<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 11:36:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2310" ref_strand="+" ref_description="SGN-M2310 T1840 [cos_markers]">
      <seq>ctaaagtagtctaccctttcagctgtacgacgcacttccacctccggcgaagtcgaaatatagctgccaaggattacagagaacacagtgtgatacttcctgagagataaaaatgttgtttttctcatacttcaaggatctggtgggcagggaagtgactgtcgaactgaagaacgatttggctattcgaggaacactacattcagttgatcagtatctcaacattaagcttgaaaacactagggttgttgatgaggacaagtatccccacatgaggtccgtgaggaactgcttcatcagaggatcggtggtcagatacgtgcagttacctcctgatggagttgacattgaactgcttcatgatgctacgaggagagaagctcggggtggctgaattctagagttcgaaattggtctgttcacatttcagtggataagtcagcagcagtatactgatttttcttactggatgcattttgcgcgtagaggttttcttcatcatcttaaaatttagtatgcagatgttatgaatgcccgtaatgtgaaaattgttgatatgatatctgtcttttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40899" stop="35212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40599" g_stop="40541" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39270" g_stop="39215" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="115" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38997" g_stop="38839" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="274" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35823" g_stop="35511" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="587" r_length="313" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-M2310" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40599" e_stop="40541"/>
          <exon e_start="39270" e_stop="39215"/>
          <exon e_start="38997" e_stop="38839"/>
          <exon e_start="35823" e_stop="35511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTGCGACTGTTCTGCGACTTTTTTTCAATTTTTGGTTGCTGCCAGTCTGCCACTGCTTGTAAGTTCTCTTCTTCTTCTTCTTCTCTTCTTCTCTGCGTGGCTGCTGCGTCTGATCCTTTTGTGATTTAATTATGTTTTTGCTTTATATGTTATGACTTATGAGGATTCTTGACTATCTATTTACTTTTAATCTAATAATATATTACCTCTATTCAGTTATTTAATATTTTTTTTATTTTTATACTATATATGCTTTACTTAAAAAAAGCTCGCGCTTCGCTTCTGTGAAGCGAGCCCTCGTCGCTTTTTTCCGCTTCTTTCTTCCCAAAACACTGGTTGGGGGCGAGTTCGAGGTGGTAAGGGGGTTAAGGGAGATGATGGGTAGAGAGTAGGGTCTCGGAGTATAGGGATGTTGACGAGGAAATCCATAGAGCTTTTGAGGATTCTCGAGAAGTGGAGGGTAACTTGTGCATGCTTTGATATCTGCATATCTCACCTCCAAATCCCTCATATATTATGAGCTTTAATAATATCTCACAGTTTTTTTTGAAGCAGATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATGGTACTGCTACCTGATCCCTCTTTCTTAATGCTGTAGCCTGTATGTTCCTCTTTATACACGCCTAATTTGTATATAATTGGTGTCTGCTTTGTTTTTTTCGATTGGTCTTGAATAGAAAGTTTATTTACTGATCACTTCTGATTTGAGTTTTTTTCTCATGAATTTGTTTGGTCTATGTTCTAACTTGGTTTTCCCCCTGGCCTTCTGTGTTTTCCAGTTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATGGTAATTCCTCATTCTTTCTCTTGTATCTTTGTTCTTCGTATTTTCTGTTGTTGGCTTTATCTGTGAAAATATGGTTTATTACCTATATTTAGTTTGAAGATGCATTGCATCTTGCCTCTCTTTCACCTTCTCTTTTTATGTGTATACGATCTGTTGAAAACCTCTGTTTTTGGCTCTTCCTTTCTCAATTCAAGAATTCTTGAATTAGTTGTTTATGCTTTTGTAGTATGCAATAAAACAAGTGGATATTTTCTCTTCCATAGTACTCCGGAGTTGTGAAGCCGATAGTTTTGCTGGAAACTACTAATGTTGATTGTATATGTGAATCGAGAAGGTCAATTTGATGTATTAACTTCTGTGTTTATATGATTCTGGCAACTACTGCTCACTGTGATATGGGATCCTTAGTCTATATGGGGATGAGGTTTTCCTATCACTATGACTATGATTATTTGCGGCTTTCACCTAGAAATGTTTAAGCTCAGTGTTCTTTCATAGTTTTTGTTAGCTACGCTATGATCTGTTCACCTTTCTGTTGAATGAAGTACTAATGCTATGTAAGGAGGTCTGCCTTTACAGTCTTTGATCCTTTGGAAACTGATAATTTGTTTATTACAAGGCTAAGAAGTTGTAAGTTTGGGAATTAAATATGACTGTAGCGGTGCATTGCTGCAGAGGATCTAAAGCTTACCTTAAATAGCAGATTATTAGCATGTCCTGACCTGATAGTTGCTCATAAGTCGAGACCCTGTACTGAACCTTTGCTCTAATGCATGTGGTAGAATGAAATATGATTGTCTATGATAGCATGTGTGGAGGAATAACTCCAATAAAAATACTTGGACTTTGGAAGTCTTAGAAGGCCCATGACAAGATCTCGAATAAGAAACTTCAAAAACAAGCTCATTGTTTTTAATTGTAAAGACGAAGTGCCTAGTATTGGAAGAAGAGCTCAAGCCAAGAAAAATCTTTTGTCTTAGTGTTATAGCTTTTTTATTGGCTGAATTGAAGTCCAAGATGAGGTAGGATATGGGGTTCAAGAACCAGCCGTTGAAGGAGGTCCATATCATTTTAATTTAGGAAAAATTTAGCCACCTAAATTGTGCCAAACTTGCATCCCATGAATCTCCCACTTAGGCCACATTGTAGCCAAAATGACCCATTAGGTGTGCAAATCGATAGGAGAGTTGCTGCTCAAGTTGCTTGCAAGTTGTCTTCAAGGTTCTAAGAGTTTCCTTAATTTTAGGCACTAATTAGGGGAGCCTAGCACATGTCTCCCTTGATTTTAGGAATTACTCGAACCTTCATATTTTAGTGGGAAAATAACTAGGATAAAATATGAAATCTTTGACTAATCCCTAAAAATAGGGAAACCATGTGTTGGGCTACCTTAATTACGTAGAACCTACAATTAAAGAACATCTTGAAGATAACTTGCAAGCAACTTAAGCAACAACTCTCCTATCAATTTGTACACCTGTGTGATCCTTCTTGGATAGCAAGGAAGCTCATTTTAAGGGCTAAAATGTGCCCCAAGTGGGAGCTTTGCTAGGTGCATGTTTGGCACAATCCAGGTGCCTAAATTGGTCCAAAGTGCACTGGTTTGGACCTCCATAAAAGGCATGTTTTTCATCTTTGGCTTCAATTTGGCCCACAAAAATAGCTAGAACACTTGTGCAAAAGATCCTCTTGGCTTGAACTCTTCTCCCAAAACTAGACACTTCTTTCTTTGCAATTGAAGCCCAATTAGTTTCTTTTTGAAGTTTCTTATTTGAGATCTTGTCATAGGCCTTTTAAGAGCTTCATCAAAGTTCTTTATTGTATTTATGCTTCCGTGGCTGCTATCAGCCTTCCTCTAGATACACTACCACATGTTTTTATGGAACTCTTTGATGAAATTCTTTTGTTGTTTCAACAGGTTGAATTTGTTGTGTAGTTGCTGCCTTTTTGGTCTCACCACTTTGAACTAAAACTTATGTGATTGTGTTAATTTCCAGCATGTCACAATTCCAGTCTTATTGTCTAGGACTTCTTTTCTATCTGGTTTTCTAGAAGTACGAATTATAAATGGAGCTACAATCTCTGTCAGCCCTTATACTTTGACTAGATTCACAAATTGGAACGAGAAGCGACTATATCTAGATGATGTCAGAGAACGCAATTGGGCTTTGGCTGATTAAGCCTCACTCGCCCTGGCAAGCAAAGTCAATGGTGAACTTCATATTCCCCCTTTCACCTTTCTACTCTTTTCCCACTAAGTTGGATTCTCTCTCCTTTTGTCTTCGTGCATCGTTTTTCCTTTTCATTCACTCACCAGCCTCACCCGCTTCTGATTTAATAAGAACAGAAGTTCACCTGTTTCTCATGTCCCATGGGATGTGGTGGTACACACCCACTTCCTTGTAGTCTGTAGAGCTGGGAAAACAGATCTAGCTAGAGCTTCCACGTGATAAATTTCATAGATCTGAATTTACAAACATTAAATGAAAGAAGATGTATCATAAGAAAATGATGGTTTCTTTCCGTTCCTTGTATTTTATATGAGAAGTTATATAGACATCAACCATTCCCTATACACACTATCCCTATTCTTTTGAATATCCGTGATTCCGGTAGCAACCTTCTTGCATTGATCAATTTTTCCGAAAGTGTGCAAGAGTATGAATGATATTGAAACTATATTCCAAAGTAGAATCTACTAGTAAGTAGCTGCATGTAGTTATTGACCTAATAAATCCGACCTGACAGCTTAAAATTTGCCTTTATGCAACTAGTGATATGTGTGTTGACTGCTGTATCACGATGTACATGTACACTTGCGACTTACGAGCCTATGAAAACGAAAATGGAAGTTGAGAAAAGGAGTGAGAAACATGGATATGTAGTATGTTCCCCTTGTCGTTTCCTCCCCACTGCCATCACCCCTTCTGTTTCCCCCTCTATTATTTATGAATATTAGTACTTCTCTGATCAGAATGCTAATACATACGTCCTATGTTTCTTTTATGGCAATAGAGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGACCAAATTAAGAAT</genome_strand>
        <mrna_strand>CTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATG.........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8173" ref_strand="+" ref_description="SGN-M8173 C2_At4g02920 [cosii_markers]">
      <seq>tgcaccacaaatctaagaagaatccaaaaacatagaaagttgaaagctttaattttgtcaagattcaagaatccaaccaaaaagatgtaacccctaatttctgaagggccattaagttttgtaaaccaccaaattgcaataaaatctagggaacttaaggtgaatagcaggataagcccctgatgctgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattgagatgaaggacatactttcaattatctccgagttctacttctcaaaggactcaatgaaatgcacaaagcatgcaatggtggttccgtactttgacaggaagacatgcaagacaaagtccaaaggtgaaagttctgctcagaaacttgacgtgaatgcatcatctctacggagtcctcagaaaactaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51777" stop="57369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52077" g_stop="52420" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="525" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54651" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="973" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54652" i_stop="56324" i_length="1673">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56325" g_stop="56399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="974" r_stop="1048" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56400" i_stop="57050" i_length="651">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57051" g_stop="57069" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1049" r_stop="1067" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-M8173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1067</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52077" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54651"/>
          <exon e_start="56325" e_stop="56399"/>
          <exon e_start="57051" e_stop="57069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCACAAATCTAAGAAGAATCCAAAAACATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAGGTAGCAATAATTTCTTTGCTTGAATTCTGCTCTTTTAAGTTTTTGTTGAGTAGATGTGACAAGTGTTTTCTTGTTCATGTGGTTTATCTTATTGAAAATAAAAGCTTTTCTCTTCTGTATTGATTCTCCTCTGTGAACAGATGTAGCCCATAAAAGCTTTCTTTCTGGCTTGCAGCACCATAGGTTTGATGTGATTCGAATATAGAGATATCATAGCTAAATTATTATTTTTCTTTCTTGAATAATTTGGTACCTCAGTTGAAGTGAGTTAGTGCCTTGTCTCTCAGATGCTACTAGAAGGTGACTAAATGTGTGGGCTAGATATAAGAGCAACATGATAACGGTTATCACTGATGAGGACTAGATTGAGAAGCGATTAAATAGTTAAAATGAAGCCTCTACTATTATGAACAGGTAAATGCTTGGTATAGTTGCATATTATCTGAAGGTATAAGTACAACGATGCAATCAAGACCTAAGTAGCCAGATGGGCATGGGAAAAGAGGATGCATAGACAGCGATTTTCCAAAGGAGTGTAGAAAAATCCTAGTTCGGAAGTACAAAAACACTAGTTCATTTCTTCCCATATGTCCTAGCCTTGGTGGACACAATTACCTTGTTACTGATGTTGTGGAGGCGACATGTATCTAGTGGAATTAGTCAAGGCGTGCGCAAGCAGGCCCTGACACCACAATTATCAAAACAAAGAAAGAAAGTGAAGTGATATCCTAATTCAGTTGGAACCCCTAGAAAACCAAGGTTTTCATAACAGGTAAAAAATAAGCATCTTAGCATGTAACAGTTAGTAATTGTTGCTGGTGGGAAGCGACATTTATCTAGTGGAATTAGTCTAGGTGCATGTGTTTATTAAAAAAAAACCTTGTTTAGAAGTGAAGTGATATCCTAATTTGGTTAGAAGCCCTAGAAACCATGGTTTTCATATCAGGTCAAAATAGACATCTTTTTTTTTTTTTGAGACAAGTACTGTTCTGATCCTATGGGAAAGGGTACCATGCTCAAATACCCTGGTTTACATCCTTTTACTCTGAGCTGTAACAGTGTCCAGGCCTTCCGCCTGTATGGTTGGCATTGGTAGATGCTTCTTGTGTGCCTATATGGGGAAGAGATGTAGGAGGTGTTTTCTAGTTGTTACTATCTACATGTTAATGTAATGTAACCAGATTAAGCTTGGTTTATCATGGCGATGAGCCAGCATCATAATTGTCAAGGATTTCTTAGCTTCTATTGGTTCGAACCATTTAGAGTGGTGAGATTAGGATATTATGCTTCAGAATCTGTACGTGATAGCACAAAGGATGATCAAGTTTGGGAGATTGGGGATGTCGCAAATTGGTACCGGGGTGAGCAACAGCTCTTCTGCCTCTTTCACCTGGGCTAAAGGGAAGTCATGCTAAATCGTGTATTCCAGATTGATACTTCTGTATACTAGAAATAGGTGAGTTACTGACTGACGAATTTAGCTATTGATCCAAACTATAGAGTTTTGCTCAGAACCATATTCTTCTTCATTAATTGAGACAGTGTGTAATCATAGTGCCACTAAAATCATCCAGCATGTTAATTTCCCTGTCTGTTAATACTGAAAAGAATGTGTGTGTTTGATAAAGTGATCACAGCCCCTCAAGGTTTAAGTCAAGTCATCCTTTGTGCAGGAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAGGTATCAAATTCATCTCATATTCCCTTTATTCATGCTCTTTGTTCTCTTGGCTTCATTTTTCGTATAACGATTTCTATGACATGGAAATATTATCCAAAGATACATTTGATCTGTGCTTTGAAGTTTGACTTTTTTTTTTTTTGAATATTTTCAATGATTATTTGACTGGGTAGCAGAATAAGTTAAACATGCAACTAGGATATATTTAGCTAAATAAGGCAATTCGACAAAGCAAGTAGATTTTATTACTATGGGGAGTAAACAAGGAAGCAATCGCATAGCTGAATGTATGATCCATGTTTCCCATATCTAGGATAAGTAGTTCACTTCTCAGGTCTGAGGTTTTGCCTTTGTATACTCTGTCGTAGTTTTCTTTAGCGAACAGTTGTAGCTGTTTCTCTATTTGACATGTCTATTAAAACCATGATGATAAATTCCATGTATCTGCTTGAAGTATTCATATACTTGGTGCACATTATGAAGAGGGAAATGAACAAAGGTTTACTGTAATCAGCTTATTTTATAGGCGGAAAGAAATCTCAACTTTCAAGTGTAATAGCCCATCCATTGCATGAGCTCTAATCTCGTGTAATTTCTAGTTTAGACCACCACAGAATTAATCCTCTCTCAAACGTTTACGCTTTTTGACAGTCCTCAGAAAACTAAGTAC</genome_strand>
        <mrna_strand>TGCACCACAAATCTAAGAAGAATCCAAAAACATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAGAAAACTAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8173-2" ref_strand="+" ref_description="SGN-M8173-2 C2_At4g02920-2 [cosii_markers]">
      <seq>gtctagattcaagaatccaaccaaaaagatgtaacccctaatttctcaagggtcattaagtttgtaaaccaccaaattgcaataaaatcttagggaacttgaggtgaatagcaggataagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggaaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcacttgaactcggtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaacgatgtagaaagcggtgaaatagatatatctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacagtctcatgatgctatgtctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcaattcaggaaaaatgattcattctgatggccgtctattaataagtggtgccagtgctagcattgagatgaaggacatactttcaattatctccgagttctacttctcaaatgactcaatgaaatgcacaaagcatgcaatggtggttccatactttgacaggtagcaatagtttctttgcttgaattctgctctttaagtttttgttgagtagatgtgacaagtgttttcttgttcatgtggtttatcttattgaaaataaaacttgttgggcttttctcttctgtattgattctcctatgtgaacaaatgtagcccataaaagctttcgttctggcttgcagcaccataggtttgatgtggttccgactctcgaatatagagatatcatagctaaattattatttttctttcttgaataatttggtatctcagttgaagtgagttagtgtctggtctctcagatgctactagaaggtgacaaaatgtgttggcaagatataagagcaacatgataacgattatcactgatgaggactagattgggaagtgattaaatagttaaaatgaagcttctaccattatgaacaggtaaatgcttggcatagttgcatattatctaaaggtatgaatacaatgatgcaatcaagaccatagaagccagaagggcatgggaaaagaggatgcatagagtgatttgccaaaggagtgtagaaaatcctagttcggaagtacaaaaacactaagtgatttcttcccatatgtcctagcctttggtggacacaattaccttgtaactgatgctggcggaggcgacatgtatctagtggaattagttaaggtgcgtgcaagctggccctaacaccacaatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51833" stop="55666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52133" g_stop="52420" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="469" r_length="181" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="55364" g_length="1161"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="1649" r_length="1180" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-M8173-2" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>1630</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8173-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52133" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="55364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATC-TAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTC--G-TG--ATG-CTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAGGTAGCAATAATTTCTTTGCTTGAATTCTGCTCTTTTAAGTTTTTGTTGAGTAGATGTGACAAGTGTTTTCTTGTTCATGTGGTTTATCTTATTGAAAATAAAA--------GCTTTTCTCTTCTGTATTGATTCTCCTCTGTGAACAGATGTAGCCCATAAAAGCTTTCTTTCTGGCTTGCAGCACCATAGGTTTGA--T-G-T--GA-T-TCGAATATAGAGATATCATAGCTAAATTATTATTTTTCTTTCTTGAATAATTTGGTACCTCAGTTGAAGTGAGTTAGTGCCTTGTCTCTCAGATGCTACTAGAAGGTGACTAAATGTGTGGGCTAGATATAAGAGCAACATGATAACGGTTATCACTGATGAGGACTAGATTGAGAAGCGATTAAATAGTTAAAATGAAGCCTCTACTATTATGAACAGGTAAATGCTTGGTATAGTTGCATATTATCTGAAGGTATAAGTACAACGATGCAATCAAGACCTAAGTAGCCAGATGGGCATGGGAAAAGAGGATGCATAGACAGCGATTTTCCAAAGGAGTGTAGAAAAATCCTAGTTCGGAAGTACAAAAACACTAGTTCATTTCTTCCCATATGTCCTAGCC-TTGGTGGACACAATTACCTTGTTACTGATG-TTGTGGAGGCGACATGTATCTAGTGGAATTAGTCAAGGCGTGCGCAAGCAGGCCCTGACACCACAATTATCAAAACAAAGAAAGA</genome_strand>
