<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:18:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545182" ref_strand="+" ref_description="SGN-E545182 [TUS-67-O10](-)">
      <seq>atgcagatgtatccatcgctgatgatgagctgaacgaagatgaagttttctggataggagacttcactgaacctaagcgccgctctacttctccttcttcaatcagtagtcggaaaactttccttcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcctgttgtttatcggaaaccttcgataacttcctcacctactagtacaaaactgtttcattcaccgccggttgcatcagcgatggctttttctcgagggtttcctacgattcccaaacctccattggatagagaacatagctataaccgtaactattcacaaactatgccggtgaggaagttccaacactcagtgccagtgaacgtgccgatgatgccgaagaaggcaccgagaagtgaccttgctgacgtagaaatcgatgatgatgacggcgatgatgagatgcttcctccgcatgagatcgttgccagaggatcagctagatcacttaaaaccacgttttcggtgcttgaaggcgtgggaagaacactcaaagggagagatttttgtcgagttcgcaatgctgttttccgccaaacaggttttctagattgaaacgataaggaacagttcagttaattttgatatatctctgtgaattatacttattgttaatcgatctggactgaggttttcctccaaaaacattatagctggacagtgaatttttctagccaactttcagtcatggagtacatcattaaataatattatacaatggagatagtcctatatgttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10405" stop="8997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10105" g_stop="9298" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="809" polyA_stop="818"/>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E545182" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10105" e_stop="9298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGTGAATTATACTTATTGTTAATCGATCTGGACTGAGGTTTTCCTCCAAAAACATTATAGCTGGACAGTGAATTTTTCTAGCCAACTTTCAGTCATGGAGTACATCATTAAATAATATTATACAATGGAGATAGTCCTATATGTTTTTTC</genome_strand>
        <mrna_strand>ATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATTTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGTGAATTATACTTATTGTTAATCGATCTGGACTGAGGTTTTCCTCCAAAAACATTATAGCTGGACAGTGAATTTTTCTAGCCAACTTTCAGTCATGGAGTACATCATTAAATAATATTATACAATGGAGATAGTCCTATATGTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727209" ref_strand="+" ref_description="SGN-E727209 [LA14AC01]">
      <seq>ccgattctctgatggacagtaacggcgtcgttagctttcaccaccggcgatcgccgtcctccgatcgatttctcggcgtattctctccaccacagagtgatagtgctatcggcgatgcagatgtatccatcgctgatgatgagctgaacgaagatgaagttttctggataggagacttcactgaacctaagcgccgctctacttctccttcttcaatcagtagtcggaaaactttccttcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcctgttgtttatcggaaaccttcgataacttcctcacctactagtacaaaactgtttcattcaccgccggttgcatcagcgatggctttttctcgagggtttcctacgattcccaaacctccattggatagagaacatagctataaccgtaactattcacaaactatgccggtgaggaagttccaacactcagtgccagtgaacgtgccgatgatgccgaagaaggcaccgagaagtgaccttgctgacgtagaaatcgatgatgatgacggcgatgatgagatgcttcctccgcatgagatcgttgccagaggatcagctagatcacttaaaaccacgttttcggtgcttgaaggcgtgggaagaacactcaaagggagagatctttgtcgagttcgcaatgctgttttccgccaaacaggttttctagattgaaacgataaggaacagttcagttaattttgatatatctctgtgaattatacttattgttaatcgatctggactgaggttttcctccaaaaacattatagctggacagtgaatttttctagccaactttcagtcatggagtacatcattaaataatattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10517" stop="9026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10219" g_stop="9326" g_length="894"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="894" r_length="894" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E727209" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10219" e_stop="9326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGTGAATTATACTTATTGTTAATCGATCTGGACTGAGGTTTTCCTCCAAAAACATTATAGCTGGACAGTGAATTTTTCTAGCCAACTTTCAGTCATGGAGTACATCATTAAATAATATTATA</genome_strand>
        <mrna_strand>CCGATTCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGTGAATTATACTTATTGTTAATCGATCTGGACTGAGGTTTTCCTCCAAAAACATTATAGCTGGACAGTGAATTTTTCTAGCCAACTTTCAGTCATGGAGTACATCATTAAATAATATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697720" ref_strand="+" ref_description="SGN-E697720 [FA03DG09]">
      <seq>cacgtttaagctctgatggacagtaacggcgtcgttagctttcaccaccggcgatcgccgtcctccgatcgatttctcggcgtattctctccaccacagagtgatagtgctatcggcgatgcagatgtatccatcgctgatgatgagctgaacgaagatgaagttttctggataggagacttcactgaacctaagcgccgctctacttctccttcttcaatcagtagtcggaaaactttccttcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcctgttgtttatcggaaaccttcgataacttcctcacctactagtacaaaactgtttcattcaccgccggttgcatcagcgatggctttttctcgagggtttcctacgattcccaaacctccattggatagagaacatagctataaccgtaactattcacaaactatgccggtgaggaagttccaacactcagtgccagtgaacgtgccgatgatgccgaagaaggcaccgagaagtgaccttgctgacgtagaaatcgatgatgatgacggcgatgatgagatgcttcctccgcatgagatcgttgccagaggatcagctagatcacttaaaaccacgttttcggtgcttgaaggcgtgggaagaacactcaaagggagagatctttgtcgagttcgcaatgctgttttccgccaaacaggttttctagattgaaacgataaggaacagttcagttaattttgatatatctctgtggaattatacttattgttaatcgatctggactgaagttttcctccaaaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10516" stop="9092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10224" g_stop="9392" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E697720" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10224" e_stop="9392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGAGAAGCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGT-GAATTATACTTATTGTTAATCGATCTGGACTGAGGTTTTCCTCCAAAAACATT</genome_strand>
        <mrna_strand>CACG-TTTAAGCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGTGGAATTATACTTATTGTTAATCGATCTGGACTGAAGTTTTCCTCCAAAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545183" ref_strand="+" ref_description="SGN-E545183 [TUS-67-O10]">
      <seq>ctctgatggacagtaacggcgtcgttagctttcaccaccggcgatcgccgtcctccgatcgatttctcggcgtattctctccaccacagagtgatagtgctatcggcgatgcagatgtatccatcgctgatgatgagctgaacgaagatgaagttttctggataggagacttcactgaacctaagcgccgctctacttctccttcttcaatcagtagtcggaaaactttccttcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcctgttgtttatcggaaaccttcgataacttcctcacctactagtacaaaactgtttcattcaccgccggttgcatcagcgatggctttttctcgagggtttcctacgattcccaaacctccattggatagagaacatagctataaccgtaactattcacaaactatgccggtgaggaagttccaacactcagtgccagtgaacgtgccgatgatgccgaagaaggcaccgagaagtgaccttgctgacgtagaaatcgatgatgatgacggcgatgatgagatgcttcctccgcatgagatcgttgccagaggatcagctagatcacttaaaaccacgttttcggtgcttgaaggcgtgggaagaacactcaaagggagagatttttgtcgagttcgcaatgctgttttccgccaacaggttttctagattgaaacgatnagggacagttcagttaattttgatatatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10513" stop="9147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10213" g_stop="9447" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E545183" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10213" e_stop="9447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCT</genome_strand>
        <mrna_strand>CTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATTTTTGTCGAGTTCGCAATGCTGTTTTCCGCC-AACAGGTTTTCTAGATTGAAACGATNAGGGACAGTTCAGTTAATTTTGATATATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596463" ref_strand="+" ref_description="SGN-E596463 [39946]">
      <seq>gctcgatggaccgaaacggcgtcgttagcttgcacgaatggcgatcgccgttctccgatcgatttctcggcgtattctctccaccgcagagtgatagtgctatcggcggtgcagatgtatccatcgctgacgatgagctgaacgaagatgaagttttctggacaggggacttcactgaacctaagcgccactctacttctccttcttcaatcagtcgtcggaaaactttccgtcagccggagaaattcggtattctcgctgcattgcctgatgatcaccggaaacttaaccgtcccgttgtttatcggaaaccttcgataacttcctcccctactagtacaaaactgtttcattcacccccgatttcatcagcgatggctttttctcgagcgtttcctacgattcccaagcctccattggatagagaacacagctataaccgtaaccattcacaaactatgccggtgaggaagttccaacactcagtgccagtgaacgtgccgatgatgccgaagaaggcaccgagaagtgaccttgctgacgtagaaatcgatgatgatgacggcgatgatgagatgcttcctccgcatgagatcgtagccagaggatcagctagatcacttaaaaccacgttttcggtgcttgaaggcgtgggaagaacactcaaaggggagagatctttgtcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10514" stop="9227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="9527" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E596463" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="9527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAA-GGGAGAGATCTTTGTCGAG</genome_strand>
        <mrna_strand>GCTC-GATGGACCGAAACGGCGTCGTTAGCTTGCACGAATGGCGATCGCCGTTCTCCGATCGATTTCTCGGCGTATTCTCTCCACCGCAGAGTGATAGTGCTATCGGCGGTGCAGATGTATCCATCGCTGACGATGAGCTGAACGAAGATGAAGTTTTCTGGACAGGGGACTTCACTGAACCTAAGCGCCACTCTACTTCTCCTTCTTCAATCAGTCGTCGGAAAACTTTCCGTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGATGATCACCGGAAACTTAACCGTCCCGTTGTTTATCGGAAACCTTCGATAACTTCCTCCCCTACTAGTACAAAACTGTTTCATTCACCCCCGATTTCATCAGCGATGGCTTTTTCTCGAGCGTTTCCTACGATTCCCAAGCCTCCATTGGATAGAGAACACAGCTATAACCGTAACCATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTAGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGGAGAGATCTTTGTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596794" ref_strand="+" ref_description="SGN-E596794 [40283]">
      <seq>gctcgatggaccgaaacggcgtcgttagctttcaccaccggcgatcgccgtcctccgatcgatttctcggcgtattctctccaccgcagagtgatagtgctatcggcgatgcagatgtatccatcgctgacgatgagctgaacgaagatgaagttttctggacaggggacttcactgaacctaagcgccactctacttctccttcttcaatcagtcgtcggaaaactttccgtcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcccgttgtttatcggaaaccttcgataacttcctctcctactagtacaaaactgtttcattcaccgccgatttcatcagcgatggcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10514" stop="9530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="9830" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E596794" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="9830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTT</genome_strand>
        <mrna_strand>GCTC-GATGGACCGAAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCGCAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGACGATGAGCTGAACGAAGATGAAGTTTTCTGGACAGGGGACTTCACTGAACCTAAGCGCCACTCTACTTCTCCTTCTTCAATCAGTCGTCGGAAAACTTTCCGTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCCGTTGTTTATCGGAAACCTTCGATAACTTCCTCTCCTACTAGTACAAAACTGTTTCATTCACCGCCGATTTCATCAGCGATGGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596886" ref_strand="+" ref_description="SGN-E596886 [40377]">
      <seq>gctcgatggaccgaaacggcgtcgttagctttcaccaccggcgatcgccgtcctccgatcgatttctcggcgtattctctccaccgcagagtgatagtgctatcggcgatgcagatgtatccatcgctgacgatgagctgaacgaagatgaagttttctggacaggggacttcactgaacctaagcgccactctacttctccttcttcaatcagtcgtcggaaaactttccgtcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcccgttgtttatcggaaaccttcgataacttcctctcctactagtacaaaactgtttcattcaccgccgatttcatcagcgatggcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10514" stop="9530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="9830" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E596886" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="9830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTT</genome_strand>
        <mrna_strand>GCTC-GATGGACCGAAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCGCAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGACGATGAGCTGAACGAAGATGAAGTTTTCTGGACAGGGGACTTCACTGAACCTAAGCGCCACTCTACTTCTCCTTCTTCAATCAGTCGTCGGAAAACTTTCCGTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCCGTTGTTTATCGGAAACCTTCGATAACTTCCTCTCCTACTAGTACAAAACTGTTTCATTCACCGCCGATTTCATCAGCGATGGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308334" ref_strand="+" ref_description="SGN-E308334 [cLEZ-6-O7]">
      <seq>tctgatggacagaacggcgtcgtagctttcaccaccggcgacgccgcctccgacgattctcggcgattctctccaccacagagtgatagtgctatcggcgatgcagatgtatccatcgctgatgatgagctgaacgaagatgaagttttctggataggagacttcactgaacctaagcgccgctctacttctccttcttcaatcagtagtcggaaaactttccttcagccggagaaattcggtattctcgctgcattgcctgaggatcaccggaaacttaaccgtcctgttagtttaatcggaaacctnntcgataacttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10512" stop="9600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10212" g_stop="9886" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E308334" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10212" e_stop="9886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTT-GTTT-ATCGGAAACCT--TCGATAACTTCCTC</genome_strand>
        <mrna_strand>TCTGATGGACAG-AACGGCGTCG-TAGCTTTCACCACCGGCGA-CGCCG-CCTCCGA-CGA-TTCTCGGCG-ATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTAGTTTAATCGGAAACCTNNTCGATAACTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308333" ref_strand="+" ref_description="SGN-E308333 [cLEZ-6-O5]">
      <seq>tctgatggacagtaacggcgtcggtagctttcaccaccggcgatcgccgccctccgatcgatttctcggcggattctctccaccacacagtgatagtgctatcggcgatgcagatgtatccatccctgatgatgagctgaacgaatatgaagggttctggataggagacttcactgaacctaagcgccgctctactctctccttgttcaatcagtagtcggaaaactttccttcagccggagaaattcggtattctcgctgcattgcctgaggatcaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="-" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="10512" stop="9634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10212" g_stop="9934" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="-" ref_id="SGN-E308333" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10212" e_stop="9934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACT-TCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCG</genome_strand>
