCACATATAGTATTGTGGTGGCTCATGAACTTTGGCCCTAGTTCTGAATTGTCAATTCAAATGCACTAATTTTTTTTGGTCAATAAAATGTTATGGTAGATCGATAAGTATTTTTTTATTTTGAACTAGAAATTTCAGGTTTAAATTTAGAATATAAAATCGTTTTTAATAGAAAATCGTTACCCCCTTTTAAGTGGGATTCTTAAACATAAATCCTGATTAATCAAAGTTGATACCAAACCCCATATGGAATTAAAAAGAAAATACTCATTATTAGTAATAATTTTAATGTTTGATAAAAAAAAAAAAATCTATGTTATGCTAAAAGTTGTTTTGTTTTGATGCATGCTAAAAAGCTGAAAAGAGGAGTTGATTAAAGTGAAAAAAAAAAGTCTTTATGGTTTCGTAAGAAGCACTTAATATTACAAGTATTTTTTATTACTAAGACAATAAATACCCCTATATTGCTTTTCTTTTTCCTAGATTTGGTAAGTATGTGTCGAATCCAACATGTATCCTTCAATATTTTTAATAATTCGAGAACATAACTTATCACCTATATTGATTTTGATTATCTAAAAATGTTGACGCGTTCATGTTTGATATTTACTAAGTACATTATTTTTTAAGAATTCGATAACAATATTCACCTATATTGCTTTTGCATTGTGAATGGAAGCTTTTTTTTGTACTTAAAAAAAAGTGAAGAAAATCTTTAATACATTCTCAAAGGTATGGTCATTTTTGGAGTTATTGATAATGACAAGGGTATTTTTGTCTTTAAATTCACAAAGTAACCAACAATTGCATGTGCTATAAAAATTGTGGACCTAAAAGAACATTCTTTTTTACTAGCCAACACGATTTTTGGTGTCTTTGAGAATTATTTTTTTAATTTTTATTTTAATAGGTCAAAATTAAATTGTTAAATAAATAAATATAACTCAAACTTTTGAAAAAAAAAATGCCCGTTCGAAAAATATTGATTTTAATTTTCTTCTTTGTCTTTTTAATTTGTTGATATTTTTCCTTCTCTTACCTTTTTTGATACGTTATATTCGAGCTGAAGGTCTATTAAAAACAATTTTTTACCTGCATAAGATAGGCGGATAAGGTCTTAGTACACATTACCCTCTCAGTCATTGGGCTAGTGAAGGGTGGTCAGATACACACCTTGTCTAAAAAATATGTTTTGTAGAGAAGTTCCGTTAGCTATTATGAGTGTATATTTATACACCTGATATGTTATTGTTATTGTTGTGAAATAATTTTATTTTATTTTTTTTTGGTTGGTGATTTTTATAGTTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTAGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATGGTATTAATTCTCCGTATTATATATAAATATTTGACGATGAATCCAGTTACTATTGTGTTAGTAATTAACTTGAAGTCGCTATAGGAACTTGTAGCTTCAAATTCTGAATCCGCTCTTCACTTGAGTACTTAACTTTAGCTCCATTGAAAGTGACAAGTTAGTAAGCAACATGTTAGTTGAAACAACAACTAGTGGTCCAAGAAAAATGTTGAACTCTATATGTTCCGTGTGAATTCGTTGTGGTCCAACGAAGAATCTAAAATGTGAATGTTGTGTCTACAGGCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTTGGTTCTGTCAAGGTACATATACTCTCTCCTCTATCACATTTCATATACGTTGTCTCGTAATGTAAGATAAATAAACACTATAATGTACTATATGTACGAAATATTATCTGTCTTTTAAGATTTCTAAACATATTCCGCTTCTGGCATTTCCTATCCGTTGTCATGAAATGATAGAGAAATGGATGCTACAACATACTATCGTTTTGTCCATATTATCTGTCTTTTAAGGTTTTAGCATGCCCTTTAAGAAAGACGTTTATTAGCCTTAATATGGACTTGGGAGTCGTCGTGGAGATCATATTGTCATGTATACAAGTCGAGAAAATGGATAGAGTAAGTTATGTCACGTGACCGTTGTTCAATCATATAGGTAAAAAACGAATTACCAAGTACGTTGAAGGCCTATCGTTATCAACAA</genome_strand>
        <mrna_strand>AATATGGTGGAAATTGAATGCCAAAGATGGGCAAACAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGCTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGTTTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTGGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATG..........................................................................................................................................................................................................................................................................................GCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTTGGTTCTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................GTAAAAAACGAATTACCAAGTACATTGAAGGCCTATCGTTATCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340759" ref_strand="+" ref_description="SGN-E340759 [cTOF-5-O11]">
      <seq>tggggagctgtttacattcctgccatcattacgcttctaaatgctgttggaactccacggtcactccatctgctggtattttggatccttttcgagaatgtaatgtcactccaccgtactaaggccaccttcatcggcttgttggaggcaggacgagtgaatgaatggattgtcacggagaaattaggggacgcgctgaagttaaaatcagctaccaaagcgtttaaaaaacatcgaatgaggctaggtgacaggatccatttgttagagtttgctgctggtgcatacctcttcttctgtggatgttatgacattgcatttggtactaaccactatttcctctacctcttcattcaagcattcgcctttctcatcgttggatttggttacgttggtactttcgtccccaattcataatcaacgctcgtgaaactgatcttatggtatgaatcttcagctttttcgccctgtgctcccctctcagtagcaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="6214" stop="7594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6514" g_stop="6572" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6573" i_stop="6759" i_length="187">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6760" g_stop="6954" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="254" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6955" i_stop="7047" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7048" g_stop="7294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="501" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E340759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6514" e_stop="6572"/>
          <exon e_start="6760" e_stop="6954"/>
          <exon e_start="7048" e_stop="7294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAGCTGTTTACATTCCTGCCATCATTACGCTTCTAAATGCTGTTGGAACTCCACGGTCAGTTCTCCGTATACTTGCATTGCATCTGTCATACTTCGTTTGCTTGATAACGTTGTGGTCCTAACGGCTGAAAGTTTACGTAGATATGTTAGGGGTCATTTGGTTCGTAGGCTAAATTATACCGGGATTATAATTTGTTTGAACTAGAAATGCTGAGCTATTGTTTATGCTGAATCAAAAACAGGTCACTCCATCTGCTGGTATTTTGGATCCTTTTCGAGAATGTAATGTCACTCCACCGTACTAAGGCCACCTTCATCGGCTTGTTGGAGGCAGGACGAGTGAATGAATGGATTGTCACGGAGAAATTAGGGGACGCGCTGAAGTTAAAATCAGCTACCAAAGCGTTTAAAAAACATCGAATGAGGCTAGGTGACAGGTAACATTTCATCGTTACAAATACGAGTTTTCAGCTTTTCGTAGACAATGTACAAGACTAGTAAAGTTTCCCATATCGTTCAATCATCGACAGGATCCATTTGTTAGAGTTTGCTGCTGGTGCATACCTCTTCTTCTGTGGATGTTATGACATTGCATTTGGTACTAACCACTATTTCCTCTACCTCTTCATTCAAGCATTCGCCTTTCTCATCGTTGGATTTGGTTACGTTGGTACTTTCGTCCCCAATTCATAATCAACGCTCGTGAAACTGATCTTATGGTATGAATCTTCAGCTTTTTCGCCCTGTGCTCCCCTCTCAGTAGCACCAAAAAAAAAA</genome_strand>
        <mrna_strand>TGGGGAGCTGTTTACATTCCTGCCATCATTACGCTTCTAAATGCTGTTGGAACTCCACG...........................................................................................................................................................................................GTCACTCCATCTGCTGGTATTTTGGATCCTTTTCGAGAATGTAATGTCACTCCACCGTACTAAGGCCACCTTCATCGGCTTGTTGGAGGCAGGACGAGTGAATGAATGGATTGTCACGGAGAAATTAGGGGACGCGCTGAAGTTAAAATCAGCTACCAAAGCGTTTAAAAAACATCGAATGAGGCTAGGTGACAG.............................................................................................GATCCATTTGTTAGAGTTTGCTGCTGGTGCATACCTCTTCTTCTGTGGATGTTATGACATTGCATTTGGTACTAACCACTATTTCCTCTACCTCTTCATTCAAGCATTCGCCTTTCTCATCGTTGGATTTGGTTACGTTGGTACTTTCGTCCCCAATTCATAATCAACGCTCGTGAAACTGATCTTATGGTATGAATCTTCAGCTTTTTCGCCCTGTGCTCCCCTCTCAGTAGCACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545938" ref_strand="+" ref_description="SGN-E545938 [TUS-69-A18](-)">
      <seq>catcattacgctactaaatgctgttggaactccacggtcactccatctgctggtattttggatccttttcgagaatgtaatgtcactccaccgtactaaggccaccttcatcggcttgttggaggcaggacgggtgaatgaatggattgtcacggagaaattaggggacgcgctgaagttaaaatcagctaccaaagcgtttaaaaaacatcgaatgaggctaggtgacaggatccatttgttagagtttgctgctggtgcatacctcttcttctgtggatgttatgacattgcatttggtactaaccactattttctctacctattcattcaagcattcgcctttctcatcgttggatttggttacgttggtactttcatccccaactcataatcaacgctcgtgaaactgatctcatggtagtagcaccaaaaaaaaaagtgtggcgtttcttgttttggagtgttgtttttgatcattttgtaaagagataaatagttgagtatattctttttaggtcatttcaaacatgaaagtgattcgagccctgagggtcagggctcgaatcgtgttttgttctctttgtgtatattctcagaaatagtcctatggttaaatgcagcatcatatacataggaaggagatgcaaaaaagatatgattttttttttcctattcattttactgagatgtaatttggtttcaaatttcaatgcagagctaatgtttacatttctctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="6237" stop="7916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6537" g_stop="6572" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6573" i_stop="6759" i_length="187">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6760" g_stop="6954" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="231" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6955" i_stop="7047" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7048" g_stop="7249" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="432" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7250" i_stop="7299" i_length="50">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7300" g_stop="7616" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="740" r_length="308" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="741" polyA_stop="755"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E545938" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6537" e_stop="6572"/>
          <exon e_start="6760" e_stop="6954"/>
          <exon e_start="7048" e_stop="7249"/>
          <exon e_start="7300" e_stop="7616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATTACGCTTCTAAATGCTGTTGGAACTCCACGGTCAGTTCTCCGTATACTTGCATTGCATCTGTCATACTTCGTTTGCTTGATAACGTTGTGGTCCTAACGGCTGAAAGTTTACGTAGATATGTTAGGGGTCATTTGGTTCGTAGGCTAAATTATACCGGGATTATAATTTGTTTGAACTAGAAATGCTGAGCTATTGTTTATGCTGAATCAAAAACAGGTCACTCCATCTGCTGGTATTTTGGATCCTTTTCGAGAATGTAATGTCACTCCACCGTACTAAGGCCACCTTCATCGGCTTGTTGGAGGCAGGACGAGTGAATGAATGGATTGTCACGGAGAAATTAGGGGACGCGCTGAAGTTAAAATCAGCTACCAAAGCGTTTAAAAAACATCGAATGAGGCTAGGTGACAGGTAACATTTCATCGTTACAAATACGAGTTTTCAGCTTTTCGTAGACAATGTACAAGACTAGTAAAGTTTCCCATATCGTTCAATCATCGACAGGATCCATTTGTTAGAGTTTGCTGCTGGTGCATACCTCTTCTTCTGTGGATGTTATGACATTGCATTTGGTACTAACCACTATTTCCTCTACCTCTTCATTCAAGCATTCGCCTTTCTCATCGTTGGATTTGGTTACGTTGGTACTTTCGTCCCCAATTCATAATCAACGCTCGTGAAACTGATCTTATGGTATGAATCTTCAGCTTTTTCGCCCTGTGCTCCCCTCTCAGTAGCACCAAAAAAAAAAGTGTGG-CGTTGAA--GCGCCCTTTCTTGTTTTGGGGTGTTGTTTTTTGATCATTTTGTAAAGAGATAAATAGTTTGGTATATTCTTTTTAGGTCATTTCAAACATGAAAGTGATTCGAGCCCTGAGGGTCAGGGTCAGGGTCAGGGCTCGAATCGTGTTTGTTCTCTTTGTGTATATTCTCAGAAAGAGTCCTATGGTTAAATGCAGCATCATATACATAGGAAGGAAATGCAAAAAAGATATGATTTTTTTTTTCCTATTCATTTTACTGAGATGTAATTTGGTTTCAAATTTCAATGCAGAGCTAATGTTTACATTTCTCTA</genome_strand>
        <mrna_strand>CATCATTACGCTACTAAATGCTGTTGGAACTCCACG...........................................................................................................................................................................................GTCACTCCATCTGCTGGTATTTTGGATCCTTTTCGAGAATGTAATGTCACTCCACCGTACTAAGGCCACCTTCATCGGCTTGTTGGAGGCAGGACGGGTGAATGAATGGATTGTCACGGAGAAATTAGGGGACGCGCTGAAGTTAAAATCAGCTACCAAAGCGTTTAAAAAACATCGAATGAGGCTAGGTGACAG.............................................................................................GATCCATTTGTTAGAGTTTGCTGCTGGTGCATACCTCTTCTTCTGTGGATGTTATGACATTGCATTTGGTACTAACCACTATTTTCTCTACCTATTCATTCAAGCATTCGCCTTTCTCATCGTTGGATTTGGTTACGTTGGTACTTTCATCCCCAACTCATAATCAACGCTCGTGAAACTGATCTCATGGTA-GTAGCACCA..................................................AAAAAAAAAGTGTGGCGTTTCTTGTTTTGGAGTGTTG-TTTTTGATCATTTTGTAAAGAGATAAATAGTTGAGTATATTCTTTTTAGGTCATTTCAAACATGAAAGTGATTCGAGCCCTGAGGGTCAGGG-C----TC--GAATCG--T-GT-TTTGTTCTCTTTGTGTATATTCTCAGAAATAGTCCTATGGTTAAATGCAGCATCATATACATAGGAAGGAGATGCAAAAAAGATATGATTTTTTTTTTCCTATTCATTTTACTGAGATGTAATTTGGTTTCAAATTTCAATGCAGAGCTAATGTTTACATTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545979" ref_strand="+" ref_description="SGN-E545979 [TUS-69-B18](-)">
      <seq>aagagataaatagttgagtatattctttttaggtcatttcaaacatgaaagtgattcgagccctgagggtcagggctcgaatcgtgttttgttctctttgtgtatattctcagaaatagtcctatggttaaatgcagcatcatatacataggaaggagatgccaaaaagatatgatttttttttcctattcattttactgagatgtaatttggtctcaaatttcaatgccgagttaatgtttacatttctctcccaaaaaaggaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="7052" stop="7919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7352" g_stop="7618" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="276"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E545979" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7352" e_stop="7618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATAAATAGTTTGGTATATTCTTTTTAGGTCATTTCAAACATGAAAGTGATTCGAGCCCTGAGGGTCAGGGTCAGGGTCAGGGCTCGAATCGTGTTTGTTCTCTTTGTGTATATTCTCAGAAAGAGTCCTATGGTTAAATGCAGCATCATATACATAGGAAGGAAATGCAAAAAAGATATGATTTTTTTTTTCCTATTCATTTTACTGAGATGTAATTTGGTTTCAAATTTCAATGCAGAGCTAATGTTTACATTTCTCTACC</genome_strand>
        <mrna_strand>AAGAGATAAATAGTTGAGTATATTCTTTTTAGGTCATTTCAAACATGAAAGTGATTCGAGCCCTGAGGGTCAGGG-C----TC--GAATCG--T-GT-TTTGTTCTCTTTGTGTATATTCTCAGAAATAGTCCTATGGTTAAATGCAGCATCATATACATAGGAAGGAGATGCCAAAAAGATATGA-TTTTTTTTTCCTATTCATTTTACTGAGATGTAATTTGGTCTCAAATTTCAATGCCGAGTTAATGTTTACATTTCTCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200215" ref_strand="+" ref_description="SGN-E200215 [cLEC-12-I11]">
      <seq>tctcatccaatttgttcattgaaaaaaaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11799" stop="14274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12099" g_stop="12250" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="215" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="280" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="328" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13974" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="398" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E200215" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12099" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCCAATTTGTTCATTGAAAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</genome_strand>
        <mrna_strand>TCTCATCCAATTTGTTCATTG-AAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744847" ref_strand="+" ref_description="SGN-E744847 [GI|19280]">
      <seq>caaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="17093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12125" g_stop="12250" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="190" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="255" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="303" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="390" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="471" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="573" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="654" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="729" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="792" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="870" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="1065" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1116" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1117" r_stop="1205" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1206" r_stop="1257" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1258" r_stop="1314" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="16555" g_stop="16793" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1315" r_stop="1553" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E744847" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12125" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTT</genome_strand>
        <mrna_strand>CAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560703" ref_strand="+" ref_description="SGN-E560703 [20399]">
      <seq>aaaaaactaaactttttctcttcactcttttctactatttctctcttcatatgatccaatgtgcaactagtcaagatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctaggagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11828" stop="15209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12125" g_stop="12250" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="192" r_length="65" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="257" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="305" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="473" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="575" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14909" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="643" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E560703" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12125" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATA-GATCTAATG-GCAACTA-TCAA-ATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCA-GAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTA</genome_strand>
        <mrna_strand>AAAAAAC--TAAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATATGATCCAATGTGCAACTAGTCAAGATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746773" ref_strand="+" ref_description="SGN-E746773 [GI|47104509]">
      <seq>aaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="389" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="572" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="653" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="728" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="791" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="869" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="1064" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1065" r_stop="1115" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1204" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1205" r_stop="1256" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1257" r_stop="1313" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1314" r_stop="1638" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1639" polyA_stop="1655"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E746773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1638</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699505" ref_strand="+" ref_description="SGN-E699505 [FA10BD05]">
      <seq>aaaatctataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="15786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="389" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="572" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="653" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="728" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="791" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15486" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="853" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E699505" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCT</genome_strand>
        <mrna_strand>AAAATCTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379398" ref_strand="+" ref_description="SGN-E379398 [TUS-3-I17]">
      <seq>aaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaaatttcaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatggaggtggttttgctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="15477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="389" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="572" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="653" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15177" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="721" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E379398" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAA</genome_strand>
        <mrna_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAAATTTCAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGGAGGTGGTTTTGCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481009" ref_strand="+" ref_description="SGN-E481009 [cSTD-16-K1]">
      <seq>aaaaaccaaaactttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctgggaaacaactcgcaatgcangaatttatgatccttcctgttggagctgctaatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="15179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="187" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="252" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="300" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="387" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="468" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="570" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14879" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="608" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481009" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</genome_strand>
        <mrna_strand>AAAAACCA-AAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGGAAACAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419631" ref_strand="+" ref_description="SGN-E419631 [STM-29-P8]">
      <seq>aaaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcangaatttatgatccttcctgttggagctgctaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="569" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14876" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="604" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E419631" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTT</genome_strand>
        <mrna_strand>AAAAAC--CAAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206819" ref_strand="+" ref_description="SGN-E206819 [cLEC-33-G9]">
      <seq>aaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="389" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="572" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14853" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="584" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATC</genome_strand>
        <mrna_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273173" ref_strand="+" ref_description="SGN-E273173 [cLEM-24-H2]">
      <seq>aaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="15061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="389" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14761" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="569" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E273173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</genome_strand>
        <mrna_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481750" ref_strand="+" ref_description="SGN-E481750 [cSTD-19-K2]">
      <seq>aaaaaccaagtttttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcangaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccangttctgccttcaatgtgattaatggtggatctcatgccggaaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14754" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="559" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481750" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACT</genome_strand>
        <mrna_strand>AAAAACCA-AGT-TTTTCTCT-TTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCANGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCANGTTCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480458" ref_strand="+" ref_description="SGN-E480458 [cSTD-14-A11]">
      <seq>aaaaacaaaactttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcangaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="15047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14747" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="552" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E480458" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAA</genome_strand>
        <mrna_strand>AAAAAC-A-AAACTT-TTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCANGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416189" ref_strand="+" ref_description="SGN-E416189 [STM-22-L19]">
      <seq>aaaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14741" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="546" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E416189" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATG</genome_strand>
        <mrna_strand>AAAAAC--CAAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248515" ref_strand="+" ref_description="SGN-E248515 [cLEF-59-H11]">
      <seq>aaaaaccaaactttttctcttcactcttttctactatttcgcgcttcagggatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcangaatgttccattgtacaagcacattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E248515" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AAAAAC--CAAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCGCGCTTCAGGGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCANGAATGTTCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405166" ref_strand="+" ref_description="SGN-E405166 [PPC-16-F24]">
      <seq>aaaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgaaggatggaggatctgactacctcggaaagggtgtttcaaaagctgttaacaatgtcaactcaattattggccctgctctcatcggcaaagacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgttccattgtacaagcacattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E405166" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AAAAAC--CAAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAAGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAA.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAA...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTTCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207246" ref_strand="+" ref_description="SGN-E207246 [cLEC-30-J2]">
      <seq>aaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgagtaaagctggcgctgctgtcacgaatgtgccattgtacaagcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="389" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGAGTAAAGCTGGCGCTGCTGTCACGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438400" ref_strand="+" ref_description="SGN-E438400 [cSTA-7-P13]">
      <seq>aaaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14131" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="437" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E438400" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGC</genome_strand>
        <mrna_strand>AAAAAC--CAAAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200691" ref_strand="+" ref_description="SGN-E200691 [cLEC-9-L1]">
      <seq>aaaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11826" stop="14268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12126" g_stop="12250" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="189" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="254" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="302" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13968" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="366" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E200691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12126" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATG</genome_strand>
        <mrna_strand>AAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424531" ref_strand="+" ref_description="SGN-E424531 [STM-43-P21]">
      <seq>aaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgcggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaatatttttgatggttttgctttttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="250" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13767" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="260" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="304" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="356" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="413" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16913" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="768" r_length="355" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E424531" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13767"/>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATA-TTTTGATGGTTTTGGTTTTT-TCAAATCTCAA</genome_strand>
        <mrna_strand>AAAACCA--AAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGCGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAATATTTTTGATGGTTTTGCTTTTTCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452730" ref_strand="+" ref_description="SGN-E452730 [cSTS-17-D20]">
      <seq>aaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatnnttgttttgtgcggttttattagtattttgaattctgaaaaagagagagttcttttttaggcttggtgactgtaaactttgaatgcaagtttgactatggtctaattaatatttngatggtttgctttttctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="17111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="250" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13767" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="260" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="304" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="356" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="413" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16912" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="760" r_length="347" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E452730" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13767"/>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCA</genome_strand>
        <mrna_strand>AAAACCA--AAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATNNTTGTTTTGTGCGGTTTTATTAGTATTTTGAATTCTG--AA-AAAGAGAGAG-TTCTTTTTTAGGCTTGGTGACTGT-AAACTTTGA-ATGCAAGTTT-GACTATGGTCTAATTAATATTTNGATGGTTTGCTTTTTCTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452592" ref_strand="+" ref_description="SGN-E452592 [cSTS-17-E22]">
      <seq>aaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgcggttttattagtattttgaattctgaaaagaagagagttctttttttaggcttggtgactgtaaactttgatatgcaagtttgtactatgttctaattaaaattttgatggttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="17199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="250" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13767" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="260" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="304" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="356" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="413" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16899" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="750" r_length="337" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E452592" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13767"/>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTT</genome_strand>
        <mrna_strand>AAAACCA--AAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGCGGTTTTATTAGTATTTTGAATTCTGAAAAG---AAGAGAGTTCTTTTTTTAGGCTTGGTGACTGT-AAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAAATTTTGATGGTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424586" ref_strand="+" ref_description="SGN-E424586 [STM-43-F14]">
      <seq>aaaaccaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="16996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="250" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13767" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="260" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="304" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="356" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="413" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16696" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="553" r_length="140" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E424586" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13767"/>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTC</genome_strand>
        <mrna_strand>AAAACCA--AAC-TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211120" ref_strand="+" ref_description="SGN-E211120 [cLEC-69-H24]">
      <seq>aaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="15482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="652" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15182" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="725" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E211120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCC</genome_strand>
        <mrna_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577936" ref_strand="+" ref_description="SGN-E577936 [LE08BF04]">
      <seq>aaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacanatgtcggtgatgagggtgtttttgctcctaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="15481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="652" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15181" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="724" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E577936" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATC</genome_strand>
        <mrna_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACANATGTCGGTGATGAGGGTGTTTTTGCTCCTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210641" ref_strand="+" ref_description="SGN-E210641 [cLEC-68-K14]">
      <seq>aaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="15481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="652" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15181" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="724" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E210641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATC</genome_strand>
        <mrna_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212526" ref_strand="+" ref_description="SGN-E212526 [cLEC-74-G14]">
      <seq>aaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacnaactcgcaatgcaggaaattatgatccttcctgttggagctgctaattcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="15182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14882" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="611" r_length="40" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E212526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGA</genome_strand>
        <mrna_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACNAACTCGCAATGCAG.............................................................................GAAATTATGATCCTTCCTGTTGGAGCTGCTAA-TTCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214615" ref_strand="+" ref_description="SGN-E214615 [cLEC-79-K11]">
      <seq>aaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="14981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14681" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="488" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTG</genome_strand>
        <mrna_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214584" ref_strand="+" ref_description="SGN-E214584 [cLEC-79-L8]">
      <seq>aaaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11827" stop="14440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12127" g_stop="12250" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="448" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12127" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTC</genome_strand>
        <mrna_strand>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276817" ref_strand="+" ref_description="SGN-E276817 [cLEN-14-I6]">
      <seq>aaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggcttggaagtctatcaccatttgaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11828" stop="15225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12128" g_stop="12250" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="187" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="252" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="300" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="387" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="468" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="570" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14925" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="654" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E276817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12128" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTT</genome_strand>
        <mrna_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTTGGAAGTCTATCACCATTTGAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211326" ref_strand="+" ref_description="SGN-E211326 [cLEC-70-B2]">
      <seq>aaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11828" stop="15175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12128" g_stop="12250" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="187" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="252" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="300" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="387" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="468" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="570" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14875" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="604" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E211326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12128" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATT</genome_strand>
        <mrna_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275849" ref_strand="+" ref_description="SGN-E275849 [cLEN-18-F14]">
      <seq>aaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgatggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgcctgtaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaattgatgatccttcctgttggagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11828" stop="15171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12128" g_stop="12250" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="187" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="252" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="300" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="387" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="468" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="570" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14871" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="600" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E275849" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12128" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCT</genome_strand>
        <mrna_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGATGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTGTAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTGATGATCCTTCCTGTTGGAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270137" ref_strand="+" ref_description="SGN-E270137 [cLEM-7-F20]">
      <seq>aaactataaacttttttctcttcactctgtgtctactatttcggtgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11828" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12128" g_stop="12250" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14853" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="583" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270137" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12128" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAAACTTTTTTCTCTTCACTCT-TTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATC</genome_strand>
        <mrna_strand>AAACTATAAACTTTTTTCTCTTCACTCTGTGTCTACTATTTCGGTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273105" ref_strand="+" ref_description="SGN-E273105 [cLEM-24-K5]">
      <seq>aaactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtaccatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11828" stop="14980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12128" g_stop="12250" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="188" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="301" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14680" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="487" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E273105" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12128" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTA-CATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCT</genome_strand>
        <mrna_strand>AAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACCATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251879" ref_strand="+" ref_description="SGN-E251879 [cLEG-14-L14]">
      <seq>aactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaagaatttatgatccttcctgttggagctgctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11829" stop="15177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12129" g_stop="12250" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="569" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14877" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="605" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E251879" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12129" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</genome_strand>
        <mrna_strand>AACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAA.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253532" ref_strand="+" ref_description="SGN-E253532 [cLEG-24-M20]">
      <seq>aactataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaagttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11829" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12129" g_stop="12250" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="186" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="251" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="299" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E253532" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12129" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293105" ref_strand="+" ref_description="SGN-E293105 [cLET-12-O22]">
      <seq>ctataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11831" stop="14980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="12250" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="249" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="297" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="384" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="465" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14680" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="483" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E293105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCT</genome_strand>
        <mrna_strand>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263470" ref_strand="+" ref_description="SGN-E263470 [cLEG-69-B15]">
      <seq>ctataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11831" stop="13940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="12250" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13640" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="217" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E263470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAG</genome_strand>
        <mrna_strand>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263445" ref_strand="+" ref_description="SGN-E263445 [cLEG-69-L12]">
      <seq>ctataaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11831" stop="13938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12131" g_stop="12250" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13638" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="215" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E263445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12131" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGG</genome_strand>
        <mrna_strand>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603851" ref_strand="+" ref_description="SGN-E603851 [67040]">
      <seq>aaccaagtttttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaacgaagaaatatggtcaggatgccacaaatgtcgggtgatgagggtggtttgctcctaatatccaggagaacaacggaaggtcttgaattgctcaagacagccattgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12133" g_stop="12250" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="183" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="248" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="296" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="383" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="464" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="566" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="647" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="723" r_length="76" r_score="0.933"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15314" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="769" r_length="46" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E603851" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12133" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACTTTTTTCTC-TTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAA-GAAGAAATATGGTCAGGATGCCACAAATGTC-GGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAA-GGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAA</genome_strand>
        <mrna_strand>AACCAAGTTTTTCTCTTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAACGAAGAAATATGGTCAGGATGCCACAAATGTCGGGTGATGAGGGTGG-TTTGCTCCTAATATCCAG.....................................................................................GAGAACAACGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481333" ref_strand="+" ref_description="SGN-E481333 [cSTD-17-H12]">
      <seq>caaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12134" g_stop="12250" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="180" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="461" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="563" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14868" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="590" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481333" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12134" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCT</genome_strand>
        <mrna_strand>CAAACTTT-TTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269487" ref_strand="+" ref_description="SGN-E269487 [cLEM-2-L17]">
      <seq>taaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11834" stop="15061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12134" g_stop="12250" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="181" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="246" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="294" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="381" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="462" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14761" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="561" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E269487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12134" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</genome_strand>
        <mrna_strand>TAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440978" ref_strand="+" ref_description="SGN-E440978 [cSTA-28-B14]">
      <seq>caaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12134" g_stop="12250" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="180" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="461" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14743" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="542" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E440978" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12134" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCC</genome_strand>
        <mrna_strand>CAAACTTT-TTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271807" ref_strand="+" ref_description="SGN-E271807 [cLEM-8-C18]">
      <seq>taaactttgttctcttcactctatgatactatgtctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtgacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11834" stop="14980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12134" g_stop="12250" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="181" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="246" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="294" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="381" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="462" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14680" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="480" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271807" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12134" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCT</genome_strand>
        <mrna_strand>TAAACTTTGTTCTCTTCACTCTATGATACTATGTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTGACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441113" ref_strand="+" ref_description="SGN-E441113 [cSTA-29-O19]">
      <seq>caaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtaccatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccacccgatcagactggtcttgataaccttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgccaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12134" g_stop="12250" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="181" r_length="65" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="246" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="294" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="382" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14139" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="442" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E441113" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12134" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTA-CATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAA-CTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTG-CAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGT</genome_strand>
        <mrna_strand>CAAACTTT-TTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACCATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCACCCGATCAGACTGGTCTTGATAACCTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478192" ref_strand="+" ref_description="SGN-E478192 [cSTD-3-F23]">
      <seq>aaaactttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcngtgacgaggggtggttttgctcctaatatccaggagaacaggaaggtcttgaattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12135" g_stop="12250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="180" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="461" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="563" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="644" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="720" r_length="76" r_score="0.933"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="746" r_length="26" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478192" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12135" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGA-GGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTC</genome_strand>
        <mrna_strand>AAAACTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCNGTGACGAGGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAAC-AGGAAGGTCTTGAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477764" ref_strand="+" ref_description="SGN-E477764 [cSTD-1-N23]">
      <seq>aaactttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaactcgcaatgcangaatttatgatccttcctgttggagctgctaatttcaagaggccatgaagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12135" g_stop="12250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="179" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="244" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="460" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="560" r_length="100" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14899" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="617" r_length="57" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E477764" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12135" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCT</genome_strand>
        <mrna_strand>AAACT-TTTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGT-ACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAAC-AACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA-GAGGCCATGAAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481769" ref_strand="+" ref_description="SGN-E481769 [cSTD-19-O4]">
      <seq>aaactttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaaattggtattaccagtttctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12135" g_stop="12250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="179" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="244" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="460" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="562" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14851" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="572" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481769" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12135" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGA</genome_strand>
        <mrna_strand>AAACT-TTTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAATTGGTATTACCAGTTTCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478137" ref_strand="+" ref_description="SGN-E478137 [cSTD-3-E24]">
      <seq>aaaactgggggtctgcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataactgcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgcgtcacttgctgggtgtaaagctggcgctgctgtcaggaatgttccattggacaagcacattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11846" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12135" g_stop="12250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="180" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="461" r_length="81" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478137" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12135" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AAAACTGGGGGTCTGCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTGCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGCGTCACTTGCTGGGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319882" ref_strand="+" ref_description="SGN-E319882 [cTOB-12-A16]">
      <seq>aaacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgccggcaaggacccaactgatcacgactgatcttgatcacttcatgggtcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12135" g_stop="12250" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="180" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="381" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14134" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="435" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E319882" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12135" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCA-GACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCT</genome_strand>
        <mrna_strand>AAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGCCGGCAAG...................................................................................................GACCCAACTGATCACGACTGATCTTGATCACTTCATGGGTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710106" ref_strand="+" ref_description="SGN-E710106 [FA54AH08]">
      <seq>cgcttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggaatgtgcagcatctgaattttacggaaaggacaaatcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11838" stop="15782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12136" g_stop="12250" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="179" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="244" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="460" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="562" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="643" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="718" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="781" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15482" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="839" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E710106" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12136" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATG</genome_strand>
        <mrna_strand>CGCTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGAATGTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482576" ref_strand="+" ref_description="SGN-E482576 [cSTD-22-N23]">
      <seq>tttgtttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatgggtcatgagttagatggaactcaaaacgagtgggggtggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="14977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12136" g_stop="12250" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="179" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="244" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="460" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14677" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="475" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E482576" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12136" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTG</genome_strand>
        <mrna_strand>TTTGTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGGTCATGAGTTAGATGGAACTCAAAACGAGTGGGGGTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482054" ref_strand="+" ref_description="SGN-E482054 [cSTD-20-N17]">
      <seq>aactttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggtatatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgttccattgtacaagcacattgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11836" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12136" g_stop="12250" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="178" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="243" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="291" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="378" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="459" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E482054" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12136" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AACTT-TTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTATATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTTCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302948" ref_strand="+" ref_description="SGN-E302948 [cLEW-26-J13]">
      <seq>aacttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtaccatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11836" stop="14428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12136" g_stop="12250" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="180" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="293" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14128" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="428" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E302948" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12136" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTA-CATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCT</genome_strand>
        <mrna_strand>AACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACCATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437053" ref_strand="+" ref_description="SGN-E437053 [cSTA-2-F3]">
      <seq>aactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11836" stop="14293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12136" g_stop="12250" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="178" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="243" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="291" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="378" r_length="87" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E437053" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12136" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG</genome_strand>
        <mrna_strand>AACTT-TTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478533" ref_strand="+" ref_description="SGN-E478533 [cSTD-5-N9]">
      <seq>actttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11837" stop="15456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12137" g_stop="12250" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="560" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15156" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="688" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478533" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12137" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</genome_strand>
        <mrna_strand>ACTTT-TTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554614" ref_strand="+" ref_description="SGN-E554614 [cTSC-4-N3]">
      <seq>cttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaagaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11838" stop="15760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12138" g_stop="12250" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="560" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="716" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="779" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15460" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="815" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E554614" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12138" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTT</genome_strand>
        <mrna_strand>CTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAAGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554437" ref_strand="+" ref_description="SGN-E554437 [cTSC-4-E6]">
      <seq>cttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttaaatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcagtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgtattgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11838" stop="15597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12138" g_stop="12250" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="560" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="716" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15297" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="744" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E554437" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12138" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCA</genome_strand>
        <mrna_strand>CTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAAATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCAGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGTATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337257" ref_strand="+" ref_description="SGN-E337257 [cTOE-7-O12]">
      <seq>cttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11838" stop="14438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12138" g_stop="12250" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14138" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="435" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E337257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12138" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTG</genome_strand>
        <mrna_strand>CTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729048" ref_strand="+" ref_description="SGN-E729048 [LA19DC05]">
      <seq>cttttttctcttacactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactaccttcgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11838" stop="13960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12138" g_stop="12250" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="178" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13660" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="231" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E729048" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12138" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCTCTT-CACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAG</genome_strand>
        <mrna_strand>CTTTTTTCTCTTACACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTCGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479867" ref_strand="+" ref_description="SGN-E479867 [cSTD-11-N15]">
      <seq>gtttttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggntggtttttgctcctaatatccaggagaacaagggaaggtcttngaattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="560" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="718" r_length="77" r_score="0.947"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="747" r_length="29" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E479867" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTC-TTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGG-TGG-TTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAA-GGAAGGTCTT-GAATTGCTC</genome_strand>
        <mrna_strand>GTTTTTCTCTTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGNTGGTTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGGAAGGTCTTNGAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585635" ref_strand="+" ref_description="SGN-E585635 [68097]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccattttgaaggctgtgattaagaagaaatatggtcagcgatggccacaaatgtcggtgatgagggtggttttgctcctaaatatccaggagaacaaggaaaggtcttgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="641" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="719" r_length="78" r_score="0.920"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15293" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="744" r_length="25" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E585635" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCA-TTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAG-GAT-GCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCT-AATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGG-AAGGTCTTGAATTG</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGCGATGGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAAATATCCAG.....................................................................................GAGAACAAGGAAAGGTCTTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578486" ref_strand="+" ref_description="SGN-E578486 [85604]">
      <seq>gtttttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattgggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgcctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaacgctgtgattaagaagaaatatggtcacgatgccacaaatgtcggtgatgagggtggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="291" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="378" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="459" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="561" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="643" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15168" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="702" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E578486" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTC-TTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATT-GGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTG-CTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTT</genome_strand>
        <mrna_strand>GTTTTTCTCTTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAC...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCACGATGCCACAAATGTCGGTGATGAGGGTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486956" ref_strand="+" ref_description="SGN-E486956 [cSTE-23-D12]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaagccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="640" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15147" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="678" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E486956" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAA</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAAGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478075" ref_strand="+" ref_description="SGN-E478075 [cSTD-3-C11]">
      <seq>gtttttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="560" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15142" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="674" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478075" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTC-TTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCC</genome_strand>
        <mrna_strand>GTTTTTCTCTTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560672" ref_strand="+" ref_description="SGN-E560672 [20363]">
      <seq>ctttttctcttcacgtcttttctactatttctctcttcatagatccaatgagcaactatcaaatccattgaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaacagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatccgcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaaatttcaacgaggccatgaagatgggctgtgaaagtctatccaccattttgaagtctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="179" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="244" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="380" r_length="88" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="461" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="564" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="649" r_length="85" r_score="0.889"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15117" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="657" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E560672" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCAC-TCTTTTCTACTATTTCTCTGTTCATAGATCTAATG-GCAACTATCAAATCCATT-AAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAA-AGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGAT-CTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCT-AATTTCAAGGAGGCCATGAAGATGGGCTGTG-AAGTCTAT-CACCA-TTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGAT</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACGTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGAGCAACTATCAAATCCATTGAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAACAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCCGCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAAATTTCAACGAGGCCATGAAGATGGGCTGTGAAAGTCTATCCACCATTTTGAAG...........................................................................................................................................................................................TCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450952" ref_strand="+" ref_description="SGN-E450952 [cSTS-10-P14]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14920" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="638" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E450952" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGA</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209789" ref_strand="+" ref_description="SGN-E209789 [cLEC-52-N1]">
      <seq>ttttttctcttcactcttttctactatttctgtgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14914" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="632" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E209789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTGTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214085" ref_strand="+" ref_description="SGN-E214085 [cLEC-80-E6]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14914" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="632" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369611" ref_strand="+" ref_description="SGN-E369611 [TUS-25-P24]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatcctttctgttggagctgcttatttcaaggaggccatgaagatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14897" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="615" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E369611" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTTCTGTTGGAGCTGCTTATTTCAAGGAGGCCATGAAGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209795" ref_strand="+" ref_description="SGN-E209795 [cLEC-52-P1]">
      <seq>ttttttctctaggctcttttctactatttctctgttcatagatctaatggcaactatcaaatccattagagcttgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgctccaagaggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccaggtcctgccttcaatgtgattaatggtggatctaatgccggaaacaaactctcaatgcaggaatttatgatccttcctgttggagctgctaatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="15179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14879" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="597" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E209795" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</genome_strand>
        <mrna_strand>TTTTTTCTCTAGGCTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAGAGCTTGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGCTCCAAGAGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGGTCCTGCCTTCAATGTGATTAATGGTGGATCTAATGCCGGAAACAAACTCTCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255380" ref_strand="+" ref_description="SGN-E255380 [cLEG-30-J3]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14878" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="596" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E255380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCA</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446902" ref_strand="+" ref_description="SGN-E446902 [cSTA-23-O8]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtaccatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcangaatttatgatccttcctgttggagctgctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="177" r_length="65" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="560" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14877" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="596" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E446902" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTA-CATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACCATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271915" ref_strand="+" ref_description="SGN-E271915 [cLEM-8-P4]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaagttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaagctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14877" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="595" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271915" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAA.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207477" ref_strand="+" ref_description="SGN-E207477 [cLEC-36-M21]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14877" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="595" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441249" ref_strand="+" ref_description="SGN-E441249 [cSTA-29-D8]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14868" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="586" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E441249" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCT</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270383" ref_strand="+" ref_description="SGN-E270383 [cLEM-1-L7]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14868" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="586" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCT</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271735" ref_strand="+" ref_description="SGN-E271735 [cLEM-23-L4]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14868" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="586" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCT</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210449" ref_strand="+" ref_description="SGN-E210449 [cLEC-35-A22]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14860" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="578" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E210449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247463" ref_strand="+" ref_description="SGN-E247463 [cLEG-3-E3]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14853" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="571" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E247463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329510" ref_strand="+" ref_description="SGN-E329510 [cTOD-11-E3]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14852" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="570" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E329510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGAT</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320383" ref_strand="+" ref_description="SGN-E320383 [cTOB-22-G4]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactctaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcacgaatgtgccattgtacaagcacattgctgatctggctggtaacaagaagttggtattaccagttcctgccttcgatgtgatgtatggtggatctcatgccggaaacaaactcgcaatgcaggaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="559" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14848" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="566" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E320383" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTA</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCTAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCACGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATCTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCGATGTGATGTATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441173" ref_strand="+" ref_description="SGN-E441173 [cSTA-29-O8]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaaggtcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtattcgctacagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgttaaataggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctgcgaacaagaaattggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14761" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="556" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E441173" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGGTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTCGCTACAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTAAATAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGCGAACAAGAAATTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248758" ref_strand="+" ref_description="SGN-E248758 [cLEG-5-C24]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcgggtatcaaatccattaaagctggtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaacttgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14761" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="556" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E248758" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCGGGTATCAAATCCATTAAAGCTGGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248759" ref_strand="+" ref_description="SGN-E248759 [cLEG-5-E8]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaggtccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14753" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="548" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E248759" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAAC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAGGTCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272360" ref_strand="+" ref_description="SGN-E272360 [cLEM-19-G15]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14748" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="543" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E272360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAA</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478572" ref_strand="+" ref_description="SGN-E478572 [cSTD-5-N12]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaaacacattgctgatttggctgggaacaagaagttgggattaccagttcctgccttcaatgtgattaatggaggatctcatgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14746" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="541" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478572" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGA</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGGAACAAGAAGTTGGGATTACCAGTTCCTGCCTTCAATGTGATTAATGGAGGATCTCATGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206156" ref_strand="+" ref_description="SGN-E206156 [cLEC-29-N16]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14715" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="510" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTT</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319475" ref_strand="+" ref_description="SGN-E319475 [cTOB-15-C23]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="15005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14705" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="500" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E319475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575164" ref_strand="+" ref_description="SGN-E575164 [34746]">
      <seq>ctttttctcttcactcttttctactatttgctcgcaatcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaatggctgataacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaacagctggcgctgctgtcaggaatgtaccattgtacaagcacattgctgatttcggctggttaacaagaagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="14996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="178" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="244" r_length="66" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="461" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14696" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="497" r_length="36" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E575164" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTT-CTC-TGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAA-GGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAA-AGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTT-GGCTGG-TAACAAGAAGTTGG</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTGCTCGCAATCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAATG.....................................................................................GCTGATAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAACAGCTGGCGCTGCTGTCAGGAATGTACCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTCGGCTGGTTAACAAGAAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206857" ref_strand="+" ref_description="SGN-E206857 [cLEC-33-K10]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14688" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="483" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAA</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254988" ref_strand="+" ref_description="SGN-E254988 [cLEG-33-F14]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgccaanaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="460" r_length="84" r_score="0.926"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14683" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="481" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E254988" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTG-C-A-AATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGT</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCCAANAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320423" ref_strand="+" ref_description="SGN-E320423 [cTOB-22-D23]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacaggcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttaccaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaaacacattgctgatttggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14682" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="477" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E320423" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGGCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACCAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439127" ref_strand="+" ref_description="SGN-E439127 [cSTA-11-C19]">
      <seq>cgaggattcactcaatccatgggcaaactttttctcttcactcttttctacctatttctctcttcatagatccaatggccactatcaaatccattaaagctcgtcagatctttgacagcccgtggtaaccccacccttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgttccattgtacaagcacattgctgatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="141" r_length="114" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="205" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="270" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="318" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="405" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="486" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14679" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="503" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E439127" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTA-CTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAG-CCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGC</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACCTATTTCTCTCTTCATAGATCCAATGGCCACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCCGTGGTAACCCCACCCTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252842" ref_strand="+" ref_description="SGN-E252842 [cLEG-16-E18]">
      <seq>ttttttctcttcactcttttctactatttctctgctcatagatctaatggcaactatcaaatccatcaaagctcgtcagatctttgacagccggggtaaccccacagtcgaagttgatgtacatatctcaaatggtgtgtttgccacagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgataacaatgccaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggccttgataactgcatggttcatcagatcgatggaactcaaaatgagtggggttggtgcaaagaaaagctcggtgcaaatgccatacttgctgtgtaacttgctgtgtgtaaagattgagctgctgtcaagaatgtgccattgtacaagcacattgctgatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14679" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="474" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E252842" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGCTCATAGATCTAATGGCAACTATCAAATCCATCAAAGCTCGTCAGATCTTTGACAGCCGGGGTAACCCCACAGTCGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCACAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGATAACAATGCCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGCCTTGATAACTGCATGGTTCATCAGATCGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTCGGTGCAAATGCCATACTTGCTGTGTAACTTGCTGTGTGTAAAGATTGAGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441286" ref_strand="+" ref_description="SGN-E441286 [cSTA-29-L22]">
      <seq>ccccgggctgcaggcaaactttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11835" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="130" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="194" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="259" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="307" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="394" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="475" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E441286" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223086" ref_strand="-" ref_description="SGN-E223086 [cLEL-14-H24](-)">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E223086" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223086" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319514" ref_strand="+" ref_description="SGN-E319514 [cTOB-15-O9]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="457" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E319514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200968" ref_strand="+" ref_description="SGN-E200968 [cLEC-5-I13]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14155" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="451" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E200968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319507" ref_strand="+" ref_description="SGN-E319507 [cTOB-15-M9]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccaaagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctttgtgtaaagctggcgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14138" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="434" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E319507" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAAAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTTTGTGTAAAGCTGGCGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249053" ref_strand="+" ref_description="SGN-E249053 [cLEF-49-K24]">
      <seq>ttttttcttcttcacttcttttctacttatttctctgttcacggaatcttaatggcaacctatcaaatccattaaagctcgtcagatctttgaccagcccgtggtaaccccaccagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttaccaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="250" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="298" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14132" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="437" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E249053" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTC-TCTTCAC-TCTTTTCTAC-TATTTCTCTGTTCATAG-ATC-TAATGGCAA-CTATCAAATCCATTAAAGCTCGTCAGATCTTTGA-CAG-CCGTGGTAACCCCAC-AGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCG</genome_strand>
        <mrna_strand>TTTTTTCTTCTTCACTTCTTTTCTACTTATTTCTCTGTTCACGGAATCTTAATGGCAACCTATCAAATCCATTAAAGCTCGTCAGATCTTTGACCAGCCCGTGGTAACCCCACCAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACCAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330685" ref_strand="+" ref_description="SGN-E330685 [cTOD-8-M3]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14128" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="424" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E330685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCT</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207222" ref_strand="+" ref_description="SGN-E207222 [cLEC-30-N17]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgagtgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14127" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="423" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGAGTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325199" ref_strand="+" ref_description="SGN-E325199 [cTOC-1-A17]">
      <seq>ttttttctcttcactcttttctactatttctctggtcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgagggtgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggacttgataacttcatgggtcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14115" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="411" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E325199" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGGTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGACTTGATAACTTCATGGGTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223158" ref_strand="-" ref_description="SGN-E223158 [cLEL-14-H24](-)">
      <seq>ttttttctcttcactctatactactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14115" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="411" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E223158" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223158" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGC</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTATACTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470059" ref_strand="+" ref_description="SGN-E470059 [cSTB-16-H18]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="14302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14096" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="392" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E470059" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCA</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440279" ref_strand="+" ref_description="SGN-E440279 [cSTA-16-O11]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="14274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="177" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="242" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="290" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13974" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="360" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E440279" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCA-CAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247081" ref_strand="+" ref_description="SGN-E247081 [cLEF-41-B16]">
      <seq>ttttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11839" stop="14274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="176" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="241" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="289" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13974" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="359" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E247081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</genome_strand>
        <mrna_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477689" ref_strand="+" ref_description="SGN-E477689 [cSTD-1-M22]">
      <seq>ctttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgaccagccgtggtaaccccaccgttgagggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccgggatttatgaagcccttgaattgagggatggaggatctgactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="13953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12139" g_stop="12250" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="178" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13653" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="224" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E477689" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12139" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGA-CAGCCGTGGTAACCCCACAGTCGA-GGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCT</genome_strand>
        <mrna_strand>CTTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACCAGCCGTGGTAACCCCACCGTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600415" ref_strand="+" ref_description="SGN-E600415 [53425]">
      <seq>tttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagcatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgacggtgggttttgctcctaagtatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="15484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="174" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="287" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="455" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="639" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="716" r_length="77" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E600415" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAG-ATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGT-GGTTTTGCTCCTAA-TATCCAG</genome_strand>
        <mrna_strand>TTTCTCT-TTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGCATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGACGGTGGGTTTTGCTCCTAAGTATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487480" ref_strand="+" ref_description="SGN-E487480 [cSTE-25-N21]">
      <seq>tttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgaaggtggttttgctcctaatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="558" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="639" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15182" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="712" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E487480" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCC</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAAGGTGGTTTTGCTCCTAATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487408" ref_strand="+" ref_description="SGN-E487408 [cSTE-25-M22]">
      <seq>tttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgaacgagggtggttttgctcctaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="558" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="639" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15181" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="712" r_length="73" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E487408" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTG-ATGAGGGTGGTTTTGCTCCTAATATC</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGAACGAGGGTGGTTTTGCTCCTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589874" ref_strand="+" ref_description="SGN-E589874 [43458]">
      <seq>tttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="558" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="639" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15139" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="669" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E589874" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGAT</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576402" ref_strand="+" ref_description="SGN-E576402 [59614]">
      <seq>tttctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaaagtctatcaccattttgaaggctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="174" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="287" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="455" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="640" r_length="83" r_score="0.951"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15116" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="647" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E576402" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTG-AAGTCTATCACCA-TTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGA</genome_strand>
        <mrna_strand>TTTCTCT-TTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAAGTCTATCACCATTTTGAAG...........................................................................................................................................................................................GCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440319" ref_strand="+" ref_description="SGN-E440319 [cSTA-16-G18]">
      <seq>tttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaagaatttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="558" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14852" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="569" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E440319" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGAT</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAA.............................................................................GAATTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201878" ref_strand="+" ref_description="SGN-E201878 [cLEC-18-C3]">
      <seq>tttttctcttcactcttttctactatttctctgttcatagatctaatggcggctatcaaatccattaaagcgcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaagaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="558" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14850" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="567" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATG</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCGGCTATCAAATCCATTAAAGCGCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAA.............................................................................GAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487328" ref_strand="+" ref_description="SGN-E487328 [cSTE-25-M21]">
      <seq>tttttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E487328" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478009" ref_strand="+" ref_description="SGN-E478009 [cSTD-2-P7]">
      <seq>tttttctcttcactcttttctactatttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgccaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11840" stop="14302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12140" g_stop="12250" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="175" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="240" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="375" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14096" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="391" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478009" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12140" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCA</genome_strand>
        <mrna_strand>TTTTTCTCTTCACTCTTTTCTACTATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCCAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211878" ref_strand="+" ref_description="SGN-E211878 [cLEC-66-A17]">
      <seq>tcttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11843" stop="15219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="12250" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="174" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="287" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="455" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14919" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="635" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E211878" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</genome_strand>
        <mrna_strand>TCTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561062" ref_strand="+" ref_description="SGN-E561062 [20813]">
      <seq>ttctctttcactcttttcctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctaagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaaacctcgcaatgcaggaatttattgatccttcctgttgggagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11843" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="12250" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="173" r_length="63" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="238" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="286" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="454" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="558" r_length="104" r_score="0.961"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14869" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="588" r_length="30" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E561062" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCACTCTTTT-CTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAAC-AAA-CTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTA-TGATCCTTCCTGTT-GGAGCTG</genome_strand>
        <mrna_strand>TTCTCT-TTCACTCTTTTCCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTA-AGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAAACCTCGCAATGCAG.............................................................................GAATTTATTGATCCTTCCTGTTGGGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281606" ref_strand="+" ref_description="SGN-E281606 [cLER-14-C11]">
      <seq>ttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11841" stop="15008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="12250" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="174" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="287" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="455" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14708" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="501" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E281606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTC</genome_strand>
        <mrna_strand>TTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356016" ref_strand="+" ref_description="SGN-E356016 [cLHT-21-D2]">
      <seq>ttttctcttcactctattctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccactgtcgaggttgatgtacatgtctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctcttgtcagcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcagaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11841" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="12250" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="174" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="287" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="455" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E356016" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>TTTTCTCTTCACTCTATTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACTGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTCAGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAGAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260253" ref_strand="+" ref_description="SGN-E260253 [cLEG-53-F13]">
      <seq>ttttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaaactggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11841" stop="14432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12141" g_stop="12250" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="174" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="287" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14132" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="426" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E260253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12141" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCG</genome_strand>
        <mrna_strand>TTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAACTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598932" ref_strand="+" ref_description="SGN-E598932 [51908]">
      <seq>tttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaacgaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttggaattgctcaaagacagccattgacgaaagcaggttacaccgggacacgtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="15638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12142" g_stop="12250" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="173" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="238" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="286" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="454" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="556" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="637" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="780" r_length="67" r_score="0.825"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15430" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="786" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E598932" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12142" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAA-GAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTT-GAATTGCTC-AAGACAGCCATTGA-GAAAGCAGGTTACA-CTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTC</genome_strand>
        <mrna_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAACGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGGAATTGCTCAAAGACAGCCATTGACGAAAGCAGGTTACACCGGGACAC............................................................................................GTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573841" ref_strand="+" ref_description="SGN-E573841 [33215]">
      <seq>ggcacgaggtttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaaatgggctgtgaagttctatcaccatttgaagtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="15227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12142" g_stop="12250" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="118" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="182" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="247" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="295" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="382" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="463" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="565" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="646" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15114" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="651" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E573841" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12142" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAG-TCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGT</genome_strand>
        <mrna_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAA-ATGGGCTGTGAAGTTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204588" ref_strand="+" ref_description="SGN-E204588 [cLEC-14-A15]">
      <seq>tttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="15179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12142" g_stop="12250" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="173" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="238" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="286" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="454" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="556" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14879" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="594" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E204588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12142" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</genome_strand>
        <mrna_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336821" ref_strand="+" ref_description="SGN-E336821 [cTOE-5-N15]">
      <seq>tttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="14438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12142" g_stop="12250" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="173" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="238" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="286" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14138" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="431" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E336821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12142" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTG</genome_strand>
        <mrna_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323960" ref_strand="+" ref_description="SGN-E323960 [cTOC-3-K24]">
      <seq>tttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="14428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12142" g_stop="12250" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="173" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="238" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="286" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14128" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="421" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E323960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12142" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCT</genome_strand>
        <mrna_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200692" ref_strand="+" ref_description="SGN-E200692 [cLEC-9-L3]">
      <seq>tggactgtcgtgggctttctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccaaagctgctgttccaagtggtgcatccaccggaatttacaaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11842" stop="14095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12142" g_stop="12250" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="124" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13795" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="291" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E200692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12142" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCT</genome_strand>
        <mrna_strand>TTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAAAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACAAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487235" ref_strand="+" ref_description="SGN-E487235 [cSTE-24-L24]">
      <seq>ttctcttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtngacgaaggtggttttgctcctaatatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11843" stop="15483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="12250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="172" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="285" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="372" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="453" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="555" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="636" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15183" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="711" r_length="75" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E487235" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGT-GATGAGGGTGGTTTTGCTCCTAATATCCA</genome_strand>
        <mrna_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTNGACGAAGGTGGTTTTGCTCCTAATATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405364" ref_strand="+" ref_description="SGN-E405364 [PPC-18-E1]">
      <seq>ngaccttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11847" stop="15450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="12250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="172" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="285" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="372" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="453" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="555" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="636" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15150" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="677" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E405364" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</genome_strand>
        <mrna_strand>NGACCTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575498" ref_strand="+" ref_description="SGN-E575498 [35132]">
      <seq>ctctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgaccagccgtggtaaccccaccgctgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaacgtggtgcatcaccggaatttattgaagccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaacttcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgctcacttgctgtgtgtaaagctggtcctgctgtcagcgaatgttccatttgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtttcctgccttcaaatgtgattaatggtggatctcatgccggaaacaaaactcgcaattgcaggaactttatgatcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11845" stop="15067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="12250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="172" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="286" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="373" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="457" r_length="84" r_score="0.877"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="563" r_length="106" r_score="0.922"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14858" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="581" r_length="18" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E575498" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGAC-AGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAA-GTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTA-CGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAAC-TCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTG-TCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAG-GAATGTGCCA-TTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGT-TCCTGCCTTC-AATGTGATTAATGGTGGATCTCATGCCGGAAAC-AAACTCGCAA-TGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAA-TTTATGATCCTTCC</genome_strand>
        <mrna_strand>CTCT-TTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACCAGCCGTGGTAACCCCACCGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAACGTGGTGCAT-CACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATTGAAG-CCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGCTCACTTGCTGTGTGTAAAGCTGGTCCTGCTGTCAGCGAATGTTCCATTTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTTCCTGCCTTCAAATGTGATTAATGGTGGATCTCATGCCGGAAACAAAACTCGCAATTGCAG.............................................................................GAACTTTATGATCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207360" ref_strand="+" ref_description="SGN-E207360 [cLEC-36-M11]">
      <seq>ttctgttgactcttttctactatttctctgttcataggtctaatggcaactatcaaatccattaaagctcgacagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccatatctgctgtctcaagtggtgcattcaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttagacggctgctaacaatgtcaactcaattattggccctgctcttgatggcgaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcagaatgagtggggttggtgcaaacaagagctgggtgcacatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctaatgccggaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11843" stop="15051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="12250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="172" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="285" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="372" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="453" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14751" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="542" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207360" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAA</genome_strand>
        <mrna_strand>TTCTGTTGACTCTTTTCTACTATTTCTCTGTTCATAGGTCTAATGGCAACTATCAAATCCATTAAAGCTCGACAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCATATCTGCTGTCTCAAGTGGTGCATTCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTAGACG.....................................................................................GCTGCTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGATGGCGAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAGAATGAGTGGGGTTGGTGCAAACAAGAG.........................................................................................CTGGGTGCACATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTAATGCCGGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274495" ref_strand="+" ref_description="SGN-E274495 [cLEN-11-D1]">
      <seq>ttctcttcactcttttctactatttctctgttcatagatctaatggcgactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctggtaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatacttgctgtgtcacttgctgagtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11843" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12143" g_stop="12250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="172" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="285" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="372" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="453" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E274495" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12143" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>TTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCGACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGGTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATACTTGCTGTGTCACTTGCTGAGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479036" ref_strand="+" ref_description="SGN-E479036 [cSTD-8-E6]">
      <seq>tctttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcangaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11846" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12144" g_stop="12250" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="170" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="235" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="283" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="451" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="634" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15119" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="644" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E479036" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12144" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTA</genome_strand>
        <mrna_strand>TCT-TTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265848" ref_strand="+" ref_description="SGN-E265848 [cLEI-11-K22]">
      <seq>ctcttcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcangaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11845" stop="15227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12145" g_stop="12250" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="170" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="235" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="283" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="451" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="634" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15115" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="640" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E265848" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12145" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTG</genome_strand>
        <mrna_strand>CTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591010" ref_strand="+" ref_description="SGN-E591010 [44713]">
      <seq>cttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactgggaaaggtggtcattggaatggatgttgcagcatctgaaattttacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11847" stop="15765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12147" g_stop="12250" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="168" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="233" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="281" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="368" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="449" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="551" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="632" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="707" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="771" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15465" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="813" r_length="42" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E591010" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12147" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACT-GGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTG-AATTTTACGG</genome_strand>
        <mrna_strand>CTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAAATTTTACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570011" ref_strand="+" ref_description="SGN-E570011 [14528]">
      <seq>cttcactcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11847" stop="15059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12147" g_stop="12250" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="168" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="233" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="281" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="368" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="449" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14759" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="546" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E570011" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12147" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAA</genome_strand>
        <mrna_strand>CTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443051" ref_strand="+" ref_description="SGN-E443051 [cSTA-36-C23]">
      <seq>cttcactcttttctactatttctctcttcatagatccgatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11847" stop="14430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12147" g_stop="12250" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="168" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="233" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="281" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="368" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14130" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="418" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E443051" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12147" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGG</genome_strand>
        <mrna_strand>CTTCACTCTTTTCTACTATTTCTCTCTTCATAGATCCGATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287323" ref_strand="+" ref_description="SGN-E287323 [cLES-15-F17]">
      <seq>tcactcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11849" stop="15001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12149" g_stop="12250" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="166" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="231" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="279" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="366" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="447" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14701" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="486" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E287323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12149" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTA</genome_strand>
        <mrna_strand>TCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481756" ref_strand="+" ref_description="SGN-E481756 [cSTD-19-K18]">
      <seq>ctcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="15230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12152" g_stop="12250" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="163" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="228" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="276" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="546" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="627" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15117" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="635" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481756" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12152" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGAT</genome_strand>
        <mrna_strand>CTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214427" ref_strand="+" ref_description="SGN-E214427 [cLEC-77-B21]">
      <seq>ctcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcangaatttatgatccttcctgttggagctgctaattttcangaggccatgaagatgggctgtgaagtctatcaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="15219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12152" g_stop="12250" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="163" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="228" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="276" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="546" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14919" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="624" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214427" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12152" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</genome_strand>
        <mrna_strand>CTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTTCANGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557233" ref_strand="+" ref_description="SGN-E557233 [20966]">
      <seq>ctcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtgggatctcatgcttggaaacaaactcggcatgcacggaatttatgatccttcctgttggagctgtaatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="15179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12152" g_stop="12250" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="163" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="228" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="276" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="549" r_length="105" r_score="0.912"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.81"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14879" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="586" r_length="37" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E557233" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12152" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGT-GGATCTCATGC-CGGAAACAAACTCGCAATGCA-GGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</genome_strand>
        <mrna_strand>CTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGGATCTCATGCTTGGAAACAAACTCGGCATGCACG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTG-TAATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558575" ref_strand="+" ref_description="SGN-E558575 [17936]">
      <seq>ctcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaaagaagttggtattaccagtttcctgccttcaatgtgattaatggtggatctcatgctggaaaacaaactcgcaatgcaggaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12152" g_stop="12250" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="163" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="228" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="276" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="549" r_length="105" r_score="0.931"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14850" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="558" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E558575" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12152" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAAC-AAGAAGTTGGTATTACCAG-TTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGG-AAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATG</genome_strand>
        <mrna_strand>CTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAAGAAGTTGGTATTACCAGTTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAAACAAACTCGCAATGCAG.............................................................................GAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437766" ref_strand="+" ref_description="SGN-E437766 [cSTA-4-P14]">
      <seq>ctcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgctgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12152" g_stop="12250" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="163" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="228" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="276" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="363" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="444" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E437766" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12152" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>CTCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202412" ref_strand="+" ref_description="SGN-E202412 [cLEC-6-C13]">
      <seq>tcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11853" stop="15179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12153" g_stop="12250" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="162" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="227" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="275" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="362" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="443" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="545" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14879" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="583" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E202412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12153" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</genome_strand>
        <mrna_strand>TCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563372" ref_strand="+" ref_description="SGN-E563372 [1813]">
      <seq>gatcccccggctgcagaatcggcacgaggctcttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggnaatttatgaagcccttggaattgagggatggaggatctgactacnctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaagacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttggctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatccaatggtggatctcatgccggaaacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11852" stop="15052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12153" g_stop="12250" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="128" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="192" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="260" r_length="68" r_score="0.877"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="307" r_length="47" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="394" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="476" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14754" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="569" r_length="93" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E563372" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12153" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGG-AATTTACGAAGCCCTT-GAATTGAGGGATGGAGGATCTGACTAC-CTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTT-GCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGAT-TAATGGTGGATCTCATGCCGGAAACAAACT</genome_strand>
        <mrna_strand>TCTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNAATTTATGAAGCCCTTGGAATTGAGGGATGGAGGATCTGACTACNCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAA-...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCCAATGGTGGATCTCATGCCGGAAACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271237" ref_strand="+" ref_description="SGN-E271237 [cLEM-5-K4]">
      <seq>tcttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11853" stop="15003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12153" g_stop="12250" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="162" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="227" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="275" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="362" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="443" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14703" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="484" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12153" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACC</genome_strand>
        <mrna_strand>TCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209601" ref_strand="+" ref_description="SGN-E209601 [cLEC-54-A12]">
      <seq>tcttttctactatttatctgttcatagatctaatggcaactatcaaatccattaaagctcagtcagatctttgacagccgcgggaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgtcagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatagacgatctgactacctaggaaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11853" stop="13963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12153" g_stop="12250" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="163" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13663" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="219" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E209601" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12153" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTC-GTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGT</genome_strand>
        <mrna_strand>TCTTTTCTACTATTTATCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCAGTCAGATCTTTGACAGCCGCGGGAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGTCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATAGACGATCTGACTACCTAGGAAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705429" ref_strand="+" ref_description="SGN-E705429 [FA27AE05]">
      <seq>cttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11854" stop="15788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12154" g_stop="12250" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="161" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="226" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="274" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="361" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="442" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="544" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="625" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="700" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="763" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15488" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="827" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E705429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12154" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGA</genome_strand>
        <mrna_strand>CTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468106" ref_strand="+" ref_description="SGN-E468106 [cSTB-2-D5]">
      <seq>cttttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaacccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatcaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttgtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcangaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11854" stop="15044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12154" g_stop="12250" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="161" r_length="63" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="226" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="274" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="361" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="441" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14744" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="523" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E468106" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12154" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAA-CCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCG</genome_strand>
        <mrna_strand>CTTTTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCAT-CACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTT-GTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCANGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270021" ref_strand="+" ref_description="SGN-E270021 [cLEM-7-L18]">
      <seq>ttttctactatttctctgttcatagatctaatggcaactatgaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11855" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12155" g_stop="12250" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="160" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="273" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="360" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="441" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="543" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14868" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="570" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12155" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCT</genome_strand>
        <mrna_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATGAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329689" ref_strand="+" ref_description="SGN-E329689 [cTOD-3-D6]">
      <seq>ttttctactatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaagctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11855" stop="14980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12155" g_stop="12250" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="160" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="273" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="360" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="441" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14680" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="459" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E329689" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12155" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCT</genome_strand>
        <mrna_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAA.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272458" ref_strand="+" ref_description="SGN-E272458 [cLEM-19-N3]">
      <seq>ttttctactatttctctgttcatagatctaatggcagctatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11855" stop="14980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12155" g_stop="12250" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="160" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="273" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="360" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="441" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14680" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="459" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E272458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12155" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCT</genome_strand>
        <mrna_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAGCTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205384" ref_strand="+" ref_description="SGN-E205384 [cLEC-28-A5]">
      <seq>ttttgtactataaatctggtcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaagctgttaacaatgtcaactgaattattggccctgctcttgttggcatggacccaactgatcagactggtcttgattacttcatggttcatcagataaatggaactcaaaatgagtggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11869" stop="14276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12155" g_stop="12250" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="160" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="225" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="273" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13976" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="345" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205384" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12155" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGT</genome_strand>
        <mrna_strand>TTTTGTACTATAAATCTGGTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAA.....................................................................................GCTGTTAACAATGTCAACTGAATTATTGGCCCTGCTCTTGTTGGCATG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATTACTTCATGGTTCATCAGATAAATGGAACTCAAAATGAGTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573785" ref_strand="+" ref_description="SGN-E573785 [33150]">
      <seq>ttctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccaggtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattacgaagaaatatggtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11857" stop="15436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12157" g_stop="12250" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="158" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="223" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="271" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="358" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="439" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="542" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="623" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15136" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="650" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E573785" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12157" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCA-GTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAG</genome_strand>
        <mrna_strand>TTCTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTACGAAGAAATATGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585904" ref_strand="+" ref_description="SGN-E585904 [68369]">
      <seq>ctactatttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattacgacagaaatatggtcaggatgccacaaaatgtcggtgacgagggtggttttgctcctaatatccaggagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11859" stop="15489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12159" g_stop="12250" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="156" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="221" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="269" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="356" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="437" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="539" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="620" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="697" r_length="77" r_score="0.907"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15276" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="704" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E585904" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12159" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGA-AGAAATATGGTCAGGATGCCAC-AAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACA</genome_strand>
        <mrna_strand>CTACTATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTACGACAGAAATATGGTCAGGATGCCACAAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301279" ref_strand="+" ref_description="SGN-E301279 [cLEW-24-B2]">
      <seq>tactatttctctgttcatagatgtaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11860" stop="16730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12160" g_stop="12250" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="155" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="220" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="268" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13914" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="278" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13915" i_stop="16153" i_length="2239">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16154" g_stop="16167" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="292" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="344" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16430" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="370" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E301279" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12160" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13914"/>
          <exon e_start="16154" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTG</genome_strand>
        <mrna_strand>TACTATTTCTCTGTTCATAGATGTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256931" ref_strand="+" ref_description="SGN-E256931 [cLEG-44-O21]">
      <seq>actatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11861" stop="14455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12161" g_stop="12250" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="154" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="219" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="354" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14155" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="429" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E256931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12161" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTG</genome_strand>
        <mrna_strand>ACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246045" ref_strand="+" ref_description="SGN-E246045 [cLEF-54-I6]">
      <seq>tatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11863" stop="15219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12163" g_stop="12250" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="152" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="217" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="265" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="352" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="433" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="535" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14919" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="613" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E246045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12163" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</genome_strand>
        <mrna_strand>TATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271289" ref_strand="+" ref_description="SGN-E271289 [cLEM-5-L3]">
      <seq>tatttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11863" stop="15061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12163" g_stop="12250" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="152" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="217" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="265" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="352" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="433" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14761" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="532" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12163" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</genome_strand>
        <mrna_strand>TATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479603" ref_strand="+" ref_description="SGN-E479603 [cSTD-10-J9]">
      <seq>atttctctcttcattagatgcaatggcaactatcaaatccattaaagctcgtcagaatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctngtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgaggggtgggttttgctcctaatatccaggagaacagggaaggtcttgaattgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11864" stop="15597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12164" g_stop="12250" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="153" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="218" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="266" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="353" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="536" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="618" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="695" r_length="77" r_score="0.907"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15297" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="723" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E479603" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12164" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTTCA-TAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAG-ATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCT-GTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGA-GGGT-GGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCA</genome_strand>
        <mrna_strand>ATTTCTCTCTTCATTAGATGCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGAATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTNGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGGTGGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAGGGAAGGTCTTGAATTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477777" ref_strand="+" ref_description="SGN-E477777 [cSTD-1-B2]">
      <seq>atttctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgcccacaatgtcggtacgaggggtggttttgcttctaatatccaggagaacagggaaggtcttgaattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11864" stop="15596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12164" g_stop="12250" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="216" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="264" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="432" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="534" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="615" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="690" r_length="75" r_score="0.867"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="717" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E477777" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12164" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTC</genome_strand>
        <mrna_strand>ATTTCTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCCACAATGTCGGTACGAGGGGTGGTTTTGCTTCTAATATCCAG.....................................................................................GAGAACAGGGAAGGTCTTGAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209742" ref_strand="+" ref_description="SGN-E209742 [cLEC-52-G24]">
      <seq>atttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggcccatgaagatgggctgtgaaagctatcaccatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11864" stop="15221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12164" g_stop="12250" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="216" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="264" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="432" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="534" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14921" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="615" r_length="81" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E209742" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12164" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGG-CCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAA</genome_strand>
        <mrna_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCCATGAAGATGGGCTGTGAAAGCTATCACCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443958" ref_strand="+" ref_description="SGN-E443958 [cSTA-40-J24]">
      <seq>atttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11864" stop="14983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12164" g_stop="12250" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="216" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="264" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="432" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14683" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="453" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E443958" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12164" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGT</genome_strand>
        <mrna_strand>ATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202180" ref_strand="+" ref_description="SGN-E202180 [cLEC-7-J15]">
      <seq>atttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11864" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12164" g_stop="12250" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="216" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="264" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="432" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E202180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12164" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485752" ref_strand="+" ref_description="SGN-E485752 [cSTE-19-K6]">
      <seq>atttctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttacatggaactcccaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11864" stop="14416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12164" g_stop="12250" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="216" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="264" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14116" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="387" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E485752" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12164" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCT</genome_strand>
        <mrna_strand>ATTTCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTACATGGAACTCCCAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206225" ref_strand="+" ref_description="SGN-E206225 [cLEC-29-B24]">
      <seq>tttctctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11865" stop="15054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12165" g_stop="12250" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="150" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="215" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="263" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="431" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14754" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="523" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12165" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACT</genome_strand>
        <mrna_strand>TTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254865" ref_strand="+" ref_description="SGN-E254865 [cLEG-33-F2]">
      <seq>tttctctgttcatagatctaatggcagcgatgagttccattaaagctcgtgagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11865" stop="14293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12165" g_stop="12250" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="150" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="215" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="263" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E254865" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12165" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG</genome_strand>
        <mrna_strand>TTTCTCTGTTCATAGATCTAATGGCAGCGATGAGTTCCATTAAAGCTCGTGAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461475" ref_strand="+" ref_description="SGN-E461475 [cPRO-8-H11]">
      <seq>tctctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgagggtggttttgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11867" stop="15475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12167" g_stop="12250" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="148" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="213" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="261" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="429" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="531" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="612" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15175" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="678" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E461475" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12167" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCT</genome_strand>
        <mrna_strand>TCTCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGTGGTTTTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481606" ref_strand="+" ref_description="SGN-E481606 [cSTD-18-D24]">
      <seq>ctctctacatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11868" stop="15442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12168" g_stop="12250" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="147" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="212" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="260" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="347" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="428" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="530" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="611" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15142" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="644" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481606" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12168" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCC</genome_strand>
        <mrna_strand>CTCTCTACATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602151" ref_strand="+" ref_description="SGN-E602151 [55207]">
      <seq>tctcttcatagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11869" stop="15759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12169" g_stop="12250" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="146" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="211" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="259" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="346" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="427" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="610" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="685" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="748" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15459" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="783" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E602151" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12169" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATT</genome_strand>
        <mrna_strand>TCTCTTCATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207803" ref_strand="+" ref_description="SGN-E207803 [cLEC-32-H17]">
      <seq>tctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11869" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12169" g_stop="12250" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="146" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="211" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="259" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="346" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="427" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14855" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="543" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12169" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCT</genome_strand>
        <mrna_strand>TCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359259" ref_strand="+" ref_description="SGN-E359259 [cLHT-31-C17]">
      <seq>tctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccactgtcgaggttgatgtacatgtctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctcttgtcggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcagaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11869" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12169" g_stop="12250" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="146" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="211" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="259" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="346" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="427" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14853" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="541" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E359259" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12169" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATC</genome_strand>
        <mrna_strand>TCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACTGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTCGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAGAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205361" ref_strand="+" ref_description="SGN-E205361 [cLEC-25-H2]">
      <seq>ctgttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttaccaagcccttgaattgagggatggaggatctgactacctccgaaagggtgtttcgaacgctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11870" stop="14277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12170" g_stop="12250" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="145" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="210" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="258" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13977" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="331" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205361" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12170" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTT</genome_strand>
        <mrna_strand>CTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACCAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCCGAAAGGGTGTTTCGAAC.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731559" ref_strand="+" ref_description="SGN-E731559 [LA27CA06]">
      <seq>gttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11872" stop="15782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12172" g_stop="12250" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="143" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="208" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="256" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="424" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="526" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="607" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="682" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="745" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15482" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="803" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E731559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12172" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATG</genome_strand>
        <mrna_strand>GTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731642" ref_strand="+" ref_description="SGN-E731642 [LA27DA06]">
      <seq>gttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggatgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaactaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaacgtcttgaattgctcaagacagccattgagaaagcaggttacacttggaaaggtggtcattggaatggatgtttgcaccatctgaattttacggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11872" stop="15768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12172" g_stop="12250" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="143" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="208" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="256" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="424" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="526" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="607" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="682" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="746" r_length="64" r_score="0.952"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15468" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="791" r_length="45" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E731642" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12172" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACAC-TGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATG-TTGCAGCATCTGAATTTTACGGAAA</genome_strand>
        <mrna_strand>GTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACTAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAACGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTTGCACCATCTGAATTTTACGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572603" ref_strand="+" ref_description="SGN-E572603 [31782]">
      <seq>cttcatagatccaatggcaactatcaaatccacttaaagctcttcagatctttgacaggcgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgtttttaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacagactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaagggaggcccttgaagatgggctgtgaagtctatcaccatttgaaggctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11873" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12172" g_stop="12250" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="144" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="209" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="257" r_length="48" r_score="0.875"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="425" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="527" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="611" r_length="84" r_score="0.914"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15116" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="618" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E572603" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12172" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATAGATCTAATGGCAACTATCAAATCCA-TTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC-AA-GGAGG-CCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGA</genome_strand>
        <mrna_strand>CTTCATAGATCCAATGGCAACTATCAAATCCACTTAAAGCTCTTCAGATCTTTGACAGGCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTTTTAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAGACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAAGGGAGGCCCTTGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270096" ref_strand="+" ref_description="SGN-E270096 [cLEM-7-F15]">
      <seq>ttcatagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11873" stop="15044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12173" g_stop="12250" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="142" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="207" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="255" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="423" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14744" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="505" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12173" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCG</genome_strand>
        <mrna_strand>TTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559061" ref_strand="+" ref_description="SGN-E559061 [18499]">
      <seq>catagatccaatggcaactatcaaatccattaaagctcgttcagatctttgacaggcgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagccctttggaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgaggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11875" stop="15464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12175" g_stop="12250" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="141" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="208" r_length="67" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="256" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="424" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="526" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="607" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15165" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="663" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E559061" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12175" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCG-TCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCC-TT-GAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGG</genome_strand>
        <mrna_strand>CATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTTCAGATCTTTGACAGGCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTTGGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481760" ref_strand="+" ref_description="SGN-E481760 [cSTD-19-M6]">
      <seq>catagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11875" stop="15175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12175" g_stop="12250" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="140" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="205" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="253" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="340" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="421" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="523" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14875" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="557" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E481760" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12175" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATT</genome_strand>
        <mrna_strand>CATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448265" ref_strand="+" ref_description="SGN-E448265 [cSTS-2-O16]">
      <seq>catagatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11875" stop="15068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12175" g_stop="12250" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="140" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="205" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="253" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="340" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="421" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="523" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14855" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="537" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E448265" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12175" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCT</genome_strand>
        <mrna_strand>CATAGATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213794" ref_strand="+" ref_description="SGN-E213794 [cLEC-76-A10]">
      <seq>atagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaagccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccangagaacnaggaaggtcttgaattgctcaagacagccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11876" stop="15607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12176" g_stop="12250" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="139" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="204" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="252" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="339" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="522" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="603" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="678" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15307" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="716" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213794" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12176" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCAT</genome_strand>
        <mrna_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAAGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAN.....................................................................................GAGAACNAGGAAGGTCTTGAATTGCTCAAGACAGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212959" ref_strand="+" ref_description="SGN-E212959 [cLEC-72-E19]">
      <seq>atagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaaacaggaaggtcttgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11876" stop="15593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12176" g_stop="12250" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="139" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="204" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="252" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="339" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="522" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="603" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="678" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15293" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="702" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E212959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12176" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTG</genome_strand>
        <mrna_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAAACAGGAAGGTCTTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212090" ref_strand="+" ref_description="SGN-E212090 [cLEC-75-M3]">
      <seq>atagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgaatgaaggtggttttgctcctaatatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11876" stop="15482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12176" g_stop="12250" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="139" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="204" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="252" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="339" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="522" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="603" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15182" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="677" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E212090" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12176" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTG-ATGAGGGTGGTTTTGCTCCTAATATCC</genome_strand>
        <mrna_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGAATGAAGGTGGTTTTGCTCCTAATATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214712" ref_strand="+" ref_description="SGN-E214712 [cLEC-79-P5]">
      <seq>atagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11876" stop="14981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12176" g_stop="12250" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="139" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="204" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="252" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="339" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14681" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="439" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12176" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTG</genome_strand>
        <mrna_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324096" ref_strand="+" ref_description="SGN-E324096 [cTOC-3-B19]">
      <seq>atagatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11876" stop="14271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12176" g_stop="12250" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="139" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="204" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="252" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13971" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="319" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E324096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12176" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGT</genome_strand>
        <mrna_strand>ATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698368" ref_strand="+" ref_description="SGN-E698368 [FA06AD04]">
      <seq>agatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggcaaccccacagccgaggttgatgtacatatctcaaatggtgtgtttgccacagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttccaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11878" stop="14218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12178" g_stop="12250" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="137" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="202" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="250" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13918" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="264" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E698368" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12178" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCA</genome_strand>
        <mrna_strand>AGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGCAACCCCACAGCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCACAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCCAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273547" ref_strand="+" ref_description="SGN-E273547 [cLEN-6-F1]">
      <seq>agatctaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggcgtgtttgccagagctgctgctccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11878" stop="13947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12178" g_stop="12250" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="137" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13647" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="177" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E273547" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12178" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGA</genome_strand>
        <mrna_strand>AGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGCGTGTTTGCCAGAGCTGCTGCTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424532" ref_strand="-" ref_description="SGN-E424532 [STM-43-P21]">
      <seq>gatccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgcggttttattagtattttgaattctgaaaaagaagagagttctttttttaggctaggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatagagtttgagttttgcttttctccccatgttgtttggtgaaaaaactcgaggggaggcccgtacccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11879" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12179" g_stop="12250" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="136" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="201" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13767" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="211" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="255" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="307" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="364" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="683" r_length="319" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E424532" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424532" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12179" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13767"/>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>GATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGCGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTAGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459206" ref_strand="+" ref_description="SGN-E459206 [cPRO-27-M3]">
      <seq>atccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaatatggtcaggatgccacaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11880" stop="15450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12180" g_stop="12250" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="135" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="200" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="248" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="335" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="416" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="518" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="599" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15150" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="639" r_length="40" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E459206" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12180" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</genome_strand>
        <mrna_strand>ATCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAG-AATATGGTCAGGATGCCACAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304330" ref_strand="+" ref_description="SGN-E304330 [cLEX-12-K14]">
      <seq>tctctctctctctctatatgtgtatctctctctctgtctgtgttcatagatctagtggcctctatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgatccaagtggtgcatccaccggaatatacgaagcccttgaattgagggatggaggatctgactacctgggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgtgggcaaggacccaactgatcagactggtcttgataacttcatggctcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcatatgccatccttgctgtgtcactagctgtgtgtaaagctggcgctgctgccaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagtcggtattaccagttcctgccttcaatgcgattaatggaggatctcatgcccgaaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11838" stop="15054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12180" g_stop="12250" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="120" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="249" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="297" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="384" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="465" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14754" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="557" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E304330" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12180" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACT</genome_strand>
        <mrna_strand>ATCTAGTGGCCTCTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGATCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTGGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTGGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGCTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCATATGCCATCCTTGCTGTGTCACTAGCTGTGTGTAAAGCTGGCGCTGCTGCCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTCGGTATTACCAGTTCCTGCCTTCAATGCGATTAATGGAGGATCTCATGCCCGAAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455011" ref_strand="+" ref_description="SGN-E455011 [cSTS-25-E21]">
      <seq>tccaatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattganggatggangatctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11881" stop="13948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12181" g_stop="12250" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="134" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13648" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="175" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E455011" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12181" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGAC</genome_strand>
        <mrna_strand>TCCAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGANGGATGGANGATCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201243" ref_strand="+" ref_description="SGN-E201243 [cLEC-10-K10]">
      <seq>taatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaagaatttatgatccttcctgttggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11883" stop="15168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12183" g_stop="12250" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="132" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="197" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="245" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="332" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="413" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="515" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14868" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="542" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201243" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12183" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCT</genome_strand>
        <mrna_strand>TAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAA.............................................................................GAATTTATGATCCTTCCTGTTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308147" ref_strand="+" ref_description="SGN-E308147 [cLEY-14-C18]">
      <seq>taatggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11883" stop="15053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12183" g_stop="12250" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="132" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="197" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="245" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="332" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="413" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14753" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="504" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E308147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12183" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAAC</genome_strand>
        <mrna_strand>TAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204420" ref_strand="+" ref_description="SGN-E204420 [cLEC-13-D16]">
      <seq>atggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11885" stop="15026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12185" g_stop="12250" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="130" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="195" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="243" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="330" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="411" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14726" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="475" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E204420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12185" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTA</genome_strand>
        <mrna_strand>ATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479279" ref_strand="+" ref_description="SGN-E479279 [cSTD-9-G18]">
      <seq>gggcaacctaactcaaatccacttaaagctcgtcagctctttgacagccgtggtaacccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttgggctgtaacaagaagttgggtataccagttcctgcccttcatgtgattaatggtgggatctcatgctgggaaccaactcgcaatgcangaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11887" stop="15226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12186" g_stop="12250" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.785"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="134" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="199" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="247" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="334" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="415" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="518" r_length="103" r_score="0.853"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.84"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14925" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="602" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E479279" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12186" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAA-CTA--TCAAATCCA-TTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCC-CACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGT-GGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTT</genome_strand>
        <mrna_strand>GGGCAACCTAACTCAAATCCACTTAAAGCTCGTCAGCTCTTTGACAGCCGTGGTAACCCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGGCTGTAACAAGAAGTTGGGTATACCAGTTCCTGCCCTTCATGTGATTAATGGTGGGATCTCATGCTGGGAACCAACTCGCAATGCAN.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706037" ref_strand="+" ref_description="SGN-E706037 [FA28DC12]">
      <seq>ggcaactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactgggaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11887" stop="15786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12187" g_stop="12250" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="128" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="193" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="241" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="409" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="511" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="592" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="667" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="730" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15425" g_stop="15486" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="792" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E706037" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12187" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCT</genome_strand>
        <mrna_strand>GGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGGAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205079" ref_strand="+" ref_description="SGN-E205079 [cLEC-16-P16]">
      <seq>aactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcacgaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11890" stop="15000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12190" g_stop="12250" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="125" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="190" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="238" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="325" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="406" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14700" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="444" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205079" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12190" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATT</genome_strand>
        <mrna_strand>AACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCACGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272854" ref_strand="+" ref_description="SGN-E272854 [cLEM-25-I8]">
      <seq>aactatcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11890" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12190" g_stop="12250" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="125" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="190" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="238" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="325" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="406" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E272854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12190" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</genome_strand>
        <mrna_strand>AACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270186" ref_strand="+" ref_description="SGN-E270186 [cLEM-1-K19]">
      <seq>tcaaatccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11895" stop="14286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12195" g_stop="12250" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="120" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="185" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="233" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13986" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="315" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12195" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAG</genome_strand>
        <mrna_strand>TCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444564" ref_strand="+" ref_description="SGN-E444564 [cSTA-43-M6]">
      <seq>caaatccattaaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctatagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctctgaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggcgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgataggaatgttccattgtacaagcacattgctgatttggctggtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11896" stop="14987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12196" g_stop="12250" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="119" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="184" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="232" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="319" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="400" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14687" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="425" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E444564" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12196" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACA</genome_strand>
        <mrna_strand>CAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTATAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCTGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGCGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGATAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561203" ref_strand="+" ref_description="SGN-E561203 [17158]">
      <seq>atcattaagctcgtcagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagcattgagaaagcaggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11899" stop="15622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12199" g_stop="12250" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="114" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="179" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="227" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="314" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="395" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="497" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="578" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="653" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15322" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="705" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E561203" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12199" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTA</genome_strand>
        <mrna_strand>AT-CATTAA-GCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAG-CATTGAGAAAGCAGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560584" ref_strand="+" ref_description="SGN-E560584 [20260]">
      <seq>atccattaaagctcgtcagatctttgacagccgtggtatccccaccagttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttggaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggaggaacaaggaaggtcttgaattgctcaagacagccattgagaaagcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11899" stop="15619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12199" g_stop="12250" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="117" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="183" r_length="66" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="231" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="318" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="399" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="501" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="582" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="657" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15319" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="708" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E560584" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12199" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCA-CAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTT-GAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGA-GAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGG</genome_strand>
        <mrna_strand>ATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTATCCCCACCAGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204127" ref_strand="+" ref_description="SGN-E204127 [cLEC-27-M7]">
      <seq>tccattaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11900" stop="15043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12200" g_stop="12250" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="115" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="180" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="228" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="315" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="396" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14743" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="477" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E204127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12200" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCC</genome_strand>
        <mrna_strand>TCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206096" ref_strand="+" ref_description="SGN-E206096 [cLEC-29-G17]">
      <seq>ttaaagctcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11904" stop="15457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12204" g_stop="12250" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="111" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="176" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="224" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="311" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="392" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="494" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="575" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15157" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="623" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12204" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGAT</genome_strand>
        <mrna_strand>TTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440044" ref_strand="+" ref_description="SGN-E440044 [cSTA-14-F2]">
      <seq>ctcgtagatctttgacagccgtggtaaccccaccgttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgctccaagtggtgcatccaccggaatttatgaagcccttgaattgatggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggctaggacccaaccgatcagactggtcttgataacttcatggttcatgagttatatggaactcaaaacgagtggggttggtgcaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11910" stop="14289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12210" g_stop="12250" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="104" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="169" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="217" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13989" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E440044" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12210" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAA</genome_strand>
        <mrna_strand>CTCGT-AGATCTTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGCTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGATGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCTAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTATATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267825" ref_strand="+" ref_description="SGN-E267825 [cLEI-12-I21]">
      <seq>tcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11911" stop="14440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12211" g_stop="12250" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="104" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="169" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="217" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="304" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14140" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="364" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E267825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12211" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTC</genome_strand>
        <mrna_strand>TCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270830" ref_strand="+" ref_description="SGN-E270830 [cLEM-6-E2]">
      <seq>tcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11911" stop="14282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12211" g_stop="12250" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="104" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="169" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="217" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13982" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="295" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12211" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGC</genome_strand>
        <mrna_strand>TCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270691" ref_strand="+" ref_description="SGN-E270691 [cLEM-6-M16]">
      <seq>tcgtcagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaatgctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11911" stop="14277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12211" g_stop="12250" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="104" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="169" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="217" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13977" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="290" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270691" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12211" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTT</genome_strand>
        <mrna_strand>TCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAT.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203919" ref_strand="+" ref_description="SGN-E203919 [cLEC-17-D12]">
      <seq>cagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11915" stop="15177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12215" g_stop="12250" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="100" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="165" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="213" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="300" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="483" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14877" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="519" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E203919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12215" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</genome_strand>
        <mrna_strand>CAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204876" ref_strand="+" ref_description="SGN-E204876 [cLEC-14-B24]">
      <seq>cagatctttgacagccgtggtaaccccacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcatgaatgtgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11915" stop="14452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12215" g_stop="12250" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="100" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="165" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="213" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="300" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14152" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="372" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E204876" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12215" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCA</genome_strand>
        <mrna_strand>CAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCATGAATGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268941" ref_strand="+" ref_description="SGN-E268941 [cLEM-4-N12]">
      <seq>atctttgacagccgtggttaccccacagtccacgctgatgtacatatcttaaatggtgtgttcgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctagactaccttggaaagggtgttgcgaaagctggtaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11918" stop="15440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12218" g_stop="12250" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="97" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="163" r_length="66" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="211" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="298" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="379" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="481" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="562" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15140" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="593" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E268941" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12218" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCT-GACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATG</genome_strand>
        <mrna_strand>ATCTTTGACAGCCGTGGTTACCCCACAGTCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTACATATCTTAAATGGTGTGTTCGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTAGACTACCTTGGAAAGGGTGTTGCGAAA.....................................................................................GCTGGTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269657" ref_strand="+" ref_description="SGN-E269657 [cLEM-17-C7]">
      <seq>atctttgacagccgtggtaaccccacagtcaaggttgatgtacatatgtgaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11918" stop="15171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12218" g_stop="12250" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="97" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="162" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="210" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="297" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="378" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="480" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14871" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="510" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E269657" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12218" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCT</genome_strand>
        <mrna_strand>ATCTTTGACAGCCGTGGTAACCCCACAGTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACATATGTGAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477565" ref_strand="+" ref_description="SGN-E477565 [cSTD-1-E5]">
      <seq>tttgacagccgtggtaaccccaccgttgaggttgatgtaccatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgaggggtggttttgctcctaatatccaggaggacaaggaaggtcttgaattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="11921" stop="15596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12221" g_stop="12250" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="95" r_length="65" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="160" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="208" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="295" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="376" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="478" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="559" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="635" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15270" g_stop="15296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="662" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E477565" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12221" e_stop="12250"/>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAGCCGTGGTAACCCCACAGTCGAGGTTTGTTTTCATTCAGATCTCTCTTTTTTCAGATTTTTTTTGATGTTTTTTTATAGATTCTTTTCGATCTGTTTCAAGATTTGAACTTTTTGAGTTTTTTATGCTTACCCATTTGCTGATTTTGTTTAAATAATTTGTTGTTATAATGGGTTTTGTTTGGATTTCTGAATGGAGTTTGTTTGAGAGTGTTTGGTTTTGTTAGATTGGTTGTTGATGCAGATTAGTTGTGTTGTATTTGTTTCAAGATTCAAACTTTTTGAGTTTTTTTTAATGTTTATGTTTATCGATTTGCTGATTTTGCTTAGATTGTATGTTGCTGTTATGGGTTTTGTTTGGACTTTTAAATGGAGGTTGCAGAGTAGTTGTGTTGTATCTATTTGTTGCTGCTATAAGTTTTGTTTGGATTTTTGTAAAGATGTTTTTTTGAATAATTAGTTGGTTGTGTTGGATTGGTTATTGATGCTGATAAGTTTTGTTAAATCAGTTTGAACACGGAGGTGGATTCAAGATTTGATTTTTATGGGCTCAGACATGCTAGTTGTTGCAATAGTAGAGATGTTTTTCCTCAGGTGTATTGATTTGTTTGTTGTGTATCTATGCAGGTTGATGTA-CATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGA-GGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTC</genome_strand>
        <mrna_strand>TTTGACAGCCGTGGTAACCCCACCGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACCATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGGACAAGGAAGGTCTTGAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214946" ref_strand="+" ref_description="SGN-E214946 [cLEC-78-N7]">
      <seq>cgaggtttatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12549" stop="15218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12849" g_stop="12916" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="181" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="268" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="349" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="451" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14918" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="528" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214946" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12849" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTT</genome_strand>
        <mrna_strand>CGAGGTTTATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424587" ref_strand="-" ref_description="SGN-E424587 [STM-43-F14]">
      <seq>aggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgcggttttattagtattttgaattctgaaaaagaagagagttctttttttaggctaggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatatggataggttttgcttttctcccattaatagtgaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12551" stop="17219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12851" g_stop="12916" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="131" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13767" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="141" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="185" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="237" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="294" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="613" r_length="319" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E424587" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12851" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13767"/>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>AGGTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGCGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTAGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558518" ref_strand="+" ref_description="SGN-E558518 [17869]">
      <seq>gttgaggttgatgtacatgtctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttnaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12548" stop="15459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="70" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="135" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="183" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="270" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="351" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="453" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="534" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15159" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="584" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E558518" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGA</genome_strand>
        <mrna_strand>GTTGATGTACATGTCTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTNAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271707" ref_strand="+" ref_description="SGN-E271707 [cLEM-23-B6]">
      <seq>cacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12551" stop="15450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="74" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="139" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="187" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="274" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="355" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="457" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="538" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15150" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="579" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</genome_strand>
        <mrna_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207014" ref_strand="+" ref_description="SGN-E207014 [cLEC-33-J16]">
      <seq>cacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12551" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="74" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="139" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="187" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="274" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="355" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="457" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="538" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15117" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="546" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGAT</genome_strand>
        <mrna_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270322" ref_strand="+" ref_description="SGN-E270322 [cLEM-1-N8]">
      <seq>cacagtcgaggttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12551" stop="15219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12853" g_stop="12916" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="74" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="139" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="187" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="274" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="355" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="457" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14919" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="535" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E270322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12853" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</genome_strand>
        <mrna_strand>GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271899" ref_strand="+" ref_description="SGN-E271899 [cLEM-8-J8]">
      <seq>ttgatgtacatatctcaaatggtgtgtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaagctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12554" stop="15458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12854" g_stop="12916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="128" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="176" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="344" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="446" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="527" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15158" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="576" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271899" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12854" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATG</genome_strand>
        <mrna_strand>TTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAA.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448073" ref_strand="+" ref_description="SGN-E448073 [cSTS-1-L17]">
      <seq>ctcaaatggtgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacanatgtcggtgatgaaggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12567" stop="15595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12867" g_stop="12916" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="115" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="163" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="250" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="331" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="433" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="514" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="589" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15270" g_stop="15295" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="615" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E448073" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12867" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCT</genome_strand>
        <mrna_strand>CTCAAATGGTGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACANATGTCGGTGATGAAGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565913" ref_strand="+" ref_description="SGN-E565913 [4352]">
      <seq>tgtatttgctagagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12576" stop="15159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12876" g_stop="12916" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="106" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="154" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="241" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="322" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="424" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14859" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="442" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E565913" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12876" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCT</genome_strand>
        <mrna_strand>TGTATTTGCTAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553674" ref_strand="+" ref_description="SGN-E553674 [cTSC-1-N3]">
      <seq>gtttgccagagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12579" stop="16079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12879" g_stop="12916" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="103" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="151" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="238" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="319" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="421" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="502" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="577" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="640" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="718" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15610" g_stop="15779" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="888" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E553674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12879" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGA</genome_strand>
        <mrna_strand>GTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568058" ref_strand="+" ref_description="SGN-E568058 [12281]">
      <seq>atttgctagaagctgctgttccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctttgaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttggataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttggctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaattggtattaccagttcctgccttcaatgtgattaactggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaacggaggcatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12580" stop="15456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12879" g_stop="12916" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="104" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="152" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="240" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="322" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="424" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="505" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15156" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="552" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E568058" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12879" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCCAG-AGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTT-GATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTT-GCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAA-TGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAA-GGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</genome_strand>
        <mrna_strand>ATTTGCTAGAAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTTTGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAA-TTGGTATTACCAGTTCCTGCCTTCAATGTGATTAACTGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAACGGAGG-CATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747584" ref_strand="+" ref_description="SGN-E747584 [GI|5669647]">
      <seq>tgccgagctgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcgagctggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12582" stop="14279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12882" g_stop="12916" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="99" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="147" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13979" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="222" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E747584" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12882" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGG</genome_strand>
        <mrna_strand>TGCC-GAGCTGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCGAGCTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271138" ref_strand="+" ref_description="SGN-E271138 [cLEM-22-P23]">
      <seq>tgctgttccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaagctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12591" stop="14274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12891" g_stop="12916" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="91" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="139" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13974" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="209" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E271138" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12891" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</genome_strand>
        <mrna_strand>TGCTGTTCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAA.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254814" ref_strand="+" ref_description="SGN-E254814 [cLEG-33-K22]">
      <seq>tccaagtggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12597" stop="15456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12897" g_stop="12916" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="85" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="133" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="220" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="301" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="403" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="484" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15110" g_stop="15156" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="531" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E254814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12897" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</genome_strand>
        <mrna_strand>TCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480970" ref_strand="+" ref_description="SGN-E480970 [cSTD-16-C1]">
      <seq>tccaagtggtgcatccaccggaatttatgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="12597" stop="15226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12897" g_stop="12916" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="85" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="133" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="220" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="301" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="403" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14842" g_stop="14925" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="487" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E480970" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12897" e_stop="12916"/>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTGGTGCATCCACCGGTAATGATCTAGCTTTGTTCTTGTATATAGTGACTTTTTCAAACACTGATTGATTAGACTGTGTTGAAAATTGTATGTGCAGATGCGTAATTAGTTCGTTATTTAACTTGTGTAATCGAACTCAGAGTTTCTTGTTTGTTTGCTTGGAAATTATAGAGACTTCCTTTCAAGTGTGTATTTATTAAACTTCACCCTTTTGATCAGTTTATGTTCAGCTATAGATACTTGTTCTTCACTAAAAAGAATACATTTTTAGTAACAGCATGTCACTATTCTAAAACAAAAATACTCCCTCTGGTTTTAATTTGTTTGTATGGTTTTGACTGACCATGGAGTTTGGAGAGTTTTGAACCTTGTGGTCTTAAACTAATGATTTGTAGAATGTACCAAAATCTCGTTTAATCTTGTGGTCTTAAACACGGTGTTGAAAGTTGAAATTAAAGAGTTAGCAAAAAAGGAAGAGATATTTTTTTTAAACGTACTAAAAAAAGAAAGCGAGACAAACAAACAAATTGAAATGCTTGTAGCTCATCTGATCCACGGATTTTGCATATATCAGTTTGGGTGGAAATGTGAATCTTTGCTACTTTCTGTTATTTTGAACGCTGTTAACGTTCTTGGCAAATGTGTCCTTTTGTTATTACCCTTTGAGTTGAAAGGTAATGCGTTATCTTTACTTGTTCAATAATAGGAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTT</genome_strand>
        <mrna_strand>TCCAAGTGGTGCATCCACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTATGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554022" ref_strand="+" ref_description="SGN-E554022 [cTSC-2-P21]">
      <seq>ggtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13307" stop="15990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="78" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="126" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="213" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="294" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="396" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="477" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="552" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="615" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="693" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15610" g_stop="15690" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="774" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E554022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTT</genome_strand>
        <mrna_strand>GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318715" ref_strand="+" ref_description="SGN-E318715 [cTOB-9-J3]">
      <seq>gaggggtgcatcccaccggaatttaccgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcaccattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactctcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13307" stop="15221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="84" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="132" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="219" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="300" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="403" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14921" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="483" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E318715" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTA-CGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCA-CATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAA</genome_strand>
        <mrna_strand>GAATTTACCGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCTCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318616" ref_strand="+" ref_description="SGN-E318616 [cTOB-9-H11]">
      <seq>gtgcatccaccggaatttacgaagcccttgaattgagggatggaggatctgactacctctgaaagggtgtttccaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13307" stop="15189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13608" g_stop="13672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="77" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="125" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="212" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="293" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="395" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="443" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E318616" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13608" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATG</genome_strand>
        <mrna_strand>GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCTGAAAGGGTGTTTCCAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265444" ref_strand="+" ref_description="SGN-E265444 [cLEI-9-L11]">
      <seq>acggcgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaagaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13315" stop="15433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13611" g_stop="13672" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="110" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="197" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="278" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="380" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="461" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15133" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="485" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E265444" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13611" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGT</genome_strand>
        <mrna_strand>ACGGCGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAA.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213569" ref_strand="+" ref_description="SGN-E213569 [cLEC-71-F20]">
      <seq>tacgaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaangaaggtcttgaattgctcaagacagccttgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13313" stop="15788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13613" g_stop="13672" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="108" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="195" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="276" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="378" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="459" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="534" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="596" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15488" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="660" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213569" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13613" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGA</genome_strand>
        <mrna_strand>TACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAANGAAGGTCTTGAATTGCTCAAGACAGCC-TTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213988" ref_strand="+" ref_description="SGN-E213988 [cLEC-80-B8]">
      <seq>gaagcccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactnggaaaggtggtcattgggatggatgttgcagcatctgaaatttacngaaaaggacaatcttatgacctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13316" stop="15789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13616" g_stop="13672" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="105" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="192" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="273" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="375" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="456" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="531" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="595" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15489" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="660" r_length="65" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213988" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13616" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACT-GGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAA</genome_strand>
        <mrna_strand>GAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTNGGAAAG............................................................................................GTGGTCATTGGGATGGATGTTGCAGCATCTGAAATTTACNGAAAAGGACAATCTTATGACCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393762" ref_strand="+" ref_description="SGN-E393762 [TUS-14-A3]">
      <seq>cccttgaattgagggatggaggatctgactacctcgtaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcacactggtcttgataacttcatggttcatcagttagatggaactcacaatgagtggggttggtgcaaagaaaaacttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggcaacaaaaatttggtattaccagttcctgccttcgatgtgattaatggtggatcacttgccggaaacaaactcgcaatgcacgaatttatgatccttcctgttggatctgctaatttcacggaggggatgaagatgggctgagaagtctatcaccatttaaaagctgtgattattaagaaatatggtcaagatgccacaaatgtcagtgatgagggtggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13320" stop="15469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13620" g_stop="13672" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="101" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="188" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="269" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="371" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="452" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15169" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E393762" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13620" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTT</genome_strand>
        <mrna_strand>CCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGTAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCACACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCACAATGAGTGGGGTTGGTGCAAAGAAAAA.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGCAACAAAAATTTGGTATTACCAGTTCCTGCCTTCGATGTGATTAATGGTGGATCACTTGCCGGAAACAAACTCGCAATGCAC.............................................................................GAATTTATGATCCTTCCTGTTGGATCTGCTAATTTCACGGAGGGGATGAAGATGGGCTGAGAAGTCTATCACCATTTAAAA...........................................................................................................................................................................................GCTGTGATTATTAAGAAATATGGTCAAGATGCCACAAATGTCAGTGATGAGGGTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202284" ref_strand="+" ref_description="SGN-E202284 [cLEC-6-A12]">
      <seq>ccttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaaacaagttacactggaaaggtggtcattggaatggatgttgcagcatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13321" stop="15756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13621" g_stop="13672" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="100" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="268" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="370" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="451" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="526" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="589" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15456" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="621" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E202284" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13621" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGA</genome_strand>
        <mrna_strand>CCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAACAAGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407598" ref_strand="+" ref_description="SGN-E407598 [PPI-7-J12]">
      <seq>cttgaattgagggatggaggatctgactacctcggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtctagaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgctgcatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13322" stop="15756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13622" g_stop="13672" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="99" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="186" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="267" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="369" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="450" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="525" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="588" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15456" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="620" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E407598" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13622" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGA</genome_strand>
        <mrna_strand>CTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTAGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCTGCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263522" ref_strand="+" ref_description="SGN-E263522 [cLEG-60-O7]">
      <seq>ttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcatttggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacnagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13323" stop="16012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13623" g_stop="13672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="98" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="185" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="266" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="368" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="449" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="524" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="587" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="666" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15610" g_stop="15712" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="769" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E263522" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13623" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCA-TTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACC</genome_strand>
        <mrna_strand>TTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACNAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257994" ref_strand="+" ref_description="SGN-E257994 [cLEG-48-N15]">
      <seq>ttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcacgaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13323" stop="15221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13623" g_stop="13672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="98" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="185" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="266" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="368" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="449" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E257994" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13623" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG</genome_strand>
        <mrna_strand>TTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAC.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258119" ref_strand="+" ref_description="SGN-E258119 [cLEG-48-L9]">
      <seq>ttgaattgagggatggaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13323" stop="14291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13623" g_stop="13672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="98" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="185" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E258119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13623" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG</genome_strand>
        <mrna_strand>TTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328509" ref_strand="+" ref_description="SGN-E328509 [cTOC-23-O15]">
      <seq>gaggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaangaaggtcttgaattgctcaagacagccattgagaaagcangttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13338" stop="15792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13638" g_stop="13672" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="83" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="170" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="251" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="353" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="509" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="572" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15492" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="640" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E328509" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13638" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTT</genome_strand>
        <mrna_strand>GAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAANGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCANGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205745" ref_strand="+" ref_description="SGN-E205745 [cLEC-21-B24]">
      <seq>aggatctgactacctcagaaagggtgtttcgaaggctggtaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcatgaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcncaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13339" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13639" g_stop="13672" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="82" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="169" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="250" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="352" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="433" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15118" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="442" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205745" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13639" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATT</genome_strand>
        <mrna_strand>AGGATCTGACTACCTCAGAAAGGGTGTTTCGAAG.....................................................................................GCTGGTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCATGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCNCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201303" ref_strand="+" ref_description="SGN-E201303 [cLEC-4-E9]">
      <seq>aggatctgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13339" stop="15220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13639" g_stop="13672" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="82" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="169" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="250" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="352" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14920" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="431" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13639" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGA</genome_strand>
        <mrna_strand>AGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444595" ref_strand="+" ref_description="SGN-E444595 [cSTA-43-F5]">
      <seq>atctgactaccttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13456" stop="15226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13642" g_stop="13672" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="79" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="166" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="247" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="349" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14925" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="433" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E444595" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13642" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTT</genome_strand>
        <mrna_strand>ATCTGACTACCTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207907" ref_strand="+" ref_description="SGN-E207907 [cLEC-34-K22]">
      <seq>tgactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13345" stop="15480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13645" g_stop="13672" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="76" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="163" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="244" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="346" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="427" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15180" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="498" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13645" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATAT</genome_strand>
        <mrna_strand>TGACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252058" ref_strand="+" ref_description="SGN-E252058 [cLEG-8-N11]">
      <seq>gactacctcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggnaaaggctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccangaaaacaaagaatgtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13346" stop="15780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13646" g_stop="13672" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="75" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="162" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="243" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="345" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="430" r_length="85" r_score="0.901"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="568" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15480" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="624" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E252058" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13646" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACCTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGG---A-GCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTA</genome_strand>
        <mrna_strand>GACTACCTCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGNAAAGGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAN.....................................................................................GAAAACAAAGAATGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572491" ref_strand="+" ref_description="SGN-E572491 [31652]">
      <seq>cttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacgggtcacaaaagatatcaggtgaccaactcaaggatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13456" stop="15958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13652" g_stop="13672" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="69" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="156" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="237" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="339" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="495" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="558" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="636" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15610" g_stop="15658" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="685" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E572491" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13652" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTAT</genome_strand>
        <mrna_strand>CTTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGGTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212260" ref_strand="+" ref_description="SGN-E212260 [cLEC-75-L7]">
      <seq>tcggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgaaggtggttttgctcctaatatccaggagaaccaggaaggtcttgaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13353" stop="15595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13653" g_stop="13672" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="68" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="155" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="236" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="338" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="494" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15295" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="520" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E212260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13653" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCT</genome_strand>
        <mrna_strand>TCGGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAAGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACCAGGAAGGTCTTGAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401915" ref_strand="+" ref_description="SGN-E401915 [PPC-5-B6]">
      <seq>ttggaaagggtgtttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13456" stop="15481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13653" g_stop="13672" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="68" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="155" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="236" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="338" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="419" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15181" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="491" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E401915" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13653" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATC</genome_strand>
        <mrna_strand>TTGGAAAGGGTGTTTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480491" ref_strand="+" ref_description="SGN-E480491 [cSTD-14-G19]">
      <seq>ttggaaagggtgtttcaaaggccgttaacaatgtcaacctcaattattggcccttgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcactttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13456" stop="15456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13653" g_stop="13672" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="70" r_length="50" r_score="0.833"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.83"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="157" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="239" r_length="82" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="341" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="422" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15156" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="469" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E480491" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13653" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAA-CTCAATTATTGGCCC-TGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCAC-TTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</genome_strand>
        <mrna_strand>TTGGAAAGGGTGTTTCAAAG.....................................................................................GCCGTTAACAATGTCAACCTCAATTATTGGCCCTTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477588" ref_strand="+" ref_description="SGN-E477588 [cSTD-1-I9]">
      <seq>ggaaagggtgtttcaaaggcctgttaacaatgtcaacctcaattattggccctgcccctcactcggcaaggaccccaacgcgatcagacctggtcttgataaccttcattggttcatgagttagactggaacgtcaaaatgagtggggttggtgcaaagaaaagcttggtgccaaatgcgcattcttgctgtgtcacttgctgtgtgtaaagctggtgcctgctgtcaggaatgttccatttgtaccaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatgggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggcgtgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgangggtgggttttgctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13456" stop="15477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13655" g_stop="13672" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="70" r_length="52" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.79"/>
            <acceptor a_prob="0.986" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="164" r_length="94" r_score="0.816"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="250" r_length="86" r_score="0.840"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.83"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="353" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="435" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15177" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="505" r_length="70" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E477588" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13655" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGG-CTGTTAACAATGTCAA-CTCAATTATTGGCCCTG-CTCTTG-TTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGA-CCCAAC-TGATCAGA-CTGGTCTTGATAA-CTTCA-TGGTTCATCAGTTAGA-TGGAAC-TCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTG-CAAATGC-CATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCG-CTGCTGTCAGGAATGTGCCA-TTGTA-CAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAAT-GGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGC-TGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGA-GGGT-GGTTTTGCTCCTAA</genome_strand>
        <mrna_strand>GGAAAGGGTGTTTCAAAG.....................................................................................GCCTGTTAACAATGTCAACCTCAATTATTGGCCCTGCCCCTCACTCGGCAAG...................................................................................................GACCCCAACGCGATCAGACCTGGTCTTGATAACCTTCATTGGTTCATGAGTTAGACTGGAACGTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCCAAATGCGCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCCTGCTGTCAGGAATGTTCCATTTGTACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCGTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGANGGGTGGGTTTTGCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251829" ref_strand="+" ref_description="SGN-E251829 [cLEG-14-B9]">
      <seq>ggaaagggtgtttcgaaggctgttaacaatgtcaactcaattattgggcctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgacttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcacgaatttatgatccttactgttggagctgctaatttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13355" stop="15180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13655" g_stop="13672" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="66" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="153" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="234" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="336" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14880" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="375" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E251829" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13655" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAG</genome_strand>
        <mrna_strand>GGAAAGGGTGTTTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGGCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGACTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAC.............................................................................GAATTTATGATCCTTACTGTTGGAGCTGCTAATTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207852" ref_strand="+" ref_description="SGN-E207852 [cLEC-32-P2]">
      <seq>aaagggtgtttctaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcacgaatgtgccattgtacaagcacattgctgatttggctggttacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcagtgcacgaatttatgatccttcctggtggagctgctaatttcaaggaggccatgaatatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatagtcaagatgccacaaatgtcggtgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13453" stop="15460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13657" g_stop="13672" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="64" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="151" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="232" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="334" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="415" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15160" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="466" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207852" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13657" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGTGTTTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAG</genome_strand>
        <mrna_strand>AAAGGGTGTTTCTAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCACGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTTACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAGTGCAC.............................................................................GAATTTATGATCCTTCCTGGTGGAGCTGCTAATTTCAAGGAGGCCATGAATATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATAGTCAAGATGCCACAAATGTCGGTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207176" ref_strand="+" ref_description="SGN-E207176 [cLEC-30-I16]">
      <seq>ttcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13454" stop="15596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13666" g_stop="13672" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="55" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="142" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="223" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="325" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="406" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="481" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="508" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13666" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTC</genome_strand>
        <mrna_strand>TTCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456978" ref_strand="+" ref_description="SGN-E456978 [cPRO-2-C3]">
      <seq>ttcaaaggctgttaacaatgtcaactcaattattggccctgctctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttccatgtgattaatggtggatctcatgctggaaacaaactccccatgcaagaatttatgatccttcctggtggaactgctaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13456" stop="15176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13666" g_stop="13672" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="55" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="142" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="223" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="325" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14876" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="360" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E456978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13666" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTT</genome_strand>
        <mrna_strand>TTCAAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCCATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCCCCATGCAA.............................................................................GAATTTATGATCCTTCCTGGTGGAACTGCTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207817" ref_strand="+" ref_description="SGN-E207817 [cLEC-32-D4]">
      <seq>tcgaaggctgttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcaacatctgaattttacggaaaggacaaatcttatgacctgaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13452" stop="15793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13667" g_stop="13672" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85">
            <donor d_prob="0.891" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13758" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="54" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="141" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="222" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="324" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="405" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="543" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15425" g_stop="15493" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="612" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13667" e_stop="13672"/>
          <exon e_start="13758" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGGTTGGCGTTTCACTGCTAAGCTTTAGTTTGATGATTATACTGATCATTTTGATTAATATTTTTTAATGCTGTTCTTCCCGTGTAGGCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTC</genome_strand>
        <mrna_strand>TCGAAG.....................................................................................GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAACATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208067" ref_strand="+" ref_description="SGN-E208067 [cLEC-34-D17]">
      <seq>gttaacaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13461" stop="15592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13761" g_stop="13805" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="132" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="213" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="315" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="396" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="471" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15270" g_stop="15292" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="494" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E208067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13761" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATT</genome_strand>
        <mrna_strand>GTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210566" ref_strand="+" ref_description="SGN-E210566 [cLEC-35-L12]">
      <seq>acaatgtcaactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttgctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13465" stop="15219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13765" g_stop="13805" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="128" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="209" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="311" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14919" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="389" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E210566" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13765" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</genome_strand>
        <mrna_strand>ACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTGCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257029" ref_strand="+" ref_description="SGN-E257029 [cLEG-44-C24]">
      <seq>aatgtcgactcaattattggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaagtcttgaattgctcaagacagccattgagaaagcatgttacactggaaaggtggtcattggaatggatgttgcagcatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13467" stop="15756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13767" g_stop="13805" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="126" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="207" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="309" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="390" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="465" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="528" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15425" g_stop="15456" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="560" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E257029" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13767" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGA</genome_strand>
        <mrna_strand>AATGTCGACTCAATTATTGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAAGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCATGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260503" ref_strand="+" ref_description="SGN-E260503 [cLEG-54-A24]">
      <seq>tggccctgctcttgttggcaaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13484" stop="16097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13784" g_stop="13805" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="109" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="190" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="292" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="373" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="448" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="511" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="589" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15610" g_stop="15797" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="777" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E260503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13784" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCTGCTCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAA</genome_strand>
        <mrna_strand>TGGCCCTGCTCTTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604768" ref_strand="+" ref_description="SGN-E604768 [74907]">
      <seq>tctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13601" stop="15230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13793" g_stop="13805" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="100" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="181" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="364" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15110" g_stop="15117" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="372" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E604768" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13793" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGAT</genome_strand>
        <mrna_strand>TCTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451368" ref_strand="+" ref_description="SGN-E451368 [cSTS-12-D15]">
      <seq>ctcatcggcaaggacccaaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccattcttgctgtgtcacttgctgtgtgtaaagctggtgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaaattcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13601" stop="16066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13794" g_stop="13805" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="99" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="180" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="282" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="363" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="579" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15610" g_stop="15766" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="736" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E451368" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13794" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTAC</genome_strand>
        <mrna_strand>CTCATCGGCAAG...................................................................................................GACCCAACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAAATTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201847" ref_strand="+" ref_description="SGN-E201847 [cLEC-18-C15]">
      <seq>ttgttggcaaggacccaactgatcagactggtcttgatgagcttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13595" stop="15797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13795" g_stop="13805" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="99" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="180" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="282" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="363" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15425" g_stop="15497" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="574" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13795" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGGCAAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGAT-AACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAG</genome_strand>
        <mrna_strand>TTGTTGGCAAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATGAGCTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245835" ref_strand="+" ref_description="SGN-E245835 [cLEF-51-C11]">
      <seq>aaggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13603" stop="15192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13803" g_stop="13805" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13905" g_stop="13991" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="90" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="171" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14842" g_stop="14892" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="324" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E245835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13803" e_stop="13805"/>
          <exon e_start="13905" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTGTTGTATTTCTCCCGTTAATATCTTAATAGGCTATTTTTTTGTTAAGTTGCTATTATTGTTCATTTCTGACATACAAAGTATTACTATTTTCCAGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAG</genome_strand>
        <mrna_strand>AAG...................................................................................................GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213267" ref_strand="+" ref_description="SGN-E213267 [cLEC-71-C9]">
      <seq>aggacccaactgatcagactggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacnagtcatttgtgtccgagtaccctattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13603" stop="15990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13903" g_stop="13991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="170" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="272" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="353" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="428" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="491" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="569" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15690" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="650" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13903" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTT</genome_strand>
        <mrna_strand>AGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACNAGTCATTTGTGTCCGAGTACCCTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246478" ref_strand="+" ref_description="SGN-E246478 [cLEF-52-N5]">
      <seq>acccaactgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaatgagtggggttggtgcaaacaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcatgaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaacaagaaatatggtcaggatgccacacatgtccgtgatgagggtggatctgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13606" stop="15791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13906" g_stop="13991" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="167" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="350" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="425" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="488" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15491" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="555" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E246478" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13906" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACT</genome_strand>
        <mrna_strand>ACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAACAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCATGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAACAAGAAATATGGTCAGGATGCCACACATGTCCGTGATGAGGGTGGATCTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599682" ref_strand="+" ref_description="SGN-E599682 [52676]">
      <seq>aaccgatcagactggtcttgataacttcatggttcatgagttagatggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgttcgagtacctattgtntaatggaagatcatttaccaagatgactggagactatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13610" stop="16033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13910" g_stop="13991" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="163" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="265" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="346" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="484" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="562" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15734" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="681" r_length="119" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E599682" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13910" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGC</genome_strand>
        <mrna_strand>AACCGATCAGACTGGTCTTGATAACTTCATGGTTCATGAGTTAGATGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTTCGAGTA-CCTATTGTNT-AATGGAAGAT-CATTT-ACCAAGATGACT-GGAGA-CTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213558" ref_strand="+" ref_description="SGN-E213558 [cLEC-71-N15]">
      <seq>tggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcangtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagaactatgctaagctcactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13622" stop="16048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13922" g_stop="13991" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="151" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="253" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="334" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="409" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="472" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="550" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15748" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="689" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13922" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTG</genome_strand>
        <mrna_strand>TGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCANGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGAACTATGCTAAGCTCACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210283" ref_strand="+" ref_description="SGN-E210283 [cLEC-35-M21]">
      <seq>tggtcttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaagccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13622" stop="15480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13922" g_stop="13991" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="151" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="253" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="334" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15180" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="405" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E210283" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13922" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATAT</genome_strand>
        <mrna_strand>TGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAAGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737576" ref_strand="+" ref_description="SGN-E737576 [LC10BF04]">
      <seq>ttgataacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13627" stop="16399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13927" g_stop="13991" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="146" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="248" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="329" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="404" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="467" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="545" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="740" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="791" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16079" g_stop="16099" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="812" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E737576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13927" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTG</genome_strand>
        <mrna_strand>TTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703867" ref_strand="+" ref_description="SGN-E703867 [FA22CG06]">
      <seq>aacttcatggttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13632" stop="16401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13932" g_stop="13991" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="141" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="243" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="324" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="399" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="462" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="540" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="735" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="786" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16079" g_stop="16101" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="809" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E703867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13932" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGAC</genome_strand>
        <mrna_strand>AACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442206" ref_strand="+" ref_description="SGN-E442206 [cSTA-32-G12]">
      <seq>tacatggcccacgagtaaaaaggaactcaaaacgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaaggtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13637" stop="15441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13935" g_stop="13991" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.84"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="138" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="240" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="321" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15141" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="353" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E442206" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13935" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGC</genome_strand>
        <mrna_strand>TACATGGCCCACGAGTAAAAAGGAACTCAAAACGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAAGGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248216" ref_strand="+" ref_description="SGN-E248216 [cLEF-55-C1]">
      <seq>ttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13642" stop="15647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13942" g_stop="13991" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="131" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="233" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="314" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="389" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="452" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15440" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="468" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E248216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13942" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGG</genome_strand>
        <mrna_strand>TTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205160" ref_strand="+" ref_description="SGN-E205160 [cLEC-16-D17]">
      <seq>ttcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcatatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcatgaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaaaatgggctgtgacagtctatcaccatttgaaggctgtgattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13642" stop="15228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13942" g_stop="13991" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="131" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="233" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="315" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15120" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="326" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205160" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13942" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGA-AGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAA</genome_strand>
        <mrna_strand>TTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCATATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAT.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAAATGGGCTGTGACAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209232" ref_strand="+" ref_description="SGN-E209232 [cLEC-53-G5]">
      <seq>tcatcagttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13643" stop="15480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13943" g_stop="13991" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="130" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="232" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="313" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15180" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="384" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E209232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13943" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATAT</genome_strand>
        <mrna_strand>TCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265831" ref_strand="+" ref_description="SGN-E265831 [cLEI-11-E8]">
      <seq>ttagatggaactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcangtgaccaactcaaggacttatacaagtcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13650" stop="15970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13950" g_stop="13991" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="123" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="225" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="306" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="381" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="444" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="522" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15670" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="583" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E265831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13950" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTG</genome_strand>
        <mrna_strand>TTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCANGTGACCAACTCAAGGACTTATACAAGTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206659" ref_strand="+" ref_description="SGN-E206659 [cLEC-31-F16]">
      <seq>aactcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13658" stop="15594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13958" g_stop="13991" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="115" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="217" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="298" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="373" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15294" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="398" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13958" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGC</genome_strand>
        <mrna_strand>AACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477599" ref_strand="+" ref_description="SGN-E477599 [cSTD-1-K7]">
      <seq>ctcaaaatgaagtggggttggtgcaaagaaaagcttggtgcaaatgcccatccttgctgtgtcactttgctgtgtgtaaagctggcgctgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgcttcaatgtgattaatggtggatctcatgctggaaacaaactcgcatgcaggaatttatgatccttcctgttggagctgctaatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13660" stop="15178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13960" g_stop="13991" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="116" r_length="83" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="216" r_length="100" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14878" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="253" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E477599" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13960" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAATG-AGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATG-CCATCCTTGCTGTGTCAC-TTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCA</genome_strand>
        <mrna_strand>CTCAAAATGAAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCCATCCTTGCTGTGTCACTTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTG-CTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGC-ATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272026" ref_strand="+" ref_description="SGN-E272026 [cLEM-8-H9]">
      <seq>tcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13661" stop="16000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13961" g_stop="13991" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="112" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="214" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="295" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="370" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="433" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="511" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15700" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="602" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E272026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13961" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAG</genome_strand>
        <mrna_strand>TCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212699" ref_strand="+" ref_description="SGN-E212699 [cLEC-73-M18]">
      <seq>tcaaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaagtcttgaattgctcaagacagccattgagaaagcangttacactggaaaagtggtcattggaatggatgttgcagcatctgaattttacggaaaggacnaatcttatgacctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13661" stop="15792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13961" g_stop="13991" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="112" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="214" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="295" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="370" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="433" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15492" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="501" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E212699" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13961" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTT</genome_strand>
        <mrna_strand>TCAAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAAGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCANGTTACACTGGAAAA............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACNAATCTTATGACCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570532" ref_strand="+" ref_description="SGN-E570532 [15131]">
      <seq>aaaatgagtggggttggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctcgctgtcaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtccttggaatggatgttgcagcatctgaattttacggaaaggaccaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13663" stop="15780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13963" g_stop="13991" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="111" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="213" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="294" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="432" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15480" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="488" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E570532" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13963" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAGTGGGGTTGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCT-GCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTA</genome_strand>
        <mrna_strand>AAAATGAGTGGGGTTGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTCGCTGTCAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCCTTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACCAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206933" ref_strand="+" ref_description="SGN-E206933 [cLEC-33-I11]">
      <seq>tggtgcaaagaaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcangtgaccaactcaaggacttatacaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13779" stop="15967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13977" g_stop="13991" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="96" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="279" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="354" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="417" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="495" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15667" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="553" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206933" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13977" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCAT</genome_strand>
        <mrna_strand>TGGTGCAAAGAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCANGTGACCAACTCAAGGACTTATACAAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215055" ref_strand="+" ref_description="SGN-E215055 [cLEC-78-G12]">
      <seq>tggtgcaaataaaagcttggtgcaaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctctagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13779" stop="15790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13977" g_stop="13991" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="96" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="279" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="354" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="417" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15490" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="483" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E215055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13977" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAAAGAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAAC</genome_strand>
        <mrna_strand>TGGTGCAAATAAAAG.........................................................................................CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCTAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456516" ref_strand="+" ref_description="SGN-E456516 [cSTS-29-D2]">
      <seq>gaaaagcttggtgcaaatgccattcttgctgtgtcactttgctgtgtgtaaagctggtgctgctgtcaggaaatgttccattgtacaagcacaattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcangtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13779" stop="15994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13986" g_stop="13991" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89">
            <donor d_prob="0.636" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14081" g_stop="14161" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="89" r_length="83" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="192" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="273" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="348" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="411" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="489" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15610" g_stop="15694" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="574" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E456516" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13986" e_stop="13991"/>
          <exon e_start="14081" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTGTTACTATTTATGCCAAGTATAAAGTTAATTATTCTATCAAGAGAAGTTCATCTTTCATGAATATAACTGTATTGGCTTTTCTTCAGCTTGGTGCAAATGCCATCCTTGCTGTGTCAC-TTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGG-AATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCAC-ATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAA</genome_strand>
        <mrna_strand>GAAAAG.........................................................................................CTTGGTGCAAATGCCATTCTTGCTGTGTCACTTTGCTGTGTGTAAAGCTGGTGCTGCTGTCAGGAAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCANGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329348" ref_strand="+" ref_description="SGN-E329348 [cTOD-2-P18]">
      <seq>gcaaatgctttccttgctggtcacttgctgtggtaaagctggcactgctgtcaagaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtgtcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggacaacaaggaaagtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttactgaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgactgctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaaaatccatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13787" stop="16011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14087" g_stop="14161" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="176" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="257" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="332" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="395" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="473" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15711" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="575" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E329348" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14087" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGT-TCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGAC</genome_strand>
        <mrna_strand>GCAAATGCTTTCCTTGCTG-GTCACTTGCTGTG-GTAAAGCTGGCACTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTGTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GACAACAAGGAAAGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACTGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACTGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAAATCCATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247611" ref_strand="+" ref_description="SGN-E247611 [cLEF-42-B10]">
      <seq>aaatgccatccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtgaggaatgggccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgacttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttacgctcctaatatccacgagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcaccatctgaattatacggaaaggacaaatcttatgacctgaactttatagaatagagcaatgacggctcacacaatatatcacgtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaacatgactgggagacctatgctaaactcactgctgagattggggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13789" stop="16060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14089" g_stop="14161" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="256" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="394" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15760" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="623" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E247611" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14089" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGC</genome_strand>
        <mrna_strand>AAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTGAGGAATGGGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGACTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTACGCTCCTAATATCCAC.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCACCATCTGAATTATACGGAAAGGACAAATCTTATGACCTGAACTTTATAGAATAG...........................................................................................................AGCAATGACGGCTCACACAATATATCACGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAACATGACTGGGAGACCTATGCTAAACTCACTGCTGAGATTGGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210238" ref_strand="+" ref_description="SGN-E210238 [cLEC-40-L6]">
      <seq>gccattgttgctgtgacacttgctgtgtgtaaagctggcgctgctgtcaagaatgtgccattgtacaagcacattggtgatttggctggtaacaagaagttggtattaccagatcctgccttcaatgtgattaatggaggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctgatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaagaagggcttgaattgctcaagacagccattgagaaagcaggttacactggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13793" stop="15631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14093" g_stop="14161" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="252" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="327" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15331" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="389" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E210238" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14093" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAA</genome_strand>
        <mrna_strand>GCCATTGTTGCTGTGACACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAAGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGGTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGATCCTGCCTTCAATGTGATTAATGGAGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTGATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAAGAAGGGCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201053" ref_strand="+" ref_description="SGN-E201053 [cLEC-5-N22]">
      <seq>catccttgctgtgtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13795" stop="15450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14095" g_stop="14161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="250" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15150" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="291" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14095" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</genome_strand>
        <mrna_strand>CATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556920" ref_strand="+" ref_description="SGN-E556920 [cTSD-1-B24]">
      <seq>gtcacttgctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13807" stop="16635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14107" g_stop="14161" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="157" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="238" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="313" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="376" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="454" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="649" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="700" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="789" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="841" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="16405" g_stop="16429" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="866" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E556920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14107" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTT</genome_strand>
        <mrna_strand>GTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480891" ref_strand="+" ref_description="SGN-E480891 [cSTD-15-P11]">
      <seq>tgctgtgtgtaaagccggcgctgctgtcaggaacgttccattgtaccaagcacattgctgatttggctggtaacaagaagttggtatttaccagttcctgccttcaatgtgattaatggtggatctcatgcctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgctgcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgtcggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgncatgctcttcttcttcaagttaaccaaatcggcagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13813" stop="16295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14113" g_stop="14161" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="235" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="310" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="373" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="451" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="646" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="697" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16079" g_stop="16098" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="717" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E480891" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14113" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTA-CAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATT-ACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCC-GGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGT</genome_strand>
        <mrna_strand>TGCTGTGTGTAAAGCCGGCGCTGCTGTCAGGAACGTTCCATTGTACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCTGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTCGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGNCATGCTCTTCTTCTTCAA......................................................................................GTTAACCAAATCGGCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253016" ref_strand="+" ref_description="SGN-E253016 [cLEG-25-J10]">
      <seq>ctgtgtgtaaagctggcgctgctgtcaggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13815" stop="16072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14115" g_stop="14161" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="149" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="230" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="305" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="368" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="446" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15772" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="609" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E253016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14115" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTG</genome_strand>
        <mrna_strand>CTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576641" ref_strand="+" ref_description="SGN-E576641 [59891]">
      <seq>gtaaagctggcgctgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacgggaaggacaagtcttatgatctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtcagagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagatcaccactgagattggggagcaagtacagattgttggagatgaccttcttgtcaccaaccctaagagggtcgccaaagcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgaagagtatgaaagctgtcgaagaatgtctaagaagggctgggttgggggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13821" stop="16449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14121" g_stop="14161" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="143" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="224" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="362" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="440" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="635" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="686" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16079" g_stop="16151" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="763" r_length="77" r_score="0.753"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E576641" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14121" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCG-AGAGTATTGAAGCTGT-GAAG-ATGTCCAAGAA-GGCAGGTTGGGGTGTAA</genome_strand>
        <mrna_strand>GTAAAGCTGGCGCTGCTGTTAGGAATGTTCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGGAAGGACAAGTCTTATGATCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCAGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGATCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAAGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAAGAGTATGAAAGCTGTCGAAGAATGTCTAAGAAGGGCTGGGTTGGGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211985" ref_strand="+" ref_description="SGN-E211985 [cLEC-66-H5]">
      <seq>aggaatgtgccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="13841" stop="16064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14141" g_stop="14161" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="123" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="204" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="279" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="342" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="420" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15610" g_stop="15764" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="575" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E211985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14141" e_stop="14161"/>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGTGCCATTGTACAAGGTATACAGAGAATCACTTCTTGTTCGAGTGTCTGACTTCCCGAGTAGTTGTCTTTTGTATATTAGGCAGAAAATGTTTACGTTAATATTTTGTGCTTGTGAAGAATGATGTCTCACTTTTACTTTAGTTATTTCGTAGGATGATTTATCTTGATTGTTTAAACAGTAGTCAAGAGAGGGATTCATTGGTTTTCATGGAGTCCATGCACATTCTTTGGATTTATCTACACCCTAAGGCCTAAGCCTTGCATCGCTATTGAACTATTGCCAATTGGCAAGGCAGAAACCATATGAACCTTTAATCTTCCCCATGTTTACTGTTCCTATATGTGACTCACGTTCCTCCCACCCCAATGCAAAAAATAAAATAGGAGATAAAATAAATTCCACCATTTGATTCTCTATTACCTAAAGGCTACTAGGACAAATTAAGTTTCTAGTTGCAATTGGATTAATCTGCGATCATGTGGTTACTTGTATATATTGCCTCCTCTCTTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGT</genome_strand>
        <mrna_strand>AGGAATGTGCCATTGTACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200869" ref_strand="+" ref_description="SGN-E200869 [cLEC-5-M23]">
      <seq>tttgcagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14356" stop="15957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14656" g_stop="14764" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="190" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="265" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="328" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15657" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="454" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E200869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14656" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTA</genome_strand>
        <mrna_strand>TTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206600" ref_strand="+" ref_description="SGN-E206600 [cLEC-31-I16]">
      <seq>tttgcagcacattgctgatttggctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14356" stop="15930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14656" g_stop="14764" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="190" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="265" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="328" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15630" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="427" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E206600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14656" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAG</genome_strand>
        <mrna_strand>TTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587621" ref_strand="+" ref_description="SGN-E587621 [41157]">
      <seq>tgctgttaggaatgttccattgtacaagcacattgctgatttggctggtaacaagaagttggtattaccagtacctgccttcaatgtgatcaatggtggatctcatgccggaaacaaactggcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacgggaaggacaagtcttatgatctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtcagagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagatcaccactgagattggggagcaagtacagattgttgggagatgaccttcttgttcaccaaaccctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14352" stop="16082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="130" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="211" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="286" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="349" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="427" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="625" r_length="198" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E587621" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTG-TCGGTGATGACCTTCTTG-TCACC-AACCCTAAG</genome_strand>
        <mrna_strand>CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTACCTGCCTTCAATGTGATCAATGGTGGATCTCATGCCGGAAACAAACTGGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGGAAGGACAAGTCTTATGATCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCAGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGATCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGGAGATGACCTTCTTGTTCACCAAACCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469024" ref_strand="+" ref_description="SGN-E469024 [cSTB-10-M19]">
      <seq>gtaaagctggcgcctgctgtcaagaatgttccattgtaccaagcacattgctgatttggctggtaaccaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgcctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggcctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccacgagaacaaggaaagtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgctgcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14349" stop="15973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="147" r_length="104" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="229" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="304" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="367" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="445" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15673" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="509" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E469024" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGCTGATTTGGCTGGTAA-CAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCC-GGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGG-CTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGT</genome_strand>
        <mrna_strand>CACATTGCTGATTTGGCTGGTAACCAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAC.....................................................................................GAGAACAAGGAAAGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCTGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476961" ref_strand="+" ref_description="SGN-E476961 [cSTB-46-D10]">
      <seq>cgttgggcaagcacattgctgattcggctggtaacaagaagttggtattaccaggtcctgccttcaaagtgattaatgggggatctcatgctggaaacaaactcgtattgcaagaatttatgatccttactgctggagctgctaatgtcaaggacgccatcaagatgggctgggaagtctatcaccatttgaagactgtgattaacaacaaatatggtcaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14359" stop="15441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14663" g_stop="14764" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="194" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15141" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="226" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E476961" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14663" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGC</genome_strand>
        <mrna_strand>CACATTGCTGATTCGGCTGGTAACAAGAAGTTGGTATTACCAGGTCCTGCCTTCAAAGTGATTAATGGGGGATCTCATGCTGGAAACAAACTCGTATTGCAA.............................................................................GAATTTATGATCCTTACTGCTGGAGCTGCTAATGTCAAGGACGCCATCAAGATGGGCTGGGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................ACTGTGATTAACAACAAATATGGTCAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267619" ref_strand="+" ref_description="SGN-E267619 [cLEI-8-B10]">
      <seq>gctggtaacaagaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaacatgggctgcgaagtctatcaccattggaaggctgtgattaataataaatatcgacctgatgccacaaatgtcggtgatgagggtggttttgctcctaatatccacgagaacaaggaaggtcttgagttgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14378" stop="16044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14678" g_stop="14764" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="168" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="243" r_length="75" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="306" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="384" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15744" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="519" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E267619" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14678" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACT</genome_strand>
        <mrna_strand>GCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAACATGGGCTGCGAAGTCTATCACCATTGGAAG...........................................................................................................................................................................................GCTGTGATTAATAATAAATATCGACCTGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAC.....................................................................................GAGAACAAGGAAGGTCTTGAGTTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209398" ref_strand="+" ref_description="SGN-E209398 [cLEC-53-B23]">
      <seq>agaagttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14388" stop="15806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14688" g_stop="14764" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="158" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="233" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="296" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="374" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15617" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="382" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E209398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14688" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGA</genome_strand>
        <mrna_strand>AGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475003" ref_strand="+" ref_description="SGN-E475003 [cSTB-38-N19]">
      <seq>gttggtattaccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14392" stop="16089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14692" g_stop="14764" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="154" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="229" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="370" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15789" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="550" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E475003" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14692" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTT</genome_strand>
        <mrna_strand>GTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479271" ref_strand="+" ref_description="SGN-E479271 [cSTD-9-E24]">
      <seq>cgagtgccagttcctgccttcaatgtgattaatgggtggatctcatgcctggaaacaaacctcgcaatggcagggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaaagaaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgcagcatctgaattttacggaaaggacaaatcttatgacctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgacccttcgtgaaataacaagcagactcgaaacantnnttgttttgtgaaggtttattagtattttgaattctgaaaagaagagagttctttttttaggcttggtgactgtaaaactttatatgcaagtttgtactatgttctaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14398" stop="17180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14696" g_stop="14764" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.797"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.78"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="155" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="232" r_length="77" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="295" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15487" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="358" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15488" i_stop="16300" i_length="813">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16301" g_stop="16323" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="381" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="438" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16880" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="757" r_length="319" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E479271" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14696" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15487"/>
          <exon e_start="16301" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTACCAGTTCCTGCCTTCAATGTGATTAAT-GGTGGATCTCATGCC-GGAAACAAA-CTCGCAAT-GCA-GGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAG-AAG-AAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGA-CCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAA</genome_strand>
        <mrna_strand>CGAGTGCCAGTTCCTGCCTTCAATGTGATTAATGGGTGGATCTCATGCCTGGAAACAAACCTCGCAATGGCAGG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAAGAAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCCTTCGTGAAATAACAAGCAGACTC-GAAACANTNNTTGTTTTGTGAAGGTTTATTAGTATTTTGAATTCTGAAAAG---AAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTT-ATATGCAAGTTTGTACTATGTTCTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479259" ref_strand="+" ref_description="SGN-E479259 [cSTD-9-C24]">
      <seq>cgaggccagttcctgcccttcaatgtgattaatgggtggacctcatgctggaaacaaactcgcaatgcaggaatttatgaatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgcagcatctgaattttacggaaaggacaaatcttatgacctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaaggaactcgatcagaggctgtttatgcangagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14402" stop="16959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14697" g_stop="14764" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="152" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="227" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15488" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="354" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15489" i_stop="16301" i_length="813">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16302" g_stop="16323" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="376" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="433" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16659" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="537" r_length="104" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E479259" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14697" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15488"/>
          <exon e_start="16302" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACCAGTTCCTGCC-TTCAATGTGATTAAT-GGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATG-ATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAG-AGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</genome_strand>
        <mrna_strand>CGAGGCCAGTTCCTGCCCTTCAATGTGATTAATGGGTGGACCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGAATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAAGGAACTC-GATCAGAGGCTGTTTATGCANGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428127" ref_strand="+" ref_description="SGN-E428127 [STM-49-D8]">
      <seq>ccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgcagcatctgaattttacggaaaggacaaatcttatgacctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatggtctaattaatatttttgatggttttgcttttttctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14402" stop="17204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14702" g_stop="14764" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="144" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="219" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="282" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15484" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="342" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15485" i_stop="16297" i_length="813">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16298" g_stop="16323" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="368" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="425" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16904" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="769" r_length="344" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="786"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E428127" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14702" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15484"/>
          <exon e_start="16298" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATA-TTTTGATGGTTTTGGTTTTTTC</genome_strand>
        <mrna_strand>CCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG--AA-AAAGAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGGTCTAATTAATATTTTTGATGGTTTTGCTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478914" ref_strand="+" ref_description="SGN-E478914 [cSTD-7-N1]">
      <seq>ccagttcctgccttcaatgtgattaatggtggatctcatgctggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgcagcatctgaattttacggaaaggacaaatcttatgacctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaagtcagagcgtctcgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14402" stop="16751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14702" g_stop="14764" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="144" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="219" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="282" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15487" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="345" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15488" i_stop="16300" i_length="813">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16301" g_stop="16323" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="368" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16451" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="415" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E478914" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14702" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15487"/>
          <exon e_start="16301" e_stop="16323"/>
          <exon e_start="16405" e_stop="16451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAA</genome_strand>
        <mrna_strand>CCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCTGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAAGTCAGAGCGTCTCGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251927" ref_strand="+" ref_description="SGN-E251927 [cLEG-14-O1]">
      <seq>cagttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14403" stop="15934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14703" g_stop="14764" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="143" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="218" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15634" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="384" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E251927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14703" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATAT</genome_strand>
        <mrna_strand>CAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338648" ref_strand="+" ref_description="SGN-E338648 [cTOE-15-L7]">
      <seq>ttcctgccttcaatgtgattaatggtggatctcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14406" stop="16090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14706" g_stop="14764" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="140" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="215" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="278" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="356" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15790" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="537" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E338648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14706" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTG</genome_strand>
        <mrna_strand>TTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210090" ref_strand="+" ref_description="SGN-E210090 [cLEC-40-K22]">
      <seq>ttcaacgtcatcaatggtgggtcccatgctggaaacaaacttgcaatgcaggaatttatgattcttcctgttggagcttctagttttaaggaggccatgaagatgggctgtgaagtgtatcaccatttgaaggctgtgattaagaagaaatatggccaggatgcaacaaatgttggtgatgagggtggtttcgctcctaatatccaggagaacaaggagggtcttgaattgctcaagactgccatcgaaaaagcaggttatactggaaaagttgtcatcggaatggatgttgcagcatctgaattctatggaaaggacaaaacttatgatttgaacttcaaagaagagaacaacaatggttcccaaaagatctcaggtgaccagctcaaagatttgtacaagtcatttgtgtctgagtaccctattgtttcgatagaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgaaattgggcagaaagtacaaattgtaggagatgaccttctcgtcaccaatcctaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14537" stop="16104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14714" g_stop="14764" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.924" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="132" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="270" r_length="63" r_score="0.905"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="348" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.936" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="543" r_length="195" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E210090" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14714" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG</genome_strand>
        <mrna_strand>TTCAACGTCATCAATGGTGGGTCCCATGCTGGAAACAAACTTGCAATGCAG.............................................................................GAATTTATGATTCTTCCTGTTGGAGCTTCTAGTTTTAAGGAGGCCATGAAGATGGGCTGTGAAGTGTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGCCAGGATGCAACAAATGTTGGTGATGAGGGTGGTTTCGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAGGGTCTTGAATTGCTCAAGACTGCCATCGAAAAAGCAGGTTATACTGGAAAA............................................................................................GTTGTCATCGGAATGGATGTTGCAGCATCTGAATTCTATGGAAAGGACAAAACTTATGATTTGAACTTCAAAGAAGAG...........................................................................................................AACAACAATGGTTCCCAAAAGATCTCAGGTGACCAGCTCAAAGATTTGTACAAGTCATTTGTGTCTGAGTACCCTATTGTTTCGATAGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAAATTGGGCAGAAAGTACAAATTGTAGGAGATGACCTTCTCGTCACCAATCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205103" ref_strand="+" ref_description="SGN-E205103 [cLEC-16-K1]">
      <seq>ggatctcatgccgtaaacaaactcgcaatgcaagaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggcgatgagggtggttttgctcctaatatccaggagaacacggaaggtcttgaattgctcacgacagccattgacaaggcaggttacactggaaaggcggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgaccgctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14432" stop="15971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="14764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="114" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="189" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="330" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15671" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="392" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205103" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGT</genome_strand>
        <mrna_strand>GGATCTCATGCCGTAAACAAACTCGCAATGCAA.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGCGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACACGGAAGGTCTTGAATTGCTCACGACAGCCATTGACAAGGCAGGTTACACTGGAAAG............................................................................................GCGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACCGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268957" ref_strand="+" ref_description="SGN-E268957 [cLEI-16-G15]">
      <seq>tcatgccggaaacaaactcgcaatgcaggaatttatgatccttcctgttggagctgctaattttaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcatcatctgaattttaccgagaggacaaatcttatgacctgaacttcaaagaagagagcgatgacggctcacaaaagatatcaggtgaccaacttaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattggagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14437" stop="16064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14737" g_stop="14764" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="109" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="184" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="247" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="325" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15764" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="480" r_length="155" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E268957" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14737" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCCGGAAACAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGT</genome_strand>
        <mrna_strand>TCATGCCGGAAACAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTTAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCATCATCTGAATTTTACCGAGAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCGATGACGGCTCACAAAAGATATCAGGTGACCAACTTAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGGAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450686" ref_strand="+" ref_description="SGN-E450686 [cSTS-10-I11]">
      <seq>caaactcgcaatgcaggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgctgcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgtcggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14449" stop="16428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14749" g_stop="14764" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14842" g_stop="14922" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="97" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="172" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="235" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="313" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="508" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="559" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16079" g_stop="16129" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="610" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E450686" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14749" e_stop="14764"/>
          <exon e_start="14842" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCGCAATGCAGGTATGCCATTAGTTTGCGTCAACTATGCATCCGTGTGCTCTTTACTAGAACGATTCTCATTAGTAGTTATCTTGCAGGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCC</genome_strand>
        <mrna_strand>CAAACTCGCAATGCAG.............................................................................GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCTGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTCGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452140" ref_strand="+" ref_description="SGN-E452140 [cSTS-15-F2]">
      <seq>ggaatttatgatccttcctgttggagctgctaatttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgttggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttgggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14541" stop="16608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14841" g_stop="14922" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="220" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="298" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="493" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="544" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="634" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16272" g_stop="16308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="671" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E452140" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14841" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTT-GGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCT</genome_strand>
        <mrna_strand>GGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445962" ref_strand="+" ref_description="SGN-E445962 [cSTA-19-O14]">
      <seq>atttcaaggaggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacgggaaggacaagtcttatgatctgaacttcaaagaagagagcaatgacggctcacaaaagatatcatgtgaccaactcaaggatttgtacaagtcatttgtgtcagagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagatcaccactgagattggggagcaagtacagattgttggagatgaccttcttgtcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14573" stop="16095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14873" g_stop="14922" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="125" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="188" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="266" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15795" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="452" r_length="186" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E445962" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14873" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACC</genome_strand>
        <mrna_strand>ATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGGAAGGACAAGTCTTATGATCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCATGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCAGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGATCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGATGACCTTCTTGTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214639" ref_strand="+" ref_description="SGN-E214639 [cLEC-79-C24]">
      <seq>aggccatgaagatgggctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacnaatcaagactggagctccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14582" stop="16730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14882" g_stop="14922" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="116" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="179" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="257" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="452" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="503" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="592" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="644" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16405" g_stop="16430" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="670" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14882" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTG</genome_strand>
        <mrna_strand>AGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACNAATCAAGACTGGAGCTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428128" ref_strand="-" ref_description="SGN-E428128 [STM-49-D8]">
      <seq>tgggctgtgaagtctatcaccatttgaagtctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgacgagggtggttttgctcntaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgcagcatctgaattttacggaaaggacaaatcttatgacctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatattttgatggtatactttttctcaaaaaaaaaaaatttgattttggtaaactcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14594" stop="17194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14894" g_stop="14922" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="104" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="167" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15487" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="230" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15488" i_stop="16300" i_length="813">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16301" g_stop="16323" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="253" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16890" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="641" r_length="331" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="668"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E428128" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428128" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14894" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15487"/>
          <exon e_start="16301" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATG</genome_strand>
        <mrna_strand>TGGGCTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................TCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCNTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336004" ref_strand="+" ref_description="SGN-E336004 [cTOE-6-P7]">
      <seq>ctgtgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14598" stop="16060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14898" g_stop="14922" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="163" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="241" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15760" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="392" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E336004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14898" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGC</genome_strand>
        <mrna_strand>CTGTGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263800" ref_strand="+" ref_description="SGN-E263800 [cLEG-60-N18]">
      <seq>tgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgnctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccangctgttgaggatcgaagaaggaactcgatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14601" stop="16933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14901" g_stop="14922" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="97" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="238" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="433" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="484" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="573" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="626" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="684" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16555" g_stop="16633" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="763" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E263800" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14901" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTG-CTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCA-GGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAG-AGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACT</genome_strand>
        <mrna_strand>TGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGNCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCANG.............................................................................................CTGTTGAGGATCGAAGAAGGAACTC-GATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254922" ref_strand="+" ref_description="SGN-E254922 [cLEG-33-C10]">
      <seq>tgaagtctatcaccatttgaaggctgtgattaataagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagttcagattgtcggtgatgaccttcttgtcaccaaccctaaaagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaagggtaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14601" stop="16295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14901" g_stop="14922" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="97" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="238" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="433" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="484" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16088" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="494" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E254922" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14901" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAA</genome_strand>
        <mrna_strand>TGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAATAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTTCAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAA.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GGTAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262192" ref_strand="+" ref_description="SGN-E262192 [cLEG-58-J22]">
      <seq>tgaagtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14601" stop="16080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14901" g_stop="14922" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="97" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="238" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15780" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="409" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E262192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14901" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGAT</genome_strand>
        <mrna_strand>TGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265135" ref_strand="+" ref_description="SGN-E265135 [cLEI-2-M15]">
      <seq>tgaagtctatcaccatttgaaggctgtgattaacaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttatgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcataggaatggatgttgcagcgttagaattatacggaaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14601" stop="15772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14901" g_stop="14922" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="97" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15472" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="208" r_length="48" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E265135" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14901" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGAC</genome_strand>
        <mrna_strand>TGAAGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAACAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTATGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATAGGAATGGATGTTGCAGCGTTAGAATTATACGGAAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205660" ref_strand="+" ref_description="SGN-E205660 [cLEC-21-A1]">
      <seq>agtctatcaccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14604" stop="16425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14904" g_stop="14922" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="94" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="157" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="235" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="430" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="481" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16125" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="528" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E205660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14904" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTATCACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGAT</genome_strand>
        <mrna_strand>AGTCTATCACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698209" ref_strand="+" ref_description="SGN-E698209 [FA05CD06]">
      <seq>caccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaagttttattagaattttgaatctgaaaagaaaaaaaaaagttttttttagcttggttacttaaaaactttgatatgcacagttctactatgttctaataaaaatttgagggtttgggttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14802" stop="17199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14911" g_stop="14922" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="87" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="228" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="423" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="474" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="563" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="615" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="672" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16555" g_stop="16907" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="1021" r_length="349" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E698209" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1025</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14911" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAA</genome_strand>
        <mrna_strand>CACCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAAGTTTTATTAGAATTTTGAA-TCTGAAAAGAAAAAAAAA-AGTTTTTTTTA-GCTTGGTTACTTAAAAACTTTGATATGCACAGTTCTACTATGTTCTAA-TAAAAATTTGAGGGTTTGGGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233590" ref_strand="+" ref_description="SGN-E233590 [cLED-9-L20]">
      <seq>ccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14802" stop="16399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14913" g_stop="14922" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="85" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="148" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="226" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="421" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="472" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16079" g_stop="16099" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="493" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E233590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14913" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTG</genome_strand>
        <mrna_strand>CCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241209" ref_strand="+" ref_description="SGN-E241209 [cLED-26-K9]">
      <seq>ccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14802" stop="16101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14913" g_stop="14922" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="85" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="148" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="226" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15801" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="418" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E241209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14913" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCT</genome_strand>
        <mrna_strand>CCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239793" ref_strand="+" ref_description="SGN-E239793 [cLED-29-O7]">
      <seq>ccatttgaaggctgtgattaagaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14802" stop="16087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14913" g_stop="14922" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15110" g_stop="15184" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="85" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="148" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="226" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15610" g_stop="15787" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="404" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E239793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14913" e_stop="14922"/>
          <exon e_start="15110" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGAAGGTTTGAGAGCTTTTATTACCTCTAAATATTGTTTTAGGTGGACCAATCTTATATATGCTTTTGAATTTAGGGGATCGATTGGTGTCTTTGGCTCCATTCAAGCTCACAATCTCATTTGACTTTGTTCATGTTATACTTTCTCCTCTTTATCTTGTTTTGTCTGATAATAGTTATGCTTTAATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTC</genome_strand>
        <mrna_strand>CCATTTGAAG...........................................................................................................................................................................................GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204169" ref_strand="+" ref_description="SGN-E204169 [cLEC-13-M9]">
      <seq>tttgaaggctgtgattaaaaagaaatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14804" stop="16427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15103" g_stop="15184" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="145" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="223" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="418" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="469" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16127" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="518" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E204169" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15103" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGT</genome_strand>
        <mrna_strand>TTTGAAGGCTGTGATTAAAAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447280" ref_strand="+" ref_description="SGN-E447280 [cSTA-25-J4]">
      <seq>gaagaaatatggtcaggatgccacaaatgttggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtcagagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14821" stop="16608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15121" g_stop="15184" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="127" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="205" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="400" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="451" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="540" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="577" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E447280" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15121" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCT</genome_strand>
        <mrna_strand>GAAGAAATATGGTCAGGATGCCACAAATGTTGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCAGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714517" ref_strand="+" ref_description="SGN-E714517 [FB11CF12]">
      <seq>cagttatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14823" stop="17012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15122" g_stop="15184" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="204" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="399" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="450" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="539" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="591" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="648" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16555" g_stop="16712" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="806" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E714517" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15122" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTT</genome_strand>
        <mrna_strand>CAGTTATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714209" ref_strand="+" ref_description="SGN-E714209 [FB10DC07]">
      <seq>cgatatatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatataatatgaccttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14824" stop="17036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15123" g_stop="15184" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="125" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="203" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="398" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="449" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="538" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="590" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="647" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16555" g_stop="16736" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="829" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E714209" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15123" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGT</genome_strand>
        <mrna_strand>CGATATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATAATATGACCTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251325" ref_strand="+" ref_description="SGN-E251325 [cLEG-10-P6]">
      <seq>tatggtcaggatgccacaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14828" stop="16635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15128" g_stop="15184" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="120" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="198" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="393" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="444" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="533" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="585" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16425" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="606" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E251325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15128" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCT</genome_strand>
        <mrna_strand>TATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480442" ref_strand="+" ref_description="SGN-E480442 [cSTD-13-N10]">
      <seq>gtcaggatgccacaaatgtcggtgacgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacaccggaaaggtggtcattggaatggacgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaactcatttgtgtcagagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtgcagattgtcggagatgacctccttgtcaccaaccctaagagggttgccaaggcaattgcagagaagacttgcaatgctcttcttgtcaaggttagccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14832" stop="16731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15132" g_stop="15184" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="116" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="194" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="389" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="440" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="529" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="581" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16431" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="608" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E480442" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15132" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGC</genome_strand>
        <mrna_strand>GTCAGGATGCCACAAATGTCGGTGACGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAACTCATTTGTGTCAGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTGCAGATTGTCGGAGATGACCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTTGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTGTCAAG......................................................................................GTTAGCCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394797" ref_strand="-" ref_description="SGN-E394797 [TUS-42-A4](-)">
      <seq>gcgattgggtacgggcccccctcgagactagttccaggatgcccaaatgtcggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattgaaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14824" stop="16095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15137" g_stop="15184" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="84" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="147" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="225" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15795" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="411" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E394797" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394797" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15137" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACC</genome_strand>
        <mrna_strand>GATGCC-CAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGAAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456675" ref_strand="+" ref_description="SGN-E456675 [cSTS-30-O17]">
      <seq>acaaatgttggtgacaagggtggttttgctcctaatatccaggaagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaggcagggttggggtgtaatgaccagtcaccgcagtggagaaacagaaataccttcattgctgatcttgctgttgggtttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14843" stop="16621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15143" g_stop="15184" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="106" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="184" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="379" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="430" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="519" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16321" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="569" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E456675" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15143" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGG-AGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCA-GGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTG-TCGGTTTGTCAA</genome_strand>
        <mrna_strand>ACAAATGTTGGTGACAAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAG-AGGCAGGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAA-ATACCTTCATTGCTGATCTTGCTGTTGGGTTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480878" ref_strand="+" ref_description="SGN-E480878 [cSTD-15-L9]">
      <seq>gtcggtgactgagggtggttttgctcctaatatccaaggagaacaaggaagggtcttgaattgctcaagaccagccattgagaaagcaggttacaccggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgttggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcangttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14849" stop="16608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15149" g_stop="15184" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="103" r_length="65" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="181" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="376" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="427" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="516" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="553" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E480878" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15149" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGTGA-TGAGGGTGGTTTTGCTCCTAATATCC-AGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAA-GGTCTTGAATTGCTCAAGA-CAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCT</genome_strand>
        <mrna_strand>GTCGGTGACTGAGGGTGGTTTTGCTCCTAATATCCAAG.....................................................................................GAGAACAAGGAAGGGTCTTGAATTGCTCAAGACCAGCCATTGAGAAAGCAGGTTACACCGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCANGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207305" ref_strand="+" ref_description="SGN-E207305 [cLEC-30-F21]">
      <seq>cggtgatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14851" stop="16284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15151" g_stop="15184" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="97" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="175" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="370" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15984" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="413" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E207305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15151" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTC</genome_strand>
        <mrna_strand>CGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208053" ref_strand="+" ref_description="SGN-E208053 [cLEC-34-M14]">
      <seq>gatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgacagtattgaagctgtgaagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14855" stop="16427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15155" g_stop="15184" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="93" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="171" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="366" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="417" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16127" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="466" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E208053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15155" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGT</genome_strand>
        <mrna_strand>GATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGACAGTATTGAAGCTGTGAAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258492" ref_strand="+" ref_description="SGN-E258492 [cLEG-47-A9]">
      <seq>gatgagggtggttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14855" stop="16010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15155" g_stop="15184" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="93" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="171" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15710" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="272" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E258492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15155" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGGTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGA</genome_strand>
        <mrna_strand>GATGAGGGTGGTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731240" ref_strand="+" ref_description="SGN-E731240 [LA26CC03]">
      <seq>ctgtttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaataaattcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14951" stop="16998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15162" g_stop="15184" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="86" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="164" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="359" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="410" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="499" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="551" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="608" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16555" g_stop="16698" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="751" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E731240" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15162" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTT</genome_strand>
        <mrna_strand>CTGTTTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCC-AAAATAAATTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291165" ref_strand="+" ref_description="SGN-E291165 [cLET-8-H24]">
      <seq>ttttgctcctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14951" stop="15968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15166" g_stop="15184" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="82" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="160" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15668" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="219" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E291165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15166" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTCCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATT</genome_strand>
        <mrna_strand>TTTTGCTCCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552879" ref_strand="+" ref_description="SGN-E552879 [cTSB-5-F16]">
      <seq>cctaatatccaggagaacaaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaagttttattagtatttttgattctgaaaaaaaaaaaaaaagagttttttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14959" stop="17127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15173" g_stop="15184" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15270" g_stop="15332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="75" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="153" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="348" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="399" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="488" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="540" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="597" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16555" g_stop="16828" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="872" r_length="275" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E552879" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15173" e_stop="15184"/>
          <exon e_start="15270" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATATCCAGGTGAAGTACATTCTTATGCTGTTGTATTACATCCTGTTGAATGTTACCCCAGTGCACTGACATGAATATGGTTTCGAAAATTCAGGAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTG-AAAAGAAAAAAAAAGAGTTTTTTTTAG</genome_strand>
        <mrna_strand>CCTAATATCCAG.....................................................................................GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAAGTTTTATTAGTATTTTTGATTCTGAAAAAAAAAAAAAAAGAGTTTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552262" ref_strand="+" ref_description="SGN-E552262 [cTSB-3-F4]">
      <seq>caaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagacttcaaaacaagttttgttttctgaagttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttgtactatgttctaatttanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14975" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15275" g_stop="15332" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="331" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="382" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="471" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="523" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="580" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16888" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="914" r_length="334" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E552262" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15275" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGA</genome_strand>
        <mrna_strand>CAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTTCAAAACAAGTTTTGTTTTCTGAAGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTTANAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551873" ref_strand="+" ref_description="SGN-E551873 [cTSB-2-B9]">
      <seq>caaggaaggtcttgaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaagttttattagtattttgaattctgaaaagaaaaaaaaaaaagttttttttaggcttggttactgtaaaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14975" stop="17150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15275" g_stop="15332" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="331" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="382" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="471" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="523" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="580" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16850" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="877" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E551873" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15275" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAG-AAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTG</genome_strand>
        <mrna_strand>CAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAAGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAAAAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552213" ref_strand="+" ref_description="SGN-E552213 [cTSB-3-D16]">
      <seq>caaggaacgtcttgaattgctcaagacagcctttgagaaagcaggttacactggaaaggtgggcattggaatggatgatgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaaatacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14975" stop="17113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15275" g_stop="15332" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="331" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="382" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="471" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="523" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="580" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16813" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="839" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E552213" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15275" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAA</genome_strand>
        <mrna_strand>CAAGGAACGTCTTGAATTGCTCAAGACAGCCTTTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGGCATTGGAATGGATGATGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAAATACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623546" ref_strand="+" ref_description="SGN-E623546 [88639]">
      <seq>ttatgnaattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagaccggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagtttcttgttctgcacaaaataaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14987" stop="16992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15283" g_stop="15332" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="323" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="374" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="463" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="515" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="572" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16692" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="710" r_length="138" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E623546" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15283" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAG-TTGTTGATCTGCCAAAAATAAATT</genome_strand>
        <mrna_strand>TTATGNAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTTCTTGTTCTGCACAAAATAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700369" ref_strand="+" ref_description="SGN-E700369 [FA12DG01]">
      <seq>ctctttttgctcaagacagccattgagaaagcaggttacactggcaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14991" stop="16981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15285" g_stop="15332" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="321" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="372" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="461" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="513" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="570" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16681" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="697" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E700369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15285" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCC</genome_strand>
        <mrna_strand>CTCTTTTTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGCAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204926" ref_strand="+" ref_description="SGN-E204926 [cLEC-16-A19]">
      <seq>ttgaattgctcaagacagccattgagaaagcacgttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14986" stop="16100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15286" g_stop="15332" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15800" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="316" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E204926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15286" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCC</genome_strand>
        <mrna_strand>TTGAATTGCTCAAGACAGCCATTGAGAAAGCACGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301880" ref_strand="+" ref_description="SGN-E301880 [cLEW-25-F11]">
      <seq>aattgctcaagacagccattgagaaagcaggttacactggaaaggtggtcattggaatggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccactcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacatatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="14989" stop="16758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15289" g_stop="15332" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="122" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="317" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="368" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="457" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="509" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16458" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="563" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E301880" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15289" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAAC</genome_strand>
        <mrna_strand>AATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG............................................................................................GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCACTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACATATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452748" ref_strand="+" ref_description="SGN-E452748 [cSTS-17-H16]">
      <seq>tacaccggaaaggtggtcattggaatggacgttgctgcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgtcggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttnncgcagcctgttgagccctactaaatttcagcagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15123" stop="16947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15321" g_stop="15332" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15425" g_stop="15502" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="90" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="285" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="336" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="425" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="477" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="534" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16555" g_stop="16649" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="629" r_length="95" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E452748" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15321" e_stop="15332"/>
          <exon e_start="15425" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTGGAAAGGTGAGTATCTCAATTACATTTTGAGTCGCACAATTCTTTGTTTTCATAGCTGTTGTTAGATGATCTGGTGGCTGAGATGATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCC</genome_strand>
        <mrna_strand>TACACCGGAAAG............................................................................................GTGGTCATTGGAATGGACGTTGCTGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTCGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTNNCGCAGCCTGTTGAGCCCTACTAAATTTCAGCAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466245" ref_strand="+" ref_description="SGN-E466245 [cPRO-23-L9]">
      <seq>attttctgtttaggtggtcattggaatggacgttgctgcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgtcggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15112" stop="17048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15412" g_stop="15502" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="286" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="337" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="426" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="478" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="535" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16748" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="725" r_length="190" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E466245" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15412" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGC</genome_strand>
        <mrna_strand>ATTTTCTGTTTAGGTGGTCATTGGAATGGACGTTGCTGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTCGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC--AAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690698" ref_strand="+" ref_description="SGN-E690698 [LH_Ea04C24]">
      <seq>ccgtggatgttgcagcatctgaattttacggaaaggacaactcttatgacctgaacttcaaagaagagagcaacgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggttgccaaggcaatcgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttgaagtgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggatatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaaaaaaaagagttttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15138" stop="17179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15435" g_stop="15502" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="263" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="314" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="455" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="512" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="822" r_length="310" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E690698" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15435" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>CCGTGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAACTCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAACGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTTGCCAAGGCAATCGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTT---CAG---C-A--GTTGA-AGTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTG---A-AAAAAAAAAGAGTTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694561" ref_strand="+" ref_description="SGN-E694561 [LH_Ea04D23](-)">
      <seq>ggatgttgcagcatctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaacgccggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggttgccaaggcaatcgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttgaagtgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggatatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaaaaaaaagagttttttttaaggttggtgcctgtaaanctttgatatgcaagttccttcatgggctaattaatattttgatggttttgtttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15139" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15439" g_stop="15502" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="259" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="310" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="399" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="451" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="508" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="834" r_length="326" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="841" polyA_stop="855"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E694561" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15439" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>GGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAACGCCGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTTGCCAAGGCAATCGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTT---CAG---C-A--GTTGA-AGTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTG---A-AAAAAAAAAGAGTTTTTTTTAAGGTTGGTGCCTGTAAANCTTTGATATGCAAGTTCCTTC-ATGGGCTAATTAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553490" ref_strand="+" ref_description="SGN-E553490 [cTSC-1-E20]">
      <seq>ctgaattttacggaaaggacaaatcttatgacctgaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15153" stop="17094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15453" g_stop="15502" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="245" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="296" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="385" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="437" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="494" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16794" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="734" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E553490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15453" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTG</genome_strand>
        <mrna_strand>CTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723129" ref_strand="+" ref_description="SGN-E723129 [FC19CA05]">
      <seq>tcttatgacctgaacttcaaagaagagagcaaccacggatcacaaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcaaagcgtctcgccaagtacaaccagctgttgaggatcgaaaaggaactcggatcaaaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactccaaaacaagttttgttttctgaggttttattaagtattttgaattctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15176" stop="17112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15476" g_stop="15502" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="222" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="273" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="362" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="414" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="471" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16811" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="729" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E723129" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15476" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATGACCTGAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATT-AGTATTTTGAATTCTGAAAAGAAAAA</genome_strand>
        <mrna_strand>TCTTATGACCTGAACTTCAAAGAAGAG...........................................................................................................AGCAACCACGGATCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAAAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAAAGGAACTCGGATCAAAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCCAAAACAAGTTTTGTTTTCTGAGGTTTTATTAAGTATTTTGAATTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590118" ref_strand="+" ref_description="SGN-E590118 [43707]">
      <seq>gaacttcaaagaagagagcaatgacggctcacaaaagatatcaggtgaccaactcaaggatttgtacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagaccggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatatcttgatggttttgctttttcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15187" stop="17202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15487" g_stop="15502" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15610" g_stop="15804" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="211" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="262" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="351" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="403" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="460" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="807" r_length="347" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E590118" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15487" e_stop="15502"/>
          <exon e_start="15610" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCAAAGAAGAGGCAAGTACTAACTATTGCTTCTTTCACACATGCTTTTTTCGAGGTAGTCTTGTAGTCAAACTGTTCATACGTTGTTCAGTTTTGCTCATATCAATTCTTCTTTGCAGAGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GAACTTCAAAGAAGAG...........................................................................................................AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGATTTGTACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATATCTTGATGGTTTTGCTTTTTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712313" ref_strand="+" ref_description="SGN-E712313 [FB04CA06]">
      <seq>aaaagatatcaggtgaccaactcaaggacttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagtttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15326" stop="17176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15626" g_stop="15804" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="230" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="319" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="371" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="428" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16877" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="752" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E712313" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15626" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAG-TTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAAT</genome_strand>
        <mrna_strand>AAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201862" ref_strand="+" ref_description="SGN-E201862 [cLEC-18-I19]">
      <seq>actcaaggacttatacaagtcatttgtgtccgagtaccggattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctctttttctcaaggttaaccaaatcggtcgtgtgaccgagagtattgaagctgtgaacatgtccaagaaggcacgttggggtgtaatgaccagtcaccgcagtggagaaacagaatataccttcattgctggtcttgctgtcgggttgtcaacgggacaaatcacgactggagctccttgcacgtcagagcgtctcgccaagtacaaccagctgctgaggatcgaagaggaactcggatcagaggctgtttatgcaagagcaagcttccgcaagcccgatgagccctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15345" stop="16934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15645" g_stop="15804" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="211" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="409" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16634" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="489" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201862" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15645" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTA</genome_strand>
        <mrna_strand>ACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCGGATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTTTTCTCAAG......................................................................................GTTAACCAAATCGGTCGTGTGACCGAGAGTATTGAAGCTGTGAACATGTCCAAGAAGGCACGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAATATACCTTCATTGCTGGTCTTGCTGTCGGGTTGTCAACG.................................................................................GGACAAATCACGACTGGAGCTCCTTGCACGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGCTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAAGAGCAAGCTTCCGCAAGCCCGATGAGCCCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552759" ref_strand="+" ref_description="SGN-E552759 [cTSB-4-P10]">
      <seq>gacttatacagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttgtactatgttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15352" stop="17175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15652" g_stop="15804" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="203" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="292" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="344" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="401" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16875" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="723" r_length="322" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E552759" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15652" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAG-AAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTA</genome_strand>
        <mrna_strand>GACTTATAC-AGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258023" ref_strand="+" ref_description="SGN-E258023 [cLEG-48-N8]">
      <seq>gcttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcatagcgtctcgccaagtacaaccagctgttgaggatctaagaggaactcggatcagagggtgtttatgccagagcaaacttccgcaagcccgttgagccctactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15354" stop="16936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15653" g_stop="15804" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="203" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="292" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="344" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="401" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16636" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="483" r_length="82" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E258023" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15653" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAA</genome_strand>
        <mrna_strand>GCTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCATAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCTAAGAGGAACTCGGATCAGAGGGTGTTTATGCCAGAGCAAACTTCCGCAAGCCCGTTGAGCCCTACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263646" ref_strand="+" ref_description="SGN-E263646 [cLEG-60-A19]">
      <seq>ttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagaactcaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15355" stop="17185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15655" g_stop="15804" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="201" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="290" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="342" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="399" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16885" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="730" r_length="331" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="740"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E263646" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15655" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAG-ACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTT</genome_strand>
        <mrna_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGAACTC-AAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256566" ref_strand="+" ref_description="SGN-E256566 [cLEG-38-K14]">
      <seq>ttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15355" stop="16978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15655" g_stop="15804" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="201" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="290" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="342" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="399" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16678" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="523" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E256566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15655" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCT</genome_strand>
        <mrna_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256380" ref_strand="+" ref_description="SGN-E256380 [cLEG-38-C19]">
      <seq>ttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15355" stop="16946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15655" g_stop="15804" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="201" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="290" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="342" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="399" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16646" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="491" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E256380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15655" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGT</genome_strand>
        <mrna_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256517" ref_strand="+" ref_description="SGN-E256517 [cLEG-38-E5]">
      <seq>ttatacaagtcatttgtgtccgagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15355" stop="16603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15655" g_stop="15804" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="201" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="290" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16303" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="322" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E256517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15655" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATC</genome_strand>
        <mrna_strand>TTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264363" ref_strand="+" ref_description="SGN-E264363 [cLEG-67-I13]">
      <seq>acaagtcatttgtgtccgagtaccctattgtttcaattgaagatccattttaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttcccagtgttgagattggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15359" stop="16967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15659" g_stop="15804" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="197" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="286" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="338" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="395" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16667" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="508" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E264363" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15659" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGA</genome_strand>
        <mrna_strand>ACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTTACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCCAGTGTTGAGATTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604113" ref_strand="-" ref_description="SGN-E604113 [67304]">
      <seq>tgtccggagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgttggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttaattagtattttgaattctgaaaaaaaaaagagtttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatacttttgatggttttgctttttctcaaaaaaaaaaaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15371" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15671" g_stop="15804" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="186" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="275" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="327" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="384" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="721" r_length="337" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="748"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E604113" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604113" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15671" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCC-GAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTT-ATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATA-TTTTGATGGTTTTG</genome_strand>
        <mrna_strand>TGTCCGGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTAAAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTAATTAGTATTTTGAATTCTG---A-AAAAAAAAAGAG-TTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATACTTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261014" ref_strand="+" ref_description="SGN-E261014 [cLEG-55-G12]">
      <seq>gagtaccctattgtttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaatattttgatggttttggttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15376" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15676" g_stop="15804" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="180" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="321" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="378" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16914" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="739" r_length="361" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E261014" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15676" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</genome_strand>
        <mrna_strand>GAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAATATTTTGATGGTTTTGGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597336" ref_strand="-" ref_description="SGN-E597336 [40837]">
      <seq>accctattgttttcaattgaagatccatttgaccaagatgactgggagacctatgctaagctcaccactgagattggggagcaagtacagattgttggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttaattagtattttgaattctgaaaaaaaaaagagtttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatacttttgatggttttgctttttctcaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15380" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15680" g_stop="15804" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="177" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="266" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="318" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="375" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="712" r_length="337" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="741"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E597336" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597336" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15680" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTATTG-TTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTT-ATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATA-TTTTGATGGTTTTG</genome_strand>
        <mrna_strand>ACCCTATTGTTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTAAAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTAATTAGTATTTTGAATTCTG---A-AAAAAAAAAGAG-TTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATACTTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567213" ref_strand="-" ref_description="SGN-E567213 [11304]">
      <seq>ctatgtttcaatgaagatccatttgaccaagatgactgggaaacctatgctaaagctcactactgagattgggagcaagttcagattgtcggagatgacctcttgtcaccaacctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15383" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15683" g_stop="15804" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="169" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="310" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="367" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="686" r_length="319" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="698"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E567213" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15683" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCT-AAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>CTAT-GTTTCAA-TGAAGATCCATTTGACCAAGATGACTGGGAAACCTATGCTAAAGCTCACTACTGAGATT-GGGAGCAAGTTCAGATTGTCGGAGATGACC-TCTTGTCACCAA-CCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213917" ref_strand="-" ref_description="SGN-E213917 [cLEC-80-A7]">
      <seq>ttcaatgaagatccattgannccagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagatngtcggtgatgaccttctngtcaccaacccttaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15411" stop="17173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15690" g_stop="15804" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="166" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="255" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="307" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="364" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16873" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="683" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213917" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213917" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15690" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCC-TAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTC</genome_strand>
        <mrna_strand>TTCAA-TGAAGATCCATTGANNCCAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATNGTCGGTGATGACCTTCTNGTCACCAACCCTTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257220" ref_strand="-" ref_description="SGN-E257220 [cLEG-46-L24]">
      <seq>gaagatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattgggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15397" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15697" g_stop="15804" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="158" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="247" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="299" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="356" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="681" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="700"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E257220" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257220" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15697" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>GAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATT-GGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379299" ref_strand="+" ref_description="SGN-E379299 [TUS-3-I17](-)">
      <seq>gatccatttgaccaagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaagtaaaaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattcggaaaagaaaaaaaaagagtttcttttaggctgggttacttaaaacttgatatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15400" stop="17159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15700" g_stop="15804" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="156" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="245" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="297" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="354" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16859" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="657" r_length="303" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E379299" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15700" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAG</genome_strand>
        <mrna_strand>GATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAGTAAAAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCGGAAAAGAAAAAAAAAGAGTTTCTTTTAGGCTGGGTTACT-TAAAAC-TTGATATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250461" ref_strand="+" ref_description="SGN-E250461 [cLEG-18-M15]">
      <seq>caagatgactgggagacctatgctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15412" stop="17190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15712" g_stop="15804" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="144" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="233" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="285" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="342" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16890" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="678" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E250461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15712" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATG</genome_strand>
        <mrna_strand>CAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570612" ref_strand="+" ref_description="SGN-E570612 [15224]">
      <seq>gctaagctcaccactgagattggggagcaagtacagattgttggagatgaccttcttgtcaccaaccctaagagggtcgccaaagcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggctggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagaccggagctccttgcaggtcagagcgtcttgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaaacttccgcaagcccgttgagccctactaaacttcagcagttaaaagtgttgagtatttgttctgccaaaataaattcctcttagattggtcattttaggatataggtatatgaccttcgtgaaataacaaggcagactcaaaacaattttgtcttgtgaggtttattagtattttgaattctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15433" stop="17105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15733" g_stop="15804" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="123" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="212" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="264" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="321" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16805" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="560" r_length="239" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E570612" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15733" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATA-TTATATGACCTTGGTGAAATAACAA-GCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAA</genome_strand>
        <mrna_strand>GCTAAGCTCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAAGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCTGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTTGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAACTTCCGCAAGCCCGTTGAGCCCTACTAAACTTCAGCAGTTAAAAGTGTT--GA--G-T-A--T-TTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGGTATATGACCTTCGTGAAATAACAAGGCAGACTC-AAAACAA-TTTTGTCTTGTGAGG-TTTATTAGTATTTTGAATTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310844" ref_strand="+" ref_description="SGN-E310844 [cLEZ-15-K12]">
      <seq>ctaagctcactgctgagattggggagcaagtacagattgtcggtgatgaccttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaataaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcatagcgtctcgccaagtacaaccagctgttgaggatcgaataggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattaatattttgaattctgaaaagaaaaaaaaagaattttttttaagcttggttactgtaaaactttgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15434" stop="17155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15734" g_stop="15804" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="122" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="211" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="263" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="320" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16855" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="621" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E310844" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15734" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATG</genome_strand>
        <mrna_strand>CTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAATAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCATAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAATAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAATATTTTGAATTCTGAAAAGAAAAAAAAAGAATTTTTTTTAAGCTTGGTTACTGTAAAACTTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574990" ref_strand="-" ref_description="SGN-E574990 [34545]">
      <seq>aagatcaccactgagattggggagcaagtacagattgttggagaatgaccttcttgtcaccaaccctaagagggtcgccaaagcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggctggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagaccggagctccttgcaggtcagagcgtcttgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaaacttccgcaagcccgttgagccctactaaacttcagcagttaaaagtgttgagtatttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaaagagttttttttaggctgatgactgtaaaactttgatggcaagtttgtactatgttctaattaatatttgatgtttgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15436" stop="17201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15736" g_stop="15804" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="121" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="210" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="262" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="319" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16902" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="642" r_length="323" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E574990" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.037" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574990" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15736" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTG-ATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTT</genome_strand>
        <mrna_strand>AAGATCACCACTGAGATTGGGGAGCAAGTACAGATTGTTGGAGAATGACCTTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAAGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCTGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTTGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAACTTCCGCAAGCCCGTTGAGCCCTACTAAACTTCAGCAGTTAAAAGTGTT--GA--G-T-A--T-TTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCT-----G---AAAAAAGAGTTTTTTTTAGGC-TGATGACTGTAAAACTTTGAT-GGCAAGTTTGTACTATGTTCTAATTAATA-TTTGAT-G-TTTGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559156" ref_strand="+" ref_description="SGN-E559156 [18608]">
      <seq>aaactagtggatccccggcgctgcatgtccagattgtcggagatgacctccttgtcaccaaccctaagagggtcgccaagggccaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgtcctaattaaatattttgatggtttgctttttctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15454" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15760" g_stop="15804" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="68" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="121" r_length="53" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="210" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="262" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="319" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16910" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="670" r_length="351" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E559156" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15760" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAA-GG-CAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTGGTTTTTTCAAATCT</genome_strand>
        <mrna_strand>CATGTCCAGATTGTCGGAGATGACCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGGCCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTCCTAATTAAATATTTTGATGGTTTGCTTTTTCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557892" ref_strand="+" ref_description="SGN-E557892 [16763]">
      <seq>tctagattgtcggagatgacctccttggtcaccaaccctaagagggtcgccaagggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatattttgatggttttgctttttctcnaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15640" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15764" g_stop="15804" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="94" r_length="52" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="183" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="235" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="292" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16911" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="645" r_length="353" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E557892" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15764" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATTGTCGGTGATGACCTTCTT-GTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAA-GGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTGGTTTTT-TCAAATCTC</genome_strand>
        <mrna_strand>TCTAGATTGTCGGAGATGACCTCCTTGGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATATTTTGATGGTTTTGCTTTTTCTCNAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410134" ref_strand="+" ref_description="SGN-E410134 [PPI-16-K11]">
      <seq>gattgtcggagatgatctccttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatctttgctgttggtttgtcaacgggacaaatcaagacttggagctccttgcaggtcagaagcgtctcgcaaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggcttgtttatgcaggagcaagctttccgcaagcctgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcatttttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgcggttttattagtattttgaattctgaaaaagaagagagttctttttttangcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatatttttgatggttttgctttttctcaaatctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15468" stop="17213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15768" g_stop="15804" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="88" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="177" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="230" r_length="53" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="289" r_length="59" r_score="0.912"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16912" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="647" r_length="358" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E410134" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15768" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATC-TTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGAC-TGGAGCTCCTTGCAGGTCAG-AGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGC-TGTTTATGCAGGAGCAAGCT-TCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCA-TTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATA-TTTTGATGGTTTTGGTTTTT-TCAAATCTCA</genome_strand>
        <mrna_strand>GATTGTCGGAGATGATCTCCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACTTGGAGCTCCTTGCAGGTCAGAAGCGTCTCGCAAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTTGTTTATGCAGGAGCAAGCTTTCCGCAAGCCTGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGCGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTANGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATATTTTTGATGGTTTTGCTTTTTCTCAAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357008" ref_strand="+" ref_description="SGN-E357008 [cTOS-22-I19]">
      <seq>ttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15485" stop="17201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15785" g_stop="15804" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="71" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="160" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="212" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="269" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16901" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="616" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E357008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15785" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTCACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTT</genome_strand>
        <mrna_strand>TTCTTGTCACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213943" ref_strand="+" ref_description="SGN-E213943 [cLEC-80-M3]">
      <seq>accaaccctatcaggggcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgacagtattgaagctgtgaatatgtccaaaaaggcaggatggggtgtaatgaccagtcaccgcagtggaaaaacacaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcatagcgtctcgcctagtacaaccagctgttgaggatctaagaggaactcggatcataggctgtttatgcatgagcaagcttccgcaagcccgttgagccctactagatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttatattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttggtttctgaggatttattatgattttgaattctgacaagaaaaaaaaagagttatttttaggcttggctactgtaaaactgtgatatgcgaggctctactatgtactaattaatattctgatggacttcggtgtatagatggcggccacacaacatgcccaaaaactcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15635" stop="17202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15793" g_stop="15804" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16890" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="597" r_length="336" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213943" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15793" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATG</genome_strand>
        <mrna_strand>ACCAACCCTATC.........................................................................................................................................AGGGGCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGACAGTATTGAAGCTGTGAATATGTCCAAAAAGGCAGGATGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAAAAACACAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCATAGCGTCTCGCCTAGTACAACCAG.............................................................................................CTGTTGAGGATCTAAGAGGAACTCGGATCATAGGCTGTTTATGCATGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAGATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTATATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGGTTTCTGAGGATTTATTATGATTTTGAATTCTGACAAGAAAAAAAAAGAGTTATTTTTAGGCTTGGCTACTGTAAAACTGTGATATGCGAGGCTCTACTATGTACTAATTAATATTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214104" ref_strand="+" ref_description="SGN-E214104 [cLEC-80-M2]">
      <seq>accaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatatttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15640" stop="17190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15793" g_stop="15804" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16890" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="598" r_length="337" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E214104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15793" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATA-TTTTGATG</genome_strand>
        <mrna_strand>ACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201182" ref_strand="+" ref_description="SGN-E201182 [cLEC-10-E1]">
      <seq>accaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15640" stop="16959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15793" g_stop="15804" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16659" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E201182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15793" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</genome_strand>
        <mrna_strand>ACCAACCCTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419632" ref_strand="-" ref_description="SGN-E419632 [STM-29-P8]">
      <seq>cacccttaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggcagtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagaccggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatattttgatggttttgctttttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15635" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15795" g_stop="15804" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15942" g_stop="15992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="61" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="150" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="202" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="259" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="596" r_length="337" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="616"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E419632" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419632" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15795" e_stop="15804"/>
          <exon e_start="15942" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCTAAGGTAAGGTTGAAGCTTGAACTATATTAAGTGGTTGCATATCACAGTTTTTGTTGCCATTGAAAAGAAAAGACAGACCGTCAATCAATTTCTCTAGGTGTTATTGTTTACCATGTTTACTTATTTATAATGGCTTGCAGAGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>CACCCTTAAG.........................................................................................................................................AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGCAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369610" ref_strand="+" ref_description="SGN-E369610 [TUS-25-P24](-)">
      <seq>gtcgccaaggcaattgcaaaaaaaacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaaaatgtccaagaaggcaggttggggtgtaatgaccagtccccccagtggagaaacaaaaaataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcaaagcgtctcgccaagtacaaccagctgttgaggatcgaaaaggaactcggatcaaaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttttgaggttttattagtattttgaattttaaaaaaaaaaaaaaaaagttttttttaggcttggttactgtaaaactttgatatgcaagtttttactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15645" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15945" g_stop="15992" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="137" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="189" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="246" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="598" r_length="352" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="611"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E369610" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15945" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GTCGCCAAGGCAATTGCAAAAAAAACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAAATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCCCCCCAG........................................................................................................TGGAGAAACAAAAAATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAAAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAAAGGAACTCGGATCAAAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTTTGAGGTTTTATTAGTATTTTGAATTTTAAAAAAAAAAAAAAAAAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTTTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255512" ref_strand="-" ref_description="SGN-E255512 [cLEG-30-H17]">
      <seq>gtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15645" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15945" g_stop="15992" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="137" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="189" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="246" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="571" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="592"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E255512" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255512" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15945" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>GTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259244" ref_strand="-" ref_description="SGN-E259244 [cLEG-43-N7]">
      <seq>aattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggtcactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15656" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15956" g_stop="15992" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="126" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="178" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="235" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="560" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="579"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E259244" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15956" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>AATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTCACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259652" ref_strand="-" ref_description="SGN-E259652 [cLEG-42-E4]">
      <seq>cagagaagacttgcaatgctcttcttctcaaggttaaccaaatcgggtagtgtgaccgagagtattgaagctggtgaagatgtccaagaaggcaggttgggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgttcttgctgtcggtttgtcaacgggacaaatcaagactggaggctccttggcaggtcagaggcggtctcgccaaggtacaaccagctggttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaaggcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaaggttttgttttctgaggttttattaggtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttgggttactggtaaaactttgatatgcaaggtttctactatgttctaattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15661" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15961" g_stop="15992" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="124" r_length="92" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="176" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="238" r_length="62" r_score="0.825"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.78"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16882" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="573" r_length="335" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E259652" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15961" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATC-GGTAGTGTGACCGAGAGTATTGAAGCT-GTGAAGATGTCCAAGAAGGCAGGTT-GGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGA-GCTCCTT-GCAGGTCAGA-GC-GTCTCGCCAA-GTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCT-GTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAA-GCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAA-GTTTTGTTTTCTGAGGTTTTATTA-GTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTT-GGTTACT-GTAAAACTTTGATATGCAA-GTTTCTACTATGTTCTAATTAATA</genome_strand>
        <mrna_strand>CAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGGTAGTGTGACCGAGAGTATTGAAGCTGGTGAAGATGTCCAAGAAGGCAGGTTGGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGTTCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGGCTCCTTGGCAGGTCAGAGGCGGTCTCGCCAAGGTACAACCAG.............................................................................................CTGGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGGTTTTGTTTTCTGAGGTTTTATTAGGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGGTTACTGGTAAAACTTTGATATGCAAGGTTTCTACTATGTTCTAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250505" ref_strand="-" ref_description="SGN-E250505 [cLEG-18-K1]">
      <seq>agacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15667" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15967" g_stop="15992" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="115" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="167" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="224" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="576" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="593"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E250505" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15967" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>AGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555897" ref_strand="+" ref_description="SGN-E555897 [cTSD-1-M10]">
      <seq>acttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttgtactatgttctaattaatattttgatggttttggtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15669" stop="17200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15969" g_stop="15992" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="113" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="165" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="222" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="565" r_length="343" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="586"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E555897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15969" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAG-AAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>ACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213865" ref_strand="-" ref_description="SGN-E213865 [cLEC-76-B6]">
      <seq>caaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15775" stop="17173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15989" g_stop="15992" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16079" g_stop="16167" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="93" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="145" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="202" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16555" g_stop="16873" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="521" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E213865" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213865" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15989" e_stop="15992"/>
          <exon e_start="16079" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTC</genome_strand>
        <mrna_strand>CAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259518" ref_strand="-" ref_description="SGN-E259518 [cLEG-42-O10]">
      <seq>aatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttggtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaaggtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcaggttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggtttaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15787" stop="17200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16087" g_stop="16167" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="134" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="192" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="535" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="558"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E259518" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16087" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTT-GTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAA-GTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCA-GTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>AATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416190" ref_strand="-" ref_description="SGN-E416190 [STM-22-L19]">
      <seq>agtgtgaccgagagtattgaagctgtgaagatgtctaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagatcccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgcccttcgtgaaataccaagcagactcgaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctctttttaggcttggtgactgtaaaactttgatatgcaaagtttgtactatgttctaattaaatattttgatggtttggtaattctcaaaaaaaaaaaaaaaaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15794" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16094" g_stop="16167" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="126" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="183" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="521" r_length="338" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="551"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E416190" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16094" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGC-AAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>AGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATCCCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGCCCTTCGTGAAATACCAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTCTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAAGTTTGTACTATGTTCTAATTAAATATTTTGATGGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561195" ref_strand="-" ref_description="SGN-E561195 [17149]">
      <seq>ccgagagtattgaagctgtgaagatgtctaagaaggctggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgttggtttgtcaacgggacaaatcaagaccggagctccttgcaggtcagagcgtcttgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaaacttccgcaagcccgttgagccctactaaacttcagcagttaaaagtgttgagtatttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaaagagttttttttaggcttgatgactgtaaaactttgatgtgcaagtttgtactatgttctaattaaatattttgatggttttgctttttctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15801" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16101" g_stop="16167" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="119" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="176" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16907" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="511" r_length="335" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E561195" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16101" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTGGTTTTT-TCAAA</genome_strand>
        <mrna_strand>CCGAGAGTATTGAAGCTGTGAAGATGTCTAAGAAGGCTGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACG.................................................................................GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTTGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAACTTCCGCAAGCCCGTTGAGCCCTACTAAACTTCAGCAGTTAAAAGTGTT--GA--G-T-A--T-TTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCT-----G---AAAAAAGAGTTTTTTTTAGGCTTGATGACTGTAAAACTTTGATGTGCAAGTTTGTACTATGTTCTAATTAAATATTTTGATGGTTTTGCTTTTTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337329" ref_strand="+" ref_description="SGN-E337329 [cTOE-7-P8]">
      <seq>atgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15824" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16124" g_stop="16167" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="96" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="153" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16914" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="513" r_length="360" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E337329" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16124" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</genome_strand>
        <mrna_strand>ATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226367" ref_strand="+" ref_description="SGN-E226367 [cLEL-26-O22](-)">
      <seq>ggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15839" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16139" g_stop="16167" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="81" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="138" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="490" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="516"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E226367" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16139" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250457" ref_strand="-" ref_description="SGN-E250457 [cLEG-18-K13]">
      <seq>gttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatcttttgatggttttggttttttcaaacaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15840" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16140" g_stop="16167" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="80" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="137" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="489" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E250457" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250457" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16140" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATCTTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714405" ref_strand="+" ref_description="SGN-E714405 [FB11BD10]">
      <seq>cctttccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15968" stop="17176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16150" g_stop="16167" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16272" g_stop="16323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="70" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="127" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16555" g_stop="16876" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="449" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E714405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16150" e_stop="16167"/>
          <exon e_start="16272" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAA</genome_strand>
        <mrna_strand>CCTTTCCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393743" ref_strand="-" ref_description="SGN-E393743 [TUS-42-B3]">
      <seq>gaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagcccttctaaatttcagcagttccaagtgttgagattgttgagttgttgatttgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttttgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttttactatgttctaattaatattttgatggttttggtttaaaaaaaaggaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15976" stop="17200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16276" g_stop="16323" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="105" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="447" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E393743" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16276" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>GAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTTCTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATTTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTTTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTTTACTATGTTCTAATTAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257623" ref_strand="-" ref_description="SGN-E257623 [cLEG-45-H6]">
      <seq>cttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtatttcgaattctgaaaagaaaaaaaaagcgttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15990" stop="17213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16290" g_stop="16323" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="91" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="443" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="463"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E257623" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257623" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16290" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTCGAATTCTGAAAAGAAAAAAAAAGCGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220597" ref_strand="+" ref_description="SGN-E220597 [cLEL-12-F4](-)">
      <seq>cttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15990" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16290" g_stop="16323" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="91" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="443" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="460"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E220597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16290" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268754" ref_strand="-" ref_description="SGN-E268754 [cLEM-16-L19]">
      <seq>tcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15992" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16292" g_stop="16323" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="89" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="414" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="429"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E268754" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268754" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16292" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>TCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267512" ref_strand="-" ref_description="SGN-E267512 [cLEI-8-A11]">
      <seq>tgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaataaaaaaaaaaaacaaaccaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="15996" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16296" g_stop="16323" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="85" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16881" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="412" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="428"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E267512" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267512" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16296" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAT</genome_strand>
        <mrna_strand>TGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218649" ref_strand="+" ref_description="SGN-E218649 [cLEL-18-M22](-)">
      <seq>gatcttgcttcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctcaggttttattagtattttgaattctataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16084" stop="17117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16300" g_stop="16323" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="80" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16818" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="344" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E218649" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16300" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAG</genome_strand>
        <mrna_strand>GATCTTGCT-TCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTCAGGTTTTATTAGTATTTTGAATTCTATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226772" ref_strand="+" ref_description="SGN-E226772 [cLEL-26-O22](-)">
      <seq>tgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16087" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16308" g_stop="16323" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="73" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="425" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="451"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E226772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16308" e_stop="16323"/>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>TGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412105" ref_strand="-" ref_description="SGN-E412105 [STM-15-B20]">
      <seq>ggacaaatcaagaccggagctccttgcaggtcagagcgtctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaatattttgatggttttgctttttctcaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16105" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16405" g_stop="16461" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16555" g_stop="16896" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="394" r_length="337" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="417"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E412105" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16405" e_stop="16461"/>
          <exon e_start="16555" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT-AATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>GGACAAATCAAGACCGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257457" ref_strand="-" ref_description="SGN-E257457 [cLEG-45-H5]">
      <seq>gcctggagctccttccaggtcagagcgtctcgccaagtccacccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttcctgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16116" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16416" g_stop="16461" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.91"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16555" g_stop="16906" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="398" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="417"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E257457" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257457" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16416" e_stop="16461"/>
          <exon e_start="16555" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GCCTGGAGCTCCTTCCAGGTCAGAGCGTCTCGCCAAGTCCACCCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTCCTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268720" ref_strand="-" ref_description="SGN-E268720 [cLEM-16-L7]">
      <seq>aggtcagagcgtctcgccaagtacaaccagctgttgaggatccaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccttactaaatttcagcagttccaagtgatgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataccaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaacttgaaaagcccctttctactatgttctaattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16132" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16432" g_stop="16461" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="354" r_length="324" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="375"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E268720" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16432" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>AGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCCAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCTTACTAAATTTCAGCAGTTCCAAGTGATGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATACCAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAAC-TTGAAAAGCCCCTTTCTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596315" ref_strand="+" ref_description="SGN-E596315 [39606]">
      <seq>ctcgccaagtacaaccagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16144" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16444" g_stop="16461" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="337" r_length="319" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="375"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E596315" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16444" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>CTCGCCAAGTACAACCAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTT-AAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTG-AAA-AAGAAGAGAGTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607429" ref_strand="+" ref_description="SGN-E607429 [23394]">
      <seq>cagctcttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttaattagtattttgaattctgaaaaaaaaaaagagtttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16253" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16459" g_stop="16461" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16555" g_stop="16879" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="322" r_length="319" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="338"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E607429" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16459" e_stop="16461"/>
          <exon e_start="16555" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTT-ATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>CAG.............................................................................................CTCTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTAAAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTAATTAGTATTTTGAATTCTG--AA-AAAAAAAAAGAG-TTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595895" ref_strand="+" ref_description="SGN-E595895 [39177]">
      <seq>aggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttaaaagtgttgagattgttgagttcttgttctgccaaaataaattcctcttagattggtcattttaggatatagtatatgaccttcgtgaaataacaagcagactcgaaacaatttttgttttgtgaggttttaattagtattttgaattctgaaaaaaaaaagagtttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16271" stop="17178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16571" g_stop="16878" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E595895" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16571" e_stop="16878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTT-ATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATT</genome_strand>
        <mrna_strand>AGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTAAAAGTGTTGAGATTGTTGAGTTCTTGTTCTGCC-AAAATAAATTCCTCTTAGATTGGTCATTTTAGGA-TATAGTATATGACCTTCGTGAAATAACAAGCAGACTC-GAAACAATTTTTGTTTTGTGAGGTTTTAATTAGTATTTTGAATTCTG---A-AAAAAAAAAGAG-TTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220461" ref_strand="+" ref_description="SGN-E220461 [cLEL-12-F4](-)">
      <seq>tgtttatgcaggagcaagcttccgcaagcccgttaacccctactaaatttcagcagttccaagtgttgaaattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16290" stop="17207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16590" g_stop="16906" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="334"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E220461" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16590" e_stop="16906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>TGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTAACCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAAATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257151" ref_strand="-" ref_description="SGN-E257151 [cLEG-46-M1]">
      <seq>caagtttccccaaccccgtggacccttattaaatttcaccagttccaagtgtggagattgtggagttgttattctcccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataccaagcagactcaaaaccaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16304" stop="17199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16604" g_stop="16896" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="316"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E257151" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257151" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16604" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>CAAGTTTCCCCAACCCCGTGGACCCTTATTAAATTTCACCAGTTCCAAGTGTGGAGATTGTGGAGTTGTTATTCTCCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATACCAAGCAGACTCAAAACCAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596401" ref_strand="+" ref_description="SGN-E596401 [39882]">
      <seq>atatgaccttcgtgaaataacaagcagactcaaaacaatttttgttttgtgaggttttattagtattttgaattctgaaaaagaagagagttctttttttaggcttggtgactgtaaaactttgatatgcaagtttgtactatgttctaattaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="16424" stop="17182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16724" g_stop="16879" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="154" polyA_stop="172"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E596401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16724" e_stop="16879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA</genome_strand>
        <mrna_strand>ATATGACCTTCGTGAAATAACAAGCAGACTC-AAAACAATTTTTGTTTTGTGAGGTTTTATTAGTATTTTGAATTCTGAAAA-AGAAGAGA-GTTCTTTTTTTAGGCTTGGTGACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351142" ref_strand="-" ref_description="SGN-E351142 [cTOS-6-N24]">
      <seq>aaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="20982" stop="10381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20682" g_stop="20649" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="137" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20165" g_stop="19831" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="472" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19830" i_stop="19389" i_length="442">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19388" g_stop="19370" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="491" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E351142" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351142" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20682" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19831"/>
          <exon e_start="19388" e_stop="19370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATGATCTTATTTCTCGAATTTTATTATCTTCTTGAAATTCATCGATGAATCGCATGAATACTGAAGAAGCTAAATATTCTTTTTTAATTTATTGCCTATTTATCCTGAATTAGTTTATATTGCTATATTTTTAATTATTGTCTTTTAGGTTTTACTTGTATATTTGAAAGTGTATTTAAGAGATTTGATATTACTGCTTCTCTATCTATACGTATTTTTTCAACTTGCGAATATAGCTTTAAGTGCGTTATTATATTATTAATATATATGATTGAATAATCCAACTAAAAAAAGTCAAATCAGAATAAGAAAAATCAAATTAAATTTATTTTAATCTGAATTTGAGTTATATATTTTTCAAACTGAAAACAAATAGTATAACATCAAATCAAATAATATTCAATACAAAAAAAGAAACAATACAA</genome_strand>
        <mrna_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353687" ref_strand="-" ref_description="SGN-E353687 [cTOS-10-F12]">
      <seq>aaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="20982" stop="10383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20682" g_stop="20649" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="137" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20165" g_stop="19831" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="472" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19830" i_stop="19389" i_length="442">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19388" g_stop="19370" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="491" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E353687" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20682" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19831"/>
          <exon e_start="19388" e_stop="19370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATGATCTTATTTCTCGAATTTTATTATCTTCTTGAAATTCATCGATGAATCGCATGAATACTGAAGAAGCTAAATATTCTTTTTTAATTTATTGCCTATTTATCCTGAATTAGTTTATATTGCTATATTTTTAATTATTGTCTTTTAGGTTTTACTTGTATATTTGAAAGTGTATTTAAGAGATTTGATATTACTGCTTCTCTATCTATACGTATTTTTTCAACTTGCGAATATAGCTTTAAGTGCGTTATTATATTATTAATATATATGATTGAATAATCCAACTAAAAAAAGTCAAATCAGAATAAGAAAAATCAAATTAAATTTATTTTAATCTGAATTTGAGTTATATATTTTTCAAACTGAAAACAAATAGTATAACATCAAATCAAATAATATTCAATACAAAAAAAGAAACAATACAA</genome_strand>
        <mrna_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579818" ref_strand="-" ref_description="SGN-E579818 [86951]">
      <seq>aggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactccttgcaaacagtggtaaacctgagcgtaaagaggcctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagacgactctgatgacagcgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcggctacaaaaacacccgtcaccgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtggccatgtagcaacaccgcacccttcaaaacaggctagtaagactccaaaatcagctggatctcatcactgcaacccgtggcaacaggatttttggttctgaaggtggttcttgattctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttggtctttgtttggttgtcaactatgatcagaagagagctttttagttgtttttttccccgtttcggtttggttcatctggtgtaaaggaaagatgagttacatctattgctatggtgaactatcatctatctctaggtcaatcatctattttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="23002" stop="10383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22703" g_stop="22674" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="70" r_length="40" r_score="0.872"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.87"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="211" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="256" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="347" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="451" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20165" g_stop="19890" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="740" r_length="289" r_score="0.844"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19889" i_stop="19389" i_length="501">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19388" g_stop="19372" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="757" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E579818" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579818" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22703" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19890"/>
          <exon e_start="19388" e_stop="19372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACT-CTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGG-CTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGT-GCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGT-GCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTA-T--TA---TG-------ATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATGATCTTATTTCTCGAATTTTATTATCTTCTTGAAATTCATCGATGAATCGCATGAATACTGAAGAAGCTAAATATTCTTTTTTAATTTATTGCCTATTTATCCTGAATTAGTTTATATTGCTATATTTTTAATTATTGTCTTTTAGGTTTTACTTGTATATTTGAAAGTGTATTTAAGAGATTTGATATTACTGCTTCTCTATCTATACGTATTTTTTCAACTTGCGAATATAGCTTTAAGTGCGTTATTATATTATTAATATATATGATTGAATAATCCAACTAAAAAAAGTCAAATCAGAATAAGAAAAATCAAATTAAATTTATTTTAATCTGAATTTGAGTTATATATTTTTCAAACTGAAAACAAATAGTATAACATCAAATCAAATAATATTCAATACAAAAAAAGAAACAATAC</genome_strand>
        <mrna_strand>AGGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCGTAAAGAGGCCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGCGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGCTACAAAAACACCCGTCACCGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGGCCATGTAGCAACACCGCACCCTTCAAAACAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAACCCGTGGCAACAG.......................................................................................GATTTTTGGTTCTGAAGGTGGTTCTTGATTCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTGGTCTTTGTTTGGTTGTCAACTATGATCAGAAGAGAGC-TTTTTAGTTGTTTTTTTCCCCGTTTCGGTTTGGTTCATCTGGTGTAAAGGAAAGATGAGTTACATCTATTGCTATGGTGAACTATCATCTATCTCTAGGTCAATCATCTATTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371889" ref_strand="+" ref_description="SGN-E371889 [TUS-30-E18](-)">
      <seq>aacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttttaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttttgaaggtgctctcgaatttcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatttgatgtaaaggaaagatgagttacatttattatgatctatctttaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattacaatctcaatctatcattaagtatttactactttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="22714" stop="19497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22414" g_stop="22307" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="153" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="244" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="347" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20165" g_stop="19792" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="721" r_length="374" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E371889" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22414" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATG</genome_strand>
        <mrna_strand>AACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTTTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTTTGAAGGTGCTCTCGAATTTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATTTGATGTAAAGGAAAGATGAGTTACATTTATTATGATCTATCTTTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275788" ref_strand="-" ref_description="SGN-E275788 [cLEN-18-M4]">
      <seq>tcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattacaatctcaatctatcattaagtatttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="20573" stop="19507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20273" g_stop="20253" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20165" g_stop="19800" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="387" r_length="366" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E275788" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275788" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20273" e_stop="20253"/>
          <exon e_start="20165" e_stop="19800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTT</genome_strand>
        <mrna_strand>TCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715865" ref_strand="+" ref_description="SGN-E715865 [FB15BH12]">
      <seq>ctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactagtgttggcgttggtggcagacgaaacaaagggatatgcaaaacatggtaactgcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="22637" stop="19535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22337" g_stop="22307" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="76" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="167" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="270" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20165" g_stop="19846" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="590" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E715865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22337" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTA</genome_strand>
        <mrna_strand>CTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465178" ref_strand="+" ref_description="SGN-E465178 [cPRO-20-G10]">
      <seq>gatgactctgatgacagtgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcggctacaaaaacacccgtcaccgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtggccatgtagcaacaccgcacccttcaaaacaggctaataagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgattctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttggtctttgtttggttgtcaactatgatcagaagagagctttttagttgtttttttccccgtttcggtttggttcatctggtgtaaaggaaagatgagttacatctattgctatggtgaactatcatctatctctaggtcaatcatctattttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcaaagaatgttattgcctgttgggatcttgttatatgttggtataagaaattggattattgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="21041" stop="19561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20870" g_stop="20832" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="130" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="233" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20165" g_stop="19866" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="545" r_length="312" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E465178" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20870" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTA-T--TA---TG-------ATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTT</genome_strand>
        <mrna_strand>GATGACTCTGATGACAGTGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGCTACAAAAACACCCGTCACCGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGGCCATGTAGCAACACCGCACCCTTCAAAACAGGCTAATAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGATTCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTGGTCTTTGTTTGGTTGTCAACTATGATCAGAAGAGAGC-TTTTTAGTTGTTTTTTTCCCCGTTTCGGTTTGGTTCATCTGGTGTAAAGGAAAGATGAGTTACATCTATTGCTATGGTGAACTATCATCTATCTCTAGGTCAATCATCTATTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAAAGAATGTTATTGCCTGTTGGGATCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745576" ref_strand="+" ref_description="SGN-E745576 [GI|47105878]">
      <seq>gatagtacaccctagctgtctctttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgacagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcaccgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24735" stop="19591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24436" g_stop="24343" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="165" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="380" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="409" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="448" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="588" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="633" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="724" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="827" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20165" g_stop="19900" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="1093" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1097" polyA_stop="1114"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E745576" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1093</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24436" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTACACCCTAGCAGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGA</genome_strand>
        <mrna_strand>GATAGTACACCCTAGCTGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGACAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACCGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716887" ref_strand="+" ref_description="SGN-E716887 [FB18BC10]">
      <seq>agaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacgaaaacacctgtcactgataaaaaggcaaaattgacaacacctcacaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="22730" stop="19636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22430" g_stop="22307" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="260" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20165" g_stop="19933" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="596" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="611"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E716887" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22430" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGA</genome_strand>
        <mrna_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACGAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCACAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715556" ref_strand="+" ref_description="SGN-E715556 [FB14CE06]">
      <seq>agaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="22730" stop="19636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22430" g_stop="22307" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="260" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20165" g_stop="19933" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="596" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="612"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E715556" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22430" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="19933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGA</genome_strand>
        <mrna_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705729" ref_strand="+" ref_description="SGN-E705729 [FA27DH10]">
      <seq>ctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaangtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24677" stop="19756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24377" g_stop="24343" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="106" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="321" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="350" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="389" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="529" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="574" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="665" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="768" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20165" g_stop="20056" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="878" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E705729" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24377" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="20056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATC</genome_strand>
        <mrna_strand>CTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAANGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705645" ref_strand="+" ref_description="SGN-E705645 [FA27DA02]">
      <seq>taaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgccacaggagttttggttctgaaggtgctctcgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24693" stop="19835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24393" g_stop="24343" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="122" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="337" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="366" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="405" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="545" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="590" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="681" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="784" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20165" g_stop="20135" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="815" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E705645" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24393" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="20135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCT</genome_strand>
        <mrna_strand>TAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCCACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710902" ref_strand="+" ref_description="SGN-E710902 [FA57BC04]">
      <seq>cctttaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24697" stop="19842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24397" g_stop="24343" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="126" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="341" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="370" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="409" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="549" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="594" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="685" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="788" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20165" g_stop="20142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="812" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E710902" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24397" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="20142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCT</genome_strand>
        <mrna_strand>CCTTTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709053" ref_strand="+" ref_description="SGN-E709053 [FA42CC04]">
      <seq>cgctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24696" stop="19842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24396" g_stop="24343" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="125" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="340" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="369" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="408" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="548" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="593" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="685" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20253" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="788" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20165" g_stop="20142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="812" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E709053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24396" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20253"/>
          <exon e_start="20165" e_stop="20142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTC-AAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCT</genome_strand>
        <mrna_strand>CGCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452244" ref_strand="+" ref_description="SGN-E452244 [cSTS-16-K5]">
      <seq>gttttggggtgctgaggtgaaaagtggtgagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacaacaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagatgactctgatgacagtgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcggctacaaaaacacccgtcaccgataaaaaggcaaaattgacaacacctcaaaaaaactgatggcaaaaaaggtggtggccatgtagcaacaccgcacccttcaaaacaggctaataagactccaaaatcagctggatctcatcactgcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="23481" stop="19962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="79" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="294" r_length="215" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="323" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="362" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="502" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="547" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="639" r_length="92" r_score="0.945"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20355" g_stop="20262" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="733" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E452244" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTC-AAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCC</genome_strand>
        <mrna_strand>GTGCTGAGGTGAAAAGTGGTGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAACAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGATGACTCTGATGACAGTGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGCTACAAAAACACCCGTCACCGATAAAAAGGCAAAATTGACAACACCTCAAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGGCCATGTAGCAACACCGCACCCTTCAAAACAGGCTAATAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335549" ref_strand="+" ref_description="SGN-E335549 [cTOE-2-J5]">
      <seq>tttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcanaaaaggtggtgtccatgtagcaacaccgcacccttctagcangctagtaagactccaaaatagnctggatctcatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24702" stop="19969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24402" g_stop="24343" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="346" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="375" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="414" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="554" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="599" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="690" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20269" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="776" r_length="86" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E335549" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24402" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACT</genome_strand>
        <mrna_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCANAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCT-AGCANGCTAGTAAGACTCCAAAATAGNCTGGATCTCATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321444" ref_strand="+" ref_description="SGN-E321444 [cTOB-23-M8]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaagaaagcagaaagtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgatagaaaggcaagattgacaacaccctcaaaaactgatggcaagaaaaggtggtgtccatgtagcaacaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24714" stop="20021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24414" g_stop="24343" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="358" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="426" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="566" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="611" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="702" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20321" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="738" r_length="36" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E321444" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24414" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAA-AAAAGGTGGTGTCCATGTAGCAACACCG</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAAGAAAGCAGAAAGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAGAAAGGCAAGATTGACAACACCCTCAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAGAAAAGGTGGTGTCCATGTAGCAACACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585285" ref_strand="+" ref_description="SGN-E585285 [67743]">
      <seq>ctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattgggagaggatgaagacgactctgatgacagtgaggaggagacgccaaagaaggctgagcctgcaaaaaaagaggaaggcagattcagttacaaaaaacacccgtcaccgataaaaaggcaaaaattgacaacaccttcaaaaaacttgatggcaanaaaaggtgtgtggccaatgttagcaacaaaccgcaccctttcaaaaacagggctcattaaagactcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24694" stop="20344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24394" g_stop="24343" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="123" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="338" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="367" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="406" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="546" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="591" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="687" r_length="96" r_score="0.857"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.83"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20344" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="699" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E585285" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24394" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGC-AAAAAAGAGGAAGGCAGATTCAGCTAC-AAAAACACCTGTCACTGATAAAAAGGC-AAAATTGACAACACC-TCAAAAAACT-GGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAG</genome_strand>
        <mrna_strand>CTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGTGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAAGAGGAAGGCAGATTCAGTTACAAAAAACACCCGTCACCGATAAAAAGGCAAAAATTGACAACACCTTCAAAAAACTTG.....................................................................................................................................................................................................................................................................................................ATGGCAANAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371890" ref_strand="+" ref_description="SGN-E371890 [TUS-30-E18]">
      <seq>tcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24698" stop="20347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24398" g_stop="24343" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="342" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="371" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="410" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="550" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="595" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="686" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20348" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="694" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E371890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24398" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAA</genome_strand>
        <mrna_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572180" ref_strand="+" ref_description="SGN-E572180 [31294]">
      <seq>ctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggtgagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacaacaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccatttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagacgactctgatgacagcgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcggctacaaaaacacccgctcaccgataaaaaaggcaaaattgacaacaccttcaaaaaactgatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24694" stop="20347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24394" g_stop="24343" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="123" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="338" r_length="215" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="367" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="406" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="546" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="591" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="685" r_length="94" r_score="0.901"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293">
            <donor d_prob="0.998" d_score="0.83"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20355" g_stop="20348" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="693" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E572180" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24394" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
          <exon e_start="20355" e_stop="20348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTG-TCACTGAT-AAAAAGGCAAAATTGACAACACC-TCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAA</genome_strand>
        <mrna_strand>CTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGTGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAACAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCATTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGCGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGCTACAAAAACACCCGCTCACCGATAAAAAAGGCAAAATTGACAACACCTTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451073" ref_strand="+" ref_description="SGN-E451073 [cSTS-11-K22]">
      <seq>ctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagacgactctgatgacagtgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcggctacaaaaacacccgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24694" stop="20347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24394" g_stop="24343" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="123" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="338" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="367" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="406" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="546" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="591" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="682" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E451073" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24394" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG</genome_strand>
        <mrna_strand>CTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGTGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGCTACAAAAACACCCGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402535" ref_strand="+" ref_description="SGN-E402535 [PPC-8-C1]">
      <seq>taaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattgggagaggatgaagacgactctgatgacagtgaggaggagacgccaaagaaagctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacccgtccccgataaaaaggcaaaattgacaacacctcaaaaaaactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24693" stop="20347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24393" g_stop="24343" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="122" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="337" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="366" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="405" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="545" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="590" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="682" r_length="92" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E402535" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24393" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTC-AAAAAACTG</genome_strand>
        <mrna_strand>TAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGTGAGGAGGAGACGCCAAAGAAA............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCCGTCCCCGATAAAAAGGCAAAATTGACAACACCTCAAAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417660" ref_strand="+" ref_description="SGN-E417660 [STM-25-J2]">
      <seq>ctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattgggagaggatgaagacgactctgatgacagtgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacccgtcaccgataaaaaggcaaaattgacaacacctcaaaaaactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24667" stop="20347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24367" g_stop="24343" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="96" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="312" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="341" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="380" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="520" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="565" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="656" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E417660" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24367" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAG-AAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG</genome_strand>
        <mrna_strand>CTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGTGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCCGTCACCGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604000" ref_strand="+" ref_description="SGN-E604000 [67190]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggtgagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacaacaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccatttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagacgactctgatgacagcgaggaggagacgccaaagaaggctgagcctgcaaaaaagaggaaggcagattcggctacaaaaacacccgtcaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="20385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="343" r_length="215" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="372" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="411" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="551" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="596" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20685" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="651" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E604000" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTG</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGTGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAACAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCATTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGCGAGGAGGAGACGCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGCTACAAAAACACCCGTCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570264" ref_strand="+" ref_description="SGN-E570264 [14821]">
      <seq>catttctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagaacccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagacgactctgatgagagtgaggaggagactccaaagaaggctgagcctgcaaaaaagaggaaggcagattcgggtacaaaaacaaccgtcacgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24704" stop="20382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24404" g_stop="24343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="133" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="348" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="377" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="416" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="556" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="601" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20739" g_stop="20687" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="654" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E570264" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24404" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCAC</genome_strand>
        <mrna_strand>CATTTCTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAACCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACTCCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCGGGTACAAAAACAACCGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334934" ref_strand="+" ref_description="SGN-E334934 [cTOE-9-I19]">
      <seq>tgtcagtgaatattgatggcaagaaaaccttgttcttgggacacctcaactcagagaaggtgcctcaaccagcaatttgaccctggtttttgataaagacctttgaattatctcacaacttgaaaagtggcagtgtctaccttttttggataccaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="23279" stop="20528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22979" g_stop="22811" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="206" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="385" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="430" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20739" g_stop="20730" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="440" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E334934" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22979" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
          <exon e_start="20739" e_stop="20730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGTGAATATTGATGGCAAG-AAA-CTTGTTCTTGGGACA-CTCAACTCAGAGAAGGTGCCTCAA-CAGCAATTTGA-CCTGGTTTTTGATAAAGA-CTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTA-CTTTTTTGGATA-CAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTG</genome_strand>
        <mrna_strand>TGTCAGTGAATATTGATGGCAAGAAAACCTTGTTCTTGGGACACCTCAACTCAGAGAAGGTGCCTCAACCAGCAATTTGACCCTGGTTTTTGATAAAGACCTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACCTTTTTTGGATACCAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567349" ref_strand="+" ref_description="SGN-E567349 [11460]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagtattggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggcagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctactttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgaggcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaacgtgaggattgtggagcctactaaagatgatgcagatgagagctctgatgatgatgattctgacatgggagacgatgaagacgactctgatgaccgttgaggaggagacgccaaagaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="20531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="129" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="345" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="374" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="413" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="554" r_length="141" r_score="0.936"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20832" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="600" r_length="46" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E567349" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGG-AGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTAC-TTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGA-CCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAG-TGAGGAGGAGACACCAAAGAAG</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTATTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGCAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAACGTGAGGATTGTGGAGCCTACTAAAGATGATGCAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACCGTTGAGGAGGAGACGCCAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419169" ref_strand="+" ref_description="SGN-E419169 [STM-29-I11]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattgggagaggatgaagacgactctgatgacagtgaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="20546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="343" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="372" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="411" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="551" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20846" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="582" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E419169" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGG</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGTGAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467514" ref_strand="+" ref_description="SGN-E467514 [cSTB-49-O13]">
      <seq>ttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagacgactctgatgacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24695" stop="20551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24396" g_stop="24343" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="125" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="340" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="369" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="408" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="548" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20851" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="574" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E467514" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24396" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGA</genome_strand>
        <mrna_strand>TTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326158" ref_strand="+" ref_description="SGN-E326158 [cTOC-16-E7]">
      <seq>atttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24703" stop="20553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24403" g_stop="24343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="132" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="347" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="376" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="415" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="555" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20853" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="579" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E326158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24403" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGT</genome_strand>
        <mrna_strand>ATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328011" ref_strand="+" ref_description="SGN-E328011 [cTOC-22-I11]">
      <seq>agctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaatatccttttttatttgtctgttaacttttatttcttataggcatttatttttcgttcgatgtaaaattttgtgtatttgtttcattgactaaacttctgtggttcacggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgangattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaacacgactctgatgagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="23481" stop="20553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="88" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23025" g_stop="22674" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="440" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="479" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="619" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20876" g_stop="20853" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="643" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E328011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGT</genome_strand>
        <mrna_strand>GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACTAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGANGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACACGACTCTGATGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315526" ref_strand="+" ref_description="SGN-E315526 [cTOA-22-A19]">
      <seq>tttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaagatgaagacgactctgatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24702" stop="20554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24402" g_stop="24343" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="346" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="375" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="414" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="554" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20876" g_stop="20854" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="577" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E315526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24402" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
          <exon e_start="20876" e_stop="20854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAG</genome_strand>
        <mrna_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422533" ref_strand="+" ref_description="SGN-E422533 [STM-40-H15]">
      <seq>ctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattgggagaggtacaattgtttttatatgttcatggggtttaaattattgtcatggtcttttgtagtattagttagggcatccaatacaaggacaaaaaatgggtaccacttgtttaagtttgtttggttatttaactgaaatgctaaaatggcctactacnnttaccaaatgcttgtctaaaacgacgcttcataatctaaaatagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="23219" stop="21857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22919" g_stop="22811" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="138" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="177" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22446" g_stop="22153" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="471" r_length="294" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E422533" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22919" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATT</genome_strand>
        <mrna_strand>CTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGGAGAGGTACAATTGTTTTTATATGTTCATGGGGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGCATCCAATACAAGGACAAAAAATGGGTACCACTTGTTTAAGTTTGTTTGGTTATTTAACTGAAATGCTAAAATGGCCTACTACNNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448530" ref_strand="+" ref_description="SGN-E448530 [cSTS-3-B3]">
      <seq>ctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatcaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattgggagaggtacaattgtttttatatgttcatggggtttaaattattgtcatggtcttttgtagtattagttagggcatccaatacaaggacaaaaaatgggtaccacttgtttaagtttgtttggttatttaactgaaatgctaaaatggcctactnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="23219" stop="21855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22919" g_stop="22811" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="137" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="176" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22446" g_stop="22156" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="467" r_length="291" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="477"/>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E448530" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22919" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAA</genome_strand>
        <mrna_strand>CTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGAT-CAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGGAGAGGTACAATTGTTTTTATATGTTCATGGGGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGCATCCAATACAAGGACAAAAAATGGGTACCACTTGTTTAAGTTTGTTTGGTTATTTAACTGAAATGCTAAAATGGCCTACTNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449657" ref_strand="+" ref_description="SGN-E449657 [cSTS-7-K13]">
      <seq>tccatttctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggtgagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacaacaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagatgactctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24706" stop="22000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24406" g_stop="24343" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="135" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="350" r_length="215" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="379" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="418" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="558" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E449657" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24406" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG</genome_strand>
        <mrna_strand>TCCATTTCTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGTGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAACAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449656" ref_strand="+" ref_description="SGN-E449656 [cSTS-7-K11]">
      <seq>ccatttctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggtgagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacaacaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatgggagaggatgaagatgactctgatgacagtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24705" stop="22000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24405" g_stop="24343" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="134" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="349" r_length="215" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="378" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="417" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22307" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="557" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E449656" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24405" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG</genome_strand>
        <mrna_strand>CCATTTCTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGTGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAACAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306667" ref_strand="+" ref_description="SGN-E306667 [cLEY-19-C9]">
      <seq>tccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24706" stop="22010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24406" g_stop="24343" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="135" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="350" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="379" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="418" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22310" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="555" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E306667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24406" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGA</genome_strand>
        <mrna_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333123" ref_strand="+" ref_description="SGN-E333123 [cTOD-19-L17]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24714" stop="22011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24414" g_stop="24343" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="358" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="426" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22311" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="562" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E333123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24414" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339551" ref_strand="+" ref_description="SGN-E339551 [cTOE-16-I2]">
      <seq>tttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24702" stop="22011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24402" g_stop="24343" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="346" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="375" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="414" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22311" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="550" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E339551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24402" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449371" ref_strand="+" ref_description="SGN-E449371 [cSTS-6-C18]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="22011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="343" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="372" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="411" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22311" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="547" r_length="136" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E449371" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324313" ref_strand="+" ref_description="SGN-E324313 [cTOC-4-N12]">
      <seq>tcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcatgaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24698" stop="22011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24398" g_stop="24343" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="342" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="371" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="410" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22311" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="546" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E324313" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24398" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCATGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446783" ref_strand="+" ref_description="SGN-E446783 [cSTA-22-P20]">
      <seq>ctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatgattctgaattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24667" stop="22011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24367" g_stop="24343" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="96" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="311" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="340" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="379" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22311" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="515" r_length="136" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E446783" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24367" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>CTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTGAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566691" ref_strand="+" ref_description="SGN-E566691 [5130]">
      <seq>ctcttctaaaaccctaatttctctctaaaaacctaaaagcagctatggagttttggggtgctgagggtgaaaagtggagagcccttaactgtacagcctgggagatgggatggttttgcatctttcacaggcatctctcagtgagttgaagaacgataaatcagaaagtgtctgcttgtcagtgaatattgatggcccagaaacttgttctctgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgcacgcatgagagctctgatgatgatgattctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="22016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="130" r_length="73" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="347" r_length="217" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="376" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="415" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22315" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="549" r_length="134" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E566691" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGA-GGTGAAAAGTGGAGAGCCATTAACTGTACAGCCT-GGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGG-CAAGAAACTTGTTCT-TGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATG-AAG-ATGAGAGCTCTGATGATGATGGTTCTGACT</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAAACCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTCAGTGAGTTGAAGAACGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCCCAGAAACTTGTTCTCTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGCACGCATGAGAGCTCTGATGATGATGATTCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463757" ref_strand="+" ref_description="SGN-E463757 [cPRO-15-N2]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttgggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagagggctggaagtctaatgctggaaaggattctgcttcangaaagcagaaagtgaggattgtggagcctactnaagatgatgaagatgagagctctgatgatgatgattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="22018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="373" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="412" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22318" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="541" r_length="129" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E463757" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTT-GGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTG</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGGCTGGAAGTCTAATGCTGGAAAGGATTCTGCTTCANGAAAGCAGAAAGTGAGGATTGTGGAGCCTACTNAAGATGATGAAGATGAGAGCTCTGATGATGATGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324799" ref_strand="+" ref_description="SGN-E324799 [cTOC-8-M20]">
      <seq>tccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24706" stop="22025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24406" g_stop="24343" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="135" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="350" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="379" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="418" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22325" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="540" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E324799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24406" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGAT</genome_strand>
        <mrna_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337042" ref_strand="+" ref_description="SGN-E337042 [cTOE-20-N13]">
      <seq>cttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24711" stop="22066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24411" g_stop="24343" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="140" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="355" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="384" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="423" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22366" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="504" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E337042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24411" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGG</genome_strand>
        <mrna_strand>CTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590425" ref_strand="+" ref_description="SGN-E590425 [44021]">
      <seq>ccctaatttctctctaaanacctaaaagcagctatggagttttggggtgctgaggtgaaaagtggtgagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacaacaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccatttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24688" stop="22067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24388" g_stop="24343" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="117" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="332" r_length="215" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="361" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="400" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22367" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="480" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E590425" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24388" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTG</genome_strand>
        <mrna_strand>CCCTAATTTCTCTCTAAANACCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGTGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAACAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCATTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313816" ref_strand="+" ref_description="SGN-E313816 [cTOA-17-M15]">
      <seq>tctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24700" stop="22094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24400" g_stop="24343" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="129" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="344" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="373" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="412" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22394" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="465" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E313816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24400" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCT</genome_strand>
        <mrna_strand>TCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470837" ref_strand="+" ref_description="SGN-E470837 [cSTB-20-P15]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="22094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="343" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="372" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="411" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22394" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="464" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E470837" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCT</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446100" ref_strand="+" ref_description="SGN-E446100 [cSTA-19-P18]">
      <seq>ctccatttctgttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaaaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24707" stop="22099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24407" g_stop="24343" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="136" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="351" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="380" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="419" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22399" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="467" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E446100" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24407" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATT</genome_strand>
        <mrna_strand>CTCCATTTCTGTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAAAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443587" ref_strand="+" ref_description="SGN-E443587 [cSTA-39-A9]">
      <seq>ctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtggtaaacctgagcctaaagaggctgggaagtctaatgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24699" stop="22105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24399" g_stop="24343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="128" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="343" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="372" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="411" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22405" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="453" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E443587" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24399" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAA</genome_strand>
        <mrna_strand>CTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG..........................................................................................................GTAAACCTGAGCCTAAAGAGGCTGGGAAGTCTAATGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315403" ref_strand="+" ref_description="SGN-E315403 [cTOA-22-O3]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24714" stop="22250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24414" g_stop="24343" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="358" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="426" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22446" g_stop="22431" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="442" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E315403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24414" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
          <exon e_start="22446" e_stop="22431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAA</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446027" ref_strand="+" ref_description="SGN-E446027 [cSTA-19-P5]">
      <seq>taaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggctgtgtctacttttttagatacaaggcaactaacccgtttgaggaggaagaggatgacgaagatgattatgatgagtctgatgaggacatccccctcactcttgcaaacagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24674" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24374" g_stop="24343" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="103" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="318" r_length="215" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="347" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22553" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="386" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E446027" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24374" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG</genome_strand>
        <mrna_strand>TAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCTGTGTCTACTTTTTTAGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................AGTCTGATGAGGACATCCCCCTCACTCTTGCAAACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310009" ref_strand="+" ref_description="SGN-E310009 [cTOA-4-I19]">
      <seq>tctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcataaagtgcctgcttgtcagtgaatattgatggcaagaaacttgatcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggcttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaagcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24695" stop="22256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24395" g_stop="24343" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="124" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="339" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="368" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22556" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="404" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E310009" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24395" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACA</genome_strand>
        <mrna_strand>TCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCATAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGATCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGCTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAAGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283068" ref_strand="+" ref_description="SGN-E283068 [cLER-17-H14]">
      <seq>tcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaaaatgattatgatgattctgatgaggatatccccctcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24698" stop="22265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24398" g_stop="24343" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="342" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22674" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="371" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22591" g_stop="22565" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="398" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E283068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24398" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22674"/>
          <exon e_start="22591" e_stop="22565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTC</genome_strand>
        <mrna_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAAATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577048" ref_strand="+" ref_description="SGN-E577048 [32318]">
      <seq>acgaggctaaaacctaatttctctctaaaaccctacaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagataggataacatcaggaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacattcaactcagagaaggtgcctcaacagcaatttgacctgggttttgactagagactttgaattatcacacaacttgaaaagtggcagtgtctactttattggatacaaggcaactaacccgtttgaggaggaagaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24694" stop="22511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24400" g_stop="24343" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="129" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22811" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="348" r_length="219" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22702" g_stop="22692" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="359" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E577048" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24400" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22811"/>
          <exon e_start="22702" e_stop="22692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTA-AAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGA-AGGATAA-ATCA-GAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGA-TAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATG</genome_strand>
        <mrna_strand>ACGAGGCTAAAACC-TAATTTCTCTCTAAAACCCTACAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGATAGGATAACATCAGGAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACATTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGGTTTTGACTAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTATTGGATACAAGGCAACTAACCCGTTTGAGGA............................................................................................................GGAAGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315641" ref_strand="+" ref_description="SGN-E315641 [cTOA-22-N9]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24714" stop="22512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24414" g_stop="24343" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22812" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="357" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E315641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24414" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATG</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567449" ref_strand="+" ref_description="SGN-E567449 [11575]">
      <seq>atttctcttctaaaacctaatttctctaaaacctaaagcagctatggagtattggggtgctgcaagtgcaaagtggagaaccttaactgtacagcctggagcatgggatggttttgcatctttcacagcatctctagtgcagttgaagcacaggataaatccaaaagtgtctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaagtgcctcaacagcaatttgacctggtttttgatagagactttgaattatcacacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24703" stop="22517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24403" g_stop="24343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22817" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="337" r_length="210" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E567449" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24403" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTG-AGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAG-ATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAG-A-AGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTT</genome_strand>
        <mrna_strand>ATTTCTCTTCTAAAA-CCTAATTTC--TCTAAAA-CCT-AAAGCAGCTATGGAGTATTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGCAAGTGCAAAGTGGAGAACC-TTAACTGTACAGCCTGGAGCATGGGATGGTTTTGCATCTTTCACA-....................................................................................GCATCTCTAGTGCAGTTGAAGCACAGGATAAATCCAAAAGTGTCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAA-GTGCCTCAACAGCAATTTGACCTGGTTTTTGATAGAGACTTTGAATTATCACACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557389" ref_strand="+" ref_description="SGN-E557389 [16180]">
      <seq>ccatttctcttctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagcccttaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataacatcagaaagtgtctgcttgtcagtgaatattgattggccaagaaacttgtacttgggacactcacctcagagaaggtgcctcaacagcaatttgacctggttttcggatagagactttgaattatcacacaagttgaaaagtggcagtgtctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="-" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="24705" stop="22545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24405" g_stop="24343" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23180" g_stop="23110" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="134" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23025" g_stop="22845" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="319" r_length="185" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="-" ref_id="SGN-E557389" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24405" e_stop="24343"/>
          <exon e_start="23180" e_stop="23110"/>
          <exon e_start="23025" e_stop="22845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAA-ATCAGAAAGTGCCTGCTTGTCAGTGAATATTGA-TGG-CAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTT-TGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACT</genome_strand>
        <mrna_strand>CCATTTCTCTTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCCTTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAACATCAGAAAGTGTCTGCTTGTCAGTGAATATTGATTGGCCAAGAAACTTGTACTTGGGACACTCACCTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTCGGATAGAGACTTTGAATTATCACACAAGTTGAAAAGTGGCAGTGTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413823" ref_strand="+" ref_description="SGN-E413823 [STM-18-D1]">
      <seq>ctgaaccttcaaaatctgctaatggatctcaattatctcttcatttctctcactccatcatggacttcggttgctatgttgatcggttattttctctatttagctaccgttggatctattctacccggaaaacttgttcctggggcgactttatctgatggaactcgactacattatcgttgcaatggtttgttatcacttctgttgttggttttgcttcttggagttgggtcgcagatgaatcttgtttcacctactgctatagcagatagaggacttgagcttttgtccacaacatttatctttagtgttcttgtgacattgatgctttatttggttggcctgaactcacgtgcaaagagttcatcactgaaacctcatgtctcangaaatctaatccatgactggtggtttgggatacaactgaatcctgaattcatgggcattgatctcannattttctttgtagagctggtatgatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="27434" stop="31746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27733" g_stop="27801" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="27899" i_length="98">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27900" g_stop="28017" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="187" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28018" i_stop="28898" i_length="881">
            <donor d_prob="0.507" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28899" g_stop="28969" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="258" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28970" i_stop="29796" i_length="827">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29797" g_stop="29853" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29854" i_stop="29999" i_length="146">
            <donor d_prob="0.805" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30000" g_stop="30091" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="407" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30092" i_stop="30861" i_length="770">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30862" g_stop="30909" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="455" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30910" i_stop="31414" i_length="505">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.760" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31415" g_stop="31446" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="486" r_length="31" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E413823" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27733" e_stop="27801"/>
          <exon e_start="27900" e_stop="28017"/>
          <exon e_start="28899" e_stop="28969"/>
          <exon e_start="29797" e_stop="29853"/>
          <exon e_start="30000" e_stop="30091"/>
          <exon e_start="30862" e_stop="30909"/>
          <exon e_start="31415" e_stop="31446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACCTTCAATATCTGCTAATGGATCTCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCGGTCAGTATTTTTTCTTCTCTATTTGACTGTACATGTATCTATACAATCTGTGTGATTTTTTTTTTTTGCTGATTTTGTTCTTGTTTTGGTGAATATAGGTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATGGTAATGTGAATTGGTGTGTATTTTGATGAGTGGAGTCAGGATTTGAAGTTTATGGGTTTTGAGCTTGTTATCGAAAGCATTTAGTTAATGGGGGTTCGAATAATTTAAGCAAAAACTATTGAGTTCGTCTGGACTCTTGGTTAATGTTGTAGTTTTGTCTAGGGGATTTGAAGTTTATGGATTGTGAACTTTTTGTGGAACCCGTTCAGCTAAGCTATTGAGTTTGTTTGGACTCCTAGGGAATATTGTAGTTTTTCCTGGTGGGATTTGAGGTATATGGATTCTGAACTTGTTATCGAACCTGCTTAGTTAGTGGGTTGTTACTTGAATATTTATGCTTATCTAATGGATTTCCTAATACAATTATAAGGTTTAAGCAAAAGTTATTGGGTTTGTTTTAACTCCTATTTAATAGTGTAGTTTTGCTTGGACCCTTCGGGGTGGCTCAGTGGTTTGAGCTTGGGACTTCCATGTTGGACGTCTCAAGTTCGAAATCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGATCGAGAAAGCCTGGTGCGGGTTACGTCTCCTATGTGTTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCTGTGCGCACCCTTTAAGGGTAGGTTTCCCTTGTCATAAAAAAAATGTAGTTTTGCTTGGTAGGACTTTGAAGTTGATGGATTCTGAACTTCTTGATGAATATATAGCTCGTTTTTGGTAATGTCTTTGCGATTAATATATAAATGCTTATTTAATAGAGTCTGTGCAAAAACTATTGGGTTGGTTCAAACCCGTACTTAATACTGTAGCTCTGCCCTTGTATATTTTCATGTTTCTCCATGCGGGTTGAGCTTAGATTATTTGTTGTTGCTATTTCAGGTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACTGTGAGTGTGGAATATTTCTTTTGTAGCAAAGGATGTACTTTGGGTTCATTTGCATTCCCTGTTTATTAAGTTTGTTTGCACAAGTATTGCTTGTAAAACCTTCTTATGCGGATGAGCGAGGAACAATTTCTTGCTACACTTCGTGTAGAAGTGATGAGAGTGAGGATTTGTACTCATTGTTCCCAAGAGTCTCGTCTCCGGTGGAACAAATATTCTGTTGTTACTTTCTTTTCCTTGCATGGATGGTGAGATTGAGAAGCTGCATAATTTCACGTGAATTTATTCTTCCTTTTCATATCATTAAATTTAGGAACCAGGTTGTCATTTCAGTGAAAAAGAAATAATTGTGATATTATATGGCTTTCTCATTTCATACCAAAACCTTCAACAGAATTGGTGGTATGATGTCCAACTGCTGTAGTACCTTTCTGTTGTTTTTCCTCCTGCTTTTTTGATGACAATGTACTGTTAGCTTTTGTTCTTTTGTTATCTTTCTATTGTTGTCAATCTGATTTATCTTCATCGTCCCTGGAGAATTACTTGGTTAAGTACAAAACAAATTGTCAATCTGTTCATCTTCAATATCCCTATAGAATAACTTGGTGAAGTACAAAAACTGAAATAGAAGGACAAATTCTGCTGTTTACATGAGTGTACAAACTGGTTACTTAAAAGAACTTCACTTGGATCCAAAATTGCTCACAATGCTGCATCTTCAAATGATGCTGAAAACATGTGAAGGTCTAGAGTGTTGTATGTTTGGACAGGTTTTCTGTTTTTGGTATACTCATAAAGAGATGAAATCACCTATTCCTAATGCATTGCAGGCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTTGTAAGTGAAGAATGTCATACCATAAGAAAGTAATTTATTCTTGATTATGCTTTTATTGACACAAACTTTCTTGTTCTGCAAAAGTTTCTAGCAAGTTAGAAGTTTCATTCTGGTATCTTAATTGTGAATGGCTGAATGATATTTAGGTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTGGTAAGTCAATTGACTCTATGCTGTCGTTTATATTCTGAAAAGTTCTTAACACTAATAAAATGGTAATGTCATTCTTTATTGAACTGTCTTCCATCCATCCTTTGATCTATCTGTGTATTTATAAGACAGTTTGTGAATTGTTGTGAAGTTACCATTCAACATAAGATTTTTATTACTATTAAATAGTAAGAGCAGGAGTGAATAATTTTAATTTTCTCAATTAGTACCGGCATTTTGGCCTTTACCCAAGATATACTTAGATAACCATAGAATCGAGAGTTCTAATATATCTGTAATAATATATGACTATTAACAGTCATTAATTTTCTCACTTGACTCTGAGTGCACCTTAACAACCGGTAGTTCATTTTTCGGAAAAAGAAAAAGGAGAAGAATAATTTAGCTGTGGAAATTCATTGTTTTTCAGCTTTCATTAAAAAAGAGTAGGTTGATCTAGGTTTGACACATGACAACGAAAGTTTGTCGTTGAAGAGAACACCTCAGTATTATGAATCCTCAGCTCACTGCTGGAAAGCTTCTGCAATAGAAATCAGGGTAACATGATTTTGGCTATTATTCGACATATATAGGTAGTGATGGTCAAACACAGTACGAATATGGTTAAATTAAGCCGACTGTAGACTGATAACATCTTGTGTTTTCACCACATTGGAGCAAGATATTTATTTTGTTCTCTACATTAAGATTCTGTTGATTTTATTGTAATGAATACTCTCCTAATCTTTCTTCTATCCTATTTCCTTGACTAGGTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAAGTATGTACTCATATCTCAGACCTTGTCTTTCACCATTGTTACAAGTGAACATTGAGAATTCAAAGTTTTCATCAGGCTATAATTTGATTATTTAGTTTATTTTGTTCGATATGTCCGGTAGTAACTTTGCTTAATCCTTTTCATGTTAATGACCAATCCATAAGCACTCAGCAGTTCCCACCAATAGTGAATTGTATATTTTGTAACCTAATTTAGTTTAGCTCTAAAAATGCTTTCTTCTGCTACCTGAAGGAAGAAAATATAGAGAATCCTTAATTTGTTTGGAGTGAACTATTGATGTTTGGCATGAAAAACTTACATGTTTTTGATGAACCAGAACTCATTTTCTGTCAAACTCCAAGCATAGTTGAATTCCTAGTCGAAGAGATTTTGAGAGGCCAGAATAGTTATTTTTGTTGTAATGAACTAATGACTCTCAGCTTCAATCAAGGCTATTTGGTTATTTCTTTTGACTTCTCTGCTTATGATGAATTTTCTGCTGTAGATTTTTCTTTGTTAGAGCTGGTATGATGGGAT</genome_strand>
        <mrna_strand>CTGAACCTTCAAAATCTGCTAATGGATCTCAATTATCTCTTCATTTCTCTCACTCCATCATGGACTTCG..................................................................................................GTTGCTATGTTGATCGGTTATTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTACATTATCGTTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACATTTATCTTTAGTGTTCTT..................................................................................................................................................GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCANGAAATCTAATCCATGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAN.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NATTTTCTTTG-TAGAGCTGGTATGATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472803" ref_strand="+" ref_description="SGN-E472803 [cSTB-29-P20]">
      <seq>ctgaaccttcaaaatctgctaatggatctcaattatctcttcatttctctcactccatcatggacttcggttgctatgttgatcggttattttctctatttagctaccgttggatctattctacccggaaaacttgttcctggggcgactttatctgatggaactcgactacattatcgttgcaatggtttgttatcacttctgttgtcggttttgcttcttggagttgggtcgcagatgaatcttgtttcacctactgctatagcagatagaggacttgagcttttgtccacaacatttatctgtagtgttcttgtgacattgatgctttatttggttggcctgaactcacgtgcaaagagttcatcactgaaacctcatgtctcaggaaatctaatccatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="27434" stop="30389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27733" g_stop="27801" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="27899" i_length="98">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27900" g_stop="28017" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="187" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28018" i_stop="28898" i_length="881">
            <donor d_prob="0.507" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28899" g_stop="28969" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="258" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28970" i_stop="29796" i_length="827">
            <donor d_prob="0.303" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29797" g_stop="29853" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29854" i_stop="29999" i_length="146">
            <donor d_prob="0.805" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30000" g_stop="30089" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="405" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E472803" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27733" e_stop="27801"/>
          <exon e_start="27900" e_stop="28017"/>
          <exon e_start="28899" e_stop="28969"/>
          <exon e_start="29797" e_stop="29853"/>
          <exon e_start="30000" e_stop="30089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACCTTCAATATCTGCTAATGGATCTCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCGGTCAGTATTTTTTCTTCTCTATTTGACTGTACATGTATCTATACAATCTGTGTGATTTTTTTTTTTTGCTGATTTTGTTCTTGTTTTGGTGAATATAGGTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATGGTAATGTGAATTGGTGTGTATTTTGATGAGTGGAGTCAGGATTTGAAGTTTATGGGTTTTGAGCTTGTTATCGAAAGCATTTAGTTAATGGGGGTTCGAATAATTTAAGCAAAAACTATTGAGTTCGTCTGGACTCTTGGTTAATGTTGTAGTTTTGTCTAGGGGATTTGAAGTTTATGGATTGTGAACTTTTTGTGGAACCCGTTCAGCTAAGCTATTGAGTTTGTTTGGACTCCTAGGGAATATTGTAGTTTTTCCTGGTGGGATTTGAGGTATATGGATTCTGAACTTGTTATCGAACCTGCTTAGTTAGTGGGTTGTTACTTGAATATTTATGCTTATCTAATGGATTTCCTAATACAATTATAAGGTTTAAGCAAAAGTTATTGGGTTTGTTTTAACTCCTATTTAATAGTGTAGTTTTGCTTGGACCCTTCGGGGTGGCTCAGTGGTTTGAGCTTGGGACTTCCATGTTGGACGTCTCAAGTTCGAAATCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGATCGAGAAAGCCTGGTGCGGGTTACGTCTCCTATGTGTTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCTGTGCGCACCCTTTAAGGGTAGGTTTCCCTTGTCATAAAAAAAATGTAGTTTTGCTTGGTAGGACTTTGAAGTTGATGGATTCTGAACTTCTTGATGAATATATAGCTCGTTTTTGGTAATGTCTTTGCGATTAATATATAAATGCTTATTTAATAGAGTCTGTGCAAAAACTATTGGGTTGGTTCAAACCCGTACTTAATACTGTAGCTCTGCCCTTGTATATTTTCATGTTTCTCCATGCGGGTTGAGCTTAGATTATTTGTTGTTGCTATTTCAGGTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACTGTGAGTGTGGAATATTTCTTTTGTAGCAAAGGATGTACTTTGGGTTCATTTGCATTCCCTGTTTATTAAGTTTGTTTGCACAAGTATTGCTTGTAAAACCTTCTTATGCGGATGAGCGAGGAACAATTTCTTGCTACACTTCGTGTAGAAGTGATGAGAGTGAGGATTTGTACTCATTGTTCCCAAGAGTCTCGTCTCCGGTGGAACAAATATTCTGTTGTTACTTTCTTTTCCTTGCATGGATGGTGAGATTGAGAAGCTGCATAATTTCACGTGAATTTATTCTTCCTTTTCATATCATTAAATTTAGGAACCAGGTTGTCATTTCAGTGAAAAAGAAATAATTGTGATATTATATGGCTTTCTCATTTCATACCAAAACCTTCAACAGAATTGGTGGTATGATGTCCAACTGCTGTAGTACCTTTCTGTTGTTTTTCCTCCTGCTTTTTTGATGACAATGTACTGTTAGCTTTTGTTCTTTTGTTATCTTTCTATTGTTGTCAATCTGATTTATCTTCATCGTCCCTGGAGAATTACTTGGTTAAGTACAAAACAAATTGTCAATCTGTTCATCTTCAATATCCCTATAGAATAACTTGGTGAAGTACAAAAACTGAAATAGAAGGACAAATTCTGCTGTTTACATGAGTGTACAAACTGGTTACTTAAAAGAACTTCACTTGGATCCAAAATTGCTCACAATGCTGCATCTTCAAATGATGCTGAAAACATGTGAAGGTCTAGAGTGTTGTATGTTTGGACAGGTTTTCTGTTTTTGGTATACTCATAAAGAGATGAAATCACCTATTCCTAATGCATTGCAGGCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTTGTAAGTGAAGAATGTCATACCATAAGAAAGTAATTTATTCTTGATTATGCTTTTATTGACACAAACTTTCTTGTTCTGCAAAAGTTTCTAGCAAGTTAGAAGTTTCATTCTGGTATCTTAATTGTGAATGGCTGAATGATATTTAGGTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGAC</genome_strand>
        <mrna_strand>CTGAACCTTCAAAATCTGCTAATGGATCTCAATTATCTCTTCATTTCTCTCACTCCATCATGGACTTCG..................................................................................................GTTGCTATGTTGATCGGTTATTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTACATTATCGTTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTATCACTTCTGTTGTCGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACATTTATCTGTAGTGTTCTT..................................................................................................................................................GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340989" ref_strand="+" ref_description="SGN-E340989 [cTOF-5-J11]">
      <seq>tcaataatctcttcatttctctcactccatcatggacttcggtgtctatgttgatcggattttttctctatttagctaccgttggatctattctacccggaaaacttgttcctggggcgactttatctgatggaactcgactccattatcgttgcaatggtttattatcacttctgttgttggttttgcttcttggagttgggtcgcagatgaatcttgtttcacctactgctatagcagatagaggacttgagcttttgtccacaacacttatctttagtgttcttgtgacattgatgctttatttggttggcctgaactcacgtgcaaagagttcatcactgaaacctcatgtctcaggaaatctaatccatgactggtggtttgggatacaactgaatcctgaattcatgggcattgatctcaaatttttctttgttagagctggtatgatgggatggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0089I03-npLqx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0089I03.1" temp_strand="+" temp_description="C09SLf0089I03.1  AC234218.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0089I03 upload_account_name:spain (1 - 33962)">
        <position start="27461" stop="33068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27761" g_stop="27801" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="27899" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27900" g_stop="28017" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28018" i_stop="28898" i_length="881">
            <donor d_prob="0.507" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28899" g_stop="28969" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="230" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28970" i_stop="29796" i_length="827">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29797" g_stop="29853" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="287" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29854" i_stop="29999" i_length="146">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30000" g_stop="30091" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="379" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30092" i_stop="30861" i_length="770">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30862" g_stop="30909" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="427" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30910" i_stop="31414" i_length="505">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31415" g_stop="31535" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="548" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31536" i_stop="31624" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31625" g_stop="31671" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="595" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31672" i_stop="32731" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32732" g_stop="32768" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="632" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0089I03.1" gen_strand="+" ref_id="SGN-E340989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0089I03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27761" e_stop="27801"/>
          <exon e_start="27900" e_stop="28017"/>
          <exon e_start="28899" e_stop="28969"/>
          <exon e_start="29797" e_stop="29853"/>
          <exon e_start="30000" e_stop="30091"/>
          <exon e_start="30862" e_stop="30909"/>
          <exon e_start="31415" e_stop="31535"/>
          <exon e_start="31625" e_stop="31671"/>
          <exon e_start="32732" e_stop="32768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCGGTCAGTATTTTTTCTTCTCTATTTGACTGTACATGTATCTATACAATCTGTGTGATTTTTTTTTTTTGCTGATTTTGTTCTTGTTTTGGTGAATATAGGTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATGGTAATGTGAATTGGTGTGTATTTTGATGAGTGGAGTCAGGATTTGAAGTTTATGGGTTTTGAGCTTGTTATCGAAAGCATTTAGTTAATGGGGGTTCGAATAATTTAAGCAAAAACTATTGAGTTCGTCTGGACTCTTGGTTAATGTTGTAGTTTTGTCTAGGGGATTTGAAGTTTATGGATTGTGAACTTTTTGTGGAACCCGTTCAGCTAAGCTATTGAGTTTGTTTGGACTCCTAGGGAATATTGTAGTTTTTCCTGGTGGGATTTGAGGTATATGGATTCTGAACTTGTTATCGAACCTGCTTAGTTAGTGGGTTGTTACTTGAATATTTATGCTTATCTAATGGATTTCCTAATACAATTATAAGGTTTAAGCAAAAGTTATTGGGTTTGTTTTAACTCCTATTTAATAGTGTAGTTTTGCTTGGACCCTTCGGGGTGGCTCAGTGGTTTGAGCTTGGGACTTCCATGTTGGACGTCTCAAGTTCGAAATCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGATCGAGAAAGCCTGGTGCGGGTTACGTCTCCTATGTGTTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCTGTGCGCACCCTTTAAGGGTAGGTTTCCCTTGTCATAAAAAAAATGTAGTTTTGCTTGGTAGGACTTTGAAGTTGATGGATTCTGAACTTCTTGATGAATATATAGCTCGTTTTTGGTAATGTCTTTGCGATTAATATATAAATGCTTATTTAATAGAGTCTGTGCAAAAACTATTGGGTTGGTTCAAACCCGTACTTAATACTGTAGCTCTGCCCTTGTATATTTTCATGTTTCTCCATGCGGGTTGAGCTTAGATTATTTGTTGTTGCTATTTCAGGTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACTGTGAGTGTGGAATATTTCTTTTGTAGCAAAGGATGTACTTTGGGTTCATTTGCATTCCCTGTTTATTAAGTTTGTTTGCACAAGTATTGCTTGTAAAACCTTCTTATGCGGATGAGCGAGGAACAATTTCTTGCTACACTTCGTGTAGAAGTGATGAGAGTGAGGATTTGTACTCATTGTTCCCAAGAGTCTCGTCTCCGGTGGAACAAATATTCTGTTGTTACTTTCTTTTCCTTGCATGGATGGTGAGATTGAGAAGCTGCATAATTTCACGTGAATTTATTCTTCCTTTTCATATCATTAAATTTAGGAACCAGGTTGTCATTTCAGTGAAAAAGAAATAATTGTGATATTATATGGCTTTCTCATTTCATACCAAAACCTTCAACAGAATTGGTGGTATGATGTCCAACTGCTGTAGTACCTTTCTGTTGTTTTTCCTCCTGCTTTTTTGATGACAATGTACTGTTAGCTTTTGTTCTTTTGTTATCTTTCTATTGTTGTCAATCTGATTTATCTTCATCGTCCCTGGAGAATTACTTGGTTAAGTACAAAACAAATTGTCAATCTGTTCATCTTCAATATCCCTATAGAATAACTTGGTGAAGTACAAAAACTGAAATAGAAGGACAAATTCTGCTGTTTACATGAGTGTACAAACTGGTTACTTAAAAGAACTTCACTTGGATCCAAAATTGCTCACAATGCTGCATCTTCAAATGATGCTGAAAACATGTGAAGGTCTAGAGTGTTGTATGTTTGGACAGGTTTTCTGTTTTTGGTATACTCATAAAGAGATGAAATCACCTATTCCTAATGCATTGCAGGCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTTGTAAGTGAAGAATGTCATACCATAAGAAAGTAATTTATTCTTGATTATGCTTTTATTGACACAAACTTTCTTGTTCTGCAAAAGTTTCTAGCAAGTTAGAAGTTTCATTCTGGTATCTTAATTGTGAATGGCTGAATGATATTTAGGTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTGGTAAGTCAATTGACTCTATGCTGTCGTTTATATTCTGAAAAGTTCTTAACACTAATAAAATGGTAATGTCATTCTTTATTGAACTGTCTTCCATCCATCCTTTGATCTATCTGTGTATTTATAAGACAGTTTGTGAATTGTTGTGAAGTTACCATTCAACATAAGATTTTTATTACTATTAAATAGTAAGAGCAGGAGTGAATAATTTTAATTTTCTCAATTAGTACCGGCATTTTGGCCTTTACCCAAGATATACTTAGATAACCATAGAATCGAGAGTTCTAATATATCTGTAATAATATATGACTATTAACAGTCATTAATTTTCTCACTTGACTCTGAGTGCACCTTAACAACCGGTAGTTCATTTTTCGGAAAAAGAAAAAGGAGAAGAATAATTTAGCTGTGGAAATTCATTGTTTTTCAGCTTTCATTAAAAAAGAGTAGGTTGATCTAGGTTTGACACATGACAACGAAAGTTTGTCGTTGAAGAGAACACCTCAGTATTATGAATCCTCAGCTCACTGCTGGAAAGCTTCTGCAATAGAAATCAGGGTAACATGATTTTGGCTATTATTCGACATATATAGGTAGTGATGGTCAAACACAGTACGAATATGGTTAAATTAAGCCGACTGTAGACTGATAACATCTTGTGTTTTCACCACATTGGAGCAAGATATTTATTTTGTTCTCTACATTAAGATTCTGTTGATTTTATTGTAATGAATACTCTCCTAATCTTTCTTCTATCCTATTTCCTTGACTAGGTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAAGTATGTACTCATATCTCAGACCTTGTCTTTCACCATTGTTACAAGTGAACATTGAGAATTCAAAGTTTTCATCAGGCTATAATTTGATTATTTAGTTTATTTTGTTCGATATGTCCGGTAGTAACTTTGCTTAATCCTTTTCATGTTAATGACCAATCCATAAGCACTCAGCAGTTCCCACCAATAGTGAATTGTATATTTTGTAACCTAATTTAGTTTAGCTCTAAAAATGCTTTCTTCTGCTACCTGAAGGAAGAAAATATAGAGAATCCTTAATTTGTTTGGAGTGAACTATTGATGTTTGGCATGAAAAACTTACATGTTTTTGATGAACCAGAACTCATTTTCTGTCAAACTCCAAGCATAGTTGAATTCCTAGTCGAAGAGATTTTGAGAGGCCAGAATAGTTATTTTTGTTGTAATGAACTAATGACTCTCAGCTTCAATCAAGGCTATTTGGTTATTTCTTTTGACTTCTCTGCTTATGATGAATTTTCTGCTGTAGATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTG</genome_strand>
        <mrna_strand>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCG..................................................................................................GTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTT..................................................................................................................................................GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>482</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="851" PGL_stop="1496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="851" e_stop="1496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="851" e_stop="1496" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="851" stop="1496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTCTCTGTTACCAACATTTTTCAATAGCCATTAATACAGAGCTCTCATAAACAAAATTTAAAAAAATATTTGCTTTTTTTTTTTGCTCCCATTTCTTTTCTTCAAACACAAAATTAAACAACCCCATTTCCTTTTTTCTGATTTTTTTGTTGCAAAATTCAATTTTTTTCTACATTTTCTGAGAAAAAAAATTATTTAAGCCATAAATTTAGTGGTGAGTTTTAAGCTATTTGTCTGTCTTCTCTGACATTCCAATAGGATAAAAAAAATCTCACCTTTTTTCTGCAATTTTTTAGAAAAAAAAACACACTTTTTCAAGAATCCCCTGTTTTCACCCCCACCCCACCATTTTTTTTTTCATTTTTTGAAGAAAAAAAAGAATCTTTTTTGCTTTATAGCAAAATTTTGTGGTGGGTTTGAGCTATTTTCTGAATTTTTCACATTTTCAAGAATCCCCTGTTTTTTTTGTTCTTTTTTTTTGTATAATGGAGGGGTTATCAGGAACAAATATTGTTTATAATACATTTTATGAAACAAGAGATGATATAACAGAACAATTTGGTATAATGTGGGGACAAATCAAAGCTCCATTGATTGTTCCTCTTTTAAGGATTTCAGTTTTTTTATGTCTTGTTATGTCT</gDNA_template>
            <first_frame> S  L  S  L  L  P  T  F  F  N  S  H  *  Y  R  A  L  I  N  K  I  *  K  N  I  C  F  F  F  L  L  P  F  L  F  F  K  H  K  I  K  Q  P  H  F  L  F  S  D  F  F  V  A  K  F  N  F  F  L  H  F  L  R  K  K  I  I  *  A  I  N  L  V  V  S  F  K  L  F  V  C  L  L  *  H  S  N  R  I  K  K  I  S  P  F  F  C  N  F  L  E  K  K  T  H  F  F  K  N  P  L  F  S  P  P  P  H  H  F  F  F  H  F  L  K  K  K  K  N  L  F  C  F  I  A  K  F  C  G  G  F  E  L  F  S  E  F  F  T  F  S  R  I  P  C  F  F  C  S  F  F  L  Y  N  G  G  V  I  R  N  K  Y  C  L  *  Y  I  L  *  N  K  R  *  Y  N  R  T  I  W  Y  N  V  G  T  N  Q  S  S  I  D  C  S  S  F  K  D  F  S  F  F  M  S  C  Y  V  </first_frame>
            <second_frame>  L  S  L  C  Y  Q  H  F  S  I  A  I  N  T  E  L  S  *  T  K  F  K  K  I  F  A  F  F  F  C  S  H  F  F  S  S  N  T  K  L  N  N  P  I  S  F  F  L  I  F  L  L  Q  N  S  I  F  F  Y  I  F  *  E  K  K  L  F  K  P  *  I  *  W  *  V  L  S  Y  L  S  V  F  S  D  I  P  I  G  *  K  K  S  H  L  F  S  A  I  F  *  K  K  K  H  T  F  S  R  I  P  C  F  H  P  H  P  T  I  F  F  F  I  F  *  R  K  K  R  I  F  F  A  L  *  Q  N  F  V  V  G  L  S  Y  F  L  N  F  S  H  F  Q  E  S  P  V  F  F  V  L  F  F  C  I  M  E  G  L  S  G  T  N  I  V  Y  N  T  F  Y  E  T  R  D  D  I  T  E  Q  F  G  I  M  W  G  Q  I  K  A  P  L  I  V  P  L  L  R  I  S  V  F  L  C  L  V  M  S </second_frame>
            <third_frame>   S  L  S  V  T  N  I  F  Q  *  P  L  I  Q  S  S  H  K  Q  N  L  K  K  Y  L  L  F  F  F  A  P  I  S  F  L  Q  T  Q  N  *  T  T  P  F  P  F  F  *  F  F  C  C  K  I  Q  F  F  S  T  F  S  E  K  K  N  Y  L  S  H  K  F  S  G  E  F  *  A  I  C  L  S  S  L  T  F  Q  *  D  K  K  N  L  T  F  F  L  Q  F  F  R  K  K  N  T  L  F  Q  E  S  P  V  F  T  P  T  P  P  F  F  F  S  F  F  E  E  K  K  E  S  F  L  L  Y  S  K  I  L  W  W  V  *  A  I  F  *  I  F  H  I  F  K  N  P  L  F  F  L  F  F  F  F  V  *  W  R  G  Y  Q  E  Q  I  L  F  I  I  H  F  M  K  Q  E  M  I  *  Q  N  N  L  V  *  C  G  D  K  S  K  L  H  *  L  F  L  F  *  G  F  Q  F  F  Y  V  L  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1103" stop="1375"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSNRIKKISPFFCNFLEKKTHFFKNPLFSPPPHHFFFHFLKKKKNLFCFIAKFCGGFELFSEFFTFSRIPCFFCSFFLYNGGVIRNKYCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1254" stop="1496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNFVVGLSYFLNFSHFQESPVFFVLFFCIMEGLSGTNIVYNTFYETRDDITEQFGIMWGQIKAPLIVPLLRISVFLCLVMS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2825" PGL_stop="7618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2825" e_stop="3079"/>
            <exon e_start="5279" e_stop="5389"/>
            <exon e_start="5672" e_stop="5808"/>
            <exon e_start="6167" e_stop="6280"/>
            <exon e_start="6373" e_stop="6572"/>
            <exon e_start="6760" e_stop="6954"/>
            <exon e_start="7048" e_stop="7249"/>
            <exon e_start="7300" e_stop="7618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="0.980"/>
          <exon-intron don_prob="0.965" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.599" e_score="0.991"/>
          <exon-intron don_prob="0.984" acc_prob="0.961" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="2825" e_stop="3079" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="3080" i_stop="5278" i_length="2199"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="5279" e_stop="5389" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5390" i_stop="5671" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5672" e_stop="5808" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.668">
            <gDNA_intron_boundary i_start="5809" i_stop="6166" i_length="358"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="6167" e_stop="6280" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.599">
            <gDNA_intron_boundary i_start="6281" i_stop="6372" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="6373" e_stop="6572" e_length="200"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.961">
            <gDNA_intron_boundary i_start="6573" i_stop="6759" i_length="187"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="6760" e_stop="6954" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6955" i_stop="7047" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="7048" e_stop="7249" e_length="202"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7250" i_stop="7299" i_length="50"/>
          </intron>
          <exon e_serial="8" e_score="0.893">
            <gDNA_exon_boundary e_start="7300" e_stop="7618" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2825" stop="3079"/>
              <exon start="5279" stop="5389"/>
              <exon start="5672" stop="5808"/>
              <exon start="6167" stop="6280"/>
              <exon start="6373" stop="6551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2826" stop="3079"/>
              <exon start="5279" stop="5389"/>
              <exon start="5672" stop="5796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2827" stop="3079"/>
              <exon start="5279" stop="5389"/>
              <exon start="5672" stop="5808"/>
              <exon start="6167" stop="6214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6537" stop="6572"/>
              <exon start="6760" stop="6954"/>
              <exon start="7048" stop="7249"/>
              <exon start="7300" stop="7616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7352" stop="7618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTGGTGGAAATTGAATGCCAAAAATGGGCAAAAAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGGTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATG : TTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTAGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATG : GCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTTGGTTCTGTCAAG : GTAAAAAACGAATTACCAAGTACGTTGAAGGCCTATCGTTATCAACAACATCGTTGGTCCTGTGGCCCAGCCAATCTCTTCAGGAAAATGTGTATGGAGATCATAAGAAACAAG : AAAGTATCTTTGTGGAAAAAAGTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGGTCGTAGCTCATATTGTTACTTTCGTATTCTATGTTGTGGTATTACCCGCCACTGTATTAGTACCTGAAGTTGAGGTTCCGAAGTGGGGAGCTGTTTACATTCCTGCCATCATTACGCTTCTAAATGCTGTTGGAACTCCACG : GTCACTCCATCTGCTGGTATTTTGGATCCTTTTCGAGAATGTAATGTCACTCCACCGTACTAAGGCCACCTTCATCGGCTTGTTGGAGGCAGGACGAGTGAATGAATGGATTGTCACGGAGAAATTAGGGGACGCGCTGAAGTTAAAATCAGCTACCAAAGCGTTTAAAAAACATCGAATGAGGCTAGGTGACAG : GATCCATTTGTTAGAGTTTGCTGCTGGTGCATACCTCTTCTTCTGTGGATGTTATGACATTGCATTTGGTACTAACCACTATTTCCTCTACCTCTTCATTCAAGCATTCGCCTTTCTCATCGTTGGATTTGGTTACGTTGGTACTTTCGTCCCCAATTCATAATCAACGCTCGTGAAACTGATCTTATGGTATGAATCTTCA : GCGTTGAAGCGCCCTTTCTTGTTTTGGGGTGTTGTTTTTTGATCATTTTGTAAAGAGATAAATAGTTTGGTATATTCTTTTTAGGTCATTTCAAACATGAAAGTGATTCGAGCCCTGAGGGTCAGGGTCAGGGTCAGGGCTCGAATCGTGTTTGTTCTCTTTGTGTATATTCTCAGAAAGAGTCCTATGGTTAAATGCAGCATCATATACATAGGAAGGAAATGCAAAAAAGATATGATTTTTTTTTTCCTATTCATTTTACTGAGATGTAATTTGGTTTCAAATTTCAATGCAGAGCTAATGTTTACATTTCTCTACC</gDNA_template>
            <first_frame> K  I  W  W  K  L  N  A  K  N  G  Q  K  K  G  *  I  *  N  M  K  *  E  T  I  G  M  D  T  K  Q  V  L  *  K  K  D  *  N  I  L  M  *  N  N  V  I  L  L  V  F  L  M  L  I  F  N  L  N  L  I  F  Y  G  K  Q  F  H  F  *  F  T  I  M  N  F  H  L  F  K  L  G  G  N  M  :  L  M  L  M  N  V  *  *  Q  E  C  K  K  C  H  *  I  I  I  S  L  W  S  K  K  L  A  L  Q  H  M  L  F  S  D  L  M  :  A  L  Q  V  F  G  E  S  R  R  *  M  R  L  E  V  G  R  T  G  Q  R  L  R  I  W  T  S  L  S  V  L  V  S  R  D  G  N  S  C  S  L  V  L  S  R :   *  K  T  N  Y  Q  V  R  *  R  P  I  V  I  N  N  I  V  G  P  V  A  Q  P  I  S  S  G  K  C  V  W  R  S  *  E  T  R :   K  Y  L  C  G  K  K  F  M  *  F  T  A  S  S  S  L  G  R  S  *  L  I  L  L  L  S  Y  S  M  L  W  Y  Y  P  P  L  Y  *  Y  L  K  L  R  F  R  S  G  E  L  F  T  F  L  P  S  L  R  F  *  M  L  L  E  L  H   : G  H  S  I  C  W  Y  F  G  S  F  S  R  M  *  C  H  S  T  V  L  R  P  P  S  S  A  C  W  R  Q  D  E  *  M  N  G  L  S  R  R  N  *  G  T  R  *  S  *  N  Q  L  P  K  R  L  K  N  I  E  *  G  *  V  T   : G  S  I  C  *  S  L  L  L  V  H  T  S  S  S  V  D  V  M  T  L  H  L  V  L  T  T  I  S  S  T  S  S  F  K  H  S  P  F  S  S  L  D  L  V  T  L  V  L  S  S  P  I  H  N  Q  R  S  *  N  *  S  Y  G  M  N  L  Q :   R  *  S  A  L  S  C  F  G  V  L  F  F  D  H  F  V  K  R  *  I  V  W  Y  I  L  F  R  S  F  Q  T  *  K  *  F  E  P  *  G  S  G  S  G  S  G  L  E  S  C  L  F  S  L  C  I  F  S  E  R  V  L  W  L  N  A  A  S  Y  T  *  E  G  N  A  K  K  I  *  F  F  F  S  Y  S  F  Y  *  D  V  I  W  F  Q  I  S  M  Q  S  *  C  L  H  F  S  T </first_frame>
            <second_frame>  K  F  G  G  N  *  M  P  K  M  G  K  K  R  D  K  Y  K  I  *  S  E  R  Q  *  E  W  I  Q  S  R  C  F  E  R  R  I  E  T  F  L  C  E  T  M  *  F  C  W  Y  F  *  C  *  F  S  T  *  T  *  F  S  M  A  N  N  S  I  S  S  S  Q  S  *  T  F  T  C  S  S  *  V  E  I  C :   *  C  *  *  M  S  N  D  K  N  A  R  N  V  I  R  L  S  F  L  C  G  A  R  S  W  L  F  N  T  C  F  F  R  I  *  W :   H  C  R  C  L  E  N  R  G  D  R  *  G  W  R  L  E  G  Q  D  N  G  *  G  Y  G  P  R  C  P  C  *  S  Q  G  M  E  I  L  V  P  W  F  C  Q   : G  K  K  R  I  T  K  Y  V  E  G  L  S  L  S  T  T  S  L  V  L  W  P  S  Q  S  L  Q  E  N  V  Y  G  D  H  K  K  Q   : E  S  I  F  V  E  K  S  S  C  D  L  Q  L  L  L  R  *  E  G  R  S  S  Y  C  Y  F  R  I  L  C  C  G  I  T  R  H  C  I  S  T  *  S  *  G  S  E  V  G  S  C  L  H  S  C  H  H  Y  A  S  K  C  C  W  N  S  T  :  V  T  P  S  A  G  I  L  D  P  F  R  E  C  N  V  T  P  P  Y  *  G  H  L  H  R  L  V  G  G  R  T  S  E  *  M  D  C  H  G  E  I  R  G  R  A  E  V  K  I  S  Y  Q  S  V  *  K  T  S  N  E  A  R  *  Q  :  D  P  F  V  R  V  C  C  W  C  I  P  L  L  L  W  M  L  *  H  C  I  W  Y  *  P  L  F  P  L  P  L  H  S  S  I  R  L  S  H  R  W  I  W  L  R  W  Y  F  R  P  Q  F  I  I  N  A  R  E  T  D  L  M  V  *  I  F   : S  V  E  A  P  F  L  V  L  G  C  C  F  L  I  I  L  *  R  D  K  *  F  G  I  F  F  L  G  H  F  K  H  E  S  D  S  S  P  E  G  Q  G  Q  G  Q  G  S  N  R  V  C  S  L  C  V  Y  S  Q  K  E  S  Y  G  *  M  Q  H  H  I  H  R  K  E  M  Q  K  R  Y  D  F  F  F  P  I  H  F  T  E  M  *  F  G  F  K  F  Q  C  R  A  N  V  Y  I  S  L   </second_frame>
            <third_frame>   N  L  V  E  I  E  C  Q  K  W  A  K  K  G  I  N  I  K  Y  E  V  R  D  N  R  N  G  Y  K  A  G  A  L  K  E  G  L  K  H  S  Y  V  K  Q  C  D  F  V  G  I  F  D  A  D  F  Q  P  E  P  D  F  L  W  Q  T  I  P  F  L  V  H  N  H  E  L  S  L  V  Q  A  R  W  K  Y   : V  N  A  D  E  C  L  M  T  R  M  Q  E  M  S  L  D  Y  H  F  S  V  E  Q  E  V  G  S  S  T  H  A  F  F  G  F  N   : G  T  A  G  V  W  R  I  A  A  I  D  E  A  G  G  W  K  D  R  T  T  V  E  D  M  D  L  A  V  R  A  S  L  K  G  W  K  F  L  F  L  G  S  V  K  :  V  K  N  E  L  P  S  T  L  K  A  Y  R  Y  Q  Q  H  R  W  S  C  G  P  A  N  L  F  R  K  M  C  M  E  I  I  R  N  K  :  K  V  S  L  W  K  K  V  H  V  I  Y  S  F  F  F  V  R  K  V  V  A  H  I  V  T  F  V  F  Y  V  V  V  L  P  A  T  V  L  V  P  E  V  E  V  P  K  W  G  A  V  Y  I  P  A  I  I  T  L  L  N  A  V  G  T  P  R :   S  L  H  L  L  V  F  W  I  L  F  E  N  V  M  S  L  H  R  T  K  A  T  F  I  G  L  L  E  A  G  R  V  N  E  W  I  V  T  E  K  L  G  D  A  L  K  L  K  S  A  T  K  A  F  K  K  H  R  M  R  L  G  D  R :   I  H  L  L  E  F  A  A  G  A  Y  L  F  F  C  G  C  Y  D  I  A  F  G  T  N  H  Y  F  L  Y  L  F  I  Q  A  F  A  F  L  I  V  G  F  G  Y  V  G  T  F  V  P  N  S  *  S  T  L  V  K  L  I  L  W  Y  E  S  S  :  A  L  K  R  P  F  L  F  W  G  V  V  F  *  S  F  C  K  E  I  N  S  L  V  Y  S  F  *  V  I  S  N  M  K  V  I  R  A  L  R  V  R  V  R  V  R  A  R  I  V  F  V  L  F  V  Y  I  L  R  K  S  P  M  V  K  C  S  I  I  Y  I  G  R  K  C  K  K  D  M  I  F  F  F  L  F  I  L  L  R  C  N  L  V  S  N  F  N  A  E  L  M  F  T  F  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2827" stop="3079"/>
                    <exon start="5279" stop="5389"/>
                    <exon start="5672" stop="5808"/>
                    <exon start="6167" stop="6280"/>
                    <exon start="6373" stop="6572"/>
                    <exon start="6760" stop="6954"/>
                    <exon start="7048" stop="7210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLVEIECQKWAKKGINIKYEVRDNRNGYKAGALKEGLKHSYVKQCDFVGIFDADFQPEPDFLWQTIPFLVHNHELSLVQARWKYVNADECLMTRMQEMSLDYHFSVEQEVGSSTHAFFGFNGTAGVWRIAAIDEAGGWKDRTTVEDMDLAVRASLKGWKFLFLGSVKVKNELPSTLKAYRYQQHRWSCGPANLFRKMCMEIIRNKKVSLWKKVHVIYSFFFVRKVVAHIVTFVFYVVVLPATVLVPEVEVPKWGAVYIPAIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWIVTEKLGDALKLKSATKAFKKHRMRLGDRIHLLEFAAGAYLFFCGCYDIAFGTNHYFLYLFIQAFAFLIVGFGYVGTFVPNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7384" stop="7617"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISNMKVIRALRVRVRVRARIVFVLFVYILRKSPMVKCSIIYIGRKCKKDMIFFFLFILLRCNLVSNFNAELMFTFLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2825" e_stop="3079"/>
            <exon e_start="5279" e_stop="5389"/>
            <exon e_start="5672" e_stop="5808"/>
            <exon e_start="6167" e_stop="6280"/>
            <exon e_start="6373" e_stop="6572"/>
            <exon e_start="6760" e_stop="6954"/>
            <exon e_start="7048" e_stop="7294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="0.980"/>
          <exon-intron don_prob="0.965" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.599" e_score="0.991"/>
          <exon-intron don_prob="0.984" acc_prob="0.961" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="2825" e_stop="3079" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="3080" i_stop="5278" i_length="2199"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="5279" e_stop="5389" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5390" i_stop="5671" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5672" e_stop="5808" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.668">
            <gDNA_intron_boundary i_start="5809" i_stop="6166" i_length="358"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="6167" e_stop="6280" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.599">
            <gDNA_intron_boundary i_start="6281" i_stop="6372" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="6373" e_stop="6572" e_length="200"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.961">
            <gDNA_intron_boundary i_start="6573" i_stop="6759" i_length="187"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6760" e_stop="6954" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6955" i_stop="7047" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7048" e_stop="7294" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2825" stop="3079"/>
              <exon start="5279" stop="5389"/>
              <exon start="5672" stop="5808"/>
              <exon start="6167" stop="6280"/>
              <exon start="6373" stop="6551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2826" stop="3079"/>
              <exon start="5279" stop="5389"/>
              <exon start="5672" stop="5796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2827" stop="3079"/>
              <exon start="5279" stop="5389"/>
              <exon start="5672" stop="5808"/>
              <exon start="6167" stop="6214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6514" stop="6572"/>
              <exon start="6760" stop="6954"/>
              <exon start="7048" stop="7294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTGGTGGAAATTGAATGCCAAAAATGGGCAAAAAAAGGGATAAATATAAAATATGAAGTGAGAGACAATAGGAATGGATACAAAGCAGGTGCTTTGAAAGAAGGATTGAAACATTCTTATGTGAAACAATGTGATTTTGTTGGTATTTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTATGGCAAACAATTCCATTTCTAGTTCACAATCATGAACTTTCACTTGTTCAAGCTAGGTGGAAATATG : TTAATGCTGATGAATGTCTAATGACAAGAATGCAAGAAATGTCATTAGATTATCATTTCTCTGTGGAGCAAGAAGTTGGCTCTTCAACACATGCTTTTTTCGGATTTAATG : GCACTGCAGGTGTTTGGAGAATCGCGGCGATAGATGAGGCTGGAGGTTGGAAGGACAGGACAACGGTTGAGGATATGGACCTCGCTGTCCGTGCTAGTCTCAAGGGATGGAAATTCTTGTTCCTTGGTTCTGTCAAG : GTAAAAAACGAATTACCAAGTACGTTGAAGGCCTATCGTTATCAACAACATCGTTGGTCCTGTGGCCCAGCCAATCTCTTCAGGAAAATGTGTATGGAGATCATAAGAAACAAG : AAAGTATCTTTGTGGAAAAAAGTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGGTCGTAGCTCATATTGTTACTTTCGTATTCTATGTTGTGGTATTACCCGCCACTGTATTAGTACCTGAAGTTGAGGTTCCGAAGTGGGGAGCTGTTTACATTCCTGCCATCATTACGCTTCTAAATGCTGTTGGAACTCCACG : GTCACTCCATCTGCTGGTATTTTGGATCCTTTTCGAGAATGTAATGTCACTCCACCGTACTAAGGCCACCTTCATCGGCTTGTTGGAGGCAGGACGAGTGAATGAATGGATTGTCACGGAGAAATTAGGGGACGCGCTGAAGTTAAAATCAGCTACCAAAGCGTTTAAAAAACATCGAATGAGGCTAGGTGACAG : GATCCATTTGTTAGAGTTTGCTGCTGGTGCATACCTCTTCTTCTGTGGATGTTATGACATTGCATTTGGTACTAACCACTATTTCCTCTACCTCTTCATTCAAGCATTCGCCTTTCTCATCGTTGGATTTGGTTACGTTGGTACTTTCGTCCCCAATTCATAATCAACGCTCGTGAAACTGATCTTATGGTATGAATCTTCAGCTTTTTCGCCCTGTGCTCCCCTCTCAGTAGCACCAAAAAAAAAA</gDNA_template>
            <first_frame> K  I  W  W  K  L  N  A  K  N  G  Q  K  K  G  *  I  *  N  M  K  *  E  T  I  G  M  D  T  K  Q  V  L  *  K  K  D  *  N  I  L  M  *  N  N  V  I  L  L  V  F  L  M  L  I  F  N  L  N  L  I  F  Y  G  K  Q  F  H  F  *  F  T  I  M  N  F  H  L  F  K  L  G  G  N  M  :  L  M  L  M  N  V  *  *  Q  E  C  K  K  C  H  *  I  I  I  S  L  W  S  K  K  L  A  L  Q  H  M  L  F  S  D  L  M  :  A  L  Q  V  F  G  E  S  R  R  *  M  R  L  E  V  G  R  T  G  Q  R  L  R  I  W  T  S  L  S  V  L  V  S  R  D  G  N  S  C  S  L  V  L  S  R :   *  K  T  N  Y  Q  V  R  *  R  P  I  V  I  N  N  I  V  G  P  V  A  Q  P  I  S  S  G  K  C  V  W  R  S  *  E  T  R :   K  Y  L  C  G  K  K  F  M  *  F  T  A  S  S  S  L  G  R  S  *  L  I  L  L  L  S  Y  S  M  L  W  Y  Y  P  P  L  Y  *  Y  L  K  L  R  F  R  S  G  E  L  F  T  F  L  P  S  L  R  F  *  M  L  L  E  L  H   : G  H  S  I  C  W  Y  F  G  S  F  S  R  M  *  C  H  S  T  V  L  R  P  P  S  S  A  C  W  R  Q  D  E  *  M  N  G  L  S  R  R  N  *  G  T  R  *  S  *  N  Q  L  P  K  R  L  K  N  I  E  *  G  *  V  T   : G  S  I  C  *  S  L  L  L  V  H  T  S  S  S  V  D  V  M  T  L  H  L  V  L  T  T  I  S  S  T  S  S  F  K  H  S  P  F  S  S  L  D  L  V  T  L  V  L  S  S  P  I  H  N  Q  R  S  *  N  *  S  Y  G  M  N  L  Q  L  F  R  P  V  L  P  S  Q  *  H  Q  K  K   </first_frame>
            <second_frame>  K  F  G  G  N  *  M  P  K  M  G  K  K  R  D  K  Y  K  I  *  S  E  R  Q  *  E  W  I  Q  S  R  C  F  E  R  R  I  E  T  F  L  C  E  T  M  *  F  C  W  Y  F  *  C  *  F  S  T  *  T  *  F  S  M  A  N  N  S  I  S  S  S  Q  S  *  T  F  T  C  S  S  *  V  E  I  C :   *  C  *  *  M  S  N  D  K  N  A  R  N  V  I  R  L  S  F  L  C  G  A  R  S  W  L  F  N  T  C  F  F  R  I  *  W :   H  C  R  C  L  E  N  R  G  D  R  *  G  W  R  L  E  G  Q  D  N  G  *  G  Y  G  P  R  C  P  C  *  S  Q  G  M  E  I  L  V  P  W  F  C  Q   : G  K  K  R  I  T  K  Y  V  E  G  L  S  L  S  T  T  S  L  V  L  W  P  S  Q  S  L  Q  E  N  V  Y  G  D  H  K  K  Q   : E  S  I  F  V  E  K  S  S  C  D  L  Q  L  L  L  R  *  E  G  R  S  S  Y  C  Y  F  R  I  L  C  C  G  I  T  R  H  C  I  S  T  *  S  *  G  S  E  V  G  S  C  L  H  S  C  H  H  Y  A  S  K  C  C  W  N  S  T  :  V  T  P  S  A  G  I  L  D  P  F  R  E  C  N  V  T  P  P  Y  *  G  H  L  H  R  L  V  G  G  R  T  S  E  *  M  D  C  H  G  E  I  R  G  R  A  E  V  K  I  S  Y  Q  S  V  *  K  T  S  N  E  A  R  *  Q  :  D  P  F  V  R  V  C  C  W  C  I  P  L  L  L  W  M  L  *  H  C  I  W  Y  *  P  L  F  P  L  P  L  H  S  S  I  R  L  S  H  R  W  I  W  L  R  W  Y  F  R  P  Q  F  I  I  N  A  R  E  T  D  L  M  V  *  I  F  S  F  F  A  L  C  S  P  L  S  S  T  K  K  K  </second_frame>
            <third_frame>   N  L  V  E  I  E  C  Q  K  W  A  K  K  G  I  N  I  K  Y  E  V  R  D  N  R  N  G  Y  K  A  G  A  L  K  E  G  L  K  H  S  Y  V  K  Q  C  D  F  V  G  I  F  D  A  D  F  Q  P  E  P  D  F  L  W  Q  T  I  P  F  L  V  H  N  H  E  L  S  L  V  Q  A  R  W  K  Y   : V  N  A  D  E  C  L  M  T  R  M  Q  E  M  S  L  D  Y  H  F  S  V  E  Q  E  V  G  S  S  T  H  A  F  F  G  F  N   : G  T  A  G  V  W  R  I  A  A  I  D  E  A  G  G  W  K  D  R  T  T  V  E  D  M  D  L  A  V  R  A  S  L  K  G  W  K  F  L  F  L  G  S  V  K  :  V  K  N  E  L  P  S  T  L  K  A  Y  R  Y  Q  Q  H  R  W  S  C  G  P  A  N  L  F  R  K  M  C  M  E  I  I  R  N  K  :  K  V  S  L  W  K  K  V  H  V  I  Y  S  F  F  F  V  R  K  V  V  A  H  I  V  T  F  V  F  Y  V  V  V  L  P  A  T  V  L  V  P  E  V  E  V  P  K  W  G  A  V  Y  I  P  A  I  I  T  L  L  N  A  V  G  T  P  R :   S  L  H  L  L  V  F  W  I  L  F  E  N  V  M  S  L  H  R  T  K  A  T  F  I  G  L  L  E  A  G  R  V  N  E  W  I  V  T  E  K  L  G  D  A  L  K  L  K  S  A  T  K  A  F  K  K  H  R  M  R  L  G  D  R :   I  H  L  L  E  F  A  A  G  A  Y  L  F  F  C  G  C  Y  D  I  A  F  G  T  N  H  Y  F  L  Y  L  F  I  Q  A  F  A  F  L  I  V  G  F  G  Y  V  G  T  F  V  P  N  S  *  S  T  L  V  K  L  I  L  W  Y  E  S  S  A  F  S  P  C  A  P  L  S  V  A  P  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2827" stop="3079"/>
                    <exon start="5279" stop="5389"/>
                    <exon start="5672" stop="5808"/>
                    <exon start="6167" stop="6280"/>
                    <exon start="6373" stop="6572"/>
                    <exon start="6760" stop="6954"/>
                    <exon start="7048" stop="7210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLVEIECQKWAKKGINIKYEVRDNRNGYKAGALKEGLKHSYVKQCDFVGIFDADFQPEPDFLWQTIPFLVHNHELSLVQARWKYVNADECLMTRMQEMSLDYHFSVEQEVGSSTHAFFGFNGTAGVWRIAAIDEAGGWKDRTTVEDMDLAVRASLKGWKFLFLGSVKVKNELPSTLKAYRYQQHRWSCGPANLFRKMCMEIIRNKKVSLWKKVHVIYSFFFVRKVVAHIVTFVFYVVVLPATVLVPEVEVPKWGAVYIPAIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWIVTEKLGDALKLKSATKAFKKHRMRLGDRIHLLEFAAGAYLFFCGCYDIAFGTNHYFLYLFIQAFAFLIVGFGYVGTFVPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12099" PGL_stop="16914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12099" e_stop="12250"/>
            <exon e_start="12853" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13805"/>
            <exon e_start="13905" e_stop="13991"/>
            <exon e_start="14081" e_stop="14161"/>
            <exon e_start="14663" e_stop="14764"/>
            <exon e_start="14842" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12099" e_stop="12250" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12853" e_stop="12916" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13805" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13905" e_stop="13991" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.636" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14081" e_stop="14161" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14663" e_stop="14764" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14842" e_stop="14922" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15110" e_stop="15184" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15270" e_stop="15332" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15425" e_stop="15502" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15610" e_stop="15804" e_length="195"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15992" e_length="51"/>
          </exon>
          <intron i_serial="13" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16167" e_length="89"/>
          </exon>
          <intron i_serial="14" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12099" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12125" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12125" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCCAATTTGTTCATTGAAAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> S  H  P  I  C  S  L  K  K  K  N  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </first_frame>
            <second_frame>  L  I  Q  F  V  H  *  K  K  K  T  I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </second_frame>
            <third_frame>   S  S  N  L  F  I  E  K  K  K  L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12099" e_stop="12250"/>
            <exon e_start="12853" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13805"/>
            <exon e_start="13905" e_stop="13991"/>
            <exon e_start="14081" e_stop="14161"/>
            <exon e_start="14663" e_stop="14764"/>
            <exon e_start="14842" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15487"/>
            <exon e_start="16301" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12099" e_stop="12250" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12853" e_stop="12916" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13805" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99"/>
          </intron>
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              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13621" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13622" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13623" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13623" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13639" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13639" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13645" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13646" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13653" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13653" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13653" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
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              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13655" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13655" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13657" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13666" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13666" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13761" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
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              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13765" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13767" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13793" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13803" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13922" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13935" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13942" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13942" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13943" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13958" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
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              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13960" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13963" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
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              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14093" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14095" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14696" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
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              <exon start="15425" stop="15487"/>
              <exon start="16301" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14702" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15487"/>
              <exon start="16301" stop="16323"/>
              <exon start="16405" stop="16451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14894" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
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              <exon start="16301" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428128" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14901" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCCAATTTGTTCATTGAAAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTG : ATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</gDNA_template>
            <first_frame> S  H  P  I  C  S  L  K  K  K  N  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  * :   S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F   </first_frame>
            <second_frame>  L  I  Q  F  V  H  *  K  K  K  T  I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P   : D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  </second_frame>
            <third_frame>   S  S  N  L  F  I  E  K  K  K  L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  :  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15487"/>
                    <exon start="16301" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLILLSVCQRDKSRLELLAGQSVSPSTTSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12099" e_stop="12250"/>
            <exon e_start="12853" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13805"/>
            <exon e_start="13905" e_stop="13991"/>
            <exon e_start="14081" e_stop="14161"/>
            <exon e_start="14663" e_stop="14764"/>
            <exon e_start="14842" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15488"/>
            <exon e_start="16302" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12099" e_stop="12250" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12853" e_stop="12916" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13805" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13905" e_stop="13991" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.636" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14081" e_stop="14161" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14663" e_stop="14764" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14842" e_stop="14922" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15110" e_stop="15184" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15270" e_stop="15332" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15425" e_stop="15488" e_length="64"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15489" i_stop="16301" i_length="813"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="16302" e_stop="16323" e_length="22"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="14" e_score="0.997">
            <gDNA_exon_boundary e_start="16555" e_stop="16906" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12099" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12125" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273173" strand="+"/>
          </PGS_line>
          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13657" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13666" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13666" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13761" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13765" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13767" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13793" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13803" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13922" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13935" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13942" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13942" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13943" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13958" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13960" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13963" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14093" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14095" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14697" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15488"/>
              <exon start="16302" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14901" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCCAATTTGTTCATTGAAAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGA : TCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</gDNA_template>
            <first_frame> S  H  P  I  C  S  L  K  K  K  N  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  :  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F   </first_frame>
            <second_frame>  L  I  Q  F  V  H  *  K  K  K  T  I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  D :   L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  </second_frame>
            <third_frame>   S  S  N  L  F  I  E  K  K  K  L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L   : I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15488"/>
                    <exon start="16302" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLILLSVCQRDKSRLELLAGQSVSPSTTSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
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          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCCAATTTGTTCATTGAAAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGAC : CTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</gDNA_template>
            <first_frame> S  H  P  I  C  S  L  K  K  K  N  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T :   *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F   </first_frame>
            <second_frame>  L  I  Q  F  V  H  *  K  K  K  T  I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *   : P  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  </second_frame>
            <third_frame>   S  S  N  L  F  I  E  K  K  K  L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  :  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15484"/>
                    <exon start="16298" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLILLSVCQRDKSRLELLAGQSVSPSTTSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="12849" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13805"/>
            <exon e_start="13905" e_stop="13991"/>
            <exon e_start="14081" e_stop="14161"/>
            <exon e_start="14663" e_stop="14764"/>
            <exon e_start="14842" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12849" e_stop="12916" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13805" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13905" e_stop="13991" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.636" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14081" e_stop="14161" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14663" e_stop="14764" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14842" e_stop="14922" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15110" e_stop="15184" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15270" e_stop="15332" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15425" e_stop="15502" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15610" e_stop="15804" e_length="195"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15992" e_length="51"/>
          </exon>
          <intron i_serial="12" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16167" e_length="89"/>
          </exon>
          <intron i_serial="13" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="15" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12849" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12854" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12867" stop="12916"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15764" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15768" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15785" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15795" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419632" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15961" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15967" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15969" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15989" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16087" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16101" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> A  G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </first_frame>
            <second_frame>  Q  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </second_frame>
            <third_frame>   R  L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12850" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="12099" e_stop="12250"/>
            <exon e_start="12853" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13805"/>
            <exon e_start="13905" e_stop="13991"/>
            <exon e_start="14081" e_stop="14161"/>
            <exon e_start="14663" e_stop="14764"/>
            <exon e_start="14842" e_stop="14925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12099" e_stop="12250" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12853" e_stop="12916" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13805" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13905" e_stop="13991" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.636" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14081" e_stop="14161" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14663" e_stop="14764" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14842" e_stop="14925" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12099" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12125" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12126" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
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              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13623" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13623" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13639" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13642" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13655" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13666" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13765" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13803" stop="13805"/>
              <exon start="13905" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13960" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCCAATTTGTTCATTGAAAAAAAAAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAGGTT</gDNA_template>
            <first_frame> S  H  P  I  C  S  L  K  K  K  N  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R   </first_frame>
            <second_frame>  L  I  Q  F  V  H  *  K  K  K  T  I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E  G  </second_frame>
            <third_frame>   S  S  N  L  F  I  E  K  K  K  L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="13903" e_stop="13991"/>
            <exon e_start="14081" e_stop="14161"/>
            <exon e_start="14663" e_stop="14764"/>
            <exon e_start="14842" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.636" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13903" e_stop="13991" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.636" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13992" i_stop="14080" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14081" e_stop="14161" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14162" i_stop="14662" i_length="501"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14663" e_stop="14764" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.924">
            <gDNA_intron_boundary i_start="14765" i_stop="14841" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14842" e_stop="14922" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15110" e_stop="15184" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15270" e_stop="15332" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15425" e_stop="15502" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15610" e_stop="15804" e_length="195"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15992" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16167" e_length="89"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13903" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13906" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13910" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13922" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13922" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13927" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13932" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13935" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13942" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13942" stop="13991"/>
              <exon start="14081" stop="14161"/>
              <exon start="14663" stop="14764"/>
              <exon start="14842" stop="14922"/>
              <exon start="15110" stop="15120"/>
            </gDNA_exon_coordinates>
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              <exon start="15795" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419632" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15961" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15967" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15969" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15989" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16087" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16101" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGACCCAACTGATCAGACTGGTCTTGATAACTTCATGGTTCATCAGTTAGATGGAACTCAAAATGAGTGGGGTTGGTGCAAAGAAAAG : CTTGGTGCAAATGCCATCCTTGCTGTGTCACTTGCTGTGTGTAAAGCTGGCGCTGCTGTCAGGAATGTGCCATTGTACAAG : CACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> R  T  Q  L  I  R  L  V  L  I  T  S  W  F  I  S  *  M  E  L  K  M  S  G  V  G  A  K  K  S :   L  V  Q  M  P  S  L  L  C  H  L  L  C  V  K  L  A  L  L  S  G  M  C  H  C  T  S :   T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </first_frame>
            <second_frame>  G  P  N  *  S  D  W  S  *  *  L  H  G  S  S  V  R  W  N  S  K  *  V  G  L  V  Q  R  K   : A  W  C  K  C  H  P  C  C  V  T  C  C  V  *  S  W  R  C  C  Q  E  C  A  I  V  Q   : A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </second_frame>
            <third_frame>   D  P  T  D  Q  T  G  L  D  N  F  M  V  H  Q  L  D  G  T  Q  N  E  W  G  W  C  K  E  K  :  L  G  A  N  A  I  L  A  V  S  L  A  V  C  K  A  G  A  A  V  R  N  V  P  L  Y  K  :  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13905" stop="13991"/>
                    <exon start="14081" stop="14161"/>
                    <exon start="14663" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVSLAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="14656" e_stop="14764"/>
            <exon e_start="14842" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16101" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGCACATTGCTGATTTGGCTGGTAACAAGAAGTTGGTATTACCAGTTCCTGCCTTCAATGTGATTAATGGTGGATCTCATGCCGGAAACAAACTCGCAATGCAG : GAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> F  A  A  H  C  *  F  G  W  *  Q  E  V  G  I  T  S  S  C  L  Q  C  D  *  W  W  I  S  C  R  K  Q  T  R  N  A   : G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </first_frame>
            <second_frame>  L  Q  H  I  A  D  L  A  G  N  K  K  L  V  L  P  V  P  A  F  N  V  I  N  G  G  S  H  A  G  N  K  L  A  M  Q  :  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </second_frame>
            <third_frame>   C  S  T  L  L  I  W  L  V  T  R  S  W  Y  Y  Q  F  L  P  S  M  *  L  M  V  D  L  M  P  E  T  N  S  Q  C  R :   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14657" stop="14764"/>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="14841" e_stop="14922"/>
            <exon e_start="15110" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14841" e_stop="14922" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14923" i_stop="15109" i_length="187"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15110" e_stop="15184" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15270" e_stop="15332" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15425" e_stop="15502" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15610" e_stop="15804" e_length="195"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15992" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16167" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14841" stop="14922"/>
              <exon start="15110" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15671" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604113" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15676" stop="15804"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15680" stop="15804"/>
              <exon start="15942" stop="15992"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597336" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15683" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567213" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15690" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
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              <exon start="16555" stop="16873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213917" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15697" stop="15804"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257220" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15700" stop="15804"/>
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              <exon start="16555" stop="16859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15712" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15733" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16555" stop="16805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15734" stop="15804"/>
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              <exon start="16272" stop="16323"/>
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              <exon start="16555" stop="16855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15736" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15760" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15764" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15768" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15785" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15795" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419632" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
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              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
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              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="15992"/>
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              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15961" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15967" stop="15992"/>
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              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15969" stop="15992"/>
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              <exon start="16272" stop="16323"/>
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              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15989" stop="15992"/>
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              <exon start="16555" stop="16873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16087" stop="16167"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="16167"/>
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              <exon start="16405" stop="16461"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16101" stop="16167"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATTTATGATCCTTCCTGTTGGAGCTGCTAATTTCAAGGAGGCCATGAAGATGGGCTGTGAAGTCTATCACCATTTGAAG : GCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> G  I  Y  D  P  S  C  W  S  C  *  F  Q  G  G  H  E  D  G  L  *  S  L  S  P  F  E   : G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </first_frame>
            <second_frame>  E  F  M  I  L  P  V  G  A  A  N  F  K  E  A  M  K  M  G  C  E  V  Y  H  H  L  K  :  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </second_frame>
            <third_frame>   N  L  *  S  F  L  L  E  L  L  I  S  R  R  P  *  R  W  A  V  K  S  I  T  I  *  R :   L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14842" stop="14922"/>
                    <exon start="15110" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFMILPVGAANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="15103" e_stop="15184"/>
            <exon e_start="15270" e_stop="15332"/>
            <exon e_start="15425" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15103" e_stop="15184" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="15185" i_stop="15269" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15270" e_stop="15332" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15333" i_stop="15424" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15425" e_stop="15502" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15610" e_stop="15804" e_length="195"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15992" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16167" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15103" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15121" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15122" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15123" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15128" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15132" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15137" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394797" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15143" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15149" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15151" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15155" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15155" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15162" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15166" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15173" stop="15184"/>
              <exon start="15270" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15275" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15275" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15275" stop="15332"/>
              <exon start="15425" stop="15502"/>
              <exon start="15610" stop="15804"/>
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            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="10" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGCAGGCTGTGATTAAGAAGAAATATGGTCAGGATGCCACAAATGTCGGTGATGAGGGTGGTTTTGCTCCTAATATCCAG : GAGAACAAGGAAGGTCTTGAATTGCTCAAGACAGCCATTGAGAAAGCAGGTTACACTGGAAAG : GTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> I  A  G  C  D  *  E  E  I  W  S  G  C  H  K  C  R  *  *  G  W  F  C  S  *  Y  P   : G  E  Q  G  R  S  *  I  A  Q  D  S  H  *  E  S  R  L  H  W  K   : G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </first_frame>
            <second_frame>  L  Q  A  V  I  K  K  K  Y  G  Q  D  A  T  N  V  G  D  E  G  G  F  A  P  N  I  Q  :  E  N  K  E  G  L  E  L  L  K  T  A  I  E  K  A  G  Y  T  G  K  :  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </second_frame>
            <third_frame>   C  R  L  *  L  R  R  N  M  V  R  M  P  Q  M  S  V  M  R  V  V  L  L  L  I  S  R :   R  T  R  K  V  L  N  C  S  R  Q  P  L  R  K  Q  V  T  L  E  R :   W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15104" stop="15184"/>
                    <exon start="15270" stop="15332"/>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="15412" e_stop="15502"/>
            <exon e_start="15610" e_stop="15804"/>
            <exon e_start="15942" e_stop="15992"/>
            <exon e_start="16079" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15412" e_stop="15502" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.936">
            <gDNA_intron_boundary i_start="15503" i_stop="15609" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15610" e_stop="15804" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15805" i_stop="15941" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15942" e_stop="15992" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15993" i_stop="16078" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16167" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15412" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15435" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15439" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15453" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15476" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15487" stop="15502"/>
              <exon start="15610" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15626" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15645" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15652" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15653" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15655" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15655" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15655" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
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              <exon start="16555" stop="16646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15655" stop="15804"/>
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              <exon start="16272" stop="16303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15659" stop="15804"/>
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              <exon start="16555" stop="16667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15671" stop="15804"/>
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              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604113" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15676" stop="15804"/>
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              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15680" stop="15804"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597336" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15683" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567213" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15690" stop="15804"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213917" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15697" stop="15804"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257220" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15700" stop="15804"/>
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              <exon start="16555" stop="16859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15712" stop="15804"/>
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              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15733" stop="15804"/>
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              <exon start="16555" stop="16805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15734" stop="15804"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15736" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16555" stop="16902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15760" stop="15804"/>
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              <exon start="16555" stop="16910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15764" stop="15804"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15768" stop="15804"/>
              <exon start="15942" stop="15992"/>
              <exon start="16079" stop="16167"/>
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              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15785" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16555" stop="16901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
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              <exon start="16555" stop="16890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15793" stop="15804"/>
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              <exon start="16555" stop="16659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15795" stop="15804"/>
              <exon start="15942" stop="15992"/>
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              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419632" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
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              <exon start="16555" stop="16906"/>
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            <referenceDNA id="SGN-E369610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15945" stop="15992"/>
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              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="15992"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15961" stop="15992"/>
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              <exon start="16555" stop="16882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15967" stop="15992"/>
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            <referenceDNA id="SGN-E250505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15969" stop="15992"/>
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            <referenceDNA id="SGN-E555897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15989" stop="15992"/>
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            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16087" stop="16167"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="16167"/>
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            <referenceDNA id="SGN-E416190" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16101" stop="16167"/>
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              <exon start="16555" stop="16907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
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              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
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            <referenceDNA id="SGN-E267512" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
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            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="11" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCTTTTTAGGTGGTCATTGGAATGGATGTTGCAGCATCTGAATTTTACGGAAAGGACAAATCTTATGACCTGAACTTCAAAGAAGAG : AGCAATGACGGCTCACAAAAGATATCAGGTGACCAACTCAAGGACTTATACAAGTCATTTGTGTCCGAGTACCCTATTGTTTCAATTGAAGATCCATTTGACCAAGATGACTGGGAGACCTATGCTAAGCTCACTGCTGAGATTGGGGAGCAAGTACAGATTGTCGGTGATGACCTTCTTGTCACCAACCCTAAG : AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> I  F  F  L  G  G  H  W  N  G  C  C  S  I  *  I  L  R  K  G  Q  I  L  *  P  E  L  Q  R  R   : E  Q  *  R  L  T  K  D  I  R  *  P  T  Q  G  L  I  Q  V  I  C  V  R  V  P  Y  C  F  N  *  R  S  I  *  P  R  *  L  G  D  L  C  *  A  H  C  *  D  W  G  A  S  T  D  C  R  *  *  P  S  C  H  Q  P  *   : E  G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </first_frame>
            <second_frame>  F  S  F  *  V  V  I  G  M  D  V  A  A  S  E  F  Y  G  K  D  K  S  Y  D  L  N  F  K  E  E  :  S  N  D  G  S  Q  K  I  S  G  D  Q  L  K  D  L  Y  K  S  F  V  S  E  Y  P  I  V  S  I  E  D  P  F  D  Q  D  D  W  E  T  Y  A  K  L  T  A  E  I  G  E  Q  V  Q  I  V  G  D  D  L  L  V  T  N  P  K  :  R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </second_frame>
            <third_frame>   F  L  F  R  W  S  L  E  W  M  L  Q  H  L  N  F  T  E  R  T  N  L  M  T  *  T  S  K  K  R :   A  M  T  A  H  K  R  Y  Q  V  T  N  S  R  T  Y  T  S  H  L  C  P  S  T  L  L  F  Q  L  K  I  H  L  T  K  M  T  G  R  P  M  L  S  S  L  L  R  L  G  S  K  Y  R  L  S  V  M  T  F  L  S  P  T  L  R :   G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15425" stop="15502"/>
                    <exon start="15610" stop="15804"/>
                    <exon start="15942" stop="15992"/>
                    <exon start="16079" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIEDPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="12127" e_stop="12250"/>
            <exon e_start="12853" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13767"/>
            <exon e_start="16124" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12127" e_stop="12250" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12853" e_stop="12916" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13767" e_length="10"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16124" e_stop="16167" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13767"/>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13767"/>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13767"/>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12127" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13767"/>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12138" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12153" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12178" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12179" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13767"/>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424532" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12181" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="12" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACA : ATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> K  T  I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q :   C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </first_frame>
            <second_frame>  K  L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N   : N  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </second_frame>
            <third_frame>   N  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  :  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13767"/>
                    <exon start="16124" stop="16167"/>
                    <exon start="16272" stop="16301"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVQEGRLGCNDQSPQWRNRRYLHC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="12" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13632" stop="13672"/>
                    <exon start="13758" stop="13767"/>
                    <exon start="16124" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMEDLTTSERVFRRLLTMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="13">
          <exon_coordinates>
            <exon e_start="12131" e_stop="12250"/>
            <exon e_start="12853" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13805"/>
            <exon e_start="13905" e_stop="13914"/>
            <exon e_start="16154" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12131" e_stop="12250" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12251" i_stop="12852" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12853" e_stop="12916" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13805" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13806" i_stop="13904" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13905" e_stop="13914" e_length="10"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13915" i_stop="16153" i_length="2239"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16154" e_stop="16167" e_length="14"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16555" e_stop="16906" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12131" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12138" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12139" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12142" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12153" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12160" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13805"/>
              <exon start="13905" stop="13914"/>
              <exon start="16154" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12178" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12181" stop="12250"/>
              <exon start="12853" stop="12916"/>
              <exon start="13608" stop="13648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="13" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATAAACTTTTTTCTCTTCACTCTTTTCTACTATTTCTCTGTTCATAGATCTAATGGCAACTATCAAATCCATTAAAGCTCGTCAGATCTTTGACAGCCGTGGTAACCCCACAGTCGAG : GTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACAATGTCAACTCAATTATTGGCCCTGCTCTTGTTGGCAAG : GACCCAACTG : ACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</gDNA_template>
            <first_frame> L  *  T  F  F  S  S  L  F  S  T  I  S  L  F  I  D  L  M  A  T  I  K  S  I  K  A  R  Q  I  F  D  S  R  G  N  P  T  V  E  :  V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N  N  V  N  S  I  I  G  P  A  L  V  G  K  :  D  P  T   : D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F   </first_frame>
            <second_frame>  Y  K  L  F  S  L  H  S  F  L  L  F  L  C  S  *  I  *  W  Q  L  S  N  P  L  K  L  V  R  S  L  T  A  V  V  T  P  Q  S  R :   L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  M  S  T  Q  L  L  A  L  L  L  L  A  R :   T  Q  L  :  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  </second_frame>
            <third_frame>   I  N  F  F  L  F  T  L  F  Y  Y  F  S  V  H  R  S  N  G  N  Y  Q  I  H  *  S  S  S  D  L  *  Q  P  W  *  P  H  S  R   : G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q  C  Q  L  N  Y  W  P  C  S  C  W  Q   : G  P  N  * :   P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="13" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12137" stop="12250"/>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13914"/>
                    <exon start="16154" stop="16167"/>
                    <exon start="16272" stop="16301"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSSLFSTISLFIDLMATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVNSIIGPALVGKDPTDQSPQWRNRRYLHC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="13" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13632" stop="13672"/>
                    <exon start="13758" stop="13805"/>
                    <exon start="13905" stop="13914"/>
                    <exon start="16154" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMEDLTTSERVFRRLLTMSTQLLALLLLARTQLTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="14">
          <exon_coordinates>
            <exon e_start="12851" e_stop="12916"/>
            <exon e_start="13608" e_stop="13672"/>
            <exon e_start="13758" e_stop="13767"/>
            <exon e_start="16124" e_stop="16167"/>
            <exon e_start="16272" e_stop="16323"/>
            <exon e_start="16405" e_stop="16461"/>
            <exon e_start="16555" e_stop="16914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.955"/>
          <exon-intron don_prob="0.891" acc_prob="1.000" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="12851" e_stop="12916" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12917" i_stop="13607" i_length="691"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="13608" e_stop="13672" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13673" i_stop="13757" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13758" e_stop="13767" e_length="10"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13768" i_stop="16123" i_length="2356"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16124" e_stop="16167" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16168" i_stop="16271" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16272" e_stop="16323" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16324" i_stop="16404" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16405" e_stop="16461" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="16462" i_stop="16554" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="16555" e_stop="16914" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12851" stop="12916"/>
              <exon start="13608" stop="13672"/>
              <exon start="13758" stop="13767"/>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16124" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16139" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16140" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16150" stop="16167"/>
              <exon start="16272" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16276" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16292" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16296" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16300" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16308" stop="16323"/>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16461"/>
              <exon start="16555" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16416" stop="16461"/>
              <exon start="16555" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16432" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16444" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="16461"/>
              <exon start="16555" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16571" stop="16878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16590" stop="16906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16604" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16724" stop="16879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="14" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTGATGTACATATCTCAAATGGTGTGTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACCG : GAATTTACGAAGCCCTTGAATTGAGGGATGGAGGATCTGACTACCTCGGAAAGGGTGTTTCGAAG : GCTGTTAACA : ATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</gDNA_template>
            <first_frame> R  L  M  Y  I  S  Q  M  V  C  L  P  E  L  L  F  Q  V  V  H  P  P  :  E  F  T  K  P  L  N  *  G  M  E  D  L  T  T  S  E  R  V  F  R  R :   L  L  T  :  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N </first_frame>
            <second_frame>  G  *  C  T  Y  L  K  W  C  V  C  Q  S  C  C  S  K  W  C  I  H  R :   N  L  R  S  P  *  I  E  G  W  R  I  *  L  P  R  K  G  C  F  E   : G  C  *  Q :   C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S   </second_frame>
            <third_frame>   V  D  V  H  I  S  N  G  V  F  A  R  A  A  V  P  S  G  A  S  T   : G  I  Y  E  A  L  E  L  R  D  G  G  S  D  Y  L  G  K  G  V  S  K  :  A  V  N   : N  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="14" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13632" stop="13672"/>
                    <exon start="13758" stop="13767"/>
                    <exon start="16124" stop="16167"/>
                    <exon start="16272" stop="16323"/>
                    <exon start="16405" stop="16461"/>
                    <exon start="16555" stop="16635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMEDLTTSERVFRRLLTMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="14" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12853" stop="12916"/>
                    <exon start="13608" stop="13672"/>
                    <exon start="13758" stop="13767"/>
                    <exon start="16124" stop="16167"/>
                    <exon start="16272" stop="16301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVHISNGVFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVNNVQEGRLGCNDQSPQWRNRRYLHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24436" PGL_stop="19370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24436" e_stop="24343"/>
            <exon e_start="23180" e_stop="23110"/>
            <exon e_start="23025" e_stop="22811"/>
            <exon e_start="22702" e_stop="22674"/>
            <exon e_start="22591" e_stop="22553"/>
            <exon e_start="22446" e_stop="22307"/>
            <exon e_start="20876" e_stop="20832"/>
            <exon e_start="20739" e_stop="20649"/>
            <exon e_start="20355" e_stop="20253"/>
            <exon e_start="20165" e_stop="19792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24436" e_stop="24343" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23180" e_stop="23110" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23025" e_stop="22811" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22702" e_stop="22674" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22591" e_stop="22553" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22446" e_stop="22307" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20876" e_stop="20832" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20739" e_stop="20649" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20355" e_stop="20253" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.984">
            <gDNA_exon_boundary e_start="20165" e_stop="19792" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24436" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24411" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24407" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24406" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24406" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24406" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24404" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24402" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24402" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24402" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24400" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24400" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24398" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24398" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24398" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24397" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="20142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24396" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="20142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24396" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24395" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24393" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="20135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24393" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24388" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24377" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="20056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24374" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24367" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24367" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22979" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22414" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22337" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20870" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20273" stop="20253"/>
              <exon start="20165" stop="19800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275788" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAGTACACCCTAGCAGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA : GGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG : GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG : GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG : ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG : GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATG</gDNA_template>
            <first_frame> H  S  T  P  *  Q  S  L  S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E :   E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  :  D  E  D  D  S  D  E  S  E  E  E  T  P  K  K  :  A  E  P  A  K  K  R  K  A  D  S  A  T  K  T  P  V  T  D  K  K  A  K  L  T  T  P  Q  K  T   : D  G  K  K  G  G  V  H  V  A  T  P  H  P  S  K  Q  A  S  K  T  P  K  S  A  G  S  H  H  C  K  P  C  N  R :   S  F  G  S  E  G  A  L  E  S  H  S  K  A  K  H  S  A  G  K  *  I  D  M  E  T  F  S  L  C  L  V  V  T  Y  D  Q  K  R  A  F  L  V  V  F  F  P  V  S  I  W  F  I  *  C  K  G  K  M  S  Y  I  Y  Y  D  L  S  L  G  Q  S  S  V  L  M  F  K  T  C  Y  V  F  N  E  S  F  G  L  N  Q  R  M  L  L  P  V  G  I  L  L  F  G  K  K  K  T  N  V  N  I  T  I  S  I  Y  H  *  V  F  T  T  L  N  H  </first_frame>
            <second_frame>  I  V  H  P  S  S  L  F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M   : R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R :   M  K  T  T  L  M  R  V  R  R  R  H  Q  R  R :   L  S  L  Q  K  R  G  R  Q  I  Q  L  Q  K  H  L  S  L  I  K  R  Q  N  *  Q  H  L  K  K  L  :  M  A  K  K  V  V  S  M  *  Q  H  R  T  L  L  S  R  L  V  R  L  Q  N  Q  L  D  L  I  T  A  S  R  A  T   : G  V  L  V  L  K  V  L  S  N  L  T  R  K  L  N  T  V  L  E  S  K  *  T  W  R  H  L  V  F  V  W  L  L  P  M  I  R  R  E  L  F  *  S  F  F  S  P  F  R  F  G  S  S  D  V  K  E  R  *  V  T  S  I  M  I  Y  L  *  V  N  H  L  F  *  C  L  R  L  V  M  F  S  M  R  V  L  D  *  I  R  E  C  Y  C  L  L  V  S  C  Y  L  G  K  K  K  L  M  L  T  L  Q  S  Q  S  I  I  K  Y  L  L  L  *  I  M </second_frame>
            <third_frame>   *  Y  T  L  A  V  S  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  :  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R   : G  *  R  R  L  *  *  E  *  G  G  D  T  K  E   : G  *  A  C  K  K  E  E  G  R  F  S  Y  K  N  T  C  H  *  *  K  G  K  I  D  N  T  S  K  N  * :   W  Q  K  R  W  C  P  C  S  N  T  A  P  F  *  A  G  *  *  D  S  K  I  S  W  I  S  S  L  Q  A  V  Q  Q  :  E  F  W  F  *  R  C  S  R  I  S  L  E  S  *  T  Q  C  W  K  V  N  R  H  G  D  I  *  S  L  F  G  C  Y  L  *  S  E  E  S  F  F  S  R  F  F  P  R  F  D  L  V  H  L  M  *  R  K  D  E  L  H  L  L  *  S  I  S  R  S  I  I  C  F  D  V  *  D  L  L  C  F  Q  *  E  F  W  I  E  S  E  N  V  I  A  C  W  Y  L  V  I  W  E  K  K  N  *  C  *  H  Y  N  L  N  L  S  L  S  I  Y  Y  F  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24382" stop="24343"/>
                    <exon start="23180" stop="23110"/>
                    <exon start="23025" stop="22811"/>
                    <exon start="22702" stop="22674"/>
                    <exon start="22591" stop="22553"/>
                    <exon start="22446" stop="22307"/>
                    <exon start="20876" stop="20832"/>
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                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
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                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEDEDDSDESEEETPKKAEPAKKRKADSATKTPVTDKKAKLTTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALESHSKAKHSAGK*</predicted_protein_sequence>
            </orf_entry>
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            <gDNA_exon_coordinates>
              <exon start="24395" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24393" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="20135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24393" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24388" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24377" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="20056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24374" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24367" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24367" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22979" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22337" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20870" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20682" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19831"/>
              <exon start="19388" stop="19370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20682" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19831"/>
              <exon start="19388" stop="19370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353687" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAGTACACCCTAGCAGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA : GGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG : GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG : GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG : ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG : GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAA : AAAAAAAGAAACAATACAA</gDNA_template>
            <first_frame> H  S  T  P  *  Q  S  L  S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E :   E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  :  D  E  D  D  S  D  E  S  E  E  E  T  P  K  K  :  A  E  P  A  K  K  R  K  A  D  S  A  T  K  T  P  V  T  D  K  K  A  K  L  T  T  P  Q  K  T   : D  G  K  K  G  G  V  H  V  A  T  P  H  P  S  K  Q  A  S  K  T  P  K  S  A  G  S  H  H  C  K  P  C  N  R :   S  F  G  S  E  G  A  L  E  S  H  S  K  A  K  H  S  A  G  K  *  I  D  M  E  T  F  S  L  C  L  V  V  T  Y  D  Q  K  R  A  F  L  V  V  F  F  P  V  S  I  W  F  I  *  C  K  G  K  M  S  Y  I  Y  Y  D  L  S  L  G  Q  S  S  V  L  M  F  K  T  C  Y  V  F  N  E  S  F  G  L  N  Q  R  M  L  L  P  V  G  I  L  L  F  G  K  K  K  T  N  V  N  I  T   : K  K  K  K  Q  Y   </first_frame>
            <second_frame>  I  V  H  P  S  S  L  F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M   : R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R :   M  K  T  T  L  M  R  V  R  R  R  H  Q  R  R :   L  S  L  Q  K  R  G  R  Q  I  Q  L  Q  K  H  L  S  L  I  K  R  Q  N  *  Q  H  L  K  K  L  :  M  A  K  K  V  V  S  M  *  Q  H  R  T  L  L  S  R  L  V  R  L  Q  N  Q  L  D  L  I  T  A  S  R  A  T   : G  V  L  V  L  K  V  L  S  N  L  T  R  K  L  N  T  V  L  E  S  K  *  T  W  R  H  L  V  F  V  W  L  L  P  M  I  R  R  E  L  F  *  S  F  F  S  P  F  R  F  G  S  S  D  V  K  E  R  *  V  T  S  I  M  I  Y  L  *  V  N  H  L  F  *  C  L  R  L  V  M  F  S  M  R  V  L  D  *  I  R  E  C  Y  C  L  L  V  S  C  Y  L  G  K  K  K  L  M  L  T  L  Q  :  K  K  R  N  N  T  </second_frame>
            <third_frame>   *  Y  T  L  A  V  S  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  :  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R   : G  *  R  R  L  *  *  E  *  G  G  D  T  K  E   : G  *  A  C  K  K  E  E  G  R  F  S  Y  K  N  T  C  H  *  *  K  G  K  I  D  N  T  S  K  N  * :   W  Q  K  R  W  C  P  C  S  N  T  A  P  F  *  A  G  *  *  D  S  K  I  S  W  I  S  S  L  Q  A  V  Q  Q  :  E  F  W  F  *  R  C  S  R  I  S  L  E  S  *  T  Q  C  W  K  V  N  R  H  G  D  I  *  S  L  F  G  C  Y  L  *  S  E  E  S  F  F  S  R  F  F  P  R  F  D  L  V  H  L  M  *  R  K  D  E  L  H  L  L  *  S  I  S  R  S  I  I  C  F  D  V  *  D  L  L  C  F  Q  *  E  F  W  I  E  S  E  N  V  I  A  C  W  Y  L  V  I  W  E  K  K  N  *  C  *  H  Y  K :   K  K  E  T  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24382" stop="24343"/>
                    <exon start="23180" stop="23110"/>
                    <exon start="23025" stop="22811"/>
                    <exon start="22702" stop="22674"/>
                    <exon start="22591" stop="22553"/>
                    <exon start="22446" stop="22307"/>
                    <exon start="20876" stop="20832"/>
                    <exon start="20739" stop="20649"/>
                    <exon start="20355" stop="20253"/>
                    <exon start="20165" stop="20102"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEDEDDSDESEEETPKKAEPAKKRKADSATKTPVTDKKAKLTTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALESHSKAKHSAGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24414" e_stop="24343"/>
            <exon e_start="23180" e_stop="23110"/>
            <exon e_start="23025" e_stop="22811"/>
            <exon e_start="22702" e_stop="22674"/>
            <exon e_start="22591" e_stop="22553"/>
            <exon e_start="22446" e_stop="22153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24414" e_stop="24343" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23180" e_stop="23110" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23025" e_stop="22811" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22810" i_stop="22703" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22702" e_stop="22674" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22591" e_stop="22553" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="22446" e_stop="22153" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24411" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24407" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24406" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24406" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24406" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24402" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24400" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24400" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24399" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24398" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24398" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24395" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24388" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24374" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24367" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22919" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22919" stop="22811"/>
              <exon start="22702" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA : GGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATT</gDNA_template>
            <first_frame> F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M   : R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R  Y  N  F  F  Y  I  F  M  V  F  K  L  L  S  W  S  F  V  V  L  V  R  E  T  N  T  R  T  K  N  G  C  H  L  F  K  L  V  *  L  F  N  *  N  V  K  M  P  Y  *  I </first_frame>
            <second_frame>  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  :  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R  G  T  I  F  F  I  S  S  W  C  L  N  Y  C  H  G  L  L  *  Y  *  L  G  K  P  I  Q  G  Q  K  M  G  A  T  C  L  S  L  F  D  Y  L  T  E  M  L  K  C  P  T  K   </second_frame>
            <third_frame>   S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E :   E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  V  Q  F  F  L  Y  L  H  G  V  *  I  I  V  M  V  F  C  S  I  S  *  G  N  Q  Y  K  D  K  K  W  V  P  L  V  *  A  C  L  I  I  *  L  K  C  *  N  A  L  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24382" stop="24343"/>
                    <exon start="23180" stop="23110"/>
                    <exon start="23025" stop="22811"/>
                    <exon start="22702" stop="22674"/>
                    <exon start="22591" stop="22553"/>
                    <exon start="22446" stop="22274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEVQFFLYLHGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="24414" e_stop="24343"/>
            <exon e_start="23180" e_stop="23110"/>
            <exon e_start="23025" e_stop="22674"/>
            <exon e_start="22591" e_stop="22553"/>
            <exon e_start="22446" e_stop="22307"/>
            <exon e_start="20876" e_stop="20832"/>
            <exon e_start="20739" e_stop="20649"/>
            <exon e_start="20355" e_stop="20253"/>
            <exon e_start="20165" e_stop="19792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24414" e_stop="24343" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23180" e_stop="23110" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="23025" e_stop="22674" e_length="352"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22591" e_stop="22553" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22446" e_stop="22307" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20876" e_stop="20832" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20739" e_stop="20649" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20355" e_stop="20253" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="20165" e_stop="19792" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22414" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22337" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20870" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20273" stop="20253"/>
              <exon start="20165" stop="19800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275788" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG : GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG : GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG : ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG : GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATG</gDNA_template>
            <first_frame> F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M  N  I  L  F  Y  L  S  V  N  F  Y  F  L  *  A  F  I  F  R  S  M  *  N  F  V  Y  L  F  H  *  P  N  F  C  G  S  R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R :   M  K  T  T  L  M  R  V  R  R  R  H  Q  R  R :   L  S  L  Q  K  R  G  R  Q  I  Q  L  Q  K  H  L  S  L  I  K  R  Q  N  *  Q  H  L  K  K  L  :  M  A  K  K  V  V  S  M  *  Q  H  R  T  L  L  S  R  L  V  R  L  Q  N  Q  L  D  L  I  T  A  S  R  A  T   : G  V  L  V  L  K  V  L  S  N  L  T  R  K  L  N  T  V  L  E  S  K  *  T  W  R  H  L  V  F  V  W  L  L  P  M  I  R  R  E  L  F  *  S  F  F  S  P  F  R  F  G  S  S  D  V  K  E  R  *  V  T  S  I  M  I  Y  L  *  V  N  H  L  F  *  C  L  R  L  V  M  F  S  M  R  V  L  D  *  I  R  E  C  Y  C  L  L  V  S  C  Y  L  G  K  K  K  L  M  L  T  L  Q  S  Q  S  I  I  K  Y  L  L  L  *  I  M </first_frame>
            <second_frame>  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  I  S  F  F  I  C  L  L  T  F  I  S  Y  R  H  L  F  F  V  R  C  K  I  L  C  I  C  F  I  D  Q  T  S  V  V  H  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R   : G  *  R  R  L  *  *  E  *  G  G  D  T  K  E   : G  *  A  C  K  K  E  E  G  R  F  S  Y  K  N  T  C  H  *  *  K  G  K  I  D  N  T  S  K  N  * :   W  Q  K  R  W  C  P  C  S  N  T  A  P  F  *  A  G  *  *  D  S  K  I  S  W  I  S  S  L  Q  A  V  Q  Q  :  E  F  W  F  *  R  C  S  R  I  S  L  E  S  *  T  Q  C  W  K  V  N  R  H  G  D  I  *  S  L  F  G  C  Y  L  *  S  E  E  S  F  F  S  R  F  F  P  R  F  D  L  V  H  L  M  *  R  K  D  E  L  H  L  L  *  S  I  S  R  S  I  I  C  F  D  V  *  D  L  L  C  F  Q  *  E  F  W  I  E  S  E  N  V  I  A  C  W  Y  L  V  I  W  E  K  K  N  *  C  *  H  Y  N  L  N  L  S  L  S  I  Y  Y  F  E  S   </second_frame>
            <third_frame>   S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E  Y  P  F  L  F  V  C  *  L  L  F  L  I  G  I  Y  F  S  F  D  V  K  F  C  V  F  V  S  L  T  K  L  L  W  F  T  E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  :  D  E  D  D  S  D  E  S  E  E  E  T  P  K  K  :  A  E  P  A  K  K  R  K  A  D  S  A  T  K  T  P  V  T  D  K  K  A  K  L  T  T  P  Q  K  T   : D  G  K  K  G  G  V  H  V  A  T  P  H  P  S  K  Q  A  S  K  T  P  K  S  A  G  S  H  H  C  K  P  C  N  R :   S  F  G  S  E  G  A  L  E  S  H  S  K  A  K  H  S  A  G  K  *  I  D  M  E  T  F  S  L  C  L  V  V  T  Y  D  Q  K  R  A  F  L  V  V  F  F  P  V  S  I  W  F  I  *  C  K  G  K  M  S  Y  I  Y  Y  D  L  S  L  G  Q  S  S  V  L  M  F  K  T  C  Y  V  F  N  E  S  F  G  L  N  Q  R  M  L  L  P  V  G  I  L  L  F  G  K  K  K  T  N  V  N  I  T  I  S  I  Y  H  *  V  F  T  T  L  N  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22785" stop="22674"/>
                    <exon start="22591" stop="22553"/>
                    <exon start="22446" stop="22307"/>
                    <exon start="20876" stop="20832"/>
                    <exon start="20739" stop="20649"/>
                    <exon start="20355" stop="20253"/>
                    <exon start="20165" stop="20102"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFLIGIYFSFDVKFCVFVSLTKLLWFTEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEDEDDSDESEEETPKKAEPAKKRKADSATKTPVTDKKAKLTTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALESHSKAKHSAGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24382" stop="24343"/>
                    <exon start="23180" stop="23110"/>
                    <exon start="23025" stop="22786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEYPFLFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="24414" e_stop="24343"/>
            <exon e_start="23180" e_stop="23110"/>
            <exon e_start="23025" e_stop="22674"/>
            <exon e_start="22591" e_stop="22553"/>
            <exon e_start="22446" e_stop="22307"/>
            <exon e_start="20876" e_stop="20832"/>
            <exon e_start="20739" e_stop="20649"/>
            <exon e_start="20355" e_stop="20253"/>
            <exon e_start="20165" e_stop="19890"/>
            <exon e_start="19388" e_stop="19372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.844"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24414" e_stop="24343" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24342" i_stop="23181" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23180" e_stop="23110" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23109" i_stop="23026" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="23025" e_stop="22674" e_length="352"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22673" i_stop="22592" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22591" e_stop="22553" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22552" i_stop="22447" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22446" e_stop="22307" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22306" i_stop="20877" i_length="1430"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20876" e_stop="20832" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20831" i_stop="20740" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="20739" e_stop="20649" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20648" i_stop="20356" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20355" e_stop="20253" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20252" i_stop="20166" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="0.844">
            <gDNA_exon_boundary e_start="20165" e_stop="19890" e_length="276"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19889" i_stop="19389" i_length="501"/>
          </intron>
          <exon e_serial="10" e_score="0.824">
            <gDNA_exon_boundary e_start="19388" e_stop="19372" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24414" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="24343"/>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23180" stop="23110"/>
              <exon start="23025" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22703" stop="22674"/>
              <exon start="22591" stop="22553"/>
              <exon start="22446" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19890"/>
              <exon start="19388" stop="19372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579818" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22430" stop="22307"/>
              <exon start="20876" stop="20832"/>
              <exon start="20739" stop="20649"/>
              <exon start="20355" stop="20253"/>
              <exon start="20165" stop="19933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG : GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG : GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG : ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG : GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAAT : AAAAAAAGAAACAATAC</gDNA_template>
            <first_frame> F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M  N  I  L  F  Y  L  S  V  N  F  Y  F  L  *  A  F  I  F  R  S  M  *  N  F  V  Y  L  F  H  *  P  N  F  C  G  S  R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R :   M  K  T  T  L  M  R  V  R  R  R  H  Q  R  R :   L  S  L  Q  K  R  G  R  Q  I  Q  L  Q  K  H  L  S  L  I  K  R  Q  N  *  Q  H  L  K  K  L  :  M  A  K  K  V  V  S  M  *  Q  H  R  T  L  L  S  R  L  V  R  L  Q  N  Q  L  D  L  I  T  A  S  R  A  T   : G  V  L  V  L  K  V  L  S  N  L  T  R  K  L  N  T  V  L  E  S  K  *  T  W  R  H  L  V  F  V  W  L  L  P  M  I  R  R  E  L  F  *  S  F  F  S  P  F  R  F  G  S  S  D  V  K  E  R  *  V  T  S  I  M  I  Y  L  *  V  N  H  L  F  *  C  L  R  L  V  M  F  S  M  R  V  L  D  *  I  R  E   : *  K  K  K  Q  Y </first_frame>
            <second_frame>  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  I  S  F  F  I  C  L  L  T  F  I  S  Y  R  H  L  F  F  V  R  C  K  I  L  C  I  C  F  I  D  Q  T  S  V  V  H  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R   : G  *  R  R  L  *  *  E  *  G  G  D  T  K  E   : G  *  A  C  K  K  E  E  G  R  F  S  Y  K  N  T  C  H  *  *  K  G  K  I  D  N  T  S  K  N  * :   W  Q  K  R  W  C  P  C  S  N  T  A  P  F  *  A  G  *  *  D  S  K  I  S  W  I  S  S  L  Q  A  V  Q  Q  :  E  F  W  F  *  R  C  S  R  I  S  L  E  S  *  T  Q  C  W  K  V  N  R  H  G  D  I  *  S  L  F  G  C  Y  L  *  S  E  E  S  F  F  S  R  F  F  P  R  F  D  L  V  H  L  M  *  R  K  D  E  L  H  L  L  *  S  I  S  R  S  I  I  C  F  D  V  *  D  L  L  C  F  Q  *  E  F  W  I  E  S  E  N  :  K  K  R  N  N   </second_frame>
            <third_frame>   S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E  Y  P  F  L  F  V  C  *  L  L  F  L  I  G  I  Y  F  S  F  D  V  K  F  C  V  F  V  S  L  T  K  L  L  W  F  T  E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  :  D  E  D  D  S  D  E  S  E  E  E  T  P  K  K  :  A  E  P  A  K  K  R  K  A  D  S  A  T  K  T  P  V  T  D  K  K  A  K  L  T  T  P  Q  K  T   : D  G  K  K  G  G  V  H  V  A  T  P  H  P  S  K  Q  A  S  K  T  P  K  S  A  G  S  H  H  C  K  P  C  N  R :   S  F  G  S  E  G  A  L  E  S  H  S  K  A  K  H  S  A  G  K  *  I  D  M  E  T  F  S  L  C  L  V  V  T  Y  D  Q  K  R  A  F  L  V  V  F  F  P  V  S  I  W  F  I  *  C  K  G  K  M  S  Y  I  Y  Y  D  L  S  L  G  Q  S  S  V  L  M  F  K  T  C  Y  V  F  N  E  S  F  G  L  N  Q  R  I :   K  K  E  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22785" stop="22674"/>
                    <exon start="22591" stop="22553"/>
                    <exon start="22446" stop="22307"/>
                    <exon start="20876" stop="20832"/>
                    <exon start="20739" stop="20649"/>
                    <exon start="20355" stop="20253"/>
                    <exon start="20165" stop="20102"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFLIGIYFSFDVKFCVFVSLTKLLWFTEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEDEDDSDESEEETPKKAEPAKKRKADSATKTPVTDKKAKLTTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALESHSKAKHSAGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24382" stop="24343"/>
                    <exon start="23180" stop="23110"/>
                    <exon start="23025" stop="22786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEYPFLFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27733" PGL_stop="32768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27733" e_stop="27801"/>
            <exon e_start="27900" e_stop="28017"/>
            <exon e_start="28899" e_stop="28969"/>
            <exon e_start="29797" e_stop="29853"/>
            <exon e_start="30000" e_stop="30091"/>
            <exon e_start="30862" e_stop="30909"/>
            <exon e_start="31415" e_stop="31535"/>
            <exon e_start="31625" e_stop="31671"/>
            <exon e_start="32732" e_stop="32768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.507" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.303" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.989" e_score="0.992"/>
          <exon-intron don_prob="0.957" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27733" e_stop="27801" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.963">
            <gDNA_intron_boundary i_start="27802" i_stop="27899" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27900" e_stop="28017" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.507" acc_prob="0.958">
            <gDNA_intron_boundary i_start="28018" i_stop="28898" i_length="881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28899" e_stop="28969" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.303" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28970" i_stop="29796" i_length="827"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29797" e_stop="29853" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.805" acc_prob="0.988">
            <gDNA_intron_boundary i_start="29854" i_stop="29999" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30000" e_stop="30091" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30092" i_stop="30861" i_length="770"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30862" e_stop="30909" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.760">
            <gDNA_intron_boundary i_start="30910" i_stop="31414" i_length="505"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="31415" e_stop="31535" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.942" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31536" i_stop="31624" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31625" e_stop="31671" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31672" i_stop="32731" i_length="1060"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32732" e_stop="32768" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27733" stop="27801"/>
              <exon start="27900" stop="28017"/>
              <exon start="28899" stop="28969"/>
              <exon start="29797" stop="29853"/>
              <exon start="30000" stop="30091"/>
              <exon start="30862" stop="30909"/>
              <exon start="31415" stop="31446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27733" stop="27801"/>
              <exon start="27900" stop="28017"/>
              <exon start="28899" stop="28969"/>
              <exon start="29797" stop="29853"/>
              <exon start="30000" stop="30089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27761" stop="27801"/>
              <exon start="27900" stop="28017"/>
              <exon start="28899" stop="28969"/>
              <exon start="29797" stop="29853"/>
              <exon start="30000" stop="30091"/>
              <exon start="30862" stop="30909"/>
              <exon start="31415" stop="31535"/>
              <exon start="31625" stop="31671"/>
              <exon start="32732" stop="32768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAACCTTCAATATCTGCTAATGGATCTCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCG : GTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATG : GTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT : GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTT : GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTG : GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAA : ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG : CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC : ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTG</gDNA_template>
            <first_frame> L  N  L  Q  Y  L  L  M  D  L  N  N  L  F  I  S  L  T  P  S  W  T  S  :  V  S  M  L  I  G  F  F  L  Y  L  A  T  V  G  S  I  L  P  G  K  L  V  P  G  A  T  L  S  D  G  T  R  L  H  Y  R  C  N   : G  L  L  S  L  L  L  L  V  L  L  L  G  V  G  S  Q  M  N  L  V  S  P  T  :  A  I  A  D  R  G  L  E  L  L  S  T  T  L  I  F  S  V  L  :  V  T  L  M  L  Y  L  V  G  L  N  S  R  A  K  S  S  S  L  K  P  H  V  S  G  N  L  I  H  D  W :   W  F  G  I  Q  L  N  P  E  F  M  G  I  D  L  K :   F  F  F  V  R  A  G  M  M  G  W  L  L  I  N  L  S  V  L  A  K  C  V  V  E  A  K  L  S  Q  S  M  I  L  Y  Q  L  F  C  G  :  L  Y  I  L  D  Y  F  F  Y  E  E  F  M  T  S  T :   W  D  I  I  A  E  R  L  G  Y  M  L </first_frame>
            <second_frame>  *  T  F  N  I  C  *  W  I  S  I  I  S  S  F  L  S  L  H  H  G  L  R :   C  L  C  *  S  D  F  F  S  I  *  L  P  L  D  L  F  Y  P  E  N  L  F  L  G  R  L  Y  L  M  E  L  D  S  I  I  V  A  M  :  V  Y  Y  H  F  C  C  W  F  C  F  L  E  L  G  R  R  *  I  L  F  H  L  L :   L  *  Q  I  E  D  L  S  F  C  P  Q  H  L  S  L  V  F  L :   *  H  *  C  F  I  W  L  A  *  T  H  V  Q  R  V  H  H  *  N  L  M  S  Q  E  I  *  S  M  T   : G  G  L  G  Y  N  *  I  L  N  S  W  A  L  I  S   : N  F  S  L  L  E  L  V  *  W  D  G  Y  L  S  I  F  Q  F  L  Q  N  V  L  *  R  L  N  *  A  N  Q  *  F  S  T  S  Y  F  V  G :   S  T  S  L  T  T  S  S  M  K  S  S  *  P  P   : H  G  I  *  *  Q  R  G  W  A  T  C   </second_frame>
            <third_frame>   E  P  S  I  S  A  N  G  S  Q  *  S  L  H  F  S  H  S  I  M  D  F   : G  V  Y  V  D  R  I  F  S  L  F  S  Y  R  W  I  Y  S  T  R  K  T  C  S  W  G  D  F  I  *  W  N  S  T  P  L  S  L  Q  W :   F  I  I  T  S  V  V  G  F  A  S  W  S  W  V  A  D  E  S  C  F  T  Y   : C  Y  S  R  *  R  T  *  A  F  V  H  N  T  Y  L  *  C  S   : C  D  I  D  A  L  F  G  W  P  E  L  T  C  K  E  F  I  T  E  T  S  C  L  R  K  S  N  P  *  L  :  V  V  W  D  T  T  E  S  *  I  H  G  H  *  S  Q  :  I  F  L  C  *  S  W  Y  D  G  M  V  T  Y  Q  S  F  S  S  C  K  M  C  C  R  G  *  I  E  P  I  N  D  S  L  P  A  I  L  W   : A  L  H  P  *  L  L  L  L  *  R  V  H  D  L  H  :  M  G  Y  N  S  R  E  V  G  L  H  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0089I03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27733" stop="27801"/>
                    <exon start="27900" stop="28017"/>
                    <exon start="28899" stop="28969"/>
                    <exon start="29797" stop="29853"/>
                    <exon start="30000" stop="30091"/>
                    <exon start="30862" stop="30909"/>
                    <exon start="31415" stop="31535"/>
                    <exon start="31625" stop="31671"/>
                    <exon start="32732" stop="32768"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLQYLLMDLNNLFISLTPSWTSVSMLIGFFLYLATVGSILPGKLVPGATLSDGTRLHYRCNGLLSLLLLVLLLGVGSQMNLVSPTAIADRGLELLSTTLIFSVLVTLMLYLVGLNSRAKSSSLKPHVSGNLIHDWWFGIQLNPEFMGIDLKFFFVRAGMMGWLLINLSVLAKCVVEAKLSQSMILYQLFCGLYILDYFFYEEFMTSTWDIIAERLGYML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 542 chains have been computed
$ 
$ memory statistics:
$ 1129200 bytes spliced alignments in total
$ 482 spliced alignments have been stored
$ 2342 bytes was the average size of a spliced alignment
$ 39880 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 7976 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 593 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 11:27:13
-->