        <mrna_strand>GTCTAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTCAAGGGTCATTAAG-TTTGTAAACCACCAAATTGCAATAAAATCTTAGGGAACTTGAGGTGAATAGCAGGATAAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGAAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCACTTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAACGATGTAGAAAGCGGTGAAATAGATATATCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAGTCTCATGATGCTATGTCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCAATTCAGGAAAAATGATTCATTCTGATGGCCGTCTATTAATAAGTGGTGCCAGTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAATGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCATACTTTGACAGGTAGCAATAGTTTCTTTGCTTGAATTCTGCTC-TTTAAGTTTTTGTTGAGTAGATGTGACAAGTGTTTTCTTGTTCATGTGGTTTATCTTATTGAAAATAAAACTTGTTGGGCTTTTCTCTTCTGTATTGATTCTCCTATGTGAACAAATGTAGCCCATAAAAGCTTTCGTTCTGGCTTGCAGCACCATAGGTTTGATGTGGTTCCGACTCTCGAATATAGAGATATCATAGCTAAATTATTATTTTTCTTTCTTGAATAATTTGGTATCTCAGTTGAAGTGAGTTAGTGTCTGGTCTCTCAGATGCTACTAGAAGGTGACAAAATGTGTTGGCAAGATATAAGAGCAACATGATAACGATTATCACTGATGAGGACTAGATTGGGAAGTGATTAAATAGTTAAAATGAAGCTTCTACCATTATGAACAGGTAAATGCTTGGCATAGTTGCATATTATCTAAAGGTATGAATACAATGATGCAATCAAGACCATAGAAGCCAGAAGGGCATGGGAAAAGAGGATGCATAG--AGTGATTTGCCAAAGGAGTGTAG-AAAATCCTAGTTCGGAAGTACAAAAACACTAAGTGATTTCTTCCCATATGTCCTAGCCTTTGGTGGACACAATTACCTTGTAACTGATGCTGGCGGAGGCGACATGTATCTAGTGGAATTAGTTAAGGTGCGTGCAAGCTGGCCCTAACACCACAATT-TCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1375" ref_strand="+" ref_description="SGN-M1375 T0182 [cos_markers]">
      <seq>ggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60700" stop="58310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="367" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58631" g_stop="58610" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="389" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-M1375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGA</genome_strand>
        <mrna_strand>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="40599" PGL_stop="35511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40599" e_stop="40541"/>
            <exon e_start="39270" e_stop="39215"/>
            <exon e_start="38997" e_stop="38839"/>
            <exon e_start="35823" e_stop="35511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40599" e_stop="40541" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39270" e_stop="39215" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.941">
            <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38997" e_stop="38839" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="35823" e_stop="35511" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40599" stop="40541"/>
              <exon start="39270" stop="39215"/>
              <exon start="38997" stop="38839"/>
              <exon start="35823" stop="35511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAAT : ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATG : TTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATG : AGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGACCAAATTAAGAAT</gDNA_template>
            <first_frame> L  K  *  S  T  L  S  A  V  R  R  T  S  T  S  G  E  V  E  I :   *  L  P  R  I  T  E  N  T  V  *  Y  F  L  R  D  K  N   : V  V  F  L  I  L  Q  G  S  G  G  Q  G  S  D  C  R  T  E  E  R  F  G  Y  S  R  N  T  T  F  S  *  S  V  S  Q  H  *  A  *  K  H  *  G  C  *  *  G  Q  V  S  P  H   : E  V  R  E  E  L  L  H  Q  R  I  G  G  Q  I  R  A  V  T  S  *  W  S  *  H  *  T  A  S  *  C  Y  E  E  R  S  S  G  W  L  N  S  R  V  R  N  W  S  V  H  I  S  V  D  K  S  A  A  V  Y  *  F  F  L  L  D  A  F  C  A  *  R  F  S  S  S  S  *  N  L  V  C  R  C  Y  E  C  P  *  C  E  N  C  *  Y  D  I  C  L  L  T  K  L  R   </first_frame>