        <mrna_strand>TCTGATGGACAGTAACGGCGTCGGTAGCTTTCACCACCGGCGATCGCCGCCCTCCGATCGATTTCTCGGCGGATTCTCTCCACCACACAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCCCTGATGATGAGCTGAACGAATATGAAGGGTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTCTCTCCTTGTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411314" ref_strand="+" ref_description="SGN-E411314 [STM-14-B9]">
      <seq>attgggtacgggccccccctcgagactagttctcttccgactcttccattaagacccaaagtcacgagtagacctttgcacaaaccgcaacccatcgccaccgttctccggcagaaactaatcgccgaacagccatgaacaccatgcaacgaagtggatcaggttcgttacagagccctagatccccatcttcacaagcaccgtttttatcagtatcagttacggatccagctaaaatgggtaatggagttcaagcttatatctcctacaaagtcatcactaagacaaatttgccagagtaccaagggaatgaaaagattgtgattcgacgttatagtgattttgtatggttacacgatcgtctttttgagaaatacaagggcatttttattcctccacttccagagaagagcacagtagaaaagttcagatttagtgcagaatttattgaaatgaggcgtcaagctctggatgtgtttgtaaacagaatagcttcacatcatgaacttcggcaaagtgatgatttgagaatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="14807" stop="18085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15122" g_stop="15229" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="146" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15230" i_stop="15335" i_length="106">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15336" g_stop="15473" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="284" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17152" g_stop="17288" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="420" r_length="136" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17289" i_stop="17667" i_length="379">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17668" g_stop="17785" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="538" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E411314" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15122" e_stop="15229"/>
          <exon e_start="15336" e_stop="15473"/>
          <exon e_start="17152" e_stop="17288"/>
          <exon e_start="17668" e_stop="17785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTTCCATTAAAACCCAAAGTCACGAGTAGACCTTTGCACAAACCGCAACCCATCGCCACCGTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATGGTAATTGTGTGGATTCCGTCATTATTTTGAATTTGTAGTCAATTTTTCGAATTTATAAGGATGAATCTTCGTATTGTTTGATTTTGAATGTTGTATAATGGTGCAGCAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAGGTCGTTGATTCATTGCCTTCTCTTTCCATTTACTAGTTATGCTTATACATGTTTAATTGTATAGCTAGTAGTAGTATTATGCTCGAAGTTGCTGGATTAGGGCGAACGTCAAGTTCATATTTTCTAAGAAACCCCTTTATGGATCTCGAACTGGGGTTTCCTGTACTTCAGAGAAGCTAATTGCATTAAGGTTGACTGAATCTATGATCAAATTCAATAATATCTGATAAGACTAAGAATAACATATAGAATCAGAGTAAACAAATGGAAGGACTTCCTGTTGGATGTATATTTGGAAAGATGCAACCTTTAAGCTTGGCATAATTTACATGAGTTTGAAGAGCAAAACGTCTTGATTTGATACGATTGACATTTGAGATTTTGTTCTCATGGCGATATGAAGTTTGTAGTTCAAAATATGTCATCCATAGAAAGAGAAACTATATAGTAAGGTGGGGTTTTTAAGAGACGTTAGGAAATTGGAGAGTCGAATGTTACACATGGATATATCTATGCTTAGTTATTTATTGTGCATATCTTGATTCTACTTGTATTTCATTGTTTAACCCTTCCAGGAGTTCCGCGAATAAGTTAAAGAAAGGGTAGTCTTATACTTCTAATTGCAAAGGAAGTTTTGAATTCTTCTTTTGATAGGGGTGCTGTGACTTGAAATCAAGGTCTCTGCTCTAAATTCTAATACAACAAGTACACATCAATATAGGAATCCTTACAGTGCGGGTTGCACAATTTAAGCCCGTCTTATCAACTTGTTTTTGTTGTGAGAATTCATCATAGATTGCTAGTTGTGCGCTAGTTATTAACCTACCACAATCCTCCCTCTTTATCTATGTTGGGATCAGCAATATAAGTGAACTCACTCATGCAAAGTTAGGACCTCTACTGTAAGACTATATTGGATAGTGTGAAGTGTGAACTACTTATTTAAATTTTGAGTTATATTTCTATTTTTTTCACTTTATGCCCGCAACAACCACATCAGTGTTTGCATAAACCTATTTCTTTTAAGTCACTTGCTCTATTCTCGCTGAAACCTTCTTTAATGTACTTGGGAATAAGTACTTTATAGATACTTTTACCATCTAGGATATTTGTACTTCCGTTTCTCTCGTTCAGTTCTAAAGATCTTTTCCCCTTAAAGTATGCTTTTATACACATAACATATTTAATTTGTTGGTCTTTTGGTCATGTTGTAAGGAAAAGTTCTTTGATATTTAGTGGGGTGGTTTTAGTTTGGATCTTGAGGCCTGAAATGTGAACCTCATAGTTTGTGTTAGTGTCCAGGATTGATTGAGGGTATAGGCTATAGCCTTGAACAATCCTTCTTACTACATGAGTTAGCTTTTGAGGTTGAGTTAGGCGAAAATTCATTTTTCTAATAGGCTGAACAAGCAATGAAACAACTACTTAAGTACGTTTGAGACTCAATTTAATCTCCAGAGACTCTTTTTGGGTCCAGAGCTTACGCATCCCAATCCCTGCATCCAATGGATGTTATTTTGCTGAACTTAAGATTCTATAATATTCTGCTTCTTCTGTTTGTTTTTTTCTCTTGCCCTGTTTCTGGAACGGACATTCATATGTTTTTTATCAGCAGAGTATAGTATATACTTCTCATGATTATCCTCAAGTTCTCATTCACCATTTTTCTTCACGACAGACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAGGTATTGACTACACTTCTTTCTCGTGCTGGTTATCTCTTTGACTTTTCTCTAACTCTAAGTGATTTTAAAACCAATAGGTGTCCAATATGTTCAATCTTGAATCTGTTGATTTATCGTTGCTTGTTGGAAATGACTAAATGAGACGGACAAGAATTGGGAGTCATGTAGGCGGAAGTTGTTATAGATTGACATAATTAACTGTGTCAAACATGTGTAAGGATGTCTGTGTTTTGGGGCATCAATCCCATTTTCTTTGGAGAAGTATAGGTTATAAAGATTTAAGTATTGGAATCTATCAAGGGGAGCCACTAGCTTTTGCACCAATAAAATGATCTTATTTTCAGGCATTTTGTGATTATTATTATCTACCTTCTTGCAGAAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGACGATTTGAGAATCTTCTT</genome_strand>
        <mrna_strand>GACTCTTCCATTAAGACCCAAAGTCACGAGTAGACCTTTGCACAAACCGCAACCCATCGCCACCGTTCTCCGGCAGAAACTAATCGCCGAACAGCCATGAACACCATG..........................................................................................................CAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCCCCATCTTCACAAGCACCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATTTGCCAGAGTACCAAGGGAATGAAAAGATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGTCTTTTTGAGAAATACAAGG-GCATTTTTATTCCTCCACTTCCAGAGAAGAGCACAGTAG...........................................................................................................................................................................................................................................................................................................................................................................................AAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGTCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGATGATTTGAGAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246916" ref_strand="+" ref_description="SGN-E246916 [cLEF-41-D4]">
      <seq>taaaacccaaagtcacgagtagacctttgcacaaaccgcaacccatcgccaccgttctccggtagcaactaatcgccgaacagccatgaacaccatgcaacgaagtggatcaggttcgttacagagccctagatctccatcttcacaagcgccgtttttatcagtatcagttacggatccagctaaaatgggtaatggagttcaagcttatatctcctacaaagtcatcactaagacaaatttggcagagtaccaagggaatgaaaagattgtgattcgacgttatagtgattttgtatggttacacgatcggctttttgagaaatacaagggtatttttattcctccacttccagagaagagcactgtagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="14833" stop="17588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15133" g_stop="15229" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15230" i_stop="15335" i_length="106">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15336" g_stop="15473" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="235" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17152" g_stop="17288" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="371" r_length="136" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E246916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15133" e_stop="15229"/>
          <exon e_start="15336" e_stop="15473"/>
          <exon e_start="17152" e_stop="17288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCAAAGTCACGAGTAGACCTTTGCACAAACCGCAACCCATCGCCACCGTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATGGTAATTGTGTGGATTCCGTCATTATTTTGAATTTGTAGTCAATTTTTCGAATTTATAAGGATGAATCTTCGTATTGTTTGATTTTGAATGTTGTATAATGGTGCAGCAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAGGTCGTTGATTCATTGCCTTCTCTTTCCATTTACTAGTTATGCTTATACATGTTTAATTGTATAGCTAGTAGTAGTATTATGCTCGAAGTTGCTGGATTAGGGCGAACGTCAAGTTCATATTTTCTAAGAAACCCCTTTATGGATCTCGAACTGGGGTTTCCTGTACTTCAGAGAAGCTAATTGCATTAAGGTTGACTGAATCTATGATCAAATTCAATAATATCTGATAAGACTAAGAATAACATATAGAATCAGAGTAAACAAATGGAAGGACTTCCTGTTGGATGTATATTTGGAAAGATGCAACCTTTAAGCTTGGCATAATTTACATGAGTTTGAAGAGCAAAACGTCTTGATTTGATACGATTGACATTTGAGATTTTGTTCTCATGGCGATATGAAGTTTGTAGTTCAAAATATGTCATCCATAGAAAGAGAAACTATATAGTAAGGTGGGGTTTTTAAGAGACGTTAGGAAATTGGAGAGTCGAATGTTACACATGGATATATCTATGCTTAGTTATTTATTGTGCATATCTTGATTCTACTTGTATTTCATTGTTTAACCCTTCCAGGAGTTCCGCGAATAAGTTAAAGAAAGGGTAGTCTTATACTTCTAATTGCAAAGGAAGTTTTGAATTCTTCTTTTGATAGGGGTGCTGTGACTTGAAATCAAGGTCTCTGCTCTAAATTCTAATACAACAAGTACACATCAATATAGGAATCCTTACAGTGCGGGTTGCACAATTTAAGCCCGTCTTATCAACTTGTTTTTGTTGTGAGAATTCATCATAGATTGCTAGTTGTGCGCTAGTTATTAACCTACCACAATCCTCCCTCTTTATCTATGTTGGGATCAGCAATATAAGTGAACTCACTCATGCAAAGTTAGGACCTCTACTGTAAGACTATATTGGATAGTGTGAAGTGTGAACTACTTATTTAAATTTTGAGTTATATTTCTATTTTTTTCACTTTATGCCCGCAACAACCACATCAGTGTTTGCATAAACCTATTTCTTTTAAGTCACTTGCTCTATTCTCGCTGAAACCTTCTTTAATGTACTTGGGAATAAGTACTTTATAGATACTTTTACCATCTAGGATATTTGTACTTCCGTTTCTCTCGTTCAGTTCTAAAGATCTTTTCCCCTTAAAGTATGCTTTTATACACATAACATATTTAATTTGTTGGTCTTTTGGTCATGTTGTAAGGAAAAGTTCTTTGATATTTAGTGGGGTGGTTTTAGTTTGGATCTTGAGGCCTGAAATGTGAACCTCATAGTTTGTGTTAGTGTCCAGGATTGATTGAGGGTATAGGCTATAGCCTTGAACAATCCTTCTTACTACATGAGTTAGCTTTTGAGGTTGAGTTAGGCGAAAATTCATTTTTCTAATAGGCTGAACAAGCAATGAAACAACTACTTAAGTACGTTTGAGACTCAATTTAATCTCCAGAGACTCTTTTTGGGTCCAGAGCTTACGCATCCCAATCCCTGCATCCAATGGATGTTATTTTGCTGAACTTAAGATTCTATAATATTCTGCTTCTTCTGTTTGTTTTTTTCTCTTGCCCTGTTTCTGGAACGGACATTCATATGTTTTTTATCAGCAGAGTATAGTATATACTTCTCATGATTATCCTCAAGTTCTCATTCACCATTTTTCTTCACGACAGACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAG</genome_strand>
        <mrna_strand>TAAAACCCAAAGTCACGAGTAGACCTTTGCACAAACCGCAACCCATCGCCACCGTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATG..........................................................................................................CAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATTTGGCAGAGTACCAAGGGAATGAAAAGATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGG-GTATTTTTATTCCTCCACTTCCAGAGAAGAGCACTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269763" ref_strand="+" ref_description="SGN-E269763 [cLEM-17-J2]">
      <seq>cacaaaccgcaacccatcgccaccgttctccggtagcaactaatcgccgaacagccatgaacaccatgcaacgaagtggatcaggttcgttacagagccctagatctccatcttcacaagcgccgtttttatcagtatcagttacggatccagctaaaatgggtaatggagttcaagcttatatctcctacaaagtcatcactaagacaaatttggcagagtaccaagggaatgaaaagattgtgattcgacgttatagtgattttgtatggttacacgatcggctttttgagaaatacaagggtatttttattcctccacttccagagaagagcactgtagaaaagttcagatttagtgcagaatttattgaaatgaggcgccaagctctggatgtgtttgtaaacagaatagcttcacatcatgaacttcggcaaagtgacgatttgagaatcttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="14862" stop="18087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15162" g_stop="15229" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15230" i_stop="15335" i_length="106">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15336" g_stop="15473" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="206" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17152" g_stop="17288" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="342" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17289" i_stop="17667" i_length="379">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17668" g_stop="17787" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="462" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E269763" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15162" e_stop="15229"/>
          <exon e_start="15336" e_stop="15473"/>
          <exon e_start="17152" e_stop="17288"/>
          <exon e_start="17668" e_stop="17787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACCGCAACCCATCGCCACCGTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATGGTAATTGTGTGGATTCCGTCATTATTTTGAATTTGTAGTCAATTTTTCGAATTTATAAGGATGAATCTTCGTATTGTTTGATTTTGAATGTTGTATAATGGTGCAGCAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAGGTCGTTGATTCATTGCCTTCTCTTTCCATTTACTAGTTATGCTTATACATGTTTAATTGTATAGCTAGTAGTAGTATTATGCTCGAAGTTGCTGGATTAGGGCGAACGTCAAGTTCATATTTTCTAAGAAACCCCTTTATGGATCTCGAACTGGGGTTTCCTGTACTTCAGAGAAGCTAATTGCATTAAGGTTGACTGAATCTATGATCAAATTCAATAATATCTGATAAGACTAAGAATAACATATAGAATCAGAGTAAACAAATGGAAGGACTTCCTGTTGGATGTATATTTGGAAAGATGCAACCTTTAAGCTTGGCATAATTTACATGAGTTTGAAGAGCAAAACGTCTTGATTTGATACGATTGACATTTGAGATTTTGTTCTCATGGCGATATGAAGTTTGTAGTTCAAAATATGTCATCCATAGAAAGAGAAACTATATAGTAAGGTGGGGTTTTTAAGAGACGTTAGGAAATTGGAGAGTCGAATGTTACACATGGATATATCTATGCTTAGTTATTTATTGTGCATATCTTGATTCTACTTGTATTTCATTGTTTAACCCTTCCAGGAGTTCCGCGAATAAGTTAAAGAAAGGGTAGTCTTATACTTCTAATTGCAAAGGAAGTTTTGAATTCTTCTTTTGATAGGGGTGCTGTGACTTGAAATCAAGGTCTCTGCTCTAAATTCTAATACAACAAGTACACATCAATATAGGAATCCTTACAGTGCGGGTTGCACAATTTAAGCCCGTCTTATCAACTTGTTTTTGTTGTGAGAATTCATCATAGATTGCTAGTTGTGCGCTAGTTATTAACCTACCACAATCCTCCCTCTTTATCTATGTTGGGATCAGCAATATAAGTGAACTCACTCATGCAAAGTTAGGACCTCTACTGTAAGACTATATTGGATAGTGTGAAGTGTGAACTACTTATTTAAATTTTGAGTTATATTTCTATTTTTTTCACTTTATGCCCGCAACAACCACATCAGTGTTTGCATAAACCTATTTCTTTTAAGTCACTTGCTCTATTCTCGCTGAAACCTTCTTTAATGTACTTGGGAATAAGTACTTTATAGATACTTTTACCATCTAGGATATTTGTACTTCCGTTTCTCTCGTTCAGTTCTAAAGATCTTTTCCCCTTAAAGTATGCTTTTATACACATAACATATTTAATTTGTTGGTCTTTTGGTCATGTTGTAAGGAAAAGTTCTTTGATATTTAGTGGGGTGGTTTTAGTTTGGATCTTGAGGCCTGAAATGTGAACCTCATAGTTTGTGTTAGTGTCCAGGATTGATTGAGGGTATAGGCTATAGCCTTGAACAATCCTTCTTACTACATGAGTTAGCTTTTGAGGTTGAGTTAGGCGAAAATTCATTTTTCTAATAGGCTGAACAAGCAATGAAACAACTACTTAAGTACGTTTGAGACTCAATTTAATCTCCAGAGACTCTTTTTGGGTCCAGAGCTTACGCATCCCAATCCCTGCATCCAATGGATGTTATTTTGCTGAACTTAAGATTCTATAATATTCTGCTTCTTCTGTTTGTTTTTTTCTCTTGCCCTGTTTCTGGAACGGACATTCATATGTTTTTTATCAGCAGAGTATAGTATATACTTCTCATGATTATCCTCAAGTTCTCATTCACCATTTTTCTTCACGACAGACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAGGTATTGACTACACTTCTTTCTCGTGCTGGTTATCTCTTTGACTTTTCTCTAACTCTAAGTGATTTTAAAACCAATAGGTGTCCAATATGTTCAATCTTGAATCTGTTGATTTATCGTTGCTTGTTGGAAATGACTAAATGAGACGGACAAGAATTGGGAGTCATGTAGGCGGAAGTTGTTATAGATTGACATAATTAACTGTGTCAAACATGTGTAAGGATGTCTGTGTTTTGGGGCATCAATCCCATTTTCTTTGGAGAAGTATAGGTTATAAAGATTTAAGTATTGGAATCTATCAAGGGGAGCCACTAGCTTTTGCACCAATAAAATGATCTTATTTTCAGGCATTTTGTGATTATTATTATCTACCTTCTTGCAGAAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGACGATTTGAGAATCTTCTTGC</genome_strand>
