<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 11:32:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="9282" stop="8180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8978" g_stop="8480" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="553" r_length="499" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8978" e_stop="8480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGATTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACTAATTTCTGGTGATTTTTCATCTTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGC-AAACCTTCCTCAAATTCAAAACGCAAATGTAAAATATTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</genome_strand>
        <mrna_strand>CTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354965" ref_strand="+" ref_description="SGN-E354965 [cTOS-19-M24]">
      <seq>gataagacgatagattcaagttctatctcaccaaaagggtaagacatcaattagagttttgatacaccgtgattgggttcaagttccatagaattatggcgtaacacgccttacatgggtaagacattgagtttgatccaatgcataaaatgatgactaagaaaaataatatatttttgatgaaatgtctttaaattcatcatattgaatttgctccatttcttgaaaagaatatggtagcaacatgtgataactctgaaatccacctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtttgaaagatgacaaataattaatgatatagaataagggagtggagggaaagaattataatagtcatcattgtggtaatgataaaaggaagaacactatgagttcttcaaatagtccttcaaaatgtgaaggcaacttttattatcaaaatggtatgaaaggttattagacttgtcaatgttgtcaaccccataatttgacaagtttataaatcctctatcatgacacaagaagataaagtgatggtacacttcatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagccatgacaatgtgcttataatgcaaatttatgaagtacatataaataattagttcattccttgaagagaatgtgacttgtgatgagtatcgtgaatgctcgaccattctataaaagaatgggtccaaatgtgataaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="11801" stop="13167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12101" g_stop="12867" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E354965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12101" e_stop="12867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTTTGATCCAATGCATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATT</genome_strand>
        <mrna_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTTTGATCCAATGCATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12](-)">
      <seq>aaaatgatgactaagaaaatcattatatttttgatgaaaatgtctgaaaattcatcatattgaatttgctccattccttgaaaagaatgtggtagcaacatgtgataactctgaaatccgcctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtctgaaagatgacaaataattaatgatatgaataaaggcgtggaaggacagaattataatagtcatcattgtggtaatgataaaaggaataacaatatgagttcttcaaatagtccttcaaaatgtgaagacaatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="11947" stop="13218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12247" g_stop="12922" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12247" e_stop="12922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGATGACTAAGAAAAATAATATATTTTTGATG-AAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATTATAGGTTGGATATATGCCACAACTCGCCTCTATGGAAGGTTTGAGAAAAAATGAT</genome_strand>
        <mrna_strand>AAAATGATGACTAAGAAAATCATTATATTTTTGATGAAAATGTCTGAAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGCCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATGATAT-GAATAAAGGCGTGGAAGGACAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAATAACAATATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="12252" stop="13225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12552" g_stop="12905" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12552" e_stop="12905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATTATAGGTTGGATATATGCCACAACTCGCCTCTATGGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311198" ref_strand="+" ref_description="SGN-E311198 [cLEZ-16-E6]">
      <seq>ctaaagtagtctaccctttcagctgtacgacgcacttccacctccggcgaagtcgaaatatagctgccaaggattacagagaacacagtgtgatacttcctgagagataaaaatgttgtttttctcatacttcaaggatctggtgggcagggaagtgactgtcgaactgaagaacgatttggctattcgaggaacactacattcagttgatcagtatctcaacattaagcttgaaaacactagggttgttgatgaggacaagtatccccacatgaggtccgtgaggaactgcttcatcagaggatcggtggtcagatacgtgcagttacctcctgatggagttgacattgaactgcttcatgatgctacgaggagagaagctcggggtggctgaattctagagttcgaaattggtctgttcacatttcagtggataagtcagcagcagtatactgatttttcttactggatgcattttgcgcgtagaggttttcttcatcatcttaaaatttagtatgcagatgttatgaatgcccgtaatgtgaaaattgttgatatgatatctgtcttttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40899" stop="35212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40599" g_stop="40541" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39270" g_stop="39215" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="115" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38997" g_stop="38839" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="274" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35823" g_stop="35511" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="587" r_length="313" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E311198" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40599" e_stop="40541"/>
          <exon e_start="39270" e_stop="39215"/>
          <exon e_start="38997" e_stop="38839"/>
          <exon e_start="35823" e_stop="35511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTGCGACTGTTCTGCGACTTTTTTTCAATTTTTGGTTGCTGCCAGTCTGCCACTGCTTGTAAGTTCTCTTCTTCTTCTTCTTCTCTTCTTCTCTGCGTGGCTGCTGCGTCTGATCCTTTTGTGATTTAATTATGTTTTTGCTTTATATGTTATGACTTATGAGGATTCTTGACTATCTATTTACTTTTAATCTAATAATATATTACCTCTATTCAGTTATTTAATATTTTTTTTATTTTTATACTATATATGCTTTACTTAAAAAAAGCTCGCGCTTCGCTTCTGTGAAGCGAGCCCTCGTCGCTTTTTTCCGCTTCTTTCTTCCCAAAACACTGGTTGGGGGCGAGTTCGAGGTGGTAAGGGGGTTAAGGGAGATGATGGGTAGAGAGTAGGGTCTCGGAGTATAGGGATGTTGACGAGGAAATCCATAGAGCTTTTGAGGATTCTCGAGAAGTGGAGGGTAACTTGTGCATGCTTTGATATCTGCATATCTCACCTCCAAATCCCTCATATATTATGAGCTTTAATAATATCTCACAGTTTTTTTTGAAGCAGATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATGGTACTGCTACCTGATCCCTCTTTCTTAATGCTGTAGCCTGTATGTTCCTCTTTATACACGCCTAATTTGTATATAATTGGTGTCTGCTTTGTTTTTTTCGATTGGTCTTGAATAGAAAGTTTATTTACTGATCACTTCTGATTTGAGTTTTTTTCTCATGAATTTGTTTGGTCTATGTTCTAACTTGGTTTTCCCCCTGGCCTTCTGTGTTTTCCAGTTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATGGTAATTCCTCATTCTTTCTCTTGTATCTTTGTTCTTCGTATTTTCTGTTGTTGGCTTTATCTGTGAAAATATGGTTTATTACCTATATTTAGTTTGAAGATGCATTGCATCTTGCCTCTCTTTCACCTTCTCTTTTTATGTGTATACGATCTGTTGAAAACCTCTGTTTTTGGCTCTTCCTTTCTCAATTCAAGAATTCTTGAATTAGTTGTTTATGCTTTTGTAGTATGCAATAAAACAAGTGGATATTTTCTCTTCCATAGTACTCCGGAGTTGTGAAGCCGATAGTTTTGCTGGAAACTACTAATGTTGATTGTATATGTGAATCGAGAAGGTCAATTTGATGTATTAACTTCTGTGTTTATATGATTCTGGCAACTACTGCTCACTGTGATATGGGATCCTTAGTCTATATGGGGATGAGGTTTTCCTATCACTATGACTATGATTATTTGCGGCTTTCACCTAGAAATGTTTAAGCTCAGTGTTCTTTCATAGTTTTTGTTAGCTACGCTATGATCTGTTCACCTTTCTGTTGAATGAAGTACTAATGCTATGTAAGGAGGTCTGCCTTTACAGTCTTTGATCCTTTGGAAACTGATAATTTGTTTATTACAAGGCTAAGAAGTTGTAAGTTTGGGAATTAAATATGACTGTAGCGGTGCATTGCTGCAGAGGATCTAAAGCTTACCTTAAATAGCAGATTATTAGCATGTCCTGACCTGATAGTTGCTCATAAGTCGAGACCCTGTACTGAACCTTTGCTCTAATGCATGTGGTAGAATGAAATATGATTGTCTATGATAGCATGTGTGGAGGAATAACTCCAATAAAAATACTTGGACTTTGGAAGTCTTAGAAGGCCCATGACAAGATCTCGAATAAGAAACTTCAAAAACAAGCTCATTGTTTTTAATTGTAAAGACGAAGTGCCTAGTATTGGAAGAAGAGCTCAAGCCAAGAAAAATCTTTTGTCTTAGTGTTATAGCTTTTTTATTGGCTGAATTGAAGTCCAAGATGAGGTAGGATATGGGGTTCAAGAACCAGCCGTTGAAGGAGGTCCATATCATTTTAATTTAGGAAAAATTTAGCCACCTAAATTGTGCCAAACTTGCATCCCATGAATCTCCCACTTAGGCCACATTGTAGCCAAAATGACCCATTAGGTGTGCAAATCGATAGGAGAGTTGCTGCTCAAGTTGCTTGCAAGTTGTCTTCAAGGTTCTAAGAGTTTCCTTAATTTTAGGCACTAATTAGGGGAGCCTAGCACATGTCTCCCTTGATTTTAGGAATTACTCGAACCTTCATATTTTAGTGGGAAAATAACTAGGATAAAATATGAAATCTTTGACTAATCCCTAAAAATAGGGAAACCATGTGTTGGGCTACCTTAATTACGTAGAACCTACAATTAAAGAACATCTTGAAGATAACTTGCAAGCAACTTAAGCAACAACTCTCCTATCAATTTGTACACCTGTGTGATCCTTCTTGGATAGCAAGGAAGCTCATTTTAAGGGCTAAAATGTGCCCCAAGTGGGAGCTTTGCTAGGTGCATGTTTGGCACAATCCAGGTGCCTAAATTGGTCCAAAGTGCACTGGTTTGGACCTCCATAAAAGGCATGTTTTTCATCTTTGGCTTCAATTTGGCCCACAAAAATAGCTAGAACACTTGTGCAAAAGATCCTCTTGGCTTGAACTCTTCTCCCAAAACTAGACACTTCTTTCTTTGCAATTGAAGCCCAATTAGTTTCTTTTTGAAGTTTCTTATTTGAGATCTTGTCATAGGCCTTTTAAGAGCTTCATCAAAGTTCTTTATTGTATTTATGCTTCCGTGGCTGCTATCAGCCTTCCTCTAGATACACTACCACATGTTTTTATGGAACTCTTTGATGAAATTCTTTTGTTGTTTCAACAGGTTGAATTTGTTGTGTAGTTGCTGCCTTTTTGGTCTCACCACTTTGAACTAAAACTTATGTGATTGTGTTAATTTCCAGCATGTCACAATTCCAGTCTTATTGTCTAGGACTTCTTTTCTATCTGGTTTTCTAGAAGTACGAATTATAAATGGAGCTACAATCTCTGTCAGCCCTTATACTTTGACTAGATTCACAAATTGGAACGAGAAGCGACTATATCTAGATGATGTCAGAGAACGCAATTGGGCTTTGGCTGATTAAGCCTCACTCGCCCTGGCAAGCAAAGTCAATGGTGAACTTCATATTCCCCCTTTCACCTTTCTACTCTTTTCCCACTAAGTTGGATTCTCTCTCCTTTTGTCTTCGTGCATCGTTTTTCCTTTTCATTCACTCACCAGCCTCACCCGCTTCTGATTTAATAAGAACAGAAGTTCACCTGTTTCTCATGTCCCATGGGATGTGGTGGTACACACCCACTTCCTTGTAGTCTGTAGAGCTGGGAAAACAGATCTAGCTAGAGCTTCCACGTGATAAATTTCATAGATCTGAATTTACAAACATTAAATGAAAGAAGATGTATCATAAGAAAATGATGGTTTCTTTCCGTTCCTTGTATTTTATATGAGAAGTTATATAGACATCAACCATTCCCTATACACACTATCCCTATTCTTTTGAATATCCGTGATTCCGGTAGCAACCTTCTTGCATTGATCAATTTTTCCGAAAGTGTGCAAGAGTATGAATGATATTGAAACTATATTCCAAAGTAGAATCTACTAGTAAGTAGCTGCATGTAGTTATTGACCTAATAAATCCGACCTGACAGCTTAAAATTTGCCTTTATGCAACTAGTGATATGTGTGTTGACTGCTGTATCACGATGTACATGTACACTTGCGACTTACGAGCCTATGAAAACGAAAATGGAAGTTGAGAAAAGGAGTGAGAAACATGGATATGTAGTATGTTCCCCTTGTCGTTTCCTCCCCACTGCCATCACCCCTTCTGTTTCCCCCTCTATTATTTATGAATATTAGTACTTCTCTGATCAGAATGCTAATACATACGTCCTATGTTTCTTTTATGGCAATAGAGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGACCAAATTAAGAAT</genome_strand>
        <mrna_strand>CTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATG.........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399697" ref_strand="+" ref_description="SGN-E399697 [cSTC-2-I19]">
      <seq>aagtagtctcccctttcagctgtacgacgcacttccacctccggcgaaatcgaactatagctgccaaggattacagagaacacagtgtgatactccctgagagataaaaatgttgtttttctcatacttcaaggacctggtgggcagggaagtgactgtcgaactgaagaatgatttggctattcgaggaacactacattcagttgatcagtatctcaacattaagcttgaaaacacgagggttgttgatgaggacaagtatccccacatgaggtcggtgaggaactgcttcatcagaggatcggtggtgagatacgtgcagttacctccggatggagttgacatagaactgcttcatgatgctacgaggagagaagctcggggtggctaaattctagagttcgaaattggtctattcacatttcagcggataagtcagcagcagtatactgatttttcttactggatgcattttgcgcgcagtgattttcttcatcatcttaaaatttagtatgcaggtgttatgaatacccataatgtgaaaactgtggatatgaaatctgtcttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40896" stop="35223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40596" g_stop="40541" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39270" g_stop="39215" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="112" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38997" g_stop="38839" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="271" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35823" g_stop="35523" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="572" r_length="301" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E399697" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40596" e_stop="40541"/>
          <exon e_start="39270" e_stop="39215"/>
          <exon e_start="38997" e_stop="38839"/>
          <exon e_start="35823" e_stop="35523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTGCGACTGTTCTGCGACTTTTTTTCAATTTTTGGTTGCTGCCAGTCTGCCACTGCTTGTAAGTTCTCTTCTTCTTCTTCTTCTCTTCTTCTCTGCGTGGCTGCTGCGTCTGATCCTTTTGTGATTTAATTATGTTTTTGCTTTATATGTTATGACTTATGAGGATTCTTGACTATCTATTTACTTTTAATCTAATAATATATTACCTCTATTCAGTTATTTAATATTTTTTTTATTTTTATACTATATATGCTTTACTTAAAAAAAGCTCGCGCTTCGCTTCTGTGAAGCGAGCCCTCGTCGCTTTTTTCCGCTTCTTTCTTCCCAAAACACTGGTTGGGGGCGAGTTCGAGGTGGTAAGGGGGTTAAGGGAGATGATGGGTAGAGAGTAGGGTCTCGGAGTATAGGGATGTTGACGAGGAAATCCATAGAGCTTTTGAGGATTCTCGAGAAGTGGAGGGTAACTTGTGCATGCTTTGATATCTGCATATCTCACCTCCAAATCCCTCATATATTATGAGCTTTAATAATATCTCACAGTTTTTTTTGAAGCAGATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATGGTACTGCTACCTGATCCCTCTTTCTTAATGCTGTAGCCTGTATGTTCCTCTTTATACACGCCTAATTTGTATATAATTGGTGTCTGCTTTGTTTTTTTCGATTGGTCTTGAATAGAAAGTTTATTTACTGATCACTTCTGATTTGAGTTTTTTTCTCATGAATTTGTTTGGTCTATGTTCTAACTTGGTTTTCCCCCTGGCCTTCTGTGTTTTCCAGTTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATGGTAATTCCTCATTCTTTCTCTTGTATCTTTGTTCTTCGTATTTTCTGTTGTTGGCTTTATCTGTGAAAATATGGTTTATTACCTATATTTAGTTTGAAGATGCATTGCATCTTGCCTCTCTTTCACCTTCTCTTTTTATGTGTATACGATCTGTTGAAAACCTCTGTTTTTGGCTCTTCCTTTCTCAATTCAAGAATTCTTGAATTAGTTGTTTATGCTTTTGTAGTATGCAATAAAACAAGTGGATATTTTCTCTTCCATAGTACTCCGGAGTTGTGAAGCCGATAGTTTTGCTGGAAACTACTAATGTTGATTGTATATGTGAATCGAGAAGGTCAATTTGATGTATTAACTTCTGTGTTTATATGATTCTGGCAACTACTGCTCACTGTGATATGGGATCCTTAGTCTATATGGGGATGAGGTTTTCCTATCACTATGACTATGATTATTTGCGGCTTTCACCTAGAAATGTTTAAGCTCAGTGTTCTTTCATAGTTTTTGTTAGCTACGCTATGATCTGTTCACCTTTCTGTTGAATGAAGTACTAATGCTATGTAAGGAGGTCTGCCTTTACAGTCTTTGATCCTTTGGAAACTGATAATTTGTTTATTACAAGGCTAAGAAGTTGTAAGTTTGGGAATTAAATATGACTGTAGCGGTGCATTGCTGCAGAGGATCTAAAGCTTACCTTAAATAGCAGATTATTAGCATGTCCTGACCTGATAGTTGCTCATAAGTCGAGACCCTGTACTGAACCTTTGCTCTAATGCATGTGGTAGAATGAAATATGATTGTCTATGATAGCATGTGTGGAGGAATAACTCCAATAAAAATACTTGGACTTTGGAAGTCTTAGAAGGCCCATGACAAGATCTCGAATAAGAAACTTCAAAAACAAGCTCATTGTTTTTAATTGTAAAGACGAAGTGCCTAGTATTGGAAGAAGAGCTCAAGCCAAGAAAAATCTTTTGTCTTAGTGTTATAGCTTTTTTATTGGCTGAATTGAAGTCCAAGATGAGGTAGGATATGGGGTTCAAGAACCAGCCGTTGAAGGAGGTCCATATCATTTTAATTTAGGAAAAATTTAGCCACCTAAATTGTGCCAAACTTGCATCCCATGAATCTCCCACTTAGGCCACATTGTAGCCAAAATGACCCATTAGGTGTGCAAATCGATAGGAGAGTTGCTGCTCAAGTTGCTTGCAAGTTGTCTTCAAGGTTCTAAGAGTTTCCTTAATTTTAGGCACTAATTAGGGGAGCCTAGCACATGTCTCCCTTGATTTTAGGAATTACTCGAACCTTCATATTTTAGTGGGAAAATAACTAGGATAAAATATGAAATCTTTGACTAATCCCTAAAAATAGGGAAACCATGTGTTGGGCTACCTTAATTACGTAGAACCTACAATTAAAGAACATCTTGAAGATAACTTGCAAGCAACTTAAGCAACAACTCTCCTATCAATTTGTACACCTGTGTGATCCTTCTTGGATAGCAAGGAAGCTCATTTTAAGGGCTAAAATGTGCCCCAAGTGGGAGCTTTGCTAGGTGCATGTTTGGCACAATCCAGGTGCCTAAATTGGTCCAAAGTGCACTGGTTTGGACCTCCATAAAAGGCATGTTTTTCATCTTTGGCTTCAATTTGGCCCACAAAAATAGCTAGAACACTTGTGCAAAAGATCCTCTTGGCTTGAACTCTTCTCCCAAAACTAGACACTTCTTTCTTTGCAATTGAAGCCCAATTAGTTTCTTTTTGAAGTTTCTTATTTGAGATCTTGTCATAGGCCTTTTAAGAGCTTCATCAAAGTTCTTTATTGTATTTATGCTTCCGTGGCTGCTATCAGCCTTCCTCTAGATACACTACCACATGTTTTTATGGAACTCTTTGATGAAATTCTTTTGTTGTTTCAACAGGTTGAATTTGTTGTGTAGTTGCTGCCTTTTTGGTCTCACCACTTTGAACTAAAACTTATGTGATTGTGTTAATTTCCAGCATGTCACAATTCCAGTCTTATTGTCTAGGACTTCTTTTCTATCTGGTTTTCTAGAAGTACGAATTATAAATGGAGCTACAATCTCTGTCAGCCCTTATACTTTGACTAGATTCACAAATTGGAACGAGAAGCGACTATATCTAGATGATGTCAGAGAACGCAATTGGGCTTTGGCTGATTAAGCCTCACTCGCCCTGGCAAGCAAAGTCAATGGTGAACTTCATATTCCCCCTTTCACCTTTCTACTCTTTTCCCACTAAGTTGGATTCTCTCTCCTTTTGTCTTCGTGCATCGTTTTTCCTTTTCATTCACTCACCAGCCTCACCCGCTTCTGATTTAATAAGAACAGAAGTTCACCTGTTTCTCATGTCCCATGGGATGTGGTGGTACACACCCACTTCCTTGTAGTCTGTAGAGCTGGGAAAACAGATCTAGCTAGAGCTTCCACGTGATAAATTTCATAGATCTGAATTTACAAACATTAAATGAAAGAAGATGTATCATAAGAAAATGATGGTTTCTTTCCGTTCCTTGTATTTTATATGAGAAGTTATATAGACATCAACCATTCCCTATACACACTATCCCTATTCTTTTGAATATCCGTGATTCCGGTAGCAACCTTCTTGCATTGATCAATTTTTCCGAAAGTGTGCAAGAGTATGAATGATATTGAAACTATATTCCAAAGTAGAATCTACTAGTAAGTAGCTGCATGTAGTTATTGACCTAATAAATCCGACCTGACAGCTTAAAATTTGCCTTTATGCAACTAGTGATATGTGTGTTGACTGCTGTATCACGATGTACATGTACACTTGCGACTTACGAGCCTATGAAAACGAAAATGGAAGTTGAGAAAAGGAGTGAGAAACATGGATATGTAGTATGTTCCCCTTGTCGTTTCCTCCCCACTGCCATCACCCCTTCTGTTTCCCCCTCTATTATTTATGAATATTAGTACTTCTCTGATCAGAATGCTAATACATACGTCCTATGTTTCTTTTATGGCAATAGAGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGAC</genome_strand>
        <mrna_strand>AAGTAGTCTCCCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAATCGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTCCCTGAGAGATAAAAATG.........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAATGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACGAGGGTTGTTGATGAGGACAAGTATCCCCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGGTGAGGAACTGCTTCATCAGAGGATCGGTGGTGAGATACGTGCAGTTACCTCCGGATGGAGTTGACATAGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTAAATTCTAGAGTTCGAAATTGGTCTATTCACATTTCAGCGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGCAGTGATTTTCTTCATCATCTTAAAATTTAGTATGCAGGTGTTATGAATACCCATAATGTGAAAACTGTGGATATGAAATCTGTCTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308218" ref_strand="+" ref_description="SGN-E308218 [cLEY-14-J20]">