            <second_frame>  *  S  S  L  P  F  Q  L  Y  D  A  L  P  P  P  A  K  S  K   : Y  S  C  Q  G  L  Q  R  T  Q  C  D  T  S  *  E  I  K  M  :  L  F  F  S  Y  F  K  D  L  V  G  R  E  V  T  V  E  L  K  N  D  L  A  I  R  G  T  L  H  S  V  D  Q  Y  L  N  I  K  L  E  N  T  R  V  V  D  E  D  K  Y  P  H  M  :  R  S  V  R  N  C  F  I  R  G  S  V  V  R  Y  V  Q  L  P  P  D  G  V  D  I  E  L  L  H  D  A  T  R  R  E  A  R  G  G  *  I  L  E  F  E  I  G  L  F  T  F  Q  W  I  S  Q  Q  Q  Y  T  D  F  S  Y  W  M  H  F  A  R  R  G  F  L  H  H  L  K  I  *  Y  A  D  V  M  N  A  R  N  V  K  I  V  D  M  I  S  V  F  *  P  N  *  E  </second_frame>
            <third_frame>   K  V  V  Y  P  F  S  C  T  T  H  F  H  L  R  R  S  R  N  :  I  A  A  K  D  Y  R  E  H  S  V  I  L  P  E  R  *  K  C :   C  F  S  H  T  S  R  I  W  W  A  G  K  *  L  S  N  *  R  T  I  W  L  F  E  E  H  Y  I  Q  L  I  S  I  S  T  L  S  L  K  T  L  G  L  L  M  R  T  S  I  P  T  * :   G  P  *  G  T  A  S  S  E  D  R  W  S  D  T  C  S  Y  L  L  M  E  L  T  L  N  C  F  M  M  L  R  G  E  K  L  G  V  A  E  F  *  S  S  K  L  V  C  S  H  F  S  G  *  V  S  S  S  I  L  I  F  L  T  G  C  I  L  R  V  E  V  F  F  I  I  L  K  F  S  M  Q  M  L  *  M  P  V  M  *  K  L  L  I  *  Y  L  S  F  D  Q  I  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39226" stop="39215"/>
                    <exon start="38997" stop="38839"/>
                    <exon start="35823" stop="35704"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="52077" PGL_stop="57069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52077" e_stop="52420"/>
            <exon e_start="53570" e_stop="53750"/>
            <exon e_start="54204" e_stop="54651"/>
            <exon e_start="56325" e_stop="56399"/>
            <exon e_start="57051" e_stop="57069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.619" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52077" e_stop="52420" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53570" e_stop="53750" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54204" e_stop="54651" e_length="448"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54652" i_stop="56324" i_length="1673"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56325" e_stop="56399" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.619">
            <gDNA_intron_boundary i_start="56400" i_stop="57050" i_length="651"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57051" e_stop="57069" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52077" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54651"/>
              <exon start="56325" stop="56399"/>
              <exon start="57051" stop="57069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCACCACAAATCTAAGAAGAATCCAAAAACATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG : GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG : ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAG : GAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAG : TCCTCAGAAAACTAAGTAC</gDNA_template>
            <first_frame> C  T  T  N  L  R  R  I  Q  K  H  R  K  L  K  A  L  I  L  S  R  F  K  N  P  T  K  K  M  *  P  L  I  S  E  G  P  L  S  F  V  N  H  Q  I  A  I  K  S  R  E  L  K  V  N  S  R  I  S  P  *  C  C  D  Y  Q  *  T  N  H  K  E  E  I  F  G  S  E  T  Q  V  S  E  L  G  F  S  *  S  W  L  N  V  V  L  W  L  L  M  V  I  L  R  G  F  F  H  L  L  N  *  G  F  *  R :   I  V  F  L  F  F  L  V  L  E  *  I  K  I  L  *  S  Q  V  V  L  A  *  G  L  T  R  D  W  I  Y  G  N  R  *  V  G  Y  W  Q  A  I  P  L  S  E  F  Y  Q  P  L  K  D  Q  N  S  *  M  H  E  :  T  I  I  *  T  Q  C  S  *  A  L  G  L  L  N  N  A  Q  G  R  R  I  F  *  S  T  L  D  L  D  Q  M  M  *  K  A  V  K  *  I  *  L  Y  S  L  I  S  W  D  H  W  Y  M  R  *  T  C  I  N  N  N  F  L  L  I  S  N  N  N  L  V  M  L  S  H  L  L  F  I  Q  V  L  R  S  T  Y  G  N  L  L  Q  I  *  *  D  S  I  Q  E  K  *  F  I  L  M  V  V  Y  *  L  V  V  S  L  L  A  L  R  *  R  T  Y  F  Q  L  S  P  S  S  T  S  Q  R  T  Q  *  N  A  Q  S  M  Q  W  W  F  R  T  L  T   : G  R  H  A  R  Q  S  P  K  V  K  V  L  L  R  N  L  T  *  M  H  H  L  Y  G   : V  L  R  K  L  S   </first_frame>