        <mrna_strand>CACAAACCGCAACCCATCGCCACCGTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATG..........................................................................................................CAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATTTGGCAGAGTACCAAGGGAATGAAAAGATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGG-GTATTTTTATTCCTCCACTTCCAGAGAAGAGCACTGTAG...........................................................................................................................................................................................................................................................................................................................................................................................AAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGACGATTTGAGAATCTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442326" ref_strand="+" ref_description="SGN-E442326 [cSTA-33-C3]">
      <seq>gttctccggcagaaactaatcgccgaacagccatgaacaccatgcaacgaagtggatcaggttcgttacagagccctagatccccatcttcacaagcaccatttttatcagtatcagttacggatccagctaaaatgggtaatggagttcaagcttatatctcctacaaagtcatcactaagacaaatttgccagagtaccaagggaatgaaaagattgtgattcgacgttatagtgattttgtatggttacacgatcgtctttttgagaaatacaagggcatttttattcctccacttccagagaagagcacagtagaaaagttcagatttagtgcagaatttattgaaatgaggcgccaagctttggatgtgtttgtaaacagaatagcttcacatcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="14886" stop="18054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15186" g_stop="15229" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15230" i_stop="15335" i_length="106">
            <donor d_prob="0.986" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15336" g_stop="15473" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="182" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17152" g_stop="17288" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="318" r_length="136" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17289" i_stop="17667" i_length="379">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17668" g_stop="17754" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="405" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E442326" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15186" e_stop="15229"/>
          <exon e_start="15336" e_stop="15473"/>
          <exon e_start="17152" e_stop="17288"/>
          <exon e_start="17668" e_stop="17754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATGGTAATTGTGTGGATTCCGTCATTATTTTGAATTTGTAGTCAATTTTTCGAATTTATAAGGATGAATCTTCGTATTGTTTGATTTTGAATGTTGTATAATGGTGCAGCAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAGGTCGTTGATTCATTGCCTTCTCTTTCCATTTACTAGTTATGCTTATACATGTTTAATTGTATAGCTAGTAGTAGTATTATGCTCGAAGTTGCTGGATTAGGGCGAACGTCAAGTTCATATTTTCTAAGAAACCCCTTTATGGATCTCGAACTGGGGTTTCCTGTACTTCAGAGAAGCTAATTGCATTAAGGTTGACTGAATCTATGATCAAATTCAATAATATCTGATAAGACTAAGAATAACATATAGAATCAGAGTAAACAAATGGAAGGACTTCCTGTTGGATGTATATTTGGAAAGATGCAACCTTTAAGCTTGGCATAATTTACATGAGTTTGAAGAGCAAAACGTCTTGATTTGATACGATTGACATTTGAGATTTTGTTCTCATGGCGATATGAAGTTTGTAGTTCAAAATATGTCATCCATAGAAAGAGAAACTATATAGTAAGGTGGGGTTTTTAAGAGACGTTAGGAAATTGGAGAGTCGAATGTTACACATGGATATATCTATGCTTAGTTATTTATTGTGCATATCTTGATTCTACTTGTATTTCATTGTTTAACCCTTCCAGGAGTTCCGCGAATAAGTTAAAGAAAGGGTAGTCTTATACTTCTAATTGCAAAGGAAGTTTTGAATTCTTCTTTTGATAGGGGTGCTGTGACTTGAAATCAAGGTCTCTGCTCTAAATTCTAATACAACAAGTACACATCAATATAGGAATCCTTACAGTGCGGGTTGCACAATTTAAGCCCGTCTTATCAACTTGTTTTTGTTGTGAGAATTCATCATAGATTGCTAGTTGTGCGCTAGTTATTAACCTACCACAATCCTCCCTCTTTATCTATGTTGGGATCAGCAATATAAGTGAACTCACTCATGCAAAGTTAGGACCTCTACTGTAAGACTATATTGGATAGTGTGAAGTGTGAACTACTTATTTAAATTTTGAGTTATATTTCTATTTTTTTCACTTTATGCCCGCAACAACCACATCAGTGTTTGCATAAACCTATTTCTTTTAAGTCACTTGCTCTATTCTCGCTGAAACCTTCTTTAATGTACTTGGGAATAAGTACTTTATAGATACTTTTACCATCTAGGATATTTGTACTTCCGTTTCTCTCGTTCAGTTCTAAAGATCTTTTCCCCTTAAAGTATGCTTTTATACACATAACATATTTAATTTGTTGGTCTTTTGGTCATGTTGTAAGGAAAAGTTCTTTGATATTTAGTGGGGTGGTTTTAGTTTGGATCTTGAGGCCTGAAATGTGAACCTCATAGTTTGTGTTAGTGTCCAGGATTGATTGAGGGTATAGGCTATAGCCTTGAACAATCCTTCTTACTACATGAGTTAGCTTTTGAGGTTGAGTTAGGCGAAAATTCATTTTTCTAATAGGCTGAACAAGCAATGAAACAACTACTTAAGTACGTTTGAGACTCAATTTAATCTCCAGAGACTCTTTTTGGGTCCAGAGCTTACGCATCCCAATCCCTGCATCCAATGGATGTTATTTTGCTGAACTTAAGATTCTATAATATTCTGCTTCTTCTGTTTGTTTTTTTCTCTTGCCCTGTTTCTGGAACGGACATTCATATGTTTTTTATCAGCAGAGTATAGTATATACTTCTCATGATTATCCTCAAGTTCTCATTCACCATTTTTCTTCACGACAGACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAGGTATTGACTACACTTCTTTCTCGTGCTGGTTATCTCTTTGACTTTTCTCTAACTCTAAGTGATTTTAAAACCAATAGGTGTCCAATATGTTCAATCTTGAATCTGTTGATTTATCGTTGCTTGTTGGAAATGACTAAATGAGACGGACAAGAATTGGGAGTCATGTAGGCGGAAGTTGTTATAGATTGACATAATTAACTGTGTCAAACATGTGTAAGGATGTCTGTGTTTTGGGGCATCAATCCCATTTTCTTTGGAGAAGTATAGGTTATAAAGATTTAAGTATTGGAATCTATCAAGGGGAGCCACTAGCTTTTGCACCAATAAAATGATCTTATTTTCAGGCATTTTGTGATTATTATTATCTACCTTCTTGCAGAAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAAC</genome_strand>
        <mrna_strand>GTTCTCCGGCAGAAACTAATCGCCGAACAGCCATGAACACCATG..........................................................................................................CAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCCCCATCTTCACAAGCACCATTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATTTGCCAGAGTACCAAGGGAATGAAAAGATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGTCTTTTTGAGAAATACAAGG-GCATTTTTATTCCTCCACTTCCAGAGAAGAGCACAGTAG...........................................................................................................................................................................................................................................................................................................................................................................................AAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTTTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607535" ref_strand="+" ref_description="SGN-E607535 [23502]">
      <seq>ttttatcagtatcagttacggatccagctaaaatgggtaatggagttcaagcttatatctcctacaaagtcatcactaagacaaatttgccagagtaccaagggaatgaaaagattgtgattcgacgtcatagtgattttgtatggttacacgatcgtctttttgagaaatacaagggcatttttattcctccacttccagagaagagcacagtagacaagttcagacttagtgcagaatttattgaaatgaggcgccaagctctggatgtgtttgtaaacagaatagcttcacatcatgaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="15094" stop="18057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15394" g_stop="15473" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17152" g_stop="17288" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="216" r_length="136" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17289" i_stop="17667" i_length="379">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17668" g_stop="17757" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="306" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E607535" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15394" e_stop="15473"/>
          <exon e_start="17152" e_stop="17288"/>
          <exon e_start="17668" e_stop="17757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAGGTCGTTGATTCATTGCCTTCTCTTTCCATTTACTAGTTATGCTTATACATGTTTAATTGTATAGCTAGTAGTAGTATTATGCTCGAAGTTGCTGGATTAGGGCGAACGTCAAGTTCATATTTTCTAAGAAACCCCTTTATGGATCTCGAACTGGGGTTTCCTGTACTTCAGAGAAGCTAATTGCATTAAGGTTGACTGAATCTATGATCAAATTCAATAATATCTGATAAGACTAAGAATAACATATAGAATCAGAGTAAACAAATGGAAGGACTTCCTGTTGGATGTATATTTGGAAAGATGCAACCTTTAAGCTTGGCATAATTTACATGAGTTTGAAGAGCAAAACGTCTTGATTTGATACGATTGACATTTGAGATTTTGTTCTCATGGCGATATGAAGTTTGTAGTTCAAAATATGTCATCCATAGAAAGAGAAACTATATAGTAAGGTGGGGTTTTTAAGAGACGTTAGGAAATTGGAGAGTCGAATGTTACACATGGATATATCTATGCTTAGTTATTTATTGTGCATATCTTGATTCTACTTGTATTTCATTGTTTAACCCTTCCAGGAGTTCCGCGAATAAGTTAAAGAAAGGGTAGTCTTATACTTCTAATTGCAAAGGAAGTTTTGAATTCTTCTTTTGATAGGGGTGCTGTGACTTGAAATCAAGGTCTCTGCTCTAAATTCTAATACAACAAGTACACATCAATATAGGAATCCTTACAGTGCGGGTTGCACAATTTAAGCCCGTCTTATCAACTTGTTTTTGTTGTGAGAATTCATCATAGATTGCTAGTTGTGCGCTAGTTATTAACCTACCACAATCCTCCCTCTTTATCTATGTTGGGATCAGCAATATAAGTGAACTCACTCATGCAAAGTTAGGACCTCTACTGTAAGACTATATTGGATAGTGTGAAGTGTGAACTACTTATTTAAATTTTGAGTTATATTTCTATTTTTTTCACTTTATGCCCGCAACAACCACATCAGTGTTTGCATAAACCTATTTCTTTTAAGTCACTTGCTCTATTCTCGCTGAAACCTTCTTTAATGTACTTGGGAATAAGTACTTTATAGATACTTTTACCATCTAGGATATTTGTACTTCCGTTTCTCTCGTTCAGTTCTAAAGATCTTTTCCCCTTAAAGTATGCTTTTATACACATAACATATTTAATTTGTTGGTCTTTTGGTCATGTTGTAAGGAAAAGTTCTTTGATATTTAGTGGGGTGGTTTTAGTTTGGATCTTGAGGCCTGAAATGTGAACCTCATAGTTTGTGTTAGTGTCCAGGATTGATTGAGGGTATAGGCTATAGCCTTGAACAATCCTTCTTACTACATGAGTTAGCTTTTGAGGTTGAGTTAGGCGAAAATTCATTTTTCTAATAGGCTGAACAAGCAATGAAACAACTACTTAAGTACGTTTGAGACTCAATTTAATCTCCAGAGACTCTTTTTGGGTCCAGAGCTTACGCATCCCAATCCCTGCATCCAATGGATGTTATTTTGCTGAACTTAAGATTCTATAATATTCTGCTTCTTCTGTTTGTTTTTTTCTCTTGCCCTGTTTCTGGAACGGACATTCATATGTTTTTTATCAGCAGAGTATAGTATATACTTCTCATGATTATCCTCAAGTTCTCATTCACCATTTTTCTTCACGACAGACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAGGTATTGACTACACTTCTTTCTCGTGCTGGTTATCTCTTTGACTTTTCTCTAACTCTAAGTGATTTTAAAACCAATAGGTGTCCAATATGTTCAATCTTGAATCTGTTGATTTATCGTTGCTTGTTGGAAATGACTAAATGAGACGGACAAGAATTGGGAGTCATGTAGGCGGAAGTTGTTATAGATTGACATAATTAACTGTGTCAAACATGTGTAAGGATGTCTGTGTTTTGGGGCATCAATCCCATTTTCTTTGGAGAAGTATAGGTTATAAAGATTTAAGTATTGGAATCTATCAAGGGGAGCCACTAGCTTTTGCACCAATAAAATGATCTTATTTTCAGGCATTTTGTGATTATTATTATCTACCTTCTTGCAGAAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTC</genome_strand>
        <mrna_strand>TTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATTTGCCAGAGTACCAAGGGAATGAAAAGATTGTGATTCGACGTCATAGTGATTTTGTATGGTTACACGATCGTCTTTTTGAGAAATACAAGG-GCATTTTTATTCCTCCACTTCCAGAGAAGAGCACAGTAG...........................................................................................................................................................................................................................................................................................................................................................................................ACAAGTTCAGACTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250607" ref_strand="+" ref_description="SGN-E250607 [cLEG-7-E6]">
      <seq>ttacggatccagctaaaatgggtaatggagttcaagcttatatctgctacaaagtcatcactaagacaaatttggcagagtaccaagggaatgaaaagattgtgattcgacgtcatagtgattttgtatggatacacgatcgggtttatgagaaatacaagggtatccttattccttgactgccagagaagagcactgtagaatagttcagatttagtgcagaatttattgaaatgaggcgccaagctctggatgtgtttgtaaacagaatagcttcacatcatgaacttcggcaaagtgacgatttgagaatcttcttgcaggctgatgaacagacaatggacagagcaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="15109" stop="18111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15409" g_stop="15473" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17152" g_stop="17288" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="201" r_length="136" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17289" i_stop="17667" i_length="379">
            <donor d_prob="0.988" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17668" g_stop="17801" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="335" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E250607" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15409" e_stop="15473"/>
          <exon e_start="17152" e_stop="17288"/>
          <exon e_start="17668" e_stop="17801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAGGTCGTTGATTCATTGCCTTCTCTTTCCATTTACTAGTTATGCTTATACATGTTTAATTGTATAGCTAGTAGTAGTATTATGCTCGAAGTTGCTGGATTAGGGCGAACGTCAAGTTCATATTTTCTAAGAAACCCCTTTATGGATCTCGAACTGGGGTTTCCTGTACTTCAGAGAAGCTAATTGCATTAAGGTTGACTGAATCTATGATCAAATTCAATAATATCTGATAAGACTAAGAATAACATATAGAATCAGAGTAAACAAATGGAAGGACTTCCTGTTGGATGTATATTTGGAAAGATGCAACCTTTAAGCTTGGCATAATTTACATGAGTTTGAAGAGCAAAACGTCTTGATTTGATACGATTGACATTTGAGATTTTGTTCTCATGGCGATATGAAGTTTGTAGTTCAAAATATGTCATCCATAGAAAGAGAAACTATATAGTAAGGTGGGGTTTTTAAGAGACGTTAGGAAATTGGAGAGTCGAATGTTACACATGGATATATCTATGCTTAGTTATTTATTGTGCATATCTTGATTCTACTTGTATTTCATTGTTTAACCCTTCCAGGAGTTCCGCGAATAAGTTAAAGAAAGGGTAGTCTTATACTTCTAATTGCAAAGGAAGTTTTGAATTCTTCTTTTGATAGGGGTGCTGTGACTTGAAATCAAGGTCTCTGCTCTAAATTCTAATACAACAAGTACACATCAATATAGGAATCCTTACAGTGCGGGTTGCACAATTTAAGCCCGTCTTATCAACTTGTTTTTGTTGTGAGAATTCATCATAGATTGCTAGTTGTGCGCTAGTTATTAACCTACCACAATCCTCCCTCTTTATCTATGTTGGGATCAGCAATATAAGTGAACTCACTCATGCAAAGTTAGGACCTCTACTGTAAGACTATATTGGATAGTGTGAAGTGTGAACTACTTATTTAAATTTTGAGTTATATTTCTATTTTTTTCACTTTATGCCCGCAACAACCACATCAGTGTTTGCATAAACCTATTTCTTTTAAGTCACTTGCTCTATTCTCGCTGAAACCTTCTTTAATGTACTTGGGAATAAGTACTTTATAGATACTTTTACCATCTAGGATATTTGTACTTCCGTTTCTCTCGTTCAGTTCTAAAGATCTTTTCCCCTTAAAGTATGCTTTTATACACATAACATATTTAATTTGTTGGTCTTTTGGTCATGTTGTAAGGAAAAGTTCTTTGATATTTAGTGGGGTGGTTTTAGTTTGGATCTTGAGGCCTGAAATGTGAACCTCATAGTTTGTGTTAGTGTCCAGGATTGATTGAGGGTATAGGCTATAGCCTTGAACAATCCTTCTTACTACATGAGTTAGCTTTTGAGGTTGAGTTAGGCGAAAATTCATTTTTCTAATAGGCTGAACAAGCAATGAAACAACTACTTAAGTACGTTTGAGACTCAATTTAATCTCCAGAGACTCTTTTTGGGTCCAGAGCTTACGCATCCCAATCCCTGCATCCAATGGATGTTATTTTGCTGAACTTAAGATTCTATAATATTCTGCTTCTTCTGTTTGTTTTTTTCTCTTGCCCTGTTTCTGGAACGGACATTCATATGTTTTTTATCAGCAGAGTATAGTATATACTTCTCATGATTATCCTCAAGTTCTCATTCACCATTTTTCTTCACGACAGACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAGGTATTGACTACACTTCTTTCTCGTGCTGGTTATCTCTTTGACTTTTCTCTAACTCTAAGTGATTTTAAAACCAATAGGTGTCCAATATGTTCAATCTTGAATCTGTTGATTTATCGTTGCTTGTTGGAAATGACTAAATGAGACGGACAAGAATTGGGAGTCATGTAGGCGGAAGTTGTTATAGATTGACATAATTAACTGTGTCAAACATGTGTAAGGATGTCTGTGTTTTGGGGCATCAATCCCATTTTCTTTGGAGAAGTATAGGTTATAAAGATTTAAGTATTGGAATCTATCAAGGGGAGCCACTAGCTTTTGCACCAATAAAATGATCTTATTTTCAGGCATTTTGTGATTATTATTATCTACCTTCTTGCAGAAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGACGATTTGAGAATCTTCTTGCAGGCTGATGAACAG</genome_strand>
        <mrna_strand>TTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTGCTACAAAGTCATCACTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATTTGGCAGAGTACCAAGGGAATGAAAAGATTGTGATTCGACGTCATAGTGATTTTGTATGGATACACGATCGGGTTTATGAGAAATACAAGG-GTATCCTTATTCCTTGACTGCCAGAGAAGAGCACTGTAG...........................................................................................................................................................................................................................................................................................................................................................................................AATAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGACGATTTGAGAATCTTCTTGCAGGCTGATGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700882" ref_strand="+" ref_description="SGN-E700882 [FA14BG02]">
      <seq>gtcatattaatacaagtaatttctgcatcattgaaggacccgagaccgttcaagattttgttgcgcctgctcctaatggaagaggtacgtcggctaagaatacaacaaaggttaaagaactctaacactagaggtgagaccggtgaagatgaaaatgagatgccagatatcccatcaacgataccatttcttcctaacatgactccaaagacactaaagcagctttatcttacaagcttttcatttatagctgggattatggtcttcggtggattacttgccccagtacttgagctgaaattaggtctaggaggcacctcatacgaagattttatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggggcagtgggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactgaaccaatttcagtgaatggttcttatcaatcgttgcgtgcaccaactcttaaaagatgtgcgaattgctccgggactggaaaggtaatgtgccctacatgtctgtgtactgggatggtgatggcaagtgaacatgaccttcgaatagatccatttgattaagtacaaattctcattttgtaacttatattcatacaaaaaataattggtcattttggttttgttataagcatagttattatatatagaatatcctttggttatgaagatgataactccctcatctatttaacaatgaaagtgttagaaatttcgttaagcgtatgtgttcaagatttgatataaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="20207" stop="23139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20516" g_stop="20564" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="65" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20565" i_stop="20614" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20615" g_stop="20633" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="84" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20746" g_stop="20862" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="201" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21247" g_stop="21333" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="288" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21469" g_stop="21545" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="365" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21756" g_stop="21883" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="493" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22028" g_stop="22161" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="627" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22162" i_stop="22575" i_length="414">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22576" g_stop="22839" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="892" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E700882" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20516" e_stop="20564"/>
          <exon e_start="20615" e_stop="20633"/>
          <exon e_start="20746" e_stop="20862"/>
          <exon e_start="21247" e_stop="21333"/>
          <exon e_start="21469" e_stop="21545"/>
          <exon e_start="21756" e_stop="21883"/>
          <exon e_start="22028" e_stop="22161"/>
          <exon e_start="22576" e_stop="22839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCTGCATCATTGAAGGACCCGAGACCGTTCAAGATTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAGGTGAGTTTTCTCAAGTTCTTAACATCCTCTAAGGGAACTTAAAGGAACAACTTATTATTTCCCAAGGATTGTACTCTCAAATAGCTTCTTAAAATCCGGATTAATTTTTCAGGTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATGGTAATTTGCCGAGTCCTCTTGTAAACAACTGAAGTATACTAGGGATTCAATTGGTCTTAGGAGGTTTTATACATCCAGTTATAAACAAAAATCGCTGTTTCGGGGAAGTCATTTTTTCATGTTTTGGTTTGTCAAAGTAAGCAACTTGACAAACATAGCGGATCGGAGATTCAAATTTATGAGTTCCTACAACGACCTCAAGTTAATATACAATACATGTGAAGCTTTGCAAGCTTCGTCACTGCTGTAACACTTTTGAGTTGAGATGTCTGGAAGCTTGTCTAACTGACCTATATCATATGAAACTGACGTATTCTGTTTTGTTTGTCGATCAGCATTTTGTGACACTTATTCTCTACTTGGTGCCTTTTTTGTTTGTATCAGACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCGAAGAATAAAACAGTCATATTCGTCCACATTACATGGCCAAAATGAGGCCTTCCCTTGTAGTTAGAATAACATCCTCAACAACAACAAGGTTCGTTGAACCCCTTCTTCCTATCCTTGCTCGTTGCTACCTACGAAATGAGTTCCTCTAAGAAGATGCATGTCACAAATACGCGCATGCATCTCTCATCACATGTTACGATAACTTTCCCTTATCGTATACGTATATATGCTAATGTTTTTTGTTTCATATTATGATATTTTTTGGCTAGGTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACT-CCTCATCTATTTAACAATGAAGGTGTTAGAAATTTCGTTAAGCGTATGTGTTCAAGATTTGATATAAATGT</genome_strand>
        <mrna_strand>TAATTTCTGCATCATTGAAGGACCCGAGACCGTTCAAGATTTTGTTGCG..................................................CCTGCTCCTAATGGAAGAG................................................................................................................GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA.......................................................................................................................................CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACTCCCTCATCTATTTAACAATGAAAGTGTTAGAAATTTCGTTAAGCGTATGTGTTCAAGATTTGATATAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300531" ref_strand="+" ref_description="SGN-E300531 [cLET-45-C13]">
      <seq>gagaccgttcaagattttggtcagatgcagtttcaagaaatccaggataacattaggagcaggcgcaacaaaatcttcctccttatggaagaggtacgtcggctaagaatacaacaaaggttaaagaactctaacactagaggtgagaccggtgaagatgaaaatgagatgccagatatcccatcaacgataccatttcttcctaacatgactccaaagacactaaagcagctttatcttacaagcttttcatttatagctgggattatggtcttcggtggattacttgccccagtacttgagctgaaattaggtctaggaggcacctcatacgaagattttatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggtgcagtgggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagagaaagtgcaaatattgctatggaagtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="20241" stop="22184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20541" g_stop="20633" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20746" g_stop="20862" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="210" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21247" g_stop="21333" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="297" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21469" g_stop="21545" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="374" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.477" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21756" g_stop="21883" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="502" r_length="128" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E300531" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20541" e_stop="20633"/>
          <exon e_start="20746" e_stop="20862"/>
          <exon e_start="21247" e_stop="21333"/>
          <exon e_start="21469" e_stop="21545"/>
          <exon e_start="21756" e_stop="21883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCGTTCAAGATTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAGGTGAGTTTTCTCAAGTTCTTAACATCCTCTAAGGGAACTTAAAGGAACAACTTATTATTTCCCAAGGATTGTACTCTCAAATAGCTTCTTAAAATCCGGATTAATTTTTCAGGTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATGGTAATTTGCCGAGTCCTCTTGTAAACAACTGAAGTATACTAGGGATTCAATTGGTCTTAGGAGGTTTTATACATCCAGTTATAAACAAAAATCGCTGTTTCGGGGAAGTCATTTTTTCATGTTTTGGTTTGTCAAAGTAAGCAACTTGACAAACATAGCGGATCGGAGATTCAAATTTATGAGTTCCTACAACGACCTCAAGTTAATATACAATACATGTGAAGCTTTGCAAGCTTCGTCACTGCTGTAACACTTTTGAGTTGAGATGTCTGGAAGCTTGTCTAACTGACCTATATCATATGAAACTGACGTATTCTGTTTTGTTTGTCGATCAGCATTTTGTGACACTTATTCTCTACTTGGTGCCTTTTTTGTTTGTATCAGACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG</genome_strand>
        <mrna_strand>GAGACCGTTCAAGATTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAG................................................................................................................GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA.......................................................................................................................................CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGTGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAGAAAGTGCAAATATTGCTATGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244663" ref_strand="+" ref_description="SGN-E244663 [cLED-38-K15]">
      <seq>ttttggtcagatgcagtttcaagaaatccaggataacattaggagcaggcgcaacaaaatcttcctccttatggaagaggtacgtcggctaagaatacaacaaaggttaaagaactctaacactagaggtgagaccggtgaagatgaaaatgagatgccagatatcccatcaacgataccatttcttcctaacatgactccaaagacactaaagcagctttatcttacaagcttttcatttatagctgggattatggtcttcggtggattacttgccccagtacttgagctgaaattaggtctaggaggcacctcatacgaagattttatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggggcagtgggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="20255" stop="22378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20555" g_stop="20633" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20746" g_stop="20862" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="196" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21247" g_stop="21333" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="283" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21469" g_stop="21545" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="360" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21756" g_stop="21883" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="488" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22028" g_stop="22078" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="539" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E244663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20555" e_stop="20633"/>
          <exon e_start="20746" e_stop="20862"/>
          <exon e_start="21247" e_stop="21333"/>
          <exon e_start="21469" e_stop="21545"/>
          <exon e_start="21756" e_stop="21883"/>
          <exon e_start="22028" e_stop="22078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAGGTGAGTTTTCTCAAGTTCTTAACATCCTCTAAGGGAACTTAAAGGAACAACTTATTATTTCCCAAGGATTGTACTCTCAAATAGCTTCTTAAAATCCGGATTAATTTTTCAGGTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATGGTAATTTGCCGAGTCCTCTTGTAAACAACTGAAGTATACTAGGGATTCAATTGGTCTTAGGAGGTTTTATACATCCAGTTATAAACAAAAATCGCTGTTTCGGGGAAGTCATTTTTTCATGTTTTGGTTTGTCAAAGTAAGCAACTTGACAAACATAGCGGATCGGAGATTCAAATTTATGAGTTCCTACAACGACCTCAAGTTAATATACAATACATGTGAAGCTTTGCAAGCTTCGTCACTGCTGTAACACTTTTGAGTTGAGATGTCTGGAAGCTTGTCTAACTGACCTATATCATATGAAACTGACGTATTCTGTTTTGTTTGTCGATCAGCATTTTGTGACACTTATTCTCTACTTGGTGCCTTTTTTGTTTGTATCAGACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTG</genome_strand>
        <mrna_strand>TTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAG................................................................................................................GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA.......................................................................................................................................CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551898" ref_strand="+" ref_description="SGN-E551898 [cTSB-2-D14]">
      <seq>aagaaatccaggataacattaggagcaggcgcaacaaaatcttcctccttatggaagaggtacgtcggctaagaatacaacaaaggttaaagaactctaacactagaggtgagaccggtgaagatgaaaatgagatgccagatatcccatcaacgataccatttcttcctaacatgactccaaagacactaaagcagctttatcttacaagcttttcatttatagctgggattatggtcttcggtggattacttgccccagtacttgagctgaaattaggtctaggaggcacctcatacgaagattttatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggggcagtgggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactgaaccaatttcagtgaatggttcttatcaatcgttgcgtgcaccaactcttaaaagatgtgcgaattgctccgggactggaaaggtaatgtgccctacatgtctgtgtactgggatggtgatggcaagtgaacatgaccttcgaatagatccatttgattaagtacaaattctcattttgtaacttatattcatacaaaaaataattggtcattttggttttgttataagcatagttattatatatagaatatcctttggttatgaanaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="20275" stop="23066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20575" g_stop="20633" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20746" g_stop="20862" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="176" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21247" g_stop="21333" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21469" g_stop="21545" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="340" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21756" g_stop="21883" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="468" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22028" g_stop="22161" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="602" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22162" i_stop="22575" i_length="414">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22576" g_stop="22770" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="797" r_length="195" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E551898" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20575" e_stop="20633"/>
          <exon e_start="20746" e_stop="20862"/>
          <exon e_start="21247" e_stop="21333"/>
          <exon e_start="21469" e_stop="21545"/>
          <exon e_start="21756" e_stop="21883"/>
          <exon e_start="22028" e_stop="22161"/>
          <exon e_start="22576" e_stop="22770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAGGTGAGTTTTCTCAAGTTCTTAACATCCTCTAAGGGAACTTAAAGGAACAACTTATTATTTCCCAAGGATTGTACTCTCAAATAGCTTCTTAAAATCCGGATTAATTTTTCAGGTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATGGTAATTTGCCGAGTCCTCTTGTAAACAACTGAAGTATACTAGGGATTCAATTGGTCTTAGGAGGTTTTATACATCCAGTTATAAACAAAAATCGCTGTTTCGGGGAAGTCATTTTTTCATGTTTTGGTTTGTCAAAGTAAGCAACTTGACAAACATAGCGGATCGGAGATTCAAATTTATGAGTTCCTACAACGACCTCAAGTTAATATACAATACATGTGAAGCTTTGCAAGCTTCGTCACTGCTGTAACACTTTTGAGTTGAGATGTCTGGAAGCTTGTCTAACTGACCTATATCATATGAAACTGACGTATTCTGTTTTGTTTGTCGATCAGCATTTTGTGACACTTATTCTCTACTTGGTGCCTTTTTTGTTTGTATCAGACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCGAAGAATAAAACAGTCATATTCGTCCACATTACATGGCCAAAATGAGGCCTTCCCTTGTAGTTAGAATAACATCCTCAACAACAACAAGGTTCGTTGAACCCCTTCTTCCTATCCTTGCTCGTTGCTACCTACGAAATGAGTTCCTCTAAGAAGATGCATGTCACAAATACGCGCATGCATCTCTCATCACATGTTACGATAACTTTCCCTTATCGTATACGTATATATGCTAATGTTTTTTGTTTCATATTATGATATTTTTTGGCTAGGTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACTCC</genome_strand>
        <mrna_strand>AAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAG................................................................................................................GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA.......................................................................................................................................CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAANAANAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572735" ref_strand="+" ref_description="SGN-E572735 [31936]">
      <seq>cacaggttaaagaactctaacactagaggtgagactggtgaagatgaaaatgagatgccagatatcccatcaacgataccgtttcttcctaacatgactccaaagacactgaagcagctttatctaacaagcttttcatttatagctgggattatggtcttcggtggattacttgcaccgatacttgagctgaaattaggtttaggaggcacctcatatgaagatttcatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggggcagtgggagtcatactcaagcctcatgctaataggaagctaaccaatgtagtccaaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacggctgttcagcaagcggtaaatgcctttatactgaaccgatttcagtgaatggttcttatcgaatcgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="20467" stop="22412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20767" g_stop="20862" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21247" g_stop="21333" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="183" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21469" g_stop="21545" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="260" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21756" g_stop="21883" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="392" r_length="132" r_score="0.922"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22028" g_stop="22114" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="481" r_length="89" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E572735" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20767" e_stop="20862"/>
          <exon e_start="21247" e_stop="21333"/>
          <exon e_start="21469" e_stop="21545"/>
          <exon e_start="21756" e_stop="21883"/>
          <exon e_start="22028" e_stop="22114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATGGTAATTTGCCGAGTCCTCTTGTAAACAACTGAAGTATACTAGGGATTCAATTGGTCTTAGGAGGTTTTATACATCCAGTTATAAACAAAAATCGCTGTTTCGGGGAAGTCATTTTTTCATGTTTTGGTTTGTCAAAGTAAGCAACTTGACAAACATAGCGGATCGGAGATTCAAATTTATGAGTTCCTACAACGACCTCAAGTTAATATACAATACATGTGAAGCTTTGCAAGCTTCGTCACTGCTGTAACACTTTTGAGTTGAGATGTCTGGAAGCTTGTCTAACTGACCTATATCATATGAAACTGACGTATTCTGTTTTGTTTGTCGATCAGCATTTTGTGACACTTATTCTCTACTTGGTGCCTTTTTTGTTTGTATCAGACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCAT-CTCAGCCCTCATGCTAATA-GAAGCTAAC-AATGTAGTCC-AACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCAC-GATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATC-AATCGTTGC</genome_strand>
        <mrna_strand>CACAGGTTAAAGAACTCTAACACTAGAGGTGAGACTGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCGTTTCTTCCTAACATG................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAAAGACACTGAAGCAGCTTTATCTAACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCACCGATA.......................................................................................................................................CTTGAGCTGAAATTAGGTTTAGGAGGCACCTCATATGAAGATTTCATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATACTCAAGCCTCATGCTAATAGGAAGCTAACCAATGTAGTCCAAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGGCTGTTCAGCAAGCGGTAAATGCCTTTATACTGAACCGATTTCAGTGAATGGTTCTTATCGAATCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270644" ref_strand="+" ref_description="SGN-E270644 [cLEM-6-K7]">
      <seq>tttcttcctaacatgactccaaagacactaaagcagctttatcttacaagcttttcatttatagctgggattatggtcttcggtggattacttgccccagtacttgagctgaaattaggtctaggaggcacctcatacgaagattttatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggggcagtgggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactgaaccaatttcagtgaatggttcttatcaatcgttgcgtgcaccaactcttaaaagatgtgcgaattgctccgggactggaaaggtatgaaacatgatcatctccctacttcatgcactcaacagtcatattatatcagttcaataagtagtaactttacaagaaaaaacaaatatctgtgtctgttacaatccgtcccatagtcgagcatctcaaaaatgtgtgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="20933" stop="22606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21247" g_stop="21333" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="102" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21469" g_stop="21545" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="179" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21756" g_stop="21883" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="307" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22028" g_stop="22306" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="586" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E270644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21247" e_stop="21333"/>
          <exon e_start="21469" e_stop="21545"/>
          <exon e_start="21756" e_stop="21883"/>
          <exon e_start="22028" e_stop="22306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG</genome_strand>
        <mrna_strand>ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA.......................................................................................................................................CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238878" ref_strand="+" ref_description="SGN-E238878 [cLEL-9-J22](-)">
      <seq>agtggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactgaaccaatttcagtgaatggttcttatcaatcgttgcgtgcaccaactcttaaaagatgtgcgaattgctccgggactggaaaggtaatgtgccctacatgtctgtgtactgggatggtgatggcaagtgaacatgaccttcgaatagatccatttgattaagtacaaattctcattttgtaacttatattcatacaaaaaataattggtcattttggttttgttataagcatagttattatatatagaatatcctttggttatgaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="21495" stop="23066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21795" g_stop="21883" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22028" g_stop="22161" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="222" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22162" i_stop="22575" i_length="414">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22576" g_stop="22759" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="406" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="423"/>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E238878" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21795" e_stop="21883"/>
          <exon e_start="22028" e_stop="22161"/>
          <exon e_start="22576" e_stop="22759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCGAAGAATAAAACAGTCATATTCGTCCACATTACATGGCCAAAATGAGGCCTTCCCTTGTAGTTAGAATAACATCCTCAACAACAACAAGGTTCGTTGAACCCCTTCTTCCTATCCTTGCTCGTTGCTACCTACGAAATGAGTTCCTCTAAGAAGATGCATGTCACAAATACGCGCATGCATCTCTCATCACATGTTACGATAACTTTCCCTTATCGTATACGTATATATGCTAATGTTTTTTGTTTCATATTATGATATTTTTTGGCTAGGTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAG</genome_strand>
        <mrna_strand>AGTG-GAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239377" ref_strand="+" ref_description="SGN-E239377 [cLEL-9-J22](-)">
      <seq>gcctctatactgaaccaatttcagtgaatggttcttatcaatagttgcgtgcaccaactcttaaaaaatgtgcaaattgccccgggactggaaaggtaatgtgccctacatgtctgtgtactgggatggtgatggccagtgaacatgaccttcgaatagatccatttgattaagtacaaattctcattttgtaacttatattcatacaaaaaataattggtcattttggctttgttataagcatagttattatatatagaatatcctttggttatcaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="21767" stop="23066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22067" g_stop="22161" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22162" i_stop="22575" i_length="414">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22576" g_stop="22759" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="279" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="280" polyA_stop="296"/>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E239377" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22067" e_stop="22161"/>
          <exon e_start="22576" e_stop="22759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCGAAGAATAAAACAGTCATATTCGTCCACATTACATGGCCAAAATGAGGCCTTCCCTTGTAGTTAGAATAACATCCTCAACAACAACAAGGTTCGTTGAACCCCTTCTTCCTATCCTTGCTCGTTGCTACCTACGAAATGAGTTCCTCTAAGAAGATGCATGTCACAAATACGCGCATGCATCTCTCATCACATGTTACGATAACTTTCCCTTATCGTATACGTATATATGCTAATGTTTTTTGTTTCATATTATGATATTTTTTGGCTAGGTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAG</genome_strand>