      <seq>cctttcagctgtacgacgcacttccacctccggcgaagtcgaaatatagctgccaaggattacagagaacacagtgtgatacttcctgagagataaaaatgttgtttttctcatacttcaaggatctggtgggcagggaagtgactgtcgaactgaagaacgatttggctattcgaggaacactacattcagttgatcagtatctcaacattaagcttgaaaacactagggttgttgatgaggacaagtatccccacatgaggtccgtgaggaactgcttcatcagaggatcggtggtcagatacgtgcagttacctcctgatggagttgacattgaactgcttcatgatgctacgaggagagaagctcggggtggctgaattctagagttcgaaattggtctgttcacatttcagtggataagtcagcagcagtatactgatttttcttactggatgcattttgcgcgtagaggttttcttcatcatcttaaaatttagtatgcagatgttatgaatgcccgtaatgtgaaaattgttgatatgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40885" stop="35233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40585" g_stop="40541" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39270" g_stop="39215" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="101" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38997" g_stop="38839" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="260" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35823" g_stop="35533" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="551" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E308218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40585" e_stop="40541"/>
          <exon e_start="39270" e_stop="39215"/>
          <exon e_start="38997" e_stop="38839"/>
          <exon e_start="35823" e_stop="35533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTGCGACTGTTCTGCGACTTTTTTTCAATTTTTGGTTGCTGCCAGTCTGCCACTGCTTGTAAGTTCTCTTCTTCTTCTTCTTCTCTTCTTCTCTGCGTGGCTGCTGCGTCTGATCCTTTTGTGATTTAATTATGTTTTTGCTTTATATGTTATGACTTATGAGGATTCTTGACTATCTATTTACTTTTAATCTAATAATATATTACCTCTATTCAGTTATTTAATATTTTTTTTATTTTTATACTATATATGCTTTACTTAAAAAAAGCTCGCGCTTCGCTTCTGTGAAGCGAGCCCTCGTCGCTTTTTTCCGCTTCTTTCTTCCCAAAACACTGGTTGGGGGCGAGTTCGAGGTGGTAAGGGGGTTAAGGGAGATGATGGGTAGAGAGTAGGGTCTCGGAGTATAGGGATGTTGACGAGGAAATCCATAGAGCTTTTGAGGATTCTCGAGAAGTGGAGGGTAACTTGTGCATGCTTTGATATCTGCATATCTCACCTCCAAATCCCTCATATATTATGAGCTTTAATAATATCTCACAGTTTTTTTTGAAGCAGATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATGGTACTGCTACCTGATCCCTCTTTCTTAATGCTGTAGCCTGTATGTTCCTCTTTATACACGCCTAATTTGTATATAATTGGTGTCTGCTTTGTTTTTTTCGATTGGTCTTGAATAGAAAGTTTATTTACTGATCACTTCTGATTTGAGTTTTTTTCTCATGAATTTGTTTGGTCTATGTTCTAACTTGGTTTTCCCCCTGGCCTTCTGTGTTTTCCAGTTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATGGTAATTCCTCATTCTTTCTCTTGTATCTTTGTTCTTCGTATTTTCTGTTGTTGGCTTTATCTGTGAAAATATGGTTTATTACCTATATTTAGTTTGAAGATGCATTGCATCTTGCCTCTCTTTCACCTTCTCTTTTTATGTGTATACGATCTGTTGAAAACCTCTGTTTTTGGCTCTTCCTTTCTCAATTCAAGAATTCTTGAATTAGTTGTTTATGCTTTTGTAGTATGCAATAAAACAAGTGGATATTTTCTCTTCCATAGTACTCCGGAGTTGTGAAGCCGATAGTTTTGCTGGAAACTACTAATGTTGATTGTATATGTGAATCGAGAAGGTCAATTTGATGTATTAACTTCTGTGTTTATATGATTCTGGCAACTACTGCTCACTGTGATATGGGATCCTTAGTCTATATGGGGATGAGGTTTTCCTATCACTATGACTATGATTATTTGCGGCTTTCACCTAGAAATGTTTAAGCTCAGTGTTCTTTCATAGTTTTTGTTAGCTACGCTATGATCTGTTCACCTTTCTGTTGAATGAAGTACTAATGCTATGTAAGGAGGTCTGCCTTTACAGTCTTTGATCCTTTGGAAACTGATAATTTGTTTATTACAAGGCTAAGAAGTTGTAAGTTTGGGAATTAAATATGACTGTAGCGGTGCATTGCTGCAGAGGATCTAAAGCTTACCTTAAATAGCAGATTATTAGCATGTCCTGACCTGATAGTTGCTCATAAGTCGAGACCCTGTACTGAACCTTTGCTCTAATGCATGTGGTAGAATGAAATATGATTGTCTATGATAGCATGTGTGGAGGAATAACTCCAATAAAAATACTTGGACTTTGGAAGTCTTAGAAGGCCCATGACAAGATCTCGAATAAGAAACTTCAAAAACAAGCTCATTGTTTTTAATTGTAAAGACGAAGTGCCTAGTATTGGAAGAAGAGCTCAAGCCAAGAAAAATCTTTTGTCTTAGTGTTATAGCTTTTTTATTGGCTGAATTGAAGTCCAAGATGAGGTAGGATATGGGGTTCAAGAACCAGCCGTTGAAGGAGGTCCATATCATTTTAATTTAGGAAAAATTTAGCCACCTAAATTGTGCCAAACTTGCATCCCATGAATCTCCCACTTAGGCCACATTGTAGCCAAAATGACCCATTAGGTGTGCAAATCGATAGGAGAGTTGCTGCTCAAGTTGCTTGCAAGTTGTCTTCAAGGTTCTAAGAGTTTCCTTAATTTTAGGCACTAATTAGGGGAGCCTAGCACATGTCTCCCTTGATTTTAGGAATTACTCGAACCTTCATATTTTAGTGGGAAAATAACTAGGATAAAATATGAAATCTTTGACTAATCCCTAAAAATAGGGAAACCATGTGTTGGGCTACCTTAATTACGTAGAACCTACAATTAAAGAACATCTTGAAGATAACTTGCAAGCAACTTAAGCAACAACTCTCCTATCAATTTGTACACCTGTGTGATCCTTCTTGGATAGCAAGGAAGCTCATTTTAAGGGCTAAAATGTGCCCCAAGTGGGAGCTTTGCTAGGTGCATGTTTGGCACAATCCAGGTGCCTAAATTGGTCCAAAGTGCACTGGTTTGGACCTCCATAAAAGGCATGTTTTTCATCTTTGGCTTCAATTTGGCCCACAAAAATAGCTAGAACACTTGTGCAAAAGATCCTCTTGGCTTGAACTCTTCTCCCAAAACTAGACACTTCTTTCTTTGCAATTGAAGCCCAATTAGTTTCTTTTTGAAGTTTCTTATTTGAGATCTTGTCATAGGCCTTTTAAGAGCTTCATCAAAGTTCTTTATTGTATTTATGCTTCCGTGGCTGCTATCAGCCTTCCTCTAGATACACTACCACATGTTTTTATGGAACTCTTTGATGAAATTCTTTTGTTGTTTCAACAGGTTGAATTTGTTGTGTAGTTGCTGCCTTTTTGGTCTCACCACTTTGAACTAAAACTTATGTGATTGTGTTAATTTCCAGCATGTCACAATTCCAGTCTTATTGTCTAGGACTTCTTTTCTATCTGGTTTTCTAGAAGTACGAATTATAAATGGAGCTACAATCTCTGTCAGCCCTTATACTTTGACTAGATTCACAAATTGGAACGAGAAGCGACTATATCTAGATGATGTCAGAGAACGCAATTGGGCTTTGGCTGATTAAGCCTCACTCGCCCTGGCAAGCAAAGTCAATGGTGAACTTCATATTCCCCCTTTCACCTTTCTACTCTTTTCCCACTAAGTTGGATTCTCTCTCCTTTTGTCTTCGTGCATCGTTTTTCCTTTTCATTCACTCACCAGCCTCACCCGCTTCTGATTTAATAAGAACAGAAGTTCACCTGTTTCTCATGTCCCATGGGATGTGGTGGTACACACCCACTTCCTTGTAGTCTGTAGAGCTGGGAAAACAGATCTAGCTAGAGCTTCCACGTGATAAATTTCATAGATCTGAATTTACAAACATTAAATGAAAGAAGATGTATCATAAGAAAATGATGGTTTCTTTCCGTTCCTTGTATTTTATATGAGAAGTTATATAGACATCAACCATTCCCTATACACACTATCCCTATTCTTTTGAATATCCGTGATTCCGGTAGCAACCTTCTTGCATTGATCAATTTTTCCGAAAGTGTGCAAGAGTATGAATGATATTGAAACTATATTCCAAAGTAGAATCTACTAGTAAGTAGCTGCATGTAGTTATTGACCTAATAAATCCGACCTGACAGCTTAAAATTTGCCTTTATGCAACTAGTGATATGTGTGTTGACTGCTGTATCACGATGTACATGTACACTTGCGACTTACGAGCCTATGAAAACGAAAATGGAAGTTGAGAAAAGGAGTGAGAAACATGGATATGTAGTATGTTCCCCTTGTCGTTTCCTCCCCACTGCCATCACCCCTTCTGTTTCCCCCTCTATTATTTATGAATATTAGTACTTCTCTGATCAGAATGCTAATACATACGTCCTATGTTTCTTTTATGGCAATAGAGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCT</genome_strand>
        <mrna_strand>CCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATG.........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438949" ref_strand="+" ref_description="SGN-E438949 [cSTA-10-G14]">
      <seq>ctaaagtagtctccgcgtttcagctgtacgacgcacttccacctccggcgaaatcgaactatagctgccaaggattacagagaacacagtgtgatactccctgagagataaaaatgttgtttttctcatacttcaaggacctggtgggcagggaagtgactgtcgaactgaagaatgatttggctattcgaggaacactacattcagttgatcagtatctcaacattaagcttgaaaacacgagggttgttgatgaggacaagtatccccacatgaggtcggtgaggaactgcttcatcagaggatcggtggtgagatacgtgcaggtacctccggatggagttgacatagaactgcttcatgatgctacgaggagagaagctcggggtggctaaattctagagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40899" stop="35391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40599" g_stop="40541" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39270" g_stop="39215" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="116" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38997" g_stop="38839" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="275" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35823" g_stop="35691" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="408" r_length="133" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E438949" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40599" e_stop="40541"/>
          <exon e_start="39270" e_stop="39215"/>
          <exon e_start="38997" e_stop="38839"/>
          <exon e_start="35823" e_stop="35691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGTAGTCTAC-CCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTGCGACTGTTCTGCGACTTTTTTTCAATTTTTGGTTGCTGCCAGTCTGCCACTGCTTGTAAGTTCTCTTCTTCTTCTTCTTCTCTTCTTCTCTGCGTGGCTGCTGCGTCTGATCCTTTTGTGATTTAATTATGTTTTTGCTTTATATGTTATGACTTATGAGGATTCTTGACTATCTATTTACTTTTAATCTAATAATATATTACCTCTATTCAGTTATTTAATATTTTTTTTATTTTTATACTATATATGCTTTACTTAAAAAAAGCTCGCGCTTCGCTTCTGTGAAGCGAGCCCTCGTCGCTTTTTTCCGCTTCTTTCTTCCCAAAACACTGGTTGGGGGCGAGTTCGAGGTGGTAAGGGGGTTAAGGGAGATGATGGGTAGAGAGTAGGGTCTCGGAGTATAGGGATGTTGACGAGGAAATCCATAGAGCTTTTGAGGATTCTCGAGAAGTGGAGGGTAACTTGTGCATGCTTTGATATCTGCATATCTCACCTCCAAATCCCTCATATATTATGAGCTTTAATAATATCTCACAGTTTTTTTTGAAGCAGATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATGGTACTGCTACCTGATCCCTCTTTCTTAATGCTGTAGCCTGTATGTTCCTCTTTATACACGCCTAATTTGTATATAATTGGTGTCTGCTTTGTTTTTTTCGATTGGTCTTGAATAGAAAGTTTATTTACTGATCACTTCTGATTTGAGTTTTTTTCTCATGAATTTGTTTGGTCTATGTTCTAACTTGGTTTTCCCCCTGGCCTTCTGTGTTTTCCAGTTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATGGTAATTCCTCATTCTTTCTCTTGTATCTTTGTTCTTCGTATTTTCTGTTGTTGGCTTTATCTGTGAAAATATGGTTTATTACCTATATTTAGTTTGAAGATGCATTGCATCTTGCCTCTCTTTCACCTTCTCTTTTTATGTGTATACGATCTGTTGAAAACCTCTGTTTTTGGCTCTTCCTTTCTCAATTCAAGAATTCTTGAATTAGTTGTTTATGCTTTTGTAGTATGCAATAAAACAAGTGGATATTTTCTCTTCCATAGTACTCCGGAGTTGTGAAGCCGATAGTTTTGCTGGAAACTACTAATGTTGATTGTATATGTGAATCGAGAAGGTCAATTTGATGTATTAACTTCTGTGTTTATATGATTCTGGCAACTACTGCTCACTGTGATATGGGATCCTTAGTCTATATGGGGATGAGGTTTTCCTATCACTATGACTATGATTATTTGCGGCTTTCACCTAGAAATGTTTAAGCTCAGTGTTCTTTCATAGTTTTTGTTAGCTACGCTATGATCTGTTCACCTTTCTGTTGAATGAAGTACTAATGCTATGTAAGGAGGTCTGCCTTTACAGTCTTTGATCCTTTGGAAACTGATAATTTGTTTATTACAAGGCTAAGAAGTTGTAAGTTTGGGAATTAAATATGACTGTAGCGGTGCATTGCTGCAGAGGATCTAAAGCTTACCTTAAATAGCAGATTATTAGCATGTCCTGACCTGATAGTTGCTCATAAGTCGAGACCCTGTACTGAACCTTTGCTCTAATGCATGTGGTAGAATGAAATATGATTGTCTATGATAGCATGTGTGGAGGAATAACTCCAATAAAAATACTTGGACTTTGGAAGTCTTAGAAGGCCCATGACAAGATCTCGAATAAGAAACTTCAAAAACAAGCTCATTGTTTTTAATTGTAAAGACGAAGTGCCTAGTATTGGAAGAAGAGCTCAAGCCAAGAAAAATCTTTTGTCTTAGTGTTATAGCTTTTTTATTGGCTGAATTGAAGTCCAAGATGAGGTAGGATATGGGGTTCAAGAACCAGCCGTTGAAGGAGGTCCATATCATTTTAATTTAGGAAAAATTTAGCCACCTAAATTGTGCCAAACTTGCATCCCATGAATCTCCCACTTAGGCCACATTGTAGCCAAAATGACCCATTAGGTGTGCAAATCGATAGGAGAGTTGCTGCTCAAGTTGCTTGCAAGTTGTCTTCAAGGTTCTAAGAGTTTCCTTAATTTTAGGCACTAATTAGGGGAGCCTAGCACATGTCTCCCTTGATTTTAGGAATTACTCGAACCTTCATATTTTAGTGGGAAAATAACTAGGATAAAATATGAAATCTTTGACTAATCCCTAAAAATAGGGAAACCATGTGTTGGGCTACCTTAATTACGTAGAACCTACAATTAAAGAACATCTTGAAGATAACTTGCAAGCAACTTAAGCAACAACTCTCCTATCAATTTGTACACCTGTGTGATCCTTCTTGGATAGCAAGGAAGCTCATTTTAAGGGCTAAAATGTGCCCCAAGTGGGAGCTTTGCTAGGTGCATGTTTGGCACAATCCAGGTGCCTAAATTGGTCCAAAGTGCACTGGTTTGGACCTCCATAAAAGGCATGTTTTTCATCTTTGGCTTCAATTTGGCCCACAAAAATAGCTAGAACACTTGTGCAAAAGATCCTCTTGGCTTGAACTCTTCTCCCAAAACTAGACACTTCTTTCTTTGCAATTGAAGCCCAATTAGTTTCTTTTTGAAGTTTCTTATTTGAGATCTTGTCATAGGCCTTTTAAGAGCTTCATCAAAGTTCTTTATTGTATTTATGCTTCCGTGGCTGCTATCAGCCTTCCTCTAGATACACTACCACATGTTTTTATGGAACTCTTTGATGAAATTCTTTTGTTGTTTCAACAGGTTGAATTTGTTGTGTAGTTGCTGCCTTTTTGGTCTCACCACTTTGAACTAAAACTTATGTGATTGTGTTAATTTCCAGCATGTCACAATTCCAGTCTTATTGTCTAGGACTTCTTTTCTATCTGGTTTTCTAGAAGTACGAATTATAAATGGAGCTACAATCTCTGTCAGCCCTTATACTTTGACTAGATTCACAAATTGGAACGAGAAGCGACTATATCTAGATGATGTCAGAGAACGCAATTGGGCTTTGGCTGATTAAGCCTCACTCGCCCTGGCAAGCAAAGTCAATGGTGAACTTCATATTCCCCCTTTCACCTTTCTACTCTTTTCCCACTAAGTTGGATTCTCTCTCCTTTTGTCTTCGTGCATCGTTTTTCCTTTTCATTCACTCACCAGCCTCACCCGCTTCTGATTTAATAAGAACAGAAGTTCACCTGTTTCTCATGTCCCATGGGATGTGGTGGTACACACCCACTTCCTTGTAGTCTGTAGAGCTGGGAAAACAGATCTAGCTAGAGCTTCCACGTGATAAATTTCATAGATCTGAATTTACAAACATTAAATGAAAGAAGATGTATCATAAGAAAATGATGGTTTCTTTCCGTTCCTTGTATTTTATATGAGAAGTTATATAGACATCAACCATTCCCTATACACACTATCCCTATTCTTTTGAATATCCGTGATTCCGGTAGCAACCTTCTTGCATTGATCAATTTTTCCGAAAGTGTGCAAGAGTATGAATGATATTGAAACTATATTCCAAAGTAGAATCTACTAGTAAGTAGCTGCATGTAGTTATTGACCTAATAAATCCGACCTGACAGCTTAAAATTTGCCTTTATGCAACTAGTGATATGTGTGTTGACTGCTGTATCACGATGTACATGTACACTTGCGACTTACGAGCCTATGAAAACGAAAATGGAAGTTGAGAAAAGGAGTGAGAAACATGGATATGTAGTATGTTCCCCTTGTCGTTTCCTCCCCACTGCCATCACCCCTTCTGTTTCCCCCTCTATTATTTATGAATATTAGTACTTCTCTGATCAGAATGCTAATACATACGTCCTATGTTTCTTTTATGGCAATAGAGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCG</genome_strand>
        <mrna_strand>CTAAAGTAGTCTCCGCGTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAATCGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTCCCTGAGAGATAAAAATG.........................................................................................................................................................................................................................TTGTTTTTCTCATACTTCAAGGACCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAATGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACGAGGGTTGTTGATGAGGACAAGTATCCCCACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGGTGAGGAACTGCTTCATCAGAGGATCGGTGGTGAGATACGTGCAGGTACCTCCGGATGGAGTTGACATAGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTAAATTCTAGAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333265" ref_strand="+" ref_description="SGN-E333265 [cTOD-20-P10]">
      <seq>gcagctaaagtagtctaccctttcagctgtacgacgcacttccacctccggcgaagtcgaaatgtaagttctcctctttagatatctctgtaacgaaaaaaaaaaccctaattcttccttctaatagtactgaatttcgttttttgttgccatgttttgtactgctacgcactataaacagatccttgaattcgatttctcatgttcctttgtggtttttgtttgtcgtcttatgtaatggattgctttttaagttgtgatggtgtgtattatgctggaaatgattaagttttgttgatatttaggattaggagaaacaaataagtccgtgcgatgtttttttctctcttcgtttttgttgttattttccagaatttgggattgtagtaagtgaaaagctacagttgatttcatttcctaatcagccgaaagaagtatttgaataatattccaaatgggatattaaggtgtgtatagtgtgctattgagttttagtttatagattgggggcagttttataaaaagcgaggaaaaccgcacttaaagcgcgacgcgaggcgaagcacagcccctgcgcttttatttcctgaagcacggcgacattgaaaaagaaaagcgaaagcgtgaaatagcgctaattacgggttttttgggtttaaaaaatgtttttncttttaatttctggaatccttaggcgacttcacataccactttcgcgatttcaagtttgttttttggactgctgcgaccgctgctataaagtctcttcttctcttcttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40903" stop="39523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40603" g_stop="39823" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E333265" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40603" e_stop="39823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTAC-GGTTTTTT-GGTTTAAAAAATGTTTTT-CTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTG</genome_strand>
        <mrna_strand>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGGTTTTTTGGGTTTAAAAAATGTTTTTNCTTTTAATTTCTGGAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAAGTCTCTTCTTCTCTTCTTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333266" ref_strand="+" ref_description="SGN-E333266 [cTOD-20-P14]">
      <seq>gcagctaaagtagtctaccctttcagctgtacgacgcacttccacctccggcgaagtcgaaatgtaagttctcctctttagatatctctgtaacgaaaaaaaaaaccctaattcttccttctaatagtactgaatttcgttttttgttgccatgttttgtactgctacgcactataaacagatccttgaattcgatttctcatgttcctttgtggtttttgtttgtcgtcttatgtaatggattgctttttaagttgtgatggtgtgtattatgctggaaatgattaagttttgttgatatttaggattaggagaaacaaataagtccgtgcgatgtttttttctctcttcgtttttgttgttattttccagaatttgggattgtagtaagtgaaaagctacagttgatttcatttcctaatcagccgaaagaagtatttgaataatattccaaatgggatattaaggtgtgtatagtgtgctattgagttttagtttatagattgggggcagttttataaaaagcgaggaaaaccgcacttaaagcgcgacgcgaggcgaagcacagcccctgcgcttttatttcctgaagcacggcgacattgaaaaagaaaagcgaaagcgtgaaatagcgctaattacggttttttggtttaaaaatgtttttcttttaatttctgaaatccttaggcgacttcacataccactttcgcgatttcaagtttgttttttggactgctgcgaccgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40903" stop="39552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40603" g_stop="39852" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E333266" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40603" e_stop="39852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGC</genome_strand>
        <mrna_strand>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTT-AAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333432" ref_strand="+" ref_description="SGN-E333432 [cTOD-20-P12]">
      <seq>gcagctaaagtagtctaccctttcagctgtacgacgcacttccacctccggcgaagtcgaaatgtaagttctcctctttagatatctctgtaacgaaaaaaaaaaccctaattcttccttctaatagtactgaatttcgttttttgttgccatgttttgtactgctacgcactataaacagatccttgaattcgatttctcatgttcctttgtggtttttgtttgtcgtcttatgtaatggattgctttttaagttgtgatggtgtgtattatgctggaaatgattaagttttgttgatatttaggattaggagaaacaaataagtccgtgcgatgtttttttctctcttcgtttttgttgttattttccagaatttgggattgtagtaagtgaaaagctacagttgatttcatttcctaatcagccgaaagaagtatttgaataatattccaaatgggatattaaggtgtgtatagtgtgctattgagttttagtttatagattgggggcagttttataaaaagcgaggaaaaccgcacttaaagcgcgacgcgaggcgaagcacagcccctgcgcttttatttcctgaagcacggcgacattgaaaaagaaaagcgaaagcgtgaaatagcgctaattacggtttttttggtttaaaaaatgtttttcttttaatttctgaaatccttaggcgacttcacataccactttcgcgatttcaagtttgttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="40903" stop="39569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40603" g_stop="39869" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E333432" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40603" e_stop="39869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGG-TTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGG</genome_strand>
        <mrna_strand>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429931" ref_strand="-" ref_description="SGN-E429931 [STM-52-J18]">