            <second_frame>  A  P  Q  I  *  E  E  S  K  N  I  E  S  *  K  L  *  F  C  Q  D  S  R  I  Q  P  K  R  C  N  P  *  F  L  K  G  H  *  V  L  *  T  T  K  L  Q  *  N  L  G  N  L  R  *  I  A  G  *  A  P  D  A  V  T  I  N  K  P  T  I  K  K  R  F  L  G  Q  K  L  K  F  L  S  W  V  S  L  N  H  G  *  T  L  S  Y  G  F  S  W  L  S  S  V  A  F  F  T  S  *  I  E  G  F  K   : G  *  S  S  F  F  S  *  S  W  S  E  S  R  Y  C  E  V  K  L  C  *  R  K  V  *  P  E  T  G  F  M  E  T  D  E  S  V  I  G  R  Q  S  L  C  Q  N  S  I  N  L  *  R  T  R  T  H  R  C  T  R :   R  S  F  E  L  S  A  L  E  L  W  D  C  *  T  M  H  K  A  G  E  Y  S  E  V  P  *  I  W  I  K  *  C  R  K  R  *  N  R  Y  S  Y  T  L  *  S  H  G  T  T  G  T  C  D  K  H  A  S  T  T  I  S  F  L  S  R  T  T  I  S  *  C  S  A  I  S  C  L  S  K  C  C  A  P  P  M  G  T  F  F  K  F  D  R  T  R  F  R  K  N  D  S  F  *  W  S  S  I  S  *  W  C  H  C  *  H  *  D  E  G  H  T  F  N  Y  L  R  V  L  L  L  K  G  L  N  E  M  H  K  A  C  N  G  G  S  V  L  *  Q  :  E  D  M  Q  D  K  V  Q  R  *  K  F  C  S  E  T  *  R  E  C  I  I  S  T  E  :  S  S  E  N  *  V  </second_frame>
            <third_frame>   H  H  K  S  K  K  N  P  K  T  *  K  V  E  S  F  N  F  V  K  I  Q  E  S  N  Q  K  D  V  T  P  N  F  *  R  A  I  K  F  C  K  P  P  N  C  N  K  I  *  G  T  *  G  E  *  Q  D  K  P  L  M  L  *  L  S  I  N  Q  P  *  R  R  D  F  W  V  R  N  S  S  F  *  V  G  F  L  L  I  M  V  E  R  C  L  M  A  S  H  G  Y  P  P  W  L  F  S  P  P  E  L  R  V  L  K  :  D  S  L  P  F  F  P  S  P  G  V  N  Q  D  I  V  K  S  S  C  A  S  V  R  F  N  Q  R  L  D  L  W  K  P  M  S  R  L  L  A  G  N  P  F  V  R  I  L  S  T  S  E  G  P  E  L  I  D  A  R   : D  D  H  L  N  S  V  L  L  S  F  G  I  A  E  Q  C  T  R  Q  E  N  I  L  K  Y  L  R  S  G  S  N  D  V  E  S  G  E  I  D  I  A  I  L  F  D  L  M  G  P  L  V  H  A  I  N  M  H  Q  Q  Q  F  P  S  Y  L  E  Q  Q  S  R  D  A  Q  P  S  L  V  Y  P  S  A  A  L  H  L  W  E  P  S  S  N  L  I  G  L  D  S  G  K  M  I  H  S  D  G  R  L  L  V  S  G  V  T  A  S  I  E  M  K  D  I  L  S  I  I  S  E  F  Y  F  S  K  D  S  M  K  C  T  K  H  A  M  V  V  P  Y  F  D  R :   K  T  C  K  T  K  S  K  G  E  S  S  A  Q  K  L  D  V  N  A  S  S  L  R  S :   P  Q  K  T  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52325" stop="52420"/>
                    <exon start="53570" stop="53750"/>
                    <exon start="54204" stop="54651"/>
                    <exon start="56325" stop="56399"/>
                    <exon start="57051" stop="57069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGFLLIMVERCLMASHGYPPWLFSPPELRVLKDSLPFFPSPGVNQDIVKSSCASVRFNQRLDLWKPMSRLLAGNPFVRILSTSEGPELIDARDDHLNSVLLSFGIAEQCTRQENILKYLRSGSNDVESGEIDIAILFDLMGPLVHAINMHQQQFPSYLEQQSRDAQPSLVYPSAALHLWEPSSNLIGLDSGKMIHSDGRLLVSGVTASIEMKDILSIISEFYFSKDSMKCTKHAMVVPYFDRKTCKTKSKGESSAQKLDVNASSLRSPQKTKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52133" e_stop="52420"/>
            <exon e_start="53570" e_stop="53750"/>
            <exon e_start="54204" e_stop="55364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.994" e_score="0.951"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="0.950"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="52133" e_stop="52420" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="53570" e_stop="53750" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="54204" e_stop="55364" e_length="1161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52133" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="55364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8173-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG : GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG : ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAGGTAGCAATAATTTCTTTGCTTGAATTCTGCTCTTTTAAGTTTTTGTTGAGTAGATGTGACAAGTGTTTTCTTGTTCATGTGGTTTATCTTATTGAAAATAAAAGCTTTTCTCTTCTGTATTGATTCTCCTCTGTGAACAGATGTAGCCCATAAAAGCTTTCTTTCTGGCTTGCAGCACCATAGGTTTGATGTGATTCGAATATAGAGATATCATAGCTAAATTATTATTTTTCTTTCTTGAATAATTTGGTACCTCAGTTGAAGTGAGTTAGTGCCTTGTCTCTCAGATGCTACTAGAAGGTGACTAAATGTGTGGGCTAGATATAAGAGCAACATGATAACGGTTATCACTGATGAGGACTAGATTGAGAAGCGATTAAATAGTTAAAATGAAGCCTCTACTATTATGAACAGGTAAATGCTTGGTATAGTTGCATATTATCTGAAGGTATAAGTACAACGATGCAATCAAGACCTAAGTAGCCAGATGGGCATGGGAAAAGAGGATGCATAGACAGCGATTTTCCAAAGGAGTGTAGAAAAATCCTAGTTCGGAAGTACAAAAACACTAGTTCATTTCTTCCCATATGTCCTAGCCTTGGTGGACACAATTACCTTGTTACTGATGTTGTGGAGGCGACATGTATCTAGTGGAATTAGTCAAGGCGTGCGCAAGCAGGCCCTGACACCACAATTATCAAAACAAAGAAAGA</gDNA_template>