        <mrna_strand>GCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATAGTTGCGTGCACCAACTCTTAAAAAATGTGCAAATTGCCCCGGGACTGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCCAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGCTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327322" ref_strand="+" ref_description="SGN-E327322 [cTOC-19-F4]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgataactttcatttcacgttactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="23964" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24264" g_stop="24319" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24320" i_stop="24447" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24448" g_stop="24567" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="177" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="24666" i_length="99">
            <donor d_prob="0.008" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24667" g_stop="24680" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="192" r_length="15" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E327322" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24264" e_stop="24319"/>
          <exon e_start="24448" e_stop="24567"/>
          <exon e_start="24667" e_stop="24680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGAT-ACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAG-CACGTTACTGATTT</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATAACTTTCATT...................................................................................................TCACGTTACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399836" ref_strand="+" ref_description="SGN-E399836 [cSTC-2-N15]">
      <seq>tcaagctgctgagtatctctgtactttctcactaccaagctcaaccggaaccatgtcgaatagaaagaccagagagcctaaggaagagactgttacacttggaccagcaacgatggaaggtgaatcggtgttcggtgctgcacactttttgcatcaatcaatgatacattcattcacgctactgatttgcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="23965" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24265" g_stop="24319" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24320" i_stop="24447" i_length="128">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24448" g_stop="24567" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="174" r_length="119" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24568" i_stop="24666" i_length="99">
            <donor d_prob="0.008" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24667" g_stop="24687" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="195" r_length="21" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E399836" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24265" e_stop="24319"/>
          <exon e_start="24448" e_stop="24567"/>
          <exon e_start="24667" e_stop="24687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGA</genome_strand>
        <mrna_strand>TCAAGCTGCTGAGTATCTCTGTACTTTCTCACTACCAAGCTCAACCGGAACCATG................................................................................................................................TCGAATAGAAAGACCAGAGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGATGGAAGGTGAATCGGTGTTCGGTGCTGCACAC-TTTTTGCATCAATCAATGATACATTCATT...................................................................................................CACGCTACTGATTTGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337832" ref_strand="+" ref_description="SGN-E337832 [cTOE-14-A13]">
      <seq>tttgattaatttgaattgaaaaactgtatgttcgatgaaattgtttgtttgtagtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccatcaacgacggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="24094" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24394" g_stop="24567" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="24666" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24667" g_stop="24683" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="191" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E337832" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24394" e_stop="24567"/>
          <exon e_start="24667" e_stop="24683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTC</genome_strand>
        <mrna_strand>TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCATCAACGACGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445242" ref_strand="+" ref_description="SGN-E445242 [cSTA-44-N4]">
      <seq>gagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcgtcgttcaatgatacattcattcatgtcactgatttgtctggaagagaaactatggttcgcattactggtggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0140E16-s9ncK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0140E16.1" temp_strand="+" temp_description="C09SLf0140E16.1  AC234220.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0140E16 upload_account_name:spain (1 - 24788)">
        <position start="24153" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24453" g_stop="24567" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24568" i_stop="24666" i_length="99">
            <donor d_prob="0.008" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24667" g_stop="24712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="161" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0140E16.1" gen_strand="+" ref_id="SGN-E445242" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0140E16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24453" e_stop="24567"/>
          <exon e_start="24667" e_stop="24712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG</genome_strand>
        <mrna_strand>GAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCGTCGTTCAATGATACATTCATT...................................................................................................CATGTCACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10224" PGL_stop="9298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10224" e_stop="9298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10224" e_stop="9298" e_length="927"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10224" stop="9392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10219" stop="9326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="9527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="9830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="9830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="9447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10212" stop="9886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10212" stop="9934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10105" stop="9298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGAGAGAAGCTCTGATGGACAGTAACGGCGTCGTTAGCTTTCACCACCGGCGATCGCCGTCCTCCGATCGATTTCTCGGCGTATTCTCTCCACCACAGAGTGATAGTGCTATCGGCGATGCAGATGTATCCATCGCTGATGATGAGCTGAACGAAGATGAAGTTTTCTGGATAGGAGACTTCACTGAACCTAAGCGCCGCTCTACTTCTCCTTCTTCAATCAGTAGTCGGAAAACTTTCCTTCAGCCGGAGAAATTCGGTATTCTCGCTGCATTGCCTGAGGATCACCGGAAACTTAACCGTCCTGTTGTTTATCGGAAACCTTCGATAACTTCCTCACCTACTAGTACAAAACTGTTTCATTCACCGCCGGTTGCATCAGCGATGGCTTTTTCTCGAGGGTTTCCTACGATTCCCAAACCTCCATTGGATAGAGAACATAGCTATAACCGTAACTATTCACAAACTATGCCGGTGAGGAAGTTCCAACACTCAGTGCCAGTGAACGTGCCGATGATGCCGAAGAAGGCACCGAGAAGTGACCTTGCTGACGTAGAAATCGATGATGATGACGGCGATGATGAGATGCTTCCTCCGCATGAGATCGTTGCCAGAGGATCAGCTAGATCACTTAAAACCACGTTTTCGGTGCTTGAAGGCGTGGGAAGAACACTCAAAGGGAGAGATCTTTGTCGAGTTCGCAATGCTGTTTTCCGCCAAACAGGTTTTCTAGATTGAAACGATAAGGAACAGTTCAGTTAATTTTGATATATCTCTGTGAATTATACTTATTGTTAATCGATCTGGACTGAGGTTTTCCTCCAAAAACATTATAGCTGGACAGTGAATTTTTCTAGCCAACTTTCAGTCATGGAGTACATCATTAAATAATATTATACAATGGAGATAGTCCTATATGTTTTTTC</gDNA_template>
            <first_frame> E  E  R  S  S  D  G  Q  *  R  R  R  *  L  S  P  P  A  I  A  V  L  R  S  I  S  R  R  I  L  S  T  T  E  *  *  C  Y  R  R  C  R  C  I  H  R  *  *  *  A  E  R  R  *  S  F  L  D  R  R  L  H  *  T  *  A  P  L  Y  F  S  F  F  N  Q  *  S  E  N  F  P  S  A  G  E  I  R  Y  S  R  C  I  A  *  G  S  P  E  T  *  P  S  C  C  L  S  E  T  F  D  N  F  L  T  Y  *  Y  K  T  V  S  F  T  A  G  C  I  S  D  G  F  F  S  R  V  S  Y  D  S  Q  T  S  I  G  *  R  T  *  L  *  P  *  L  F  T  N  Y  A  G  E  E  V  P  T  L  S  A  S  E  R  A  D  D  A  E  E  G  T  E  K  *  P  C  *  R  R  N  R  *  *  *  R  R  *  *  D  A  S  S  A  *  D  R  C  Q  R  I  S  *  I  T  *  N  H  V  F  G  A  *  R  R  G  K  N  T  Q  R  E  R  S  L  S  S  S  Q  C  C  F  P  P  N  R  F  S  R  L  K  R  *  G  T  V  Q  L  I  L  I  Y  L  C  E  L  Y  L  L  L  I  D  L  D  *  G  F  P  P  K  T  L  *  L  D  S  E  F  F  *  P  T  F  S  H  G  V  H  H  *  I  I  L  Y  N  G  D  S  P  I  C  F  F </first_frame>
            <second_frame>  R  R  E  A  L  M  D  S  N  G  V  V  S  F  H  H  R  R  S  P  S  S  D  R  F  L  G  V  F  S  P  P  Q  S  D  S  A  I  G  D  A  D  V  S  I  A  D  D  E  L  N  E  D  E  V  F  W  I  G  D  F  T  E  P  K  R  R  S  T  S  P  S  S  I  S  S  R  K  T  F  L  Q  P  E  K  F  G  I  L  A  A  L  P  E  D  H  R  K  L  N  R  P  V  V  Y  R  K  P  S  I  T  S  S  P  T  S  T  K  L  F  H  S  P  P  V  A  S  A  M  A  F  S  R  G  F  P  T  I  P  K  P  P  L  D  R  E  H  S  Y  N  R  N  Y  S  Q  T  M  P  V  R  K  F  Q  H  S  V  P  V  N  V  P  M  M  P  K  K  A  P  R  S  D  L  A  D  V  E  I  D  D  D  D  G  D  D  E  M  L  P  P  H  E  I  V  A  R  G  S  A  R  S  L  K  T  T  F  S  V  L  E  G  V  G  R  T  L  K  G  R  D  L  C  R  V  R  N  A  V  F  R  Q  T  G  F  L  D  *  N  D  K  E  Q  F  S  *  F  *  Y  I  S  V  N  Y  T  Y  C  *  S  I  W  T  E  V  F  L  Q  K  H  Y  S  W  T  V  N  F  S  S  Q  L  S  V  M  E  Y  I  I  K  *  Y  Y  T  M  E  I  V  L  Y  V  F   </second_frame>
            <third_frame>   G  E  K  L  *  W  T  V  T  A  S  L  A  F  T  T  G  D  R  R  P  P  I  D  F  S  A  Y  S  L  H  H  R  V  I  V  L  S  A  M  Q  M  Y  P  S  L  M  M  S  *  T  K  M  K  F  S  G  *  E  T  S  L  N  L  S  A  A  L  L  L  L  L  Q  S  V  V  G  K  L  S  F  S  R  R  N  S  V  F  S  L  H  C  L  R  I  T  G  N  L  T  V  L  L  F  I  G  N  L  R  *  L  P  H  L  L  V  Q  N  C  F  I  H  R  R  L  H  Q  R  W  L  F  L  E  G  F  L  R  F  P  N  L  H  W  I  E  N  I  A  I  T  V  T  I  H  K  L  C  R  *  G  S  S  N  T  Q  C  Q  *  T  C  R  *  C  R  R  R  H  R  E  V  T  L  L  T  *  K  S  M  M  M  T  A  M  M  R  C  F  L  R  M  R  S  L  P  E  D  Q  L  D  H  L  K  P  R  F  R  C  L  K  A  W  E  E  H  S  K  G  E  I  F  V  E  F  A  M  L  F  S  A  K  Q  V  F  *  I  E  T  I  R  N  S  S  V  N  F  D  I  S  L  *  I  I  L  I  V  N  R  S  G  L  R  F  S  S  K  N  I  I  A  G  Q  *  I  F  L  A  N  F  Q  S  W  S  T  S  L  N  N  I  I  Q  W  R  *  S  Y  M  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10223" stop="9486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RREALMDSNGVVSFHHRRSPSSDRFLGVFSPPQSDSAIGDADVSIADDELNEDEVFWIGDFTEPKRRSTSPSSISSRKTFLQPEKFGILAALPEDHRKLNRPVVYRKPSITSSPTSTKLFHSPPVASAMAFSRGFPTIPKPPLDREHSYNRNYSQTMPVRKFQHSVPVNVPMMPKKAPRSDLADVEIDDDDGDDEMLPPHEIVARGSARSLKTTFSVLEGVGRTLKGRDLCRVRNAVFRQTGFLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15122" PGL_stop="17801"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15122" e_stop="15229"/>
            <exon e_start="15336" e_stop="15473"/>
            <exon e_start="17152" e_stop="17288"/>
            <exon e_start="17668" e_stop="17801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15122" e_stop="15229" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15230" i_stop="15335" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15336" e_stop="15473" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.812">
            <gDNA_intron_boundary i_start="15474" i_stop="17151" i_length="1678"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="17152" e_stop="17288" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.988">
            <gDNA_intron_boundary i_start="17289" i_stop="17667" i_length="379"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17668" e_stop="17801" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15122" stop="15229"/>
              <exon start="15336" stop="15473"/>
              <exon start="17152" stop="17288"/>
              <exon start="17668" stop="17785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15133" stop="15229"/>
              <exon start="15336" stop="15473"/>
              <exon start="17152" stop="17288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15162" stop="15229"/>
              <exon start="15336" stop="15473"/>
              <exon start="17152" stop="17288"/>
              <exon start="17668" stop="17787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15186" stop="15229"/>
              <exon start="15336" stop="15473"/>