      <seq>attcatttcatgtactgggacgtactgccggacatggaagaactcacagggtgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctttgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggttttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcaccaacaagctagggaatgggcttgtccttgacggcggtgatttcaatggtcgacgcgtgaaacaaagattgtagttgaagttgtaacttcatgatgcaggctgtagtttgacatagatgtaaatttgggtctgtcagtgtcattgctattgttgtaatcatctatatattatcttgttcctagtaaaagtttatttgtgtatggttcgtgctacttgagggtcttgatagacagcttctaactctttgttcataaggttctcttttacttccttcagttatttatttgttaatttggcccttgatttttcagctgaacatgtaatttatttgctttatttggtgtattgtcatcaaatatttaattaggtctgcagaaanaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="42867" stop="40711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42568" g_stop="42298" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41467" g_stop="41013" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="701" r_length="431" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E429931" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429931" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42568" e_stop="42298"/>
          <exon e_start="41467" e_stop="41013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCCGTCAGTGTCATTGATATTGTTGTAATCATCTATATAATTACCTTGTTCCTAGT-AATGTTTATTTGTGTATGGTTATTGTGCTACTTGAGGGTCGTCTTGATTAGACAGCTTCTAACTCTTTGTCCATAATATTTCCTTCTGTTATTTTGGTTCTCTGTATTTCATTCAGTTATTTATTTGTTATTTTGGCTCTTGATTTTTCAGTTGAACATGTAATT</genome_strand>
        <mrna_strand>ATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGG-TGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTTTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGTTTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCTGTCAGTGTCATTGCTATTGTTGTAATCATCTATAT-ATTATCTTGTTCCTAGTAAAAGTTTATTTGTGTATGG-T-TCGTGCTACTTGA-GG--GTCTTGA-TAGACAGCTTCTAACTCTTTGTTCATAA-GGTT-C-TC------------T-T-T-TACTTCCTTCAGTTATTTATTTGTTAATTTGGCCCTTGATTTTTCAGCTGAACATGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432248" ref_strand="-" ref_description="SGN-E432248 [STM-56-D8]">
      <seq>tgcaaggtcacctgtgttcagagcacaactttttggtcccatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctctgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggatttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcaccaacaagctagggaatgggcttgtccttgacggcggtgatttcaatggtcgacgcgtgaaacaaagattgtagttgaagttgtaacttcatgatgcaggctgtagtttgacatagatgtaaatttgggtctgtcagtgtcattgctattgttgtaatcatctatatattatcttgttcctagtaatgtttatttgtgtatggttcgtgctacttgagggtcttgttgatagacagcttctaactctttgttcatgaggatctcttttacttctttcagaaaaaggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44074" stop="40802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43774" g_stop="43675" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="377" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41101" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="740" r_length="363" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E432248" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43774" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCCGTCAGTGTCATTGATATTGTTGTAATCATCTATATAATTACCTTGTTCCTAGTAATGTTTATTTGTGTATGGTTATTGTGCTACTTGAGGGTCGTCTTGATTAGACAGCTTCTAACTCTTTGTCCATAAT</genome_strand>
        <mrna_strand>TGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCCATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGATTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCTGTCAGTGTCATTGCTATTGTTGTAATCATCTATAT-ATTATCTTGTTCCTAGTAATGTTTATTTGTGTATGG-T-TCGTGCTACTTGAGGGTCTTGTTGA-TAGACAGCTTCTAACTCTTTGTTCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546783" ref_strand="+" ref_description="SGN-E546783 [TUS-70-F6](-)">
      <seq>tcatttcatgtactgggatgtgctgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctctgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaacggatggttttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattccagcatcaccaacaagctagggaatgggcttgtccttgacggcggtgatttcaatggtcgacgcgtgaaacaaagattgtagttgaagttgtaacttcatgatgcaggctgtagtttgacatagatgtaaatttgggtccgtcagtgtcattgatattgttgtaatcatctatataattaccttgttcctattaatgtttatttgtgtatggttattgtgctacttgagggtcttgattagacagcttctaactctttgtccataaggtttctctttatttccttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="42866" stop="40788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42566" g_stop="42298" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41467" g_stop="41101" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="633" r_length="364" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="663"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E546783" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42566" e_stop="42298"/>
          <exon e_start="41467" e_stop="41101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCCGTCAGTGTCATTGATATTGTTGTAATCATCTATATAATTACCTTGTTCCTAGTAATGTTTATTTGTGTATGGTTATTGTGCTACTTGAGGGTCGTCTTGATTAGACAGCTTCTAACTCTTTGTCCATAAT</genome_strand>
        <mrna_strand>TCATTTCATGTACTGGGATGTGCTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCCGTCAGTGTCATTGATATTGTTGTAATCATCTATATAATTACCTTGTTCCTATTAATGTTTATTTGTGTATGGTTATTGTGCTACTTGA-GG--GTCTTGATTAGACAGCTTCTAACTCTTTGTCCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615300" ref_strand="+" ref_description="SGN-E615300 [65097]">
      <seq>agcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctttgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggttttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcaccaacaagctagggaatgggcttgtccttgacggcggtgatttcaatggtcgacgcgtgaaacaaagattgtagttgaagttgtaacttcatgatgcaggctgtagtttgacatagatgtaaatttgggtctgtcagtgtcattgctattgttgtaatcatctatatattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44015" stop="40888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43715" g_stop="43675" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="318" r_length="277" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41188" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="597" r_length="279" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E615300" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43715" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCCGTCAGTGTCATTGATATTGTTGTAATCATCTATATAATTACCT</genome_strand>
        <mrna_strand>AGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTTTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGTTTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCTGTCAGTGTCATTGCTATTGTTGTAATCATCTATAT-ATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429930" ref_strand="+" ref_description="SGN-E429930 [STM-52-J18]">
      <seq>gtgaggtctcacaccgaaggacctaaaacttactccatccctctatctccatcagatattggactgcattttggacagctcctcgaaagtgggaaggatactgatgtgaatttcgacgttaatggagaggtatttgctgctcacaaattgatacttgctgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctttgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggttttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcaccaacaagctagggaatgggcttgtccttgacggcggtgattttcatggtcgacgcgtgaaacaaagattgtagttgaagttgtaacttcatgatgcaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44232" stop="40961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43932" g_stop="43675" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="535" r_length="277" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41261" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="742" r_length="207" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E429930" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43932" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCT</genome_strand>
        <mrna_strand>GTGAGGTCTCACACCGAAGGACCTAAAACTTACTCCATCCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTCCTCGAAAGTGGGAAGGATACTGATGTGAATTTCGACGTTAATGGAGAGGTATTTGCTGCTCACAAATTGATACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTTTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGTTTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGACGGCGGTGATTTTCATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458497" ref_strand="+" ref_description="SGN-E458497 [cPRO-5-N8]">
      <seq>gtgaggtctcacaccgaaggacctaaaacttactccatccctctatctccatcagatattggactgcattttggacagctcctcgaaagtgggaaggatactgatgtgaatttcgacgttaatggagaggtatttgctgctcacaaattgatacttgctgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctttgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgagatctgtctgtctcagatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggttttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcaccaacaagctagggaatgggcttgtccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44232" stop="41032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43932" g_stop="43675" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="535" r_length="277" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41332" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="671" r_length="136" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E458497" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43932" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGA</genome_strand>
        <mrna_strand>GTGAGGTCTCACACCGAAGGACCTAAAACTTACTCCATCCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTCCTCGAAAGTGGGAAGGATACTGATGTGAATTTCGACGTTAATGGAGAGGTATTTGCTGCTCACAAATTGATACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTTTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAGATCTGTCTGTCTCAGATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGTTTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432247" ref_strand="+" ref_description="SGN-E432247 [STM-56-D8]">
      <seq>ttgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctctgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggatttgactatctgagagaaagttgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcaccaacaagctagggaatgggcttgtccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44074" stop="41032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43775" g_stop="43675" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="378" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41332" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="514" r_length="136" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E432247" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43775" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGA</genome_strand>
        <mrna_strand>TTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGATTTGACTATCTGAGAGAAAGTTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCAACAAGCTAGGGAATGGGCTTGTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401051" ref_strand="+" ref_description="SGN-E401051 [PPC-2-N18]">
      <seq>tgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctctgtgaggctaacctgtgtgaggaagttgctattaatactgttgcaaccactttagccctggctgaacagcaccattgtttccagctgaaatctgtctgtctcaaatttgttgccatgccagaaaatctaagagctgtaatgcaaactgatggatttgactatctgagagaaaggtgtcctcatgtcctcacagaactgttggagtatgttgctagggtaaatgaacattctagcatcacccacaagctagggaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44074" stop="41044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43774" g_stop="43675" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="377" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41344" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="501" r_length="124" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E401051" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43774" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGG</genome_strand>
        <mrna_strand>TGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGATTTGACTATCTGAGAGAAAGGTGTCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCTAGCATCACCCACAAGCTAGGGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458326" ref_strand="+" ref_description="SGN-E458326 [cPRO-5-I16]">
      <seq>gtgaggtctcacaccgaaggacctaaaacttactccatccctctatctccatcagatattggactgcattttggacagctcctcgaaagtgggaaggatactgatgtgaatttcgacgttaatggagaggtatttgctgctcacaaattgatacttgctgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgagacgtactgccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatgggttagataggctcaggttgctttgtgagggctacctgtgtgaggaagttgctattaatactggtgcaaccactttagccctggctgaacagcaccattagttccagctgagatctgtctgtctcaaatttgtgacatgccagaaatctaagagctgtaatgcaaactgatggttttgactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44232" stop="41137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43932" g_stop="43675" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42298" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="533" r_length="275" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41467" g_stop="41437" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="564" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E458326" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43932" e_stop="43675"/>
          <exon e_start="42574" e_stop="42298"/>
          <exon e_start="41467" e_stop="41437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAGGTGCTCTTTTATCTTCTAATCAACTTATGTCAAAATGTTACATCAAAGTTGGGATTCAGTTCAATTATTTGGTTCAAGTACTTAAGTTTTTGTGGTTTGTTTACATTAATAATTTTGTCACCATGATCTACAAATAATCTGTTCTAAGTATAATTCTTAAAAGATATAATTCCCCTTTTAAATTTTTTTCTGTAATAGATGTGTTTCATGCGTGTTTAATCTCTCTTAAGTGAAATTTTTAGAAGTTCTGATCGCAATTTCAACAATTTTCTTCATGTACTGCTAAAAGAATTGTCCCTAAGTTGAACTTGGAAGGGGAGATGTCTGCCTACCGTTGCAGTCTATATTTAGTAAGCCCTTAAATGAGACATTATTGTTTGTCCTTGTTCTAAAGGGGTTCAGCTTTAGGCCCAACAAGGAAAAAAGAGTGAAATTGGGGTTGCTACTCTACAGTTTGTTGTTGTCATTTGTCAACTGGGGGGTCATGGAATTAACTTGATTGGTCAACCTAATTGGTCTCAAGGCCATACAATACTTTCTTTCAAAGTCCATCATCACCTGCCCTCTCCCTCCATTTTCTGGGCAGCTGTTTACTGGAATTGGCTATGAGAGCTGTTTCTGATTGACCTTCATTCGCTTGTTTTGAATGTGTTGATGCCCTCCTAAAAGTGATTTTTGCTGCCAAAAGCACTGGGAAGTAAATTCACATGTGGGGGAATTTCTTACTGCTGCTTTAGAAAAATTTTGTTTCCAATTTCGATGCATATGGTTGAATTGAAGCATTGCAGAAATGAAAGTGGATTTTCATCGTAGAATCCTTTTTTATGCAGCTGTAATGCAAACGGATGGTTTTGACTATCT</genome_strand>
        <mrna_strand>GTGAGGTCTCACACCGAAGGACCTAAAACTTACTCCATCCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTCCTCGAAAGTGGGAAGGATACTGATGTGAATTTCGACGTTAATGGAGAGGTATTTGCTGCTCACAAATTGATACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGAGACGTACTGCCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTTTGTGAGGGCTACCTGTGTGAGGAAGTTGCTATTAATACTGGTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTAGTTCCAGCTGAGATCTGTCTGTCTCAAATTTG-TGACATGCCAG-AAATCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATGCAAACTGATGGTTTTGACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211802" ref_strand="+" ref_description="SGN-E211802 [cLEC-66-H11]">
      <seq>attttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattttttaaaagaaccgctttagaatcatctgactacctgaaggatgattgcctgcaagttcattgctgtgttggtgtagtgaggtctcacaccgaaggacctaaaacatactccattcctctatctccatcagatattggactgcattttggacagctacttgaaagtgggaaggatactgatgtgaacttcgatgttaatggagaggtatttgctgctcacaaattggtacttgctgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagcccctgtttttaaggctcttcttcatttcatgtactgggacgtgctaccggacatggaagaactcacagggttgaacacaaaatgggcatcaaccttgatgtctcaacatctgcttgcggcagctgactgttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="46881" stop="42152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46581" g_stop="46524" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43675" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="407" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42574" g_stop="42452" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="530" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E211802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46581" e_stop="46524"/>
          <exon e_start="44023" e_stop="43675"/>
          <exon e_start="42574" e_stop="42452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGG</genome_strand>
        <mrna_strand>ATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458472" ref_strand="+" ref_description="SGN-E458472 [cPRO-5-H16]">
      <seq>gtgaggtctcacaccgaaggacctaaaacttactccatccctctatctccatcagatattggactgcattttggacagctcctcgaaagtgggaaggatactgatgtgaatttcgacgttaatggagaggtatttgctgctcacaaattgatacttgctgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagccccaatttttaaggctcttattcatttcatgtactgggacgtactggcggacatggaagaactcacaggggtgaacaccaaatgggcatccaccttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44232" stop="42188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43932" g_stop="43675" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42574" g_stop="42487" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="346" r_length="88" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E458472" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43932" e_stop="43675"/>
          <exon e_start="42574" e_stop="42487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGTGTGATCTGGCAAATTTTTCAATGCTCCATTTATTTGTTATTTTTCTGCCTCTTTCTTTCAGGCATTGACCTGATCCCTACTTTAGGCATGATCAATGTTCTTTAAAGGCTCACTCGAGGTTCTTCTTGAGGTTAGATCCAACATAAGCTACGCATTTTGCCTCCCTTTTGGTGCTATTCCAGTGTAGGCACCGAGGTGCCAGAGGCGGAGCCAGGATTTTCAATTGGGGGGGGGGGGTTTCAAAATCTGTAGAAATAGACACATGAAGTTGCCGAAGGGGGTTCAACATCTTTTTTGTATGCACATAAATTATTTTAACCATGTATAAATAATATAATTTTCCGCCGAAGGGGGTTCGTACTATATATTGGTTTGGGTGATACATCAACTCTCAATAAATTATTAAGGAGTAGGAGAATATAAATACATAAAATTTATCTTTACATTTGATTTAGAAATTCAAGTTCGGTTTTGAACTTGATTTATTATATTTGCTCACATATTATGAGTGTAGTTTTTCTAATTCCTTTTTATATAATTGTTGTTCAAGTTTACGTTTACTTTTTCCTGGCATTACATATTTATATATTTATTTTTCTTTATTTTTTTATGTCTTATGTACCCGCTTTTGATTACATGCTTTAATTAACATGCATATCTTCGGTTGTGGGTTTTCTTGTCAAAGTAAAAAAATATTGCATATCTGGCATAATCATCGAAGCTGTGTAATTTTGTTATGATATCAACAACAAGCTGTGTCGCTGAAAAGATGCCAGATAGAGAAGCCATACCTGGAATTCATTTTGCACTAAAAATTTTTTGGTTCCAATTTTGATGTGATTCTCTCTTTTCAGTTAACATTGTGATTTAATTTTGCGTTATTTGCTCAATTCTCGTGTATGTTGATGACAGGCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGT</genome_strand>
        <mrna_strand>GTGAGGTCTCACACCGAAGGACCTAAAACTTACTCCATCCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTCCTCGAAAGTGGGAAGGATACTGATGTGAATTTCGACGTTAATGGAGAGGTATTTGCTGCTCACAAATTGATACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTCATTTCATGTACTGGGACGTACTGGCGGACATGGAAGAACTCACAGGGGTGAACACCAAATGGGCATCCACCTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542271" ref_strand="+" ref_description="SGN-E542271 [TUS-63-H23](-)">
      <seq>tgtcgaaagggattgggattgggaagtatatcgcttctgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacatatgtgtcgttgttcattgctctagcgagcgaaggaacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccattttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattttttaaaagaaccgctttagaatcatctgactacctgaaggatgattgcctgcaagttcattgctgtgttggtgtagtgaggtctcacaccgaaggacctaaaacatactccattcctctatctccatcagatattggactgcattttggacagctacttgaaagtgggaaggatactgatgtgaacttcgatgttaatggagaggtatttgctgctcacaaattggtacttgctgcaaggtcacctgtgttcagagcacaacttttttggtccaatgaaggatcaaaatacagagcatataaaagtagaagacatggaagcccctgtttttaaggtcaaagccttgtactacctcccacccctttcctgcctttatgttgatttgactgcttgttgtgtactatcaataacacaatctgtaagttttcaagtcaccacctgttaataatctggaaagctatgctactaccgaacttctaattcttctattctctcagttgtcattgcttcttctatcaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47106" stop="43189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46806" g_stop="46524" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43487" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="821" r_length="538" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="838"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E542271" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46806" e_stop="46524"/>
          <exon e_start="44023" e_stop="43487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAAC-TTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGT</genome_strand>
        <mrna_strand>TGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322577" ref_strand="+" ref_description="SGN-E322577 [cTOB-26-L14]">
      <seq>tagcatagctttccagattattaacaggtggtgacttgaaaacttacagattgtgttattgatagtacacaacaagcagtcaaatcaacataaaggcaggaaaggggtgggaggtagtacaaggctttgaccttaaaaacaggggcttccatgtcttctacttttatatgctctgtattttgatccttcattggaccaaaaagttgtgctctgaacacaggtgaccttgcagcaagtaccaatttgtgagcagcaaatacctctccattaacatcgaagttcacatcagtatccttcccactttcaagtagctgtccaaaatgcagtccaatatctgatggagatagaggaatggagtatgttttaggtccttcggtgtgagacctcactacaccaacacagcaatgaacttgcaggcaatcatccttcaggtagtcagatgattctacagcggttcttttaaaaaatcgcttatatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="43244" stop="44324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43544" g_stop="44024" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E322577" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43544" e_stop="44024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCATAGCTTTCCAGATTATTAACAGGTGGTGACTTGAAAACTTACAGATTGTGTTATTGATAGTACACAACAAGCAGTCAAATCAACATAAAGGCAGGAAAGGGGTGGGAGGTAGTACAAGGCTTTGACCTTAAAAACAGGGGCTTCCATGTCTTCTACTTTTATATGCTCTGTATTTTGATCCTTCATTGGACCAAAAAGTTGTGCTCTGAACACAGGTGACCTTGCAGCAAGTACCAATTTGTGAGCAGCAAATACCTCTCCATTAACATCGAAGTTCACATCAGTATCCTTCCCACTTTCAAGTAGCTGTCCAAAATGCAGTCCAATATCTGATGGAGATAGAGGAATGGAGTATGTTTTAGGTCCTTCGGTGTGAGACCTCACTACACCAACACAGCAATGAACTTGCAGGCAATCATCCTTCAGGTAGTCAGATGATTCTAAAGCGGTTCTTTTAAAAAATCGCTTATATCCCC</genome_strand>
        <mrna_strand>TAGCATAGCTTTCCAGATTATTAACAGGTGGTGACTTGAAAACTTACAGATTGTGTTATTGATAGTACACAACAAGCAGTCAAATCAACATAAAGGCAGGAAAGGGGTGGGAGGTAGTACAAGGCTTTGACCTTAAAAACAGGGGCTTCCATGTCTTCTACTTTTATATGCTCTGTATTTTGATCCTTCATTGGACCAAAAAGTTGTGCTCTGAACACAGGTGACCTTGCAGCAAGTACCAATTTGTGAGCAGCAAATACCTCTCCATTAACATCGAAGTTCACATCAGTATCCTTCCCACTTTCAAGTAGCTGTCCAAAATGCAGTCCAATATCTGATGGAGATAGAGGAATGGAGTATGTTTTAGGTCCTTCGGTGTGAGACCTCACTACACCAACACAGCAATGAACTTGCAGGCAATCATCCTTCAGGTAGTCAGATGATTCTACAGCGGTTCTTTTAAAAAATCGCTTATATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458265" ref_strand="+" ref_description="SGN-E458265 [cPRO-5-M19]">
      <seq>gtgaggtctcacaccgaaggacctaaaacttactccatccctctatctccatcagatattggactgcattttggacagctcctcgaaagtgggaaggatactgatgtgaatttcgacgttaatggagaggtatttgctgctcacaaattgatacttgctgcaaggtcacctgtgttcagagcacaactttttggtccaatgaaggatccaaatacagagcatattaaagtagaagacatggaagccccaatttttaagggtcttattcatttcatgtactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="44232" stop="43353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43932" g_stop="43675" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E458265" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43932" e_stop="43675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAG</genome_strand>
        <mrna_strand>GTGAGGTCTCACACCGAAGGACCTAAAACTTACTCCATCCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTCCTCGAAAGTGGGAAGGATACTGATGTGAATTTCGACGTTAATGGAGAGGTATTTGCTGCTCACAAATTGATACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCCAAATACAGAGCATATTAAAGTAGAAGACATGGAAGCCCCAATTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483544" ref_strand="+" ref_description="SGN-E483544 [cSTE-9-J6]">
      <seq>gataattcaacgtatgtgtcgttgtttattgctctaaccatcgaagggacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccattttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagctgattctttaaaagaactgctttacaatcatcagactacctgaaggatgattgccttcaagttcattgctgggttggtgtagtgaggtctcacaccgaaggaactaaaacttactccatccctctatttccatcagatattggactgcattttggacagctcctcgaaagtgggaaggatactgatgtgaatttcgacgttaatggagaggtatttgctgctcacaaattgatacttgctgcaaagtcacctgtgttcaaagcacaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47002" stop="43441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46702" g_stop="46524" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43741" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="463" r_length="284" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E483544" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46702" e_stop="46524"/>
          <exon e_start="44023" e_stop="43741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGC-GATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTT</genome_strand>
        <mrna_strand>GATAATTCAACGTATGTGTCGTTGTTTATTGCTCTAACCATCGAAGGGACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCTGATTCTTTAAAAGAACTGCTTTACAATCATCAGACTACCTGAAGGATGATTGCCTTCAAGTTCATTGCTGGGTTGGTGTAGTGAGGTCTCACACCGAAGGAACTAAAACTTACTCCATCCCTCTATTTCCATCAGATATTGGACTGCATTTTGGACAGCTCCTCGAAAGTGGGAAGGATACTGATGTGAATTTCGACGTTAATGGAGAGGTATTTGCTGCTCACAAATTGATACTTGCTGCAAAGTCACCTGTGTTCAAAGCACAACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546784" ref_strand="+" ref_description="SGN-E546784 [TUS-70-F6]">
      <seq>ctgatccacatttctgaattacctcagtttgaaaaaaaattgactgattgaggtggttatcgttgaaattttcacgtatggtggacatgggaagggttgaaacagaggcaattgccaaaccctcctcatcgtcctcatcttcatcatcatctgcggtgaccacgtcaacatcggtgactgagacggtgaatggttctcatgattttaagattactgggtattcgttgtcgaaagggattgggattgggaagtatatcgcttctgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacatatgtgtcgttgtttattgctctagcgagcgaaggaacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccattttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattttttaaaagaaccgctttagaatcatctgactacctgaaggatgattgcctgcaagttcattgctgtgttggtgtagtgaggtctcacaccgaaggacctaaaacatactccattcctctatctccatcagatattggactgcattttggacagctacttgaaagtgggaaggatactgatgtgaacttcgatgttaatggagaggtatttgctgctcacaaattggtacttgctgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47334" stop="43469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47034" g_stop="46524" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43769" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="763" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E546784" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47034" e_stop="46524"/>
          <exon e_start="44023" e_stop="43769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAG</genome_strand>
        <mrna_strand>CTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTTATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482792" ref_strand="+" ref_description="SGN-E482792 [cSTE-5-I16]">
      <seq>cgaaaccctagaaaattccacaacccctaatttacagagcctagattccatctccaccgtagaaatctaccatcaatttcgccgataaaccccaattccctaccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaatttacctcaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggcaattgccaaaccctcctcatcgtcctcatcttcatcatcatctgcggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtgtcgttgtttattgctctagccagcgaagggacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccattttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattctttaaagaactgctttagaatcatcagactacctgaaggatgattgccttcagttcattgctgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47484" stop="43640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47184" g_stop="46524" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43940" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="744" r_length="82" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E482792" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47184" e_stop="46524"/>
          <exon e_start="44023" e_stop="43940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCCTAGAAAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATC---T-GATCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGT</genome_strand>
        <mrna_strand>CGAAACCCTAGAAAATTCCACAACCCCTAATTTACAGAGCCTAGATTCCATCTCCACCGTAGAAATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTACCTCAATTAG-AAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTGCGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTGTCGTTGTTTATTGCTCTAGCCAGCGAAGGGACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCGATTCTTT-AAAGAACTGCTTTAGAATCATCAGACTACCTGAAGGATGATTGCCTTC-AGTTCATTGCTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542274" ref_strand="+" ref_description="SGN-E542274 [TUS-63-H23]">
      <seq>aaattccacaaccccaaatttacagagcctagattccatctccatcgtagaaatctcccatcaatttcgccgataaaccccaattccctaccctaacgtagctcatttcctacaaatttctctttctaaaccctagatctgatccacatttctgaattacctcagtttgaaaaaaaattgactgattgaggtggttattgttgaaattttcacgtatggtggacatgggaagggttgaaacagaggcaattgccaaaccctcctcatcgtcctcatcttcatcatcatcatctgcggtgaccacgtcaacatcggtgactgagacggtgaatggttctcatgattttaagattactgggtattcgttgtcgaaagggattgggattgggaagtatatcgcttctgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacatatgtgtcgttgttcattgctctagcgagcgaaggaacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccatttttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattttttaaaagaccgctttagatcatctgactacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47472" stop="43672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47172" g_stop="46524" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43972" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="700" r_length="50" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E542274" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47172" e_stop="46524"/>
          <exon e_start="44023" e_stop="43972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCA-TTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTG</genome_strand>
        <mrna_strand>AAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCGATTTTTTAAAAG-ACCGCTTTAG-ATCATCTGACTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446904" ref_strand="+" ref_description="SGN-E446904 [cSTA-23-O14]">
      <seq>acgaaaccctagaaaattctcacaacccctaatttacagagcctagattccatctccaccgtagaaatctaccatcaatttcgccgataaaccccaattccctaccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaatttacctcaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggcaattgccaaaccctcctcatcgtcctcatcttcatcatcatctgcggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtgtcgttgtttattgctctagccagcgaagggacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccattttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattctttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47485" stop="43702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47185" g_stop="46524" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="44002" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="686" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E446904" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47185" e_stop="46524"/>
          <exon e_start="44023" e_stop="44002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACCCTAGAAAATTC-CACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATC---T-GATCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTGGTGAGTTTCATGTACTATAACACTGCTTGTTTTGTTGGTTTATGATTTTCCCTGACACCACGATCCTTTCCCGGTGAGACTCGATAAATTGGTTAGTTTACTCCTTGTTTGGTGGTCAGTTTCCCGACCTCAATTCGTTCTCATTAAGGAAGTAAGCAAGAATTGCTCATATATAATATTCTTGTAAGTAGAAAAGATTAAATAACAATGTGACGTTCTCTTGTGCCATAATAATGGATAAATTCATCAATTTCTAGGAATAACACTTTCCTATGTTTAGATGACATTTCACTGCAGTGGACATGCTAAAATGTGATGTTGTAGCTTTGGCTCAATCAAAATGTAGCTAGCAACAACAATAACATACCCCAATGTAATTAGACCTCACCTGGTCACCCCTCCCACCTTCCTGAAGTAGAAAAGCTGTTTCCAATAGATCCTTAGCTGAAAAAAAATGTAGTTGACAAACTTAAATACGAATTGTTAATGAGTTGAAAATTTTATGTATATGATATTTTATTGATCCATTGGCAAATATTTACTAGATATTAAAATATTAGATTTGGAGAATTAGTCACTTAATGTGAATTACATGTTAGAACAAACTATATATATAACTAGTAGTAATTACATAGATCGAGAACACACCTACATATTATATTGAAAATGCAACAAGGAGGTGCGTACTTTTATGTGCCATAGTCATAACTGACACCTTATGGGAATGCATCTTAGGTTAAGTTCGGAAAGGGGACCTAACCTCATATTTATAGGCTTAAAAGCCTAAATTTAGTATTTATTGGCTTAAAAGCCTTAATTTAGTGTGCCTCCCATGATGCAACTCACTAGTTTTCAACAGCCTTACACTATTGCAAGCCCACACATATGACATGAAATGGGCACAGGCCCATATGGAATCCACACAAATACACAACTTGTGATTGTCCAACAATTATTAACATTCAACCCATTTTACTAAAAGATAATAAGTTAATGTTAAGTTCACATTGAATAAATAATCCTAACATTCTCTCAATTGGACAACATTAACCTATTATTACATTTTAGTTAAACGAGTTGAATGATAGTAGTTGTTGGACAGGACGCATACTGTGTTTTTTGTGTGGATTCTAAAGGGGCTTGTATCCATTTCATGTCATATGTGTGGACTGTCAATAGTGTAAGCCAGTTGAAATCGAGTCCGTAATGGGTAGGCATACTAGTTAAGGCGTTTAAGCCTATAAATATGAGGTTAGGTCCCCTCTTCGGGCTTAACCTGGGGCTCATTCCCATCACAAGTTCATTGGTCTTCAATAGTCCTACACTATTGCTATCCCACATACATGGCATGAAAGGGATATAGGCCCGTATGGAATCCACACAAATATACAGTGTGTATCTTGTCCTACACCTACTAACATTCAGCCCGGTTTACTAAAGCGTAACAATAATTTAATATTAACTCCACATTTAAGAAATGATTCTAACATTACAAACTTATAATTTTTTAATAATTGAATCACAATTTTAGCTTCATTTTTTGAACTTGGTTTACAAATTCTTACTTCACATGCTTGTCCAATGAAATATCGTCTGTTCCTTTTTGCTCATGGTTATTTCCTTGCATATACATATGCTCTCTCTTTTTTTTTTCATCTGGCCTTTTTATTGGTTGAAGAATCACCCTTTGATTGTGCTTTCTGCTTAAATCTCAATAAACGTTGATACATTTCTTAGGCATTTTTGGTTTGGCTACACCTTTCTAAACAATCCATGTGTTTTACTGATCATATTCTTTCCTCACTGACTTGAGAATTTTCCTTCCTTTTCATTTTTCCGTTTTGATTTTATGTGACACAAAATTGAAGATTTTATGTATATGGGTGTATAATATATATATAAATATAAATATATATATATATATATATATATTTATTTATTTATTTATAGTAATGAAATGGCCAAAATGCTTACTTTTTCCTATGTGCTCAGCTCAAAGTTAGACTCTTGAAGATTTTCTAGTACTGGCTAGTGACACCTACTCTGCCTCTTTCAAATATATGGGATTGTGTTGTGATACACTTGTGCTTTTGTGACAACTGAGTGTTTTAATCATGTCTTTATTTATAGATTTGCTGAACTTTACTATAAGAAACTGCAGACAGCGTTATCCTTGTACGACTCACTGGTCATTGTCTCCTAACCTTTACATGCTTATTCAGTCTTATCGTTTTACTTCTATTTTCATTACTCAACTTAAGAAACGGCATATTGTTTCCATATGAGCTTTTGAAATTGAAGCTTGGTGGTGGTTTTCTTGTGGATTGAAATTCTTAGCTAGAATTTTGCATTTCAGTCTTAATACCAGAATGTTCACTAGCGAGATTTGACTTAAAAAGTTCTTAATTCACATCTTAACTTCTCTAGCCATGTTTGGAACGTTTCTTTTACTCAACACGCAGCTTGTAATAATCTACATGACCGAATTTGGGTTTTGCAGGGGATATAAGCGATTTTTTAAA</genome_strand>