            <first_frame> V  K  I  Q  E  S  N  Q  K  D  V  T  P  N  F  *  R  A  I  K  F  C  K  P  P  N  C  N  K  I  *  G  T  *  G  E  *  Q  D  K  P  L  M  L  *  L  S  I  N  Q  P  *  R  R  D  F  W  V  R  N  S  S  F  *  V  G  F  L  L  I  M  V  E  R  C  L  M  A  S  H  G  Y  P  P  W  L  F  S  P  P  E  L  R  V  L  K  :  D  S  L  P  F  F  P  S  P  G  V  N  Q  D  I  V  K  S  S  C  A  S  V  R  F  N  Q  R  L  D  L  W  K  P  M  S  R  L  L  A  G  N  P  F  V  R  I  L  S  T  S  E  G  P  E  L  I  D  A  R   : D  D  H  L  N  S  V  L  L  S  F  G  I  A  E  Q  C  T  R  Q  E  N  I  L  K  Y  L  R  S  G  S  N  D  V  E  S  G  E  I  D  I  A  I  L  F  D  L  M  G  P  L  V  H  A  I  N  M  H  Q  Q  Q  F  P  S  Y  L  E  Q  Q  S  R  D  A  Q  P  S  L  V  Y  P  S  A  A  L  H  L  W  E  P  S  S  N  L  I  G  L  D  S  G  K  M  I  H  S  D  G  R  L  L  V  S  G  V  T  A  S  I  E  M  K  D  I  L  S  I  I  S  E  F  Y  F  S  K  D  S  M  K  C  T  K  H  A  M  V  V  P  Y  F  D  R  *  Q  *  F  L  C  L  N  S  A  L  L  S  F  C  *  V  D  V  T  S  V  F  L  F  M  W  F  I  L  L  K  I  K  A  F  L  F  C  I  D  S  P  L  *  T  D  V  A  H  K  S  F  L  S  G  L  Q  H  H  R  F  D  V  I  R  I  *  R  Y  H  S  *  I  I  I  F  L  S  *  I  I  W  Y  L  S  *  S  E  L  V  P  C  L  S  D  A  T  R  R  *  L  N  V  W  A  R  Y  K  S  N  M  I  T  V  I  T  D  E  D  *  I  E  K  R  L  N  S  *  N  E  A  S  T  I  M  N  R  *  M  L  G  I  V  A  Y  Y  L  K  V  *  V  Q  R  C  N  Q  D  L  S  S  Q  M  G  M  G  K  E  D  A  *  T  A  I  F  Q  R  S  V  E  K  S  *  F  G  S  T  K  T  L  V  H  F  F  P  Y  V  L  A  L  V  D  T  I  T  L  L  L  M  L  W  R  R  H  V  S  S  G  I  S  Q  G  V  R  K  Q  A  L  T  P  Q  L  S  K  Q  R  K  </first_frame>
            <second_frame>  S  R  F  K  N  P  T  K  K  M  *  P  L  I  S  E  G  P  L  S  F  V  N  H  Q  I  A  I  K  S  R  E  L  K  V  N  S  R  I  S  P  *  C  C  D  Y  Q  *  T  N  H  K  E  E  I  F  G  S  E  T  Q  V  S  E  L  G  F  S  *  S  W  L  N  V  V  L  W  L  L  M  V  I  L  R  G  F  F  H  L  L  N  *  G  F  *  R :   I  V  F  L  F  F  L  V  L  E  *  I  K  I  L  *  S  Q  V  V  L  A  *  G  L  T  R  D  W  I  Y  G  N  R  *  V  G  Y  W  Q  A  I  P  L  S  E  F  Y  Q  P  L  K  D  Q  N  S  *  M  H  E  :  T  I  I  *  T  Q  C  S  *  A  L  G  L  L  N  N  A  Q  G  R  R  I  F  *  S  T  L  D  L  D  Q  M  M  *  K  A  V  K  *  I  *  L  Y  S  L  I  S  W  D  H  W  Y  M  R  *  T  C  I  N  N  N  F  L  L  I  S  N  N  N  L  V  M  L  S  H  L  L  F  I  Q  V  L  R  S  T  Y  G  N  L  L  Q  I  *  *  D  S  I  Q  E  K  *  F  I  L  M  V  V  Y  *  L  V  V  S  L  L  A  L  R  *  R  T  Y  F  Q  L  S  P  S  S  T  S  Q  R  T  Q  *  N  A  Q  S  M  Q  W  W  F  R  T  L  T  G  S  N  N  F  F  A  *  I  L  L  F  *  V  F  V  E  *  M  *  Q  V  F  S  C  S  C  G  L  S  Y  *  K  *  K  L  F  S  S  V  L  I  L  L  C  E  Q  M  *  P  I  K  A  F  F  L  A  C  S  T  I  G  L  M  *  F  E  Y  R  D  I  I  A  K  L  L  F  F  F  L  E  *  F  G  T  S  V  E  V  S  *  C  L  V  S  Q  M  L  L  E  G  D  *  M  C  G  L  D  I  R  A  T  *  *  R  L  S  L  M  R  T  R  L  R  S  D  *  I  V  K  M  K  P  L  L  L  *  T  G  K  C  L  V  *  L  H  I  I  *  R  Y  K  Y  N  D  A  I  K  T  *  V  A  R  W  A  W  E  K  R  M  H  R  Q  R  F  S  K  G  V  *  K  N  P  S  S  E  V  Q  K  H  *  F  I  S  S  H  M  S  *  P  W  W  T  Q  L  P  C  Y  *  C  C  G  G  D  M  Y  L  V  E  L  V  K  A  C  A  S  R  P  *  H  H  N  Y  Q  N  K  E  R </second_frame>
            <third_frame>   Q  D  S  R  I  Q  P  K  R  C  N  P  *  F  L  K  G  H  *  V  L  *  T  T  K  L  Q  *  N  L  G  N  L  R  *  I  A  G  *  A  P  D  A  V  T  I  N  K  P  T  I  K  K  R  F  L  G  Q  K  L  K  F  L  S  W  V  S  L  N  H  G  *  T  L  S  Y  G  F  S  W  L  S  S  V  A  F  F  T  S  *  I  E  G  F  K   : G  *  S  S  F  F  S  *  S  W  S  E  S  R  Y  C  E  V  K  L  C  *  R  K  V  *  P  E  T  G  F  M  E  T  D  E  S  V  I  G  R  Q  S  L  C  Q  N  S  I  N  L  *  R  T  R  T  H  R  C  T  R :   R  S  F  E  L  S  A  L  E  L  W  D  C  *  T  M  H  K  A  G  E  Y  S  E  V  P  *  I  W  I  K  *  C  R  K  R  *  N  R  Y  S  Y  T  L  *  S  H  G  T  T  G  T  C  D  K  H  A  S  T  T  I  S  F  L  S  R  T  T  I  S  *  C  S  A  I  S  C  L  S  K  C  C  A  P  P  M  G  T  F  F  K  F  D  R  T  R  F  R  K  N  D  S  F  *  W  S  S  I  S  *  W  C  H  C  *  H  *  D  E  G  H  T  F  N  Y  L  R  V  L  L  L  K  G  L  N  E  M  H  K  A  C  N  G  G  S  V  L  *  Q  V  A  I  I  S  L  L  E  F  C  S  F  K  F  L  L  S  R  C  D  K  C  F  L  V  H  V  V  Y  L  I  E  N  K  S  F  S  L  L  Y  *  F  S  S  V  N  R  C  S  P  *  K  L  S  F  W  L  A  A  P  *  V  *  C  D  S  N  I  E  I  S  *  L  N  Y  Y  F  S  F  L  N  N  L  V  P  Q  L  K  *  V  S  A  L  S  L  R  C  Y  *  K  V  T  K  C  V  G  *  I  *  E  Q  H  D  N  G  Y  H  *  *  G  L  D  *  E  A  I  K  *  L  K  *  S  L  Y  Y  Y  E  Q  V  N  A  W  Y  S  C  I  L  S  E  G  I  S  T  T  M  Q  S  R  P  K  *  P  D  G  H  G  K  R  G  C  I  D  S  D  F  P  K  E  C  R  K  I  L  V  R  K  Y  K  N  T  S  S  F  L  P  I  C  P  S  L  G  G  H  N  Y  L  V  T  D  V  V  E  A  T  C  I  *  W  N  *  S  R  R  A  Q  A  G  P  D  T  T  I  I  K  T  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52325" stop="52420"/>
                    <exon start="53570" stop="53750"/>
                    <exon start="54204" stop="54655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGFLLIMVERCLMASHGYPPWLFSPPELRVLKDSLPFFPSPGVNQDIVKSSCASVRFNQRLDLWKPMSRLLAGNPFVRILSTSEGPELIDARDDHLNSVLLSFGIAEQCTRQENILKYLRSGSNDVESGEIDIAILFDLMGPLVHAINMHQQQFPSYLEQQSRDAQPSLVYPSAALHLWEPSSNLIGLDSGKMIHSDGRLLVSGVTASIEMKDILSIISEFYFSKDSMKCTKHAMVVPYFDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="60400" PGL_stop="58610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60400" e_stop="60338"/>
            <exon e_start="60247" e_stop="60185"/>
            <exon e_start="59838" e_stop="59598"/>
            <exon e_start="58631" e_stop="58610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60400" e_stop="60338" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60247" e_stop="60185" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59838" e_stop="59598" e_length="241"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58631" e_stop="58610" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60400" stop="60338"/>
              <exon start="60247" stop="60185"/>
              <exon start="59838" stop="59598"/>
              <exon start="58631" stop="58610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA : GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG : GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG : GACAAAGATTTGCCCTGAGAGA</gDNA_template>
            <first_frame> G  T  L  K  S  T  V  T  G  V  E  M  F  K  K  I  L  D  N  G  Q  :  A  G  D  N  V  G  L  L  L  R  G  L  K  R  E  D  I  T  R  G  M  :  V  I  A  K  P  G  S  V  K  T  S  K  K  F  E  A  E  I  Y  V  L  T  K  D  E  G  G  R  H  T  A  F  F  S  N  Y  R  P  Q  F  Y  M  R  T  A  D  I  T  G  K  V  E  L  P  E  N  V  K  M  V  M  P  G  D  N  V  T  A  T  F  E  L  I  S  P  V  P  L  E  T   : G  Q  R  F  A  L  R   </first_frame>
            <second_frame>  E  P  *  N  L  Q  *  L  V  S  K  C  S  R  R  S  W  I  M  V  K :   L  V  I  M  S  G  F  F  Y  V  A  *  N  E  K  I  L  H  E  E  W :   *  L  Q  S  L  V  V  *  K  R  P  R  N  L  R  Q  K  Y  T  Y  *  L  R  M  K  V  V  G  T  L  L  F  S  Q  T  I  G  L  S  S  T  *  E  L  L  T  L  P  V  K  W  S  C  L  K  M  S  R  W  L  C  P  V  I  M  L  Q  L  P  L  S  *  Y  L  Q  F  L  L  K  Q  :  D  K  D  L  P  *  E  </second_frame>
            <third_frame>   N  L  K  I  Y  S  D  W  C  R  N  V  Q  E  D  L  G  *  W  S   : S  W  *  *  C  R  A  S  S  T  W  L  E  T  R  R  Y  Y  T  R  N   : G  N  C  K  A  W  *  C  E  N  V  Q  E  I  *  G  R  N  I  R  T  N  *  G  *  R  W  S  A  H  C  F  F  L  K  L  *  A  S  V  L  H  E  N  C  *  H  Y  R  *  S  G  V  A  *  K  C  Q  D  G  Y  A  R  *  *  C  Y  S  Y  L  *  A  D  I  S  S  S  S  *  N  R :   T  K  I  C  P  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60400" stop="60338"/>
                    <exon start="60247" stop="60185"/>
                    <exon start="59838" stop="59598"/>
                    <exon start="58631" stop="58612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDITRGMVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTATFELISPVPLETGQRFALR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 9632 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2408 bytes was the average size of a spliced alignment
$ 8352 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2784 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 11:36:52
-->