              <exon start="17152" stop="17288"/>
              <exon start="17668" stop="17754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15473"/>
              <exon start="17152" stop="17288"/>
              <exon start="17668" stop="17757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15409" stop="15473"/>
              <exon start="17152" stop="17288"/>
              <exon start="17668" stop="17801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTCTTCCATTAAAACCCAAAGTCACGAGTAGACCTTTGCACAAACCGCAACCCATCGCCACCGTTCTCCGGTAGCAACTAATCGCCGAACAGCCATGAACACCATG : CAACGAAGTGGATCAGGTTCGTTACAGAGCCCTAGATCTCCATCTTCACAAGCGCCGTTTTTATCAGTATCAGTTACGGATCCAGCTAAAATGGGTAATGGAGTTCAAGCTTATATCTCCTACAAAGTCATCACTAAG : ACAAATTTGGCAGAGTACCAAGGGAATGAAAAAATTGTGATTCGACGTTATAGTGATTTTGTATGGTTACACGATCGGCTTTTTGAGAAATACAAGGAGTATTTTTATTCCTCCACTTCCAGAGAAAAGCACTGTAG : AAAAGTTCAGATTTAGTGCAGAATTTATTGAAATGAGGCGCCAAGCTCTGGATGTGTTTGTAAACAGAATAGCTTCACATCATGAACTTCGGCAAAGTGACGATTTGAGAATCTTCTTGCAGGCTGATGAACAG</gDNA_template>
            <first_frame> D  S  S  I  K  T  Q  S  H  E  *  T  F  A  Q  T  A  T  H  R  H  R  S  P  V  A  T  N  R  R  T  A  M  N  T  M  :  Q  R  S  G  S  G  S  L  Q  S  P  R  S  P  S  S  Q  A  P  F  L  S  V  S  V  T  D  P  A  K  M  G  N  G  V  Q  A  Y  I  S  Y  K  V  I  T  K  :  T  N  L  A  E  Y  Q  G  N  E  K  I  V  I  R  R  Y  S  D  F  V  W  L  H  D  R  L  F  E  K  Y  K  E  Y  F  Y  S  S  T  S  R  E  K  H  C  R :   K  V  Q  I  *  C  R  I  Y  *  N  E  A  P  S  S  G  C  V  C  K  Q  N  S  F  T  S  *  T  S  A  K  *  R  F  E  N  L  L  A  G  *  *  T  </first_frame>
            <second_frame>  T  L  P  L  K  P  K  V  T  S  R  P  L  H  K  P  Q  P  I  A  T  V  L  R  *  Q  L  I  A  E  Q  P  *  T  P  C :   N  E  V  D  Q  V  R  Y  R  A  L  D  L  H  L  H  K  R  R  F  Y  Q  Y  Q  L  R  I  Q  L  K  W  V  M  E  F  K  L  I  S  P  T  K  S  S  L  R :   Q  I  W  Q  S  T  K  G  M  K  K  L  *  F  D  V  I  V  I  L  Y  G  Y  T  I  G  F  L  R  N  T  R  S  I  F  I  P  P  L  P  E  K  S  T  V   : E  K  F  R  F  S  A  E  F  I  E  M  R  R  Q  A  L  D  V  F  V  N  R  I  A  S  H  H  E  L  R  Q  S  D  D  L  R  I  F  L  Q  A  D  E  Q </second_frame>
            <third_frame>   L  F  H  *  N  P  K  S  R  V  D  L  C  T  N  R  N  P  S  P  P  F  S  G  S  N  *  S  P  N  S  H  E  H  H   : A  T  K  W  I  R  F  V  T  E  P  *  I  S  I  F  T  S  A  V  F  I  S  I  S  Y  G  S  S  *  N  G  *  W  S  S  S  L  Y  L  L  Q  S  H  H  *   : D  K  F  G  R  V  P  R  E  *  K  N  C  D  S  T  L  *  *  F  C  M  V  T  R  S  A  F  *  E  I  Q  G  V  F  L  F  L  H  F  Q  R  K  A  L  *  :  K  S  S  D  L  V  Q  N  L  L  K  *  G  A  K  L  W  M  C  L  *  T  E  *  L  H  I  M  N  F  G  K  V  T  I  *  E  S  S  C  R  L  M  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15155" stop="15229"/>
                    <exon start="15336" stop="15473"/>
                    <exon start="17152" stop="17288"/>
                    <exon start="17668" stop="17683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFAQTATHRHRSPVATNRRTAMNTMQRSGSGSLQSPRSPSSQAPFLSVSVTDPAKMGNGVQAYISYKVITKTNLAEYQGNEKIVIRRYSDFVWLHDRLFEKYKEYFYSSTSREKHCRKVQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20516" PGL_stop="22839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20541" e_stop="20633"/>
            <exon e_start="20746" e_stop="20862"/>
            <exon e_start="21247" e_stop="21333"/>
            <exon e_start="21469" e_stop="21545"/>
            <exon e_start="21756" e_stop="21883"/>
            <exon e_start="22028" e_stop="22161"/>
            <exon e_start="22576" e_stop="22770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.477" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20541" e_stop="20633" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.973">
            <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20746" e_stop="20862" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.884">
            <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21247" e_stop="21333" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21469" e_stop="21545" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.477">
            <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21756" e_stop="21883" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22028" e_stop="22161" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="22162" i_stop="22575" i_length="414"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22576" e_stop="22770" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20541" stop="20633"/>
              <exon start="20746" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20555" stop="20633"/>
              <exon start="20746" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20575" stop="20633"/>
              <exon start="20746" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22161"/>
              <exon start="22576" stop="22770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20767" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21795" stop="21883"/>
              <exon start="22028" stop="22161"/>
              <exon start="22576" stop="22759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22067" stop="22161"/>
              <exon start="22576" stop="22759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACCGTTCAAGATTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAG : GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG : ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA : CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG : CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG : GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACTCC</gDNA_template>
            <first_frame> E  T  V  Q  D  F  G  Q  M  Q  F  Q  E  I  Q  D  N  I  R  S  R  R  N  K  I  F  L  L  M  E  E  :  V  R  R  L  R  I  Q  Q  R  L  K  N  S  N  T  R  G  E  T  G  E  D  E  N  E  M  P  D  I  P  S  T  I  P  F  L  P  N  M  :  T  P  K  T  L  K  Q  L  Y  L  T  S  F  S  F  I  A  G  I  M  V  F  G  G  L  L  A  P  V  :  L  E  L  K  L  G  L  G  G  T  S  Y  E  D  F  I  R  N  M  H  L  P  M  Q  L  S :   Q  V  D  P  I  V  A  S  F  S  G  G  A  V  G  V  I  S  A  L  M  L  I  E  A  N  N  V  V  Q  Q  E  K  K  K  C  K  Y  C  Y  G  S   : G  Y  L  A  C  A  R  C  S  A  S  G  K  C  L  Y  T  E  P  I  S  V  N  G  S  Y  Q  S  L  R  A  P  T  L  K  R  C  A  N  C  S  G  T  G  K  :  V  M  C  P  T  C  L  C  T  G  M  V  M  A  S  E  H  D  L  R  I  D  P  F  D  *  V  Q  I  L  I  L  *  L  I  F  I  Q  K  I  I  G  H  F  G  F  V  I  S  I  V  I  I  Y  R  I  S  F  G  Y  E  D  D  N  S </first_frame>
            <second_frame>  R  P  F  K  I  L  V  R  C  S  F  K  K  S  R  I  T  L  G  A  G  A  T  K  S  S  S  L  W  K  R :   Y  V  G  *  E  Y  N  K  G  *  R  T  L  T  L  E  V  R  P  V  K  M  K  M  R  C  Q  I  S  H  Q  R  Y  H  F  F  L  T  * :   L  Q  R  H  *  S  S  F  I  L  Q  A  F  H  L  *  L  G  L  W  S  S  V  D  Y  L  P  Q  Y :   L  S  *  N  *  V  *  E  A  P  H  T  K  I  L  Y  V  T  C  I  C  L  C  N  *   : A  R  S  T  P  *  W  R  P  F  Q  A  G  Q  W  E  S  S  Q  P  S  C  *  *  K  L  T  M  *  S  N  K  R  R  K  S  A  N  I  A  M  E  V  :  G  T  W  H  V  H  D  V  Q  Q  A  V  N  A  S  I  L  N  Q  F  Q  *  M  V  L  I  N  R  C  V  H  Q  L  L  K  D  V  R  I  A  P  G  L  E  R :   *  C  A  L  H  V  C  V  L  G  W  *  W  Q  V  N  M  T  F  E  *  I  H  L  I  K  Y  K  F  S  F  C  N  L  Y  S  Y  K  K  *  L  V  I  L  V  L  L  *  A  *  L  L  Y  I  E  Y  P  L  V  M  K  M  I  T   </second_frame>
            <third_frame>   D  R  S  R  F  W  S  D  A  V  S  R  N  P  G  *  H  *  E  Q  A  Q  Q  N  L  P  P  Y  G  R   : G  T  S  A  K  N  T  T  K  V  K  E  L  *  H  *  R  *  D  R  *  R  *  K  *  D  A  R  Y  P  I  N  D  T  I  S  S  *  H   : D  S  K  D  T  K  A  A  L  S  Y  K  L  F  I  Y  S  W  D  Y  G  L  R  W  I  T  C  P  S   : T  *  A  E  I  R  S  R  R  H  L  I  R  R  F  Y  T  *  H  A  F  A  Y  A  I  E  :  P  G  R  P  H  S  G  V  L  F  R  R  G  S  G  S  H  L  S  P  H  A  N  R  S  *  Q  C  S  P  T  R  E  E  K  V  Q  I  L  L  W  K  W :   V  L  G  M  C  T  M  F  S  K  R  *  M  P  L  Y  *  T  N  F  S  E  W  F  L  S  I  V  A  C  T  N  S  *  K  M  C  E  L  L  R  D  W  K   : G  N  V  P  Y  M  S  V  Y  W  D  G  D  G  K  *  T  *  P  S  N  R  S  I  *  L  S  T  N  S  H  F  V  T  Y  I  H  T  K  N  N  W  S  F  W  F  C  Y  K  H  S  Y  Y  I  *  N  I  L  W  L  *  R  *  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20541" stop="20633"/>
                    <exon start="20746" stop="20862"/>
                    <exon start="21247" stop="21333"/>
                    <exon start="21469" stop="21545"/>
                    <exon start="21756" stop="21883"/>
                    <exon start="22028" stop="22161"/>
                    <exon start="22576" stop="22653"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVQDFGQMQFQEIQDNIRSRRNKIFLLMEEVRRLRIQQRLKNSNTRGETGEDENEMPDIPSTIPFLPNMTPKTLKQLYLTSFSFIAGIMVFGGLLAPVLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVVQQEKKKCKYCYGSGYLACARCSASGKCLYTEPISVNGSYQSLRAPTLKRCANCSGTGKVMCPTCLCTGMVMASEHDLRIDPFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20541" e_stop="20633"/>
            <exon e_start="20746" e_stop="20862"/>
            <exon e_start="21247" e_stop="21333"/>
            <exon e_start="21469" e_stop="21545"/>
            <exon e_start="21756" e_stop="21883"/>
            <exon e_start="22028" e_stop="22306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.477" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20541" e_stop="20633" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.973">
            <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20746" e_stop="20862" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.884">
            <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21247" e_stop="21333" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21469" e_stop="21545" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.477">
            <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21756" e_stop="21883" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22028" e_stop="22306" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20541" stop="20633"/>
              <exon start="20746" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20555" stop="20633"/>
              <exon start="20746" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20767" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACCGTTCAAGATTTTGGTCAGATGCAGTTTCAAGAAATCCAGGATAACATTAGGAGCAGGCGCAACAAAATCTTCCTCCTTATGGAAGAG : GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG : ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA : CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG : CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG</gDNA_template>
            <first_frame> E  T  V  Q  D  F  G  Q  M  Q  F  Q  E  I  Q  D  N  I  R  S  R  R  N  K  I  F  L  L  M  E  E  :  V  R  R  L  R  I  Q  Q  R  L  K  N  S  N  T  R  G  E  T  G  E  D  E  N  E  M  P  D  I  P  S  T  I  P  F  L  P  N  M  :  T  P  K  T  L  K  Q  L  Y  L  T  S  F  S  F  I  A  G  I  M  V  F  G  G  L  L  A  P  V  :  L  E  L  K  L  G  L  G  G  T  S  Y  E  D  F  I  R  N  M  H  L  P  M  Q  L  S :   Q  V  D  P  I  V  A  S  F  S  G  G  A  V  G  V  I  S  A  L  M  L  I  E  A  N  N  V  V  Q  Q  E  K  K  K  C  K  Y  C  Y  G  S   : G  Y  L  A  C  A  R  C  S  A  S  G  K  C  L  Y  T  E  P  I  S  V  N  G  S  Y  Q  S  L  R  A  P  T  L  K  R  C  A  N  C  S  G  T  G  K  V  *  N  M  I  I  S  L  L  H  A  L  N  S  H  I  I  S  V  Q  *  V  V  T  L  Q  E  K  T  N  I  C  V  C  Y  N  P  S  H  S  R  A  S  Q  K  C  V  T  </first_frame>
            <second_frame>  R  P  F  K  I  L  V  R  C  S  F  K  K  S  R  I  T  L  G  A  G  A  T  K  S  S  S  L  W  K  R :   Y  V  G  *  E  Y  N  K  G  *  R  T  L  T  L  E  V  R  P  V  K  M  K  M  R  C  Q  I  S  H  Q  R  Y  H  F  F  L  T  * :   L  Q  R  H  *  S  S  F  I  L  Q  A  F  H  L  *  L  G  L  W  S  S  V  D  Y  L  P  Q  Y :   L  S  *  N  *  V  *  E  A  P  H  T  K  I  L  Y  V  T  C  I  C  L  C  N  *   : A  R  S  T  P  *  W  R  P  F  Q  A  G  Q  W  E  S  S  Q  P  S  C  *  *  K  L  T  M  *  S  N  K  R  R  K  S  A  N  I  A  M  E  V  :  G  T  W  H  V  H  D  V  Q  Q  A  V  N  A  S  I  L  N  Q  F  Q  *  M  V  L  I  N  R  C  V  H  Q  L  L  K  D  V  R  I  A  P  G  L  E  R  Y  E  T  *  S  S  P  Y  F  M  H  S  T  V  I  L  Y  Q  F  N  K  *  *  L  Y  K  K  K  Q  I  S  V  S  V  T  I  R  P  I  V  E  H  L  K  N  V  *  P </second_frame>
            <third_frame>   D  R  S  R  F  W  S  D  A  V  S  R  N  P  G  *  H  *  E  Q  A  Q  Q  N  L  P  P  Y  G  R   : G  T  S  A  K  N  T  T  K  V  K  E  L  *  H  *  R  *  D  R  *  R  *  K  *  D  A  R  Y  P  I  N  D  T  I  S  S  *  H   : D  S  K  D  T  K  A  A  L  S  Y  K  L  F  I  Y  S  W  D  Y  G  L  R  W  I  T  C  P  S   : T  *  A  E  I  R  S  R  R  H  L  I  R  R  F  Y  T  *  H  A  F  A  Y  A  I  E  :  P  G  R  P  H  S  G  V  L  F  R  R  G  S  G  S  H  L  S  P  H  A  N  R  S  *  Q  C  S  P  T  R  E  E  K  V  Q  I  L  L  W  K  W :   V  L  G  M  C  T  M  F  S  K  R  *  M  P  L  Y  *  T  N  F  S  E  W  F  L  S  I  V  A  C  T  N  S  *  K  M  C  E  L  L  R  D  W  K  G  M  K  H  D  H  L  P  T  S  C  T  Q  Q  S  Y  Y  I  S  S  I  S  S  N  F  T  R  K  N  K  Y  L  C  L  L  Q  S  V  P  *  S  S  I  S  K  M  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20541" stop="20633"/>
                    <exon start="20746" stop="20862"/>
                    <exon start="21247" stop="21333"/>
                    <exon start="21469" stop="21545"/>
                    <exon start="21756" stop="21883"/>
                    <exon start="22028" stop="22167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVQDFGQMQFQEIQDNIRSRRNKIFLLMEEVRRLRIQQRLKNSNTRGETGEDENEMPDIPSTIPFLPNMTPKTLKQLYLTSFSFIAGIMVFGGLLAPVLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVVQQEKKKCKYCYGSGYLACARCSASGKCLYTEPISVNGSYQSLRAPTLKRCANCSGTGKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20516" e_stop="20564"/>
            <exon e_start="20615" e_stop="20633"/>
            <exon e_start="20746" e_stop="20862"/>
            <exon e_start="21247" e_stop="21333"/>
            <exon e_start="21469" e_stop="21545"/>
            <exon e_start="21756" e_stop="21883"/>
            <exon e_start="22028" e_stop="22161"/>
            <exon e_start="22576" e_stop="22839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.939"/>
          <exon-intron don_prob="0.991" acc_prob="0.973" e_score="0.842"/>
          <exon-intron don_prob="0.960" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.477" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="20516" e_stop="20564" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20565" i_stop="20614" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.842">
            <gDNA_exon_boundary e_start="20615" e_stop="20633" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.973">
            <gDNA_intron_boundary i_start="20634" i_stop="20745" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20746" e_stop="20862" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.884">
            <gDNA_intron_boundary i_start="20863" i_stop="21246" i_length="384"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21247" e_stop="21333" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21334" i_stop="21468" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21469" e_stop="21545" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.477">
            <gDNA_intron_boundary i_start="21546" i_stop="21755" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21756" e_stop="21883" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="21884" i_stop="22027" i_length="144"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22028" e_stop="22161" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="22162" i_stop="22575" i_length="414"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="22576" e_stop="22839" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20516" stop="20564"/>
              <exon start="20615" stop="20633"/>
              <exon start="20746" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22161"/>
              <exon start="22576" stop="22839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20767" stop="20862"/>
              <exon start="21247" stop="21333"/>
              <exon start="21469" stop="21545"/>
              <exon start="21756" stop="21883"/>
              <exon start="22028" stop="22114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21795" stop="21883"/>
              <exon start="22028" stop="22161"/>
              <exon start="22576" stop="22759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22067" stop="22161"/>
              <exon start="22576" stop="22759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTCTGCATCATTGAAGGACCCGAGACCGTTCAAGATTTTGGTCAG : CTTCCTCCTTATGGAAGAG : GTACGTCGGCTAAGAATACAACAAAGGTTAAAGAACTCTAACACTAGAGGTGAGACCGGTGAAGATGAAAATGAGATGCCAGATATCCCATCAACGATACCATTTCTTCCTAACATG : ACTCCAAAGACACTAAAGCAGCTTTATCTTACAAGCTTTTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA : CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG : CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG : GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACTCCTCATCTATTTAACAATGAAGGTGTTAGAAATTTCGTTAAGCGTATGTGTTCAAGATTTGATATAAATGT</gDNA_template>
            <first_frame> *  F  L  H  H  *  R  T  R  D  R  S  R  F  W  S   : A  S  S  L  W  K  R :   Y  V  G  *  E  Y  N  K  G  *  R  T  L  T  L  E  V  R  P  V  K  M  K  M  R  C  Q  I  S  H  Q  R  Y  H  F  F  L  T  * :   L  Q  R  H  *  S  S  F  I  L  Q  A  F  H  L  *  L  G  L  W  S  S  V  D  Y  L  P  Q  Y :   L  S  *  N  *  V  *  E  A  P  H  T  K  I  L  Y  V  T  C  I  C  L  C  N  *   : A  R  S  T  P  *  W  R  P  F  Q  A  G  Q  W  E  S  S  Q  P  S  C  *  *  K  L  T  M  *  S  N  K  R  R  K  S  A  N  I  A  M  E  V  :  G  T  W  H  V  H  D  V  Q  Q  A  V  N  A  S  I  L  N  Q  F  Q  *  M  V  L  I  N  R  C  V  H  Q  L  L  K  D  V  R  I  A  P  G  L  E  R :   *  C  A  L  H  V  C  V  L  G  W  *  W  Q  V  N  M  T  F  E  *  I  H  L  I  K  Y  K  F  S  F  C  N  L  Y  S  Y  K  K  *  L  V  I  L  V  L  L  *  A  *  L  L  Y  I  E  Y  P  L  V  M  K  M  I  T  P  H  L  F  N  N  E  G  V  R  N  F  V  K  R  M  C  S  R  F  D  I  N   </first_frame>
            <second_frame>  N  F  C  I  I  E  G  P  E  T  V  Q  D  F  G  Q  :  L  P  P  Y  G  R   : G  T  S  A  K  N  T  T  K  V  K  E  L  *  H  *  R  *  D  R  *  R  *  K  *  D  A  R  Y  P  I  N  D  T  I  S  S  *  H   : D  S  K  D  T  K  A  A  L  S  Y  K  L  F  I  Y  S  W  D  Y  G  L  R  W  I  T  C  P  S   : T  *  A  E  I  R  S  R  R  H  L  I  R  R  F  Y  T  *  H  A  F  A  Y  A  I  E  :  P  G  R  P  H  S  G  V  L  F  R  R  G  S  G  S  H  L  S  P  H  A  N  R  S  *  Q  C  S  P  T  R  E  E  K  V  Q  I  L  L  W  K  W :   V  L  G  M  C  T  M  F  S  K  R  *  M  P  L  Y  *  T  N  F  S  E  W  F  L  S  I  V  A  C  T  N  S  *  K  M  C  E  L  L  R  D  W  K   : G  N  V  P  Y  M  S  V  Y  W  D  G  D  G  K  *  T  *  P  S  N  R  S  I  *  L  S  T  N  S  H  F  V  T  Y  I  H  T  K  N  N  W  S  F  W  F  C  Y  K  H  S  Y  Y  I  *  N  I  L  W  L  *  R  *  *  L  L  I  Y  L  T  M  K  V  L  E  I  S  L  S  V  C  V  Q  D  L  I  *  M  </second_frame>
            <third_frame>   I  S  A  S  L  K  D  P  R  P  F  K  I  L  V  S :   F  L  L  M  E  E  :  V  R  R  L  R  I  Q  Q  R  L  K  N  S  N  T  R  G  E  T  G  E  D  E  N  E  M  P  D  I  P  S  T  I  P  F  L  P  N  M  :  T  P  K  T  L  K  Q  L  Y  L  T  S  F  S  F  I  A  G  I  M  V  F  G  G  L  L  A  P  V  :  L  E  L  K  L  G  L  G  G  T  S  Y  E  D  F  I  R  N  M  H  L  P  M  Q  L  S :   Q  V  D  P  I  V  A  S  F  S  G  G  A  V  G  V  I  S  A  L  M  L  I  E  A  N  N  V  V  Q  Q  E  K  K  K  C  K  Y  C  Y  G  S   : G  Y  L  A  C  A  R  C  S  A  S  G  K  C  L  Y  T  E  P  I  S  V  N  G  S  Y  Q  S  L  R  A  P  T  L  K  R  C  A  N  C  S  G  T  G  K  :  V  M  C  P  T  C  L  C  T  G  M  V  M  A  S  E  H  D  L  R  I  D  P  F  D  *  V  Q  I  L  I  L  *  L  I  F  I  Q  K  I  I  G  H  F  G  F  V  I  S  I  V  I  I  Y  R  I  S  F  G  Y  E  D  D  N  S  S  S  I  *  Q  *  R  C  *  K  F  R  *  A  Y  V  F  K  I  *  Y  K  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20518" stop="20564"/>
                    <exon start="20615" stop="20633"/>
                    <exon start="20746" stop="20862"/>
                    <exon start="21247" stop="21333"/>
                    <exon start="21469" stop="21545"/>
                    <exon start="21756" stop="21883"/>
                    <exon start="22028" stop="22161"/>
                    <exon start="22576" stop="22653"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISASLKDPRPFKILVSFLLMEEVRRLRIQQRLKNSNTRGETGEDENEMPDIPSTIPFLPNMTPKTLKQLYLTSFSFIAGIMVFGGLLAPVLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVVQQEKKKCKYCYGSGYLACARCSASGKCLYTEPISVNGSYQSLRAPTLKRCANCSGTGKVMCPTCLCTGMVMASEHDLRIDPFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24264" PGL_stop="24712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24264" e_stop="24319"/>
            <exon e_start="24448" e_stop="24567"/>
            <exon e_start="24667" e_stop="24712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="0.991"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24264" e_stop="24319" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24320" i_stop="24447" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="24448" e_stop="24567" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="24568" i_stop="24666" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="24667" e_stop="24712" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24264" stop="24319"/>
              <exon start="24448" stop="24567"/>
              <exon start="24667" stop="24680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24265" stop="24319"/>
              <exon start="24448" stop="24567"/>
              <exon start="24667" stop="24687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24453" stop="24567"/>
              <exon start="24667" stop="24712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG : TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG</gDNA_template>
            <first_frame> F  K  L  L  S  I  S  E  F  S  H  Y  Q  A  Q  L  K  P  C :   R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L </first_frame>
            <second_frame>  S  S  C  *  V  S  L  N  F  L  T  I  K  L  S  *  S  H   : V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y   </second_frame>
            <third_frame>   Q  A  A  E  Y  L  *  I  F  S  L  S  S  S  A  E  A  M  :  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24264" stop="24319"/>
                    <exon start="24448" stop="24567"/>
                    <exon start="24667" stop="24712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLLSISEFSHYQAQLKPCRGERPGSLRKRLLHLDQQRGKVNWCSVLHTFLHRSMIHSFTLLICLEEKLWFALL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24287" stop="24319"/>
                    <exon start="24448" stop="24567"/>
                    <exon start="24667" stop="24711"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSLSSSAEAMSRRKTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24394" e_stop="24567"/>
            <exon e_start="24667" e_stop="24712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="24394" e_stop="24567" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="24568" i_stop="24666" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24667" e_stop="24712" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24394" stop="24567"/>
              <exon start="24667" stop="24683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24453" stop="24567"/>
              <exon start="24667" stop="24712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG</gDNA_template>
            <first_frame> F  D  *  F  E  L  K  N  C  M  F  D  E  I  V  C  L  *  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T  </first_frame>
            <second_frame>  L  I  N  L  N  *  K  T  V  C  S  M  K  L  F  V  C  S  R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L </second_frame>
            <third_frame>   *  L  I  *  I  E  K  L  Y  V  R  *  N  C  L  F  V  V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0140E16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24413" stop="24567"/>
                    <exon start="24667" stop="24712"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTVCSMKLFVCSRGERPGSLRKRLLHLDQQRGKVNWCSVLHTFLHRSMIHSFTLLICLEEKLWFALL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 61 chains have been computed
$ 
$ memory statistics:
$ 54280 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 2010 bytes was the average size of a spliced alignment
$ 10152 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2538 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 66 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:20:23
-->