        <mrna_strand>ACGAAACCCTAGAAAATTCTCACAACCCCTAATTTACAGAGCCTAGATTCCATCTCCACCGTAGAAATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTACCTCAATTAG-AAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTGCGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTGTCGTTGTTTATTGCTCTAGCCAGCGAAGGGACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATAAGCGATTCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444429" ref_strand="+" ref_description="SGN-E444429 [cSTA-42-L4]">
      <seq>ctcatttcctacaaatttctctttctaaacccctagatctgatcgatccacatttctgaattttccccaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggtaattgccaaaccctcctcatcgtcctcatcttcatcatcatctacggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgataccgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtgtcgttgtttattgctctagccaccgaagggacggatgtgagggcgctttttgagctgacgctgattgatcagagtggtaagagtaggcataaagtgcatagccattttgggagagcgttggagagtggaccgtacactcttaaataccgtggaagcatgtggggatataagcgattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47371" stop="46214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47071" g_stop="46524" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E444429" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47071" e_stop="46524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTCCTACAAATTTCTCTTTCTAAA-CCCTAGATCTGA----TCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATA-CGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG</genome_strand>
        <mrna_strand>CTCATTTCCTACAAATTTCTCTTTCTAAACCCCTAGATCTGATCGATCCACATTTCTGAATTTTCCCCAATTAGAAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGTAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTACGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACCGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTGTCGTTGTTTATTGCTCTAGCCACCGAAGGGACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588228" ref_strand="+" ref_description="SGN-E588228 [41776]">
      <seq>atttacagagcctaggattccatctccaccgtagaaatctaccatcaatttcgccgataaaccccaattccctgccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaattttccccaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggtaattgccaaagcctcctcatcgtcctcatcttcatcatcatctacggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtgtcgttgtttattgctctagacagcgaatggacggatgtgagggcgcttattgagctgaagctgattgatcagagtggtagagtaggcataaagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47455" stop="46286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47155" g_stop="46586" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E588228" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47155" e_stop="46586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAGAGCCTA-GATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGA----TCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCAT</genome_strand>
        <mrna_strand>ATTTACAGAGCCTAGGATTCCATCTCCACCGTAGAAATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTGCCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTTCCCCAATTAG-AAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGTAATTGCCAAAGCCTCCTCATCGTCCTCATC-T--TCATCATCATCTACGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTGTCGTTGTTTATTGCTCTAGACAGCGAATGGACGGATGTGAGGGCGCTTATTGAGCTGAAGCTGATTGATCAGAGTGGT-AGAGTAGGCATAAAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300177" ref_strand="+" ref_description="SGN-E300177 [cLEW-17-E9]">
      <seq>aattccacaaccccaaatttacagagcctagattccatctccatcgtagaaatctcccatcaatttcgccgataaaccccaattccctaccctaacgtagctcatttcctacaaatttctctttctaaaccctagatctgatccacatttctgaattacctcagtttgaaaaaaaattgactgattgaggtggttattgttgaaattttcacgtatggtggacatgggaagggttgaaacagaggcaattgccaaaccctcctcatcgtcctcatcttcatcatcatcatctgcggtgaccacgtcaacatcggtgactgagacggtgaatggttctcatgattttaagattactgggtattcgttgtcgaaagggattgggattgggaagtatatcgcttctgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacatatgtgtcgttgttcattgctctagcgagcgaaggaacggatgtgagggcgctttttgagctgacgctgattgatcagagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47471" stop="46309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47171" g_stop="46609" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E300177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47171" e_stop="46609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTG</genome_strand>
        <mrna_strand>AATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446497" ref_strand="+" ref_description="SGN-E446497 [cSTA-21-J13]">
      <seq>aatttacagagcctagattccatctccaccgtagaggatctaccatcaatttcgccgataaaccccaattccctgccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaattttccccaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggtaattgccaaaccctcctcatcgtcctcatcttcatcatcatctacggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtgtcgttgtttattgctctagccagcgaagggacggatgtgagggcgctttttgagctgacgctgattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47456" stop="46315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47156" g_stop="46615" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E446497" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47156" e_stop="46615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTACAGAGCCTAGATTCCATCTCCATCGTAGA-AATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGA----TCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATC</genome_strand>
        <mrna_strand>AATTTACAGAGCCTAGATTCCATCTCCACCGTAGAGGATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTGCCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTTCCCCAATTAG-AAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGTAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTACGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTGTCGTTGTTTATTGCTCTAGCCAGCGAAGGGACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444433" ref_strand="+" ref_description="SGN-E444433 [cSTA-42-L14]">
      <seq>ccacatttttgaattttccccacttctaaaaaaattgactgattgaggtggttatcgttgaaatttgcacatatggtggacatgggaagggttgaaacagaggtaattgccaaaccctcctcatagtcctcatcttcatcatcatctacggtgaccacatcaacatctgtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgactaaagggattgggattgggaagtacataacttccgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtgccgttgtttattgctctagccagctaagggacggatgtgagggcgctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47306" stop="46333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47029" g_stop="46633" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E444433" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47029" e_stop="46633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTG</genome_strand>
        <mrna_strand>CCACATTTTTGAATTTTCCCCACTTCTAAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACATATGGTGGACATGGGAAGGGTTGAAACAGAGGTAATTGCCAAACCCTCCTCATAGTCCTCATC-T--TCATCATCATCTACGGTGACCACATCAACATCTGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGACTAAAGGGATTGGGATTGGGAAGTACATAACTTCCGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTGCCGTTGTTTATTGCTCTAGCCAGCTAAGGGACGGATGTGAGGGCGCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446895" ref_strand="+" ref_description="SGN-E446895 [cSTA-23-M6]">
      <seq>accaaaccctagtaaattccacaacccctaatttacagagcctagattccatctccaccgtagaaatctaccatcaatttcgccgataaaccccaattccctaccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaatttacctcaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggcaattgccaaaccctcctcatcgtcctcatcttcatcatcatctgcggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgatacgtttatggtaggtgggtatacgtgggcgatttatttctatcctgatgggaagagtactgaagataattcaacgtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47485" stop="46385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47185" g_stop="46685" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E446895" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47185" e_stop="46685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACCCTAGAAAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATC---T-GATCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTG</genome_strand>
        <mrna_strand>ACCAAACCCTAGTAAATTCCACAACCCCTAATTTACAGAGCCTAGATTCCATCTCCACCGTAGAAATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTACCTCAATTAG-AAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTGCGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACGTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442300" ref_strand="+" ref_description="SGN-E442300 [cSTA-32-N5]">
      <seq>aatttacagagcctagattccatctccaccgtagaaatctaccatcaatttcgccgataaaccccaattccctgccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaattttccccaattagaaaaaaattgactgattgaggtggttatcgttgaaatttgcacgtatggtggacatgggaagggttgaaacagaggtaattgccaaaccctcctcatcgtcctcatcttcatcatcatctacggtgaccacatcaacatcggtgacggagacggtgaatggctctcatgattttaagattaatgggtattcgttgtctaaagggattgggattgggaagtacatcacttccgatacgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47456" stop="46459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47156" g_stop="46759" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E442300" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47156" e_stop="46759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGA----TCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTA</genome_strand>
        <mrna_strand>AATTTACAGAGCCTAGATTCCATCTCCACCGTAGAAATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTGCCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTTCCCCAATTAG-AAAAAAATTGACTGATTGAGGTGGTTATCGTTGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGTAATTGCCAAACCCTCCTCATCGTCCTCATC-T--TCATCATCATCTACGGTGACCACATCAACATCGGTGACGGAGACGGTGAATGGCTCTCATGATTTTAAGATTAATGGGTATTCGTTGTCTAAAGGGATTGGGATTGGGAAGTACATCACTTCCGATACGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442440" ref_strand="+" ref_description="SGN-E442440 [cSTA-33-B15]">
      <seq>cggcacgaggacgaaaccctagaaaattccacaacccctaatttacagagcctagattccatctccaccgtagaaatctaccatcaatttcgccgataaaccccaattccctaccctaacgcagctcatttcctacaaatttctctttctaaaccctagatctgatcgatccacatttctgaatttacctcaattagaaaaaaattgactgattgaggtgggtatcgacgaaatttgcacgtatggtggacatgggaagggttgaaacagaggcaattgccagaccctcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="47485" stop="46607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47183" g_stop="46907" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="293" r_length="281" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E442440" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47183" e_stop="46907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAGAAAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATC---T-GATCCACATTTCTGAA-TTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCA</genome_strand>
        <mrna_strand>GAAACCCTAGAAAATTCCACAACCCCTAATTTACAGAGCCTAGATTCCATCTCCACCGTAGAAATCTACCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGCAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCGATCCACATTTCTGAATTTACCTCAATTAG-AAAAAAATTGACTGATTGAGGTGGGTATCGACGAAATTTGCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAGACCCTCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51467" stop="50421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51167" g_stop="50721" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51167" e_stop="50721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGCATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATATAATTCTCTCTCGCTTTATACAAAACATAAACA-AAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGAAGAGACACG-CTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51468" stop="50573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51168" g_stop="50847" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51168" e_stop="50847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGCATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATATAATTCTCTCTCGCTTTATACAAAACATAAACA-AAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51468" stop="32787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51168" g_stop="50863" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51168" e_stop="50863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGCATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATATAATTCTCTCTCGCTTTATACAAAACATAAACAAAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250150" ref_strand="+" ref_description="SGN-E250150 [cLEG-11-E21]">
      <seq>tgcaccacaaatctaagaagaatccaaaaacatagaaagttgaaagctttaattttgtcaagattcaagaatccaaccaaaaagatgtaacccctaatttctgaagggccattaagttttgtaaaccaccaaattgcaataaaatctagggaacttaaggtgaatagcaggataagcccctgatgctgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51777" stop="54589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52077" g_stop="52420" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="525" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54289" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="611" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E250150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52077" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCACAAATCTAAGAAGAATCCAAAAACATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCT</genome_strand>
        <mrna_strand>TGCACCACAAATCTAAGAAGAATCCAAAAACATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745799" ref_strand="+" ref_description="SGN-E745799 [GI|47105071]">
      <seq>gatagaaagttgaaagctttaattttgtcaagattcaagaatccaaccaaaaagatgtaacccctaatttctgaagggccattaagttttgtaaaccaccaaattgcaataaaatctagggaacttaaggtgaatagcaggataagcccctgatgctgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattgagatgaaggacatactttcaattatctccgagttctacttctcaaaggactcaatgaaatgcacaaagcatgcaatggtggttccgtactttgacaggaagacatgcaagacaaagtccaaaggtgaaagttctgctcagaaacttgacgtgaatgcatcatctctacggagtcctcagaaaactaagtaccagacatcacctcagagaaagagcaacaagagagcagttaaagagagtgagatctacaggaacaattacctccatgcatgtgaaagccttctgtccataatagttgacaagaaacggcatggaaaaactgcgatactttcattgaagaaatcgggtccccaactaccaaattttctgaccacgttctctgctaccatcgctggaactggcatagccgtccttttctcaattgcctgcagactagcctgtggaagaatcgtgttctctgcacctagactattgaacactggtttaggccttggacttatatggctctcttgggctgtcaataatttgagggacacagttgtggtgatcaacagaagttcaggcaagttggatatgatagaagatgacatgatgaataatttggacaaaaatgtgaaggaaatctacttcagagcagcaactttgctggcagtcgtagtgctgaggcttgcttgatttcaagaacacaagatttagagattgtaaaaacatgcacagctcgggggatgatatcaatagctcgttttgggacattcaactgtaatatagtatttgagcagaaagaactggattttttcacagcacgaaacatgtagtgagtaacaaagtttcaagccctttctactcgtctagtttgttttgtagcggagtcttgtataatgatgtgcacgagagtttccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51808" stop="58078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52107" g_stop="52420" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="495" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54651" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="943" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54652" i_stop="56324" i_length="1673">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56325" g_stop="56399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1018" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56400" i_stop="57050" i_length="651">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57051" g_stop="57778" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1019" r_stop="1746" r_length="728" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1747" polyA_stop="1759"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E745799" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1746</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52107" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54651"/>
          <exon e_start="56325" e_stop="56399"/>
          <exon e_start="57051" e_stop="57778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAGGTAGCAATAATTTCTTTGCTTGAATTCTGCTCTTTTAAGTTTTTGTTGAGTAGATGTGACAAGTGTTTTCTTGTTCATGTGGTTTATCTTATTGAAAATAAAAGCTTTTCTCTTCTGTATTGATTCTCCTCTGTGAACAGATGTAGCCCATAAAAGCTTTCTTTCTGGCTTGCAGCACCATAGGTTTGATGTGATTCGAATATAGAGATATCATAGCTAAATTATTATTTTTCTTTCTTGAATAATTTGGTACCTCAGTTGAAGTGAGTTAGTGCCTTGTCTCTCAGATGCTACTAGAAGGTGACTAAATGTGTGGGCTAGATATAAGAGCAACATGATAACGGTTATCACTGATGAGGACTAGATTGAGAAGCGATTAAATAGTTAAAATGAAGCCTCTACTATTATGAACAGGTAAATGCTTGGTATAGTTGCATATTATCTGAAGGTATAAGTACAACGATGCAATCAAGACCTAAGTAGCCAGATGGGCATGGGAAAAGAGGATGCATAGACAGCGATTTTCCAAAGGAGTGTAGAAAAATCCTAGTTCGGAAGTACAAAAACACTAGTTCATTTCTTCCCATATGTCCTAGCCTTGGTGGACACAATTACCTTGTTACTGATGTTGTGGAGGCGACATGTATCTAGTGGAATTAGTCAAGGCGTGCGCAAGCAGGCCCTGACACCACAATTATCAAAACAAAGAAAGAAAGTGAAGTGATATCCTAATTCAGTTGGAACCCCTAGAAAACCAAGGTTTTCATAACAGGTAAAAAATAAGCATCTTAGCATGTAACAGTTAGTAATTGTTGCTGGTGGGAAGCGACATTTATCTAGTGGAATTAGTCTAGGTGCATGTGTTTATTAAAAAAAAACCTTGTTTAGAAGTGAAGTGATATCCTAATTTGGTTAGAAGCCCTAGAAACCATGGTTTTCATATCAGGTCAAAATAGACATCTTTTTTTTTTTTTGAGACAAGTACTGTTCTGATCCTATGGGAAAGGGTACCATGCTCAAATACCCTGGTTTACATCCTTTTACTCTGAGCTGTAACAGTGTCCAGGCCTTCCGCCTGTATGGTTGGCATTGGTAGATGCTTCTTGTGTGCCTATATGGGGAAGAGATGTAGGAGGTGTTTTCTAGTTGTTACTATCTACATGTTAATGTAATGTAACCAGATTAAGCTTGGTTTATCATGGCGATGAGCCAGCATCATAATTGTCAAGGATTTCTTAGCTTCTATTGGTTCGAACCATTTAGAGTGGTGAGATTAGGATATTATGCTTCAGAATCTGTACGTGATAGCACAAAGGATGATCAAGTTTGGGAGATTGGGGATGTCGCAAATTGGTACCGGGGTGAGCAACAGCTCTTCTGCCTCTTTCACCTGGGCTAAAGGGAAGTCATGCTAAATCGTGTATTCCAGATTGATACTTCTGTATACTAGAAATAGGTGAGTTACTGACTGACGAATTTAGCTATTGATCCAAACTATAGAGTTTTGCTCAGAACCATATTCTTCTTCATTAATTGAGACAGTGTGTAATCATAGTGCCACTAAAATCATCCAGCATGTTAATTTCCCTGTCTGTTAATACTGAAAAGAATGTGTGTGTTTGATAAAGTGATCACAGCCCCTCAAGGTTTAAGTCAAGTCATCCTTTGTGCAGGAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAGGTATCAAATTCATCTCATATTCCCTTTATTCATGCTCTTTGTTCTCTTGGCTTCATTTTTCGTATAACGATTTCTATGACATGGAAATATTATCCAAAGATACATTTGATCTGTGCTTTGAAGTTTGACTTTTTTTTTTTTTGAATATTTTCAATGATTATTTGACTGGGTAGCAGAATAAGTTAAACATGCAACTAGGATATATTTAGCTAAATAAGGCAATTCGACAAAGCAAGTAGATTTTATTACTATGGGGAGTAAACAAGGAAGCAATCGCATAGCTGAATGTATGATCCATGTTTCCCATATCTAGGATAAGTAGTTCACTTCTCAGGTCTGAGGTTTTGCCTTTGTATACTCTGTCGTAGTTTTCTTTAGCGAACAGTTGTAGCTGTTTCTCTATTTGACATGTCTATTAAAACCATGATGATAAATTCCATGTATCTGCTTGAAGTATTCATATACTTGGTGCACATTATGAAGAGGGAAATGAACAAAGGTTTACTGTAATCAGCTTATTTTATAGGCGGAAAGAAATCTCAACTTTCAAGTGTAATAGCCCATCCATTGCATGAGCTCTAATCTCGTGTAATTTCTAGTTTAGACCACCACAGAATTAATCCTCTCTCAAACGTTTACGCTTTTTGACAGTCCTCAGAAAACTAAGTACCAGACATCACCTCAGAGAAAGAGCAACAAGAGAGCAGTTAAAGAGAGTGAGATCTACAGGAACAATTACCTCCATGCATGTGAAAGCCTTCTGTCCATAATAGTTGACAAGAAACGGCATGGAAAAACTGCGATACTTTCATTGAAGAAATCGGGTCCCCAACTACCAAATTTTCTGACCACGTTCTCTGCTACCATCGCTGGAACTGGCATAGCCGTCCTTTTCTCAATTGCCTGCAGACTAGCCTGTGGAAGAATCGTGTTCTCTGCACCTAGACTATTGAACACTGGTTTAGGCCTTGGACTTATATGGCTCTCTTGGGCTGTCAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAA</genome_strand>
        <mrna_strand>GATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAGAAAACTAAGTACCAGACATCACCTCAGAGAAAGAGCAACAAGAGAGCAGTTAAAGAGAGTGAGATCTACAGGAACAATTACCTCCATGCATGTGAAAGCCTTCTGTCCATAATAGTTGACAAGAAACGGCATGGAAAAACTGCGATACTTTCATTGAAGAAATCGGGTCCCCAACTACCAAATTTTCTGACCACGTTCTCTGCTACCATCGCTGGAACTGGCATAGCCGTCCTTTTCTCAATTGCCTGCAGACTAGCCTGTGGAAGAATCGTGTTCTCTGCACCTAGACTATTGAACACTGGTTTAGGCCTTGGACTTATATGGCTCTCTTGGGCTGTCAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462904" ref_strand="+" ref_description="SGN-E462904 [cPRO-13-E11]">
      <seq>gtctagattcaagaatccaaccaaaaagatgtaacccctaatttctcaagggtcattaagtttgtaaaccaccaaattgcaataaaatcttagggaacttgaggtgaatagcaggataagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggcaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcaattgaactcggtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaacgatgtagaaagcggtgaaatagatatatctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacagtctcatgatgctatgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51833" stop="54729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52133" g_stop="52420" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="469" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54426" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="692" r_length="223" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E462904" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52133" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATC-TAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCC</genome_strand>
        <mrna_strand>GTCTAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTCAAGGGTCATTAAG-TTTGTAAACCACCAAATTGCAATAAAATCTTAGGGAACTTGAGGTGAATAGCAGGATAAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGCAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCAATTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAACGATGTAGAAAGCGGTGAAATAGATATATCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAGTCTCATGATGCTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709397" ref_strand="+" ref_description="SGN-E709397 [FA51DB06]">
      <seq>tcaagattcaagaatccaaccaaaaagatgtaacccctaatttctgaagggccattaagttttgtaaaccaccaaattgcaataaaatctagggaacttaaggtgaatagcaggataagcccctgatgctgtgactatcaataaaccaaccataaagaagacatttttgggtcagaaactcaagtttctgagttgggtttctctcaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatacccttcctttttttcctactcctggagtgaatcaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51834" stop="53912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52134" g_stop="52420" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53612" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="330" r_length="43" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E709397" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52134" e_stop="52420"/>
          <exon e_start="53570" e_stop="53612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATA</genome_strand>
        <mrna_strand>TCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGACATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTCAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCCTTCCTTTTTTTCCTACTCCTGGAGTGAATCAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307311" ref_strand="+" ref_description="SGN-E307311 [cLEY-12-J5]">
      <seq>taacccctaatttttgaagggccattaagttttgtaaaccaccagggttgcaataaaatctagggaacttaaggtgaatagcaggataagcccctgatgctgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51864" stop="54653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52164" g_stop="52420" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="439" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54353" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="589" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E307311" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52164" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCA-AATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCAC</genome_strand>
        <mrna_strand>TAACCCCTAATTTTTGAAGGGCCATTAAGTTTTGTAAACCACCAGGGTTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400066" ref_strand="+" ref_description="SGN-E400066 [cSTC-4-J11]">
      <seq>agggtcattaagtttgtaaaccaccaaattgcaataaaatcttagggaacttgaggtgaatagcaagataagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggcaatccctttgtcaggatcctatcaaccgcttaaggaccagaactcatatatacactagacgatcaattgaactcggtgctcttgagctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51881" stop="54537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52181" g_stop="52420" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="421" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.86"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54237" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="455" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E400066" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52181" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATC-TAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGG</genome_strand>
        <mrna_strand>AGGGTCATTAAG-TTTGTAAACCACCAAATTGCAATAAAATCTTAGGGAACTTGAGGTGAATAGCAAGATAAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGCAATCCCTTTGTCAGGATCCTATCAACCGCTTAAGGACCAGAACTCATATATACACTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCAATTGAACTCGGTGCTCTTGAGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400068" ref_strand="+" ref_description="SGN-E400068 [cSTC-4-J21]">
      <seq>agggtcattaagtgtgtaaaccaccaaattgcaataaaatcttatggaacttgaggtgaatatcaagataagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaagttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggcaatccctttgtcaagatcctatcaaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51881" stop="54022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52181" g_stop="52420" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53722" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="393" r_length="153" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E400068" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52181" e_stop="52420"/>
          <exon e_start="53570" e_stop="53722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATC-TAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCT</genome_strand>
        <mrna_strand>AGGGTCATTAAG-TGTGTAAACCACCAAATTGCAATAAAATCTTATGGAACTTGAGGTGAATATCAAGATAAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAAGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGCAATCCCTTTGTCAAGATCCTATCAACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700861" ref_strand="+" ref_description="SGN-E700861 [FA14BE04]">
      <seq>gtgaatagcaggataagcccctgatgctgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattgagatgaaggacatactttcaattatctccgagttctacttctcgaaggacttcatgaaatgcacaaagcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51936" stop="54927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52236" g_stop="52420" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="366" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54627" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="790" r_length="424" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E700861" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52236" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGC</genome_strand>
        <mrna_strand>GTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCGAAGGACTTCATGAAATGCACAAAGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467457" ref_strand="+" ref_description="SGN-E467457 [cSTB-49-C21]">
      <seq>tgaatagcaggataagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgcctttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggcaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcaattgaactcggtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaacgatgtagaaagcggtgaaatagatatatctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacagtctcatgatgctatgtctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcaattcaggaaaaatgattcattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51937" stop="54816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52237" g_stop="52420" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="366" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54516" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="685" r_length="319" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E467457" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52237" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGC-TTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTC--G-TG--ATG-CTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGA</genome_strand>
        <mrna_strand>TGAATAGCAGGATAAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGCAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCAATTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAACGATGTAGAAAGCGGTGAAATAGATATATCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAGTCTCATGATGCTATGTCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCAATTCAGGAAAAATGATTCATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737885" ref_strand="+" ref_description="SGN-E737885 [LC11CD02]">
      <seq>ctgcaggaattcggcacgaggtgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattgagatgaaggacatactttcaattatctccgagttctacttctcaaaggactcaatgaaatgcacaaagcatgcaatggtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51943" stop="54937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52241" g_stop="52420" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="360" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54637" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="794" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E737885" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52241" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTT</genome_strand>
        <mrna_strand>CTGCAGGA-ATTCGGCACGAGGTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448198" ref_strand="+" ref_description="SGN-E448198 [cSTS-2-C10]">
      <seq>agcaggataagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgcctttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttccaattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggaaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcacttgaactcggtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaacgatgtagaaagcggtgaaatagatatatctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacagtctcatgatgctatgtctcagccatctcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51942" stop="54739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52242" g_stop="52420" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="361" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54418" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="576" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E448198" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52242" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGC-TTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGAT</genome_strand>
        <mrna_strand>AGCAGGATAAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCAATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGAAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCACTTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAACGATGTAGAAAGCGGTGAAATAGATATATCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAGTCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476918" ref_strand="+" ref_description="SGN-E476918 [cSTB-46-F3]">
      <seq>aagcccctcatgctgtgactatcaataaatcaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttccaattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggaaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcacttgaactcggtgctcttgagctttgggattgctgaacaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51950" stop="54554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52250" g_stop="52420" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="352" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54254" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="403" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E476918" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52250" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCA</genome_strand>
        <mrna_strand>AAGCCCCTCATGCTGTGACTATCAATAAATCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCAATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGAAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCACTTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737745" ref_strand="+" ref_description="SGN-E737745 [LC11AD02]">
      <seq>cggcacgaggtgtgactatcaataaaccaaccataaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaatcatggttgaacgttgtcttatggcttctcatggttatcctccgtggcttttttcacctcctgaattgagggttttaaaggatagtcttcctttttttcctagtcctggagtgaatcaagatattgtgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcagaattctatcaacctctgaaggaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattgagatgaaggacatactttcaattatctccgagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51952" stop="54889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52251" g_stop="52420" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="349" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54589" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="735" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E737745" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52251" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTC</genome_strand>
        <mrna_strand>CGGCAC-GA-GGTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480723" ref_strand="+" ref_description="SGN-E480723 [cSTD-15-E7]">
      <seq>tgtgactactcaataaatcaaccactaaagaagagatttttgggtcagaaactcaagtttctgagttgggtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttccaattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggaaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcacttgaactcggtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaacgatgtagaaagcggtgaaatagatatatctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacagtctcatgatgctatgtctcagccatctcttgtttatccaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="51963" stop="54739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52263" g_stop="52420" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="341" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54418" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="556" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E480723" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52263" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACTA-TCAATAAACCAACCA-TAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGAT</genome_strand>
        <mrna_strand>TGTGACTACTCAATAAATCAACCACTAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCAATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGAAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCACTTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAACGATGTAGAAAGCGGTGAAATAGATATATCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAGTCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586032" ref_strand="+" ref_description="SGN-E586032 [73456]">
      <seq>gtttctcttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatattgcgaagtcaagttgtgctagcgtaaggtttaatcaaagactggatttatggaaaccgatgagtcggttattggcaggcaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatgcacgagacgatcacttgaactcagtgctcttgagctttgggattgctgaacaatgcacaagacaggagaatattttgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatatctacactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaattttcttcttatctcgaacaacagtctcatgatgctaagtctcagccatctcttgtgtatcccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcaattcaggaaaaatgattcattctgatggccgtctattagttagtggtgccacctgctagcattgagatgaaggacattatttccaatcatctccgagttctacttctcaaaagactcatgaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="52030" stop="54917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52330" g_stop="52420" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="272" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54617" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="694" r_length="422" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E586032" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52330" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTC--G-TG--ATG-CTCAGCCATCTCTTGTTTAT-CCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCA-CTGCTAGCATTGAGATGAAGGACA-TACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCA</genome_strand>
        <mrna_strand>GTTTCTCTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATATTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAATCAAAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCACTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGACAGGAGAATATTTTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATATCTACACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTTCTTCTTATCTCGAACAACAGTCTCATGATGCTAAGTCTCAGCCATCTCTTGTGTATCCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCAATTCAGGAAAAATGATTCATTCTGATGGCCGTCTATTAGTTAGTGGTGCCACCTGCTAGCATTGAGATGAAGGACATTATTTCCAATCATCTCCGAGTTCTACTTCTCAAAAGACTC-ATGAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475792" ref_strand="+" ref_description="SGN-E475792 [cSTB-41-F18]">
      <seq>cttaaacatggttgaacgttgtcttatggcttctcatggttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttcctattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggcaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcaattgaactcggtgctcttgagctttgggattgctgaacaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="52036" stop="54554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52336" g_stop="52420" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149">
            <donor d_prob="0.920" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="266" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54204" g_stop="54254" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="317" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E475792" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52336" e_stop="52420"/>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAGGTAACTCTTTTATGAACTCGATATTTACTTGTTGATTGATTAGATGATGGGGTTTTATTTATTTTCATGTCTTTTGTGTCAATTTTTACTTGTTTTGATGGTCATAGTTTAGTTTTGTGTTGTTTTGTTTTTACTGGAAATTCTGGGCTTTACTGGTAAATGGGGTTCAATTATTATGGTATGGGATAGAATAATATCATTATTTTCTTAAAAAAAAAAAAGAAAAAAAAGAGAAGAAGCAAGATTTGATCATGTAGTCTGATCTAGATGATAGTTCCATTGTTGCTGATGAACGTTGTGAGATTATATTGTCATTCTAATTTGGAGGTGCAGTGATCAGCATCTATATATTAAAACAGACCTCGAAGCTGATTAGGCCTACTATAGGTTGTTCCCTTTTTCTACCTGAATTATCACCGTGTATGTATATTAAAAAACACACATAGTTAAGTAGATGATAATAGTTCAAGTAGGATTAGGTCTTAAATGATAGATGGCCTAATCAGCATTGAGGTGTGTTTTTAATACATAGATGGTGATAGTTCAGGTGTGAAAAGGGAATAACTTGCACCTCAGGTGTACTCGTGAAAAAGTGTCGGTTCAAGTGTTTTTTTTTTAACCATAAACTCTGTAGACATACATATAATTTGAGTGCTACTTGTTTATATGCTGGTTTTGCTCTTTGTCTGATTCCAGAATATGCTAAGATATTAGAAATGAAAAGATCAGTTGTGCTAATTAATATCTTCCTTGCTTCGTACAAGCCTGGAGCATATTCTAATATATTGTTGGATTATCCGACTTGAAAAGGAACACATCTCATACTTATCATCTTGTTGTCCTATAATAGAAGCATATTCTTTGCAATTAGAGATGTGTTATTTGCATTAGACTTGCAACTTTTTTTTGTGGATTTGCTTTAATTTTGAGATATCAAGTGACATGCACCTAAGATATCTTAGGTGTTACAATCTTATATCTCCGCGTATTTAAGCCCTGCTTCAGATATTTGTTGTTCCCTGTTATTTAAAGAATTGTCAAGTTGTCTGACAATTGATGAGCAGTTTATCACTTTAGTAGTATACTCTGATCTTTAACTTCAAGTGATCGTAGACCCACTTAAATGGTATGCTTTCTTTTTATTTGCAGGATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCA</genome_strand>
        <mrna_strand>CTTAAACATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCTTGCCTTTTTTCACCTCCAGAATTGAAGGTTTTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCTTCCTTTTTTTCCTATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGCAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCAATTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410353" ref_strand="+" ref_description="SGN-E410353 [PPI-16-F2]">
      <seq>gttatcctccttgccttttttcacctccagaattgaaggttttaaaggatagtcttcctttttttccaattcctggagtgaatcaagatactgcgaagtcaagttgtgctagcgtaaggtttaaccagagactggatttatggaaaccgatgagtcgtttattggcaggaaatccctttgtcaggatcctatcaaccgctgaaggaccagaactcatagatacacgagacgatcacttgaactcggtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaacgatgtagaaagcggtgaaatagatatatctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacagtctcatgatgctatgtctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcaattcaggaaaaatgattcattctgatggccgtctattaataagtggtgccagtgctagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="53263" stop="54854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53570" g_stop="53750" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="228" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54204" g_stop="54554" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="585" r_length="357" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E410353" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53570" e_stop="53750"/>
          <exon e_start="54204" e_stop="54554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTC--G-TG--ATG-CTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTG</genome_strand>
        <mrna_strand>GATAGTCTTCCTTTTTTTCCAATTCCTGGAGTGAATCAAGATACTGCGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGTTTATTGGCAGGAAATCCCTTTGTCAGGATCCTATCAACCGCTGAAGGACCAGAACTCATAGATACACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCACTTGAACTCGGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAACGATGTAGAAAGCGGTGAAATAGATATATCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAGTCTCATGATGCTATGTCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCAATTCAGGAAAAATGATTCATTCTGATGGCCGTCTATTAATAAGTGGTGCCAGTGCTAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297946" ref_strand="+" ref_description="SGN-E297946 [cLET-38-H7]">
      <seq>gaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattgagatgaaggacatactttcaattatctccgagttctacttctcaaaggactcaatgaaatgcacaaagcatgcaatggtggttccgtactttgacaggaagacatgcaagacaaagtccaaaggtgaaagttctgctcagaaacttgacgtgaatgcatcatctctacggagtcctcagaaaactaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="53427" stop="57369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53727" g_stop="53750" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54204" g_stop="54651" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="472" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54652" i_stop="56324" i_length="1673">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56325" g_stop="56399" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="547" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56400" i_stop="57050" i_length="651">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57051" g_stop="57069" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="566" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E297946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53727" e_stop="53750"/>
          <exon e_start="54204" e_stop="54651"/>
          <exon e_start="56325" e_stop="56399"/>
          <exon e_start="57051" e_stop="57069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAGGTAGCAATAATTTCTTTGCTTGAATTCTGCTCTTTTAAGTTTTTGTTGAGTAGATGTGACAAGTGTTTTCTTGTTCATGTGGTTTATCTTATTGAAAATAAAAGCTTTTCTCTTCTGTATTGATTCTCCTCTGTGAACAGATGTAGCCCATAAAAGCTTTCTTTCTGGCTTGCAGCACCATAGGTTTGATGTGATTCGAATATAGAGATATCATAGCTAAATTATTATTTTTCTTTCTTGAATAATTTGGTACCTCAGTTGAAGTGAGTTAGTGCCTTGTCTCTCAGATGCTACTAGAAGGTGACTAAATGTGTGGGCTAGATATAAGAGCAACATGATAACGGTTATCACTGATGAGGACTAGATTGAGAAGCGATTAAATAGTTAAAATGAAGCCTCTACTATTATGAACAGGTAAATGCTTGGTATAGTTGCATATTATCTGAAGGTATAAGTACAACGATGCAATCAAGACCTAAGTAGCCAGATGGGCATGGGAAAAGAGGATGCATAGACAGCGATTTTCCAAAGGAGTGTAGAAAAATCCTAGTTCGGAAGTACAAAAACACTAGTTCATTTCTTCCCATATGTCCTAGCCTTGGTGGACACAATTACCTTGTTACTGATGTTGTGGAGGCGACATGTATCTAGTGGAATTAGTCAAGGCGTGCGCAAGCAGGCCCTGACACCACAATTATCAAAACAAAGAAAGAAAGTGAAGTGATATCCTAATTCAGTTGGAACCCCTAGAAAACCAAGGTTTTCATAACAGGTAAAAAATAAGCATCTTAGCATGTAACAGTTAGTAATTGTTGCTGGTGGGAAGCGACATTTATCTAGTGGAATTAGTCTAGGTGCATGTGTTTATTAAAAAAAAACCTTGTTTAGAAGTGAAGTGATATCCTAATTTGGTTAGAAGCCCTAGAAACCATGGTTTTCATATCAGGTCAAAATAGACATCTTTTTTTTTTTTTGAGACAAGTACTGTTCTGATCCTATGGGAAAGGGTACCATGCTCAAATACCCTGGTTTACATCCTTTTACTCTGAGCTGTAACAGTGTCCAGGCCTTCCGCCTGTATGGTTGGCATTGGTAGATGCTTCTTGTGTGCCTATATGGGGAAGAGATGTAGGAGGTGTTTTCTAGTTGTTACTATCTACATGTTAATGTAATGTAACCAGATTAAGCTTGGTTTATCATGGCGATGAGCCAGCATCATAATTGTCAAGGATTTCTTAGCTTCTATTGGTTCGAACCATTTAGAGTGGTGAGATTAGGATATTATGCTTCAGAATCTGTACGTGATAGCACAAAGGATGATCAAGTTTGGGAGATTGGGGATGTCGCAAATTGGTACCGGGGTGAGCAACAGCTCTTCTGCCTCTTTCACCTGGGCTAAAGGGAAGTCATGCTAAATCGTGTATTCCAGATTGATACTTCTGTATACTAGAAATAGGTGAGTTACTGACTGACGAATTTAGCTATTGATCCAAACTATAGAGTTTTGCTCAGAACCATATTCTTCTTCATTAATTGAGACAGTGTGTAATCATAGTGCCACTAAAATCATCCAGCATGTTAATTTCCCTGTCTGTTAATACTGAAAAGAATGTGTGTGTTTGATAAAGTGATCACAGCCCCTCAAGGTTTAAGTCAAGTCATCCTTTGTGCAGGAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAGGTATCAAATTCATCTCATATTCCCTTTATTCATGCTCTTTGTTCTCTTGGCTTCATTTTTCGTATAACGATTTCTATGACATGGAAATATTATCCAAAGATACATTTGATCTGTGCTTTGAAGTTTGACTTTTTTTTTTTTTGAATATTTTCAATGATTATTTGACTGGGTAGCAGAATAAGTTAAACATGCAACTAGGATATATTTAGCTAAATAAGGCAATTCGACAAAGCAAGTAGATTTTATTACTATGGGGAGTAAACAAGGAAGCAATCGCATAGCTGAATGTATGATCCATGTTTCCCATATCTAGGATAAGTAGTTCACTTCTCAGGTCTGAGGTTTTGCCTTTGTATACTCTGTCGTAGTTTTCTTTAGCGAACAGTTGTAGCTGTTTCTCTATTTGACATGTCTATTAAAACCATGATGATAAATTCCATGTATCTGCTTGAAGTATTCATATACTTGGTGCACATTATGAAGAGGGAAATGAACAAAGGTTTACTGTAATCAGCTTATTTTATAGGCGGAAAGAAATCTCAACTTTCAAGTGTAATAGCCCATCCATTGCATGAGCTCTAATCTCGTGTAATTTCTAGTTTAGACCACCACAGAATTAATCCTCTCTCAAACGTTTACGCTTTTTGACAGTCCTCAGAAAACTAAGTAC</genome_strand>
        <mrna_strand>GACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAGAAAACTAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291074" ref_strand="+" ref_description="SGN-E291074 [cLET-8-M7]">
      <seq>gaccagaactcatagatgcacgagacgatcatttgaactcagtgctcttgagctttgggattgctgaacaatgcacaaggcaggagaatattctgaagtaccttagatctggatcaaatgatgtagaaagcggtgaaatagatatagctatactctttgatctcatgggaccactggtacatgcgataaacatgcatcaacaacaatttccttcttatctcgaacaacaatctcgtgatgctcagccatctcttgtttatccaagtgctgcgctccacctatgggaaccttcttcaaatttgataggactcgattcaggaaaaatgattcattctgatggtcgtctattagttagtggtgtcactgctagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="53427" stop="54854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53727" g_stop="53750" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54204" g_stop="54554" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="375" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E291074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53727" e_stop="53750"/>
          <exon e_start="54204" e_stop="54554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGAACTCATAGATGCACGAGGTTCATAGTTCACACTACCTCAAAATTTTCCTTAAATTTTGAGTTTTAATTGCTTGATTATCTTAGATGGACCGTTACTGCTCATGAAATCTTTTATACCATGCTGATAATACCATCTAGCATGTGGTAGTCTATATGGAGAGAGAGAAACAATAAATGCTTTGAGGATATCTCTATCTCAATCCAGAAAACCAAAAGAATTGCATCATATTATGTATTTTGGTGTAATAAAGAGGGTATGGAAGAAGTTGAACGGTTAGCAGACTTTTAAGATCTTTGTAATTACAAAGATCTAAAAAAAAAAAAAGAGATCTTTGTAATTACTGCAACTTTCCACTGTTTCTTGGGCCTATGATTTTTTGGAGGTCCCCTGCATATCCTTTCTGCTGAAGAAAACAGCTTTACCTTTACCAAAATATTGTACCATGCTGATAAAGTCTTATCTTTCCGCAGACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTG</genome_strand>
        <mrna_strand>GACCAGAACTCATAGATGCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613015" ref_strand="+" ref_description="SGN-E613015 [62784]">
      <seq>acactttctgaccacgttctctgctaccattgctggaactggcatagccgtccttttctcaattgcctgcagactagcctgtggaagaatcgtcttctctgcacctagactgttgaacactggtttaggccttggacttatatggctctcttgggctgtcaataatttgagggacacagttgtggtgatcaacagaagtccaggcaagttggatatgatagaagatgacatgctgaataatttggacaaaaatgtgaagggaaatctacttcagagccgcaactttactggcagtcgtagtgctgaggcttgcttgactttcaagaacacaagatttagagactgtaaaaaccatgcacagcttgggggatgatatatcaatacgctcgttttgggacatccaactgtaatataatattggagccagaaagagatggactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="56939" stop="57972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57237" g_stop="57672" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E613015" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57237" e_stop="57672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCTGACCACGTTCTCTGCTACCATCGCTGGAACTGGCATAGCCGTCCTTTTCTCAATTGCCTGCAGACTAGCCTGTGGAAGAATCGTGTTCTCTGCACCTAGACTATTGAACACTGGTTTAGGCCTTGGACTTATATGGCTCTCTTGGGCTGTCAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAA-GGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGA-TTTCAAGAACACAAGATTTAGAGATTGTAAAAA-CATGCACAGCTCGGGGGATG--ATATCAATA-GCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAG-CAGAAAGAACTGGATTTTT</genome_strand>
        <mrna_strand>ACACTTTCTGACCACGTTCTCTGCTACCATTGCTGGAACTGGCATAGCCGTCCTTTTCTCAATTGCCTGCAGACTAGCCTGTGGAAGAATCGTCTTCTCTGCACCTAGACTGTTGAACACTGGTTTAGGCCTTGGACTTATATGGCTCTCTTGGGCTGTCAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTCCAGGCAAGTTGGATATGATAGAAGATGACATGCTGAATAATTTGGACAAAAATGTGAAGGGAAATCTACTTCAGAGCCGCAACTTTACTGGCAGTCGTAGTGCTGAGGCTTGCTTGACTTTCAAGAACACAAGATTTAGAGACTGTAAAAACCATGCACAGCTTGGGGGATGATATATCAATACGCTCGTTTTGGGACATCCAACTGTAATATAATATTGGAGCCAGAAAGAGATGGACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737343" ref_strand="+" ref_description="SGN-E737343 [LC09BG02]">
      <seq>caataatttgagggacacagttgtggtgatcaacagaagttcaggcaagttggatatgatagaagatgacatgatgaataatttggacaaaaatgtgaaggaaatctacttcagagcagcaactttgctggcagtcgtagtgctgaggcttgcttgatttcaagaacacaagatttagagattgtaaaaacatgcacagctcgggggatgatatcaatagctcgttttgggacattcaactgtaatatagtatttgagcagaaagaactggattttttcacagcacgaaacatgtagtgagtaacaaagtttcaagccctttctactcgtctagtttgttttgtagcggagtcttgtataatgatgtgcacgagagtttctaagctattcggatcttgaaaaagaattttgacattatgttcagcagcctaattttaattcattcaaacaaagttgaataattactactggccacaaaaggatacagaaccacagaaggctgtgtgctttaatggtcaagtatacatcttttccctgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="57096" stop="58241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57396" g_stop="57945" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E737343" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57396" e_stop="57945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATTATGTTCAGCAGCCTAATTTTAATTCATTCAAACAAAGTTGAATAATTACTACTGGCCACAAAAGGATACAGAACCACAGAAGGCTGTGTGCTTTAATGGTCAAGTATACATCTTTTCCCTGCTACATTAAGTCT</genome_strand>
        <mrna_strand>CAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATTATGTTCAGCAGCCTAATTTTAATTCATTCAAACAAAGTTGAATAATTACTACTGGCCACAAAAGGATACAGAACCACAGAAGGCTGTGTGCTTTAATGGTCAAGTATACATCTTTTCCCTGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739202" ref_strand="+" ref_description="SGN-E739202 [LC16CB01]">
      <seq>caataatttgagggacacagttgtggtgatcaacagaagttcaggcaagttggatatgatagaagatgacatgatgaataatttggacaaaaatgtgaaggaaatctacttcagagcagcaactttgctggcagtcgtagtgctgaggcttgcttgatttcaagaacacaagatttagagattgtaaaaacatgcacagctcgggggatgatatcaatagctcgttttgggacattcaactgtaatatagtatttgagcagaaagaactggattttttcacagcacgaaacatgtagtgagtaacaaagtttcaagccctttctactcgtctagtttgttttgtagcggagtcttgtataatgatgtgcacgagagtttctaagctattcggatcttgaaaaagaattttgacattatgttcagcagcctaattttaattcattcaaacaaagttgaataattactactggccacaaaaggatacagaaccacagaaggctgtgtgctttaatggtcaagtatacatcttttccctgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="57096" stop="58241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57396" g_stop="57945" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E739202" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57396" e_stop="57945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATTATGTTCAGCAGCCTAATTTTAATTCATTCAAACAAAGTTGAATAATTACTACTGGCCACAAAAGGATACAGAACCACAGAAGGCTGTGTGCTTTAATGGTCAAGTATACATCTTTTCCCTGCTACATTAAGTCT</genome_strand>
        <mrna_strand>CAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATTATGTTCAGCAGCCTAATTTTAATTCATTCAAACAAAGTTGAATAATTACTACTGGCCACAAAAGGATACAGAACCACAGAAGGCTGTGTGCTTTAATGGTCAAGTATACATCTTTTCCCTGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219506" ref_strand="+" ref_description="SGN-E219506 [cLEL-11-O23](-)">
      <seq>gatcaacagaagttcaggcaagttggatatgatagaagatgacatgatgaataatttggacaaaaatgtgaaggaaatctacttcagagcagcaactttgctggcagtcgtagtgctgaggcttgcttgatttcaagaacccaagatttagagattgtaaaaacatgcacagctcgggggatgatatcaatagctcgttttgggacattcaactgtaatatagtatttgagcagaaagaactggattttttcacagcacgaaacatgtagtgagtaacaaagtttcaagccctttctactcgtctagtttgttttgtagcggagtcttgtataatgatgtgcacgagagtttctaagctattcggatcctgaaaaagaattttgaaaacaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="57123" stop="58109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57423" g_stop="57808" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="408"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E219506" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57423" e_stop="57808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGAC</genome_strand>
        <mrna_strand>GATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACCCAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCCTGAAAAAGAATTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699059" ref_strand="+" ref_description="SGN-E699059 [FA08CA04]">
      <seq>tcaagaacacaagatttagagattgtaaaaacatgcacagctcgggggatgatatcaatagctcgttttgggacattcaactgtaatatagtatttgagcagaaagaactggattttttcacagcacgaaacatgtagtgagtaacaaagtttcaagccctttctactcgtctagtttgttttgtagcggagtcttgtataatgatgtgcacgagagtttctaagctattcggatcttgaaaaagaattttgacattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="57255" stop="58112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57555" g_stop="57811" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="258" polyA_stop="274"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E699059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57555" e_stop="57811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATT</genome_strand>
        <mrna_strand>TCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350606" ref_strand="+" ref_description="SGN-E350606 [cTOS-5-F20]">
      <seq>ttcaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaaatgaaaattctattgctgcttgcggaaatacaagacacgtgatggttgctaatttaatcatcatttgacatttttttatattgcaatgccaagagatgtgtcgtcgtgaaattggatatattggagaaaatagtccactctgtagcatcttatagttcataagcagtcattactttaaataatgaactttttggtgtatgaactatggtctttttttctctagcattcatgagaaactccatggtagatgctacgttatcatatgtacacaataaatcctaccatcattccgagccgtttgcttgcaaaaaaaaaaaaagaaagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="58936" stop="29130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58636" g_stop="58185" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58184" i_stop="58009" i_length="176">
            <donor d_prob="0.944" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58008" g_stop="57993" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="468" r_length="16" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E350606" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58636" e_stop="58185"/>
          <exon e_start="58008" e_stop="57993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGAGCCGTTTGCTTGCACTCCCTCAGGTATTCTGTATATGAAATGCTTCACATCTATGCACGAAATTCGGCCGTCAGTAGTGCATAATTGAGATGAACCTTGGACTTTATCTCAGATAATGTTTTTGATTTTTGTTTGTGGAGATGGGGAAATGTATTATAACAAAAAACTAAGTGTAGTACAAATCTTAGCATCTTAATTAACAAAAGGCAAAATAA</genome_strand>
        <mrna_strand>TTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGAGCCGTTTGCTTGCAAAAAAAAAA................................................................................................................................................................................AAAGAAAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419607" ref_strand="-" ref_description="SGN-E419607 [STM-29-L18]">
      <seq>aagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagcttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcagtctggttgtctcaagaggagctgacaaatgaaaattctattgcgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttatagttcataagcagttattactccaaataatgaactttttggtgtataaactatggtcttttttgcattcacgagaaactccatggtagatgctgcgtaatcatatgtacacaataaatcctactatcatttcgagctgtttgcctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60504" stop="57894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60204" g_stop="60185" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="261" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58631" g_stop="58197" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="685" r_length="424" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="697"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E419607" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419607" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60204" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGAGCCGTTTGCTT</genome_strand>
        <mrna_strand>AAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGG--TTGTCTCAAGAGGAGCTG-ACAAATGAAAATTCTATTGC-GCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAGTTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTGGTGTATAAACTATGGTC---TTTT-T-T-GCATTCACGAGAAACTCCATGGTAGATGCTGCGTAATCATATGTACACAATAAATCCTACTATCATTTCGAGCTGTTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307555" ref_strand="+" ref_description="SGN-E307555 [cLEY-24-D21]">
      <seq>aaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaaatgaaaattctattgctgcttgcggaaatacaagacacgtgatggttgctaatttaatcatcatttgacatttttttatattgcaatgccaagagatgtgtcgtcgtgaaattggatatattggagaaaatagtccactctgtagcatcttatagttcataagcagtcattactttaaataatgaactttttggtgtatgaactatggtctttttttctctagcattcatgagaaactccatggtagatgctacgttatcatatgtacacaataaatcctaccatcattccgnannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60102" stop="57909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59802" g_stop="59598" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58631" g_stop="58208" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="629" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E307555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59802" e_stop="59598"/>
          <exon e_start="58631" e_stop="58208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGA</genome_strand>
        <mrna_strand>AAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746557" ref_strand="+" ref_description="SGN-E746557 [GI|47104193]">
      <seq>cctaaacccttcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattcttcttgcccgccaggtcggtgtgccctctcttgtctgctttttaaacaaagttgatgctgttgacgatcctgagctgctggaacttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaaatgaaaattctattgctgcttgcggaaatacaagacacgtgatggttgctaatttaatcatcatttgacatttttttatattgcaatgccaagagatgtgtcgtcgtgaaattggatatattggagaaaatagtccactctgtagcatcttatagttcataagcagtcattactttaaataatgaactttttggtgtatgaactatggtctttttttctctagcattcatgagaaactccatggtagatgctacgttatcatatgtacacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64803" stop="57925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64503" g_stop="64266" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="314" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="407" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="482" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="587" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61716" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="678" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="884" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="885" r_stop="968" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="969" r_stop="1031" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="1094" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1095" r_stop="1335" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="58631" g_stop="58226" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1336" r_stop="1741" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1742" polyA_stop="1751"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E746557" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1741</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64503" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAA</genome_strand>
        <mrna_strand>CCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417661" ref_strand="-" ref_description="SGN-E417661 [STM-25-J2]">
      <seq>aaaatgtcaagatggttatgcccggtgataatgttacagctccttttgagctgatatctccagttcttcttgaaccaggacaaagatttgccctgagagagggtggccgaccagttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagatcagtttcagtctggttttgtctcaagaggagctgacatatgaaaattctattgcgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattgaagaaagtagtccagtttgtagcatcttatagttcataagcagttattactccaaataatgaactttttggtgtataaactatggtcatttgtatttcaaaaaaaaaaaaccccctttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="59975" stop="57979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59675" g_stop="59598" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58631" g_stop="58294" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="413" r_length="335" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E417661" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417661" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59675" e_stop="59598"/>
          <exon e_start="58631" e_stop="58294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATG</genome_strand>
        <mrna_strand>AAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTCCTTTTGAGCTGATATCTCCAGTTCTTCTTGAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGACCAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTG-ACATATGAAAATTCTATTGC-GCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGAAGAAAGTAGTCCAGTTTGTAGCATCTTATAGTTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTGGTGTATAAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375628" ref_strand="+" ref_description="SGN-E375628 [TUS-35-G5](-)">
      <seq>ttttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttttaaagtactgagctgagggttctgaaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaaatgaaaattctattgctgcttgcggaaatacaagacacgtgatggttgctaatttaatcatcatttgacatttttttatattgcaatgccaagagatgtgtcgtcgtgaaattggatatattggagaaaatagtccactctgtagcatcttatagttcataagcagtcattactttaaataatgaactttttggtgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61328" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61028" g_stop="61012" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="80" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="143" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="384" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58631" g_stop="58304" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="712" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="728"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E375628" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61028" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</genome_strand>
        <mrna_strand>TTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTTTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375716" ref_strand="+" ref_description="SGN-E375716 [TUS-35-G11](-)">
      <seq>tggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttttaaagtactgagctgagggttttgaaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaaatgaaaattctattgctgcttgcggaaatacaagacacgtgatggttgctaatttaatcatcatttgacatttttttatattgcaatgccaagagatgtgtcgtcgtgaaattggatatattggagaaaatagtccactctgtagcatcttatagttcataagcagtcattactttaaataatgaactttttggtgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60677" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60377" g_stop="60338" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="103" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="344" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58631" g_stop="58304" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="672" r_length="328" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="688"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E375716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60377" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</genome_strand>
        <mrna_strand>TGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTTTAAAGTACTGAGCTGAGGGTTTTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560631" ref_strand="-" ref_description="SGN-E560631 [20315]">
      <seq>tcaagaagatcttggataatggtcaanctggtgataatgtcgggcttcttctacgtggcttaaaacgagaagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagctttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcagtctggttgtctcaagaggagctgacaaatgaaaattctattgtgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttataattcataagcagttattactccaaataatgaactttttggtgtataaatgaaaataatatatgaagagtgaagattatattactgtaatatatactcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60663" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60363" g_stop="60338" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="89" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="331" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58631" g_stop="58304" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="654" r_length="323" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E560631" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560631" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60363" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGC-TTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</genome_strand>
        <mrna_strand>TCAAGAAGATCTTGGATAATGGTCAA..........................................................................................NCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTAAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGG--TTGTCTCAAGAGGAGCTG-ACAAATGAAAATTCTATTG-TGCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAATTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463314" ref_strand="+" ref_description="SGN-E463314 [cPRO-14-C2]">
      <seq>aacgagaagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagcttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcagtctggttgtctctagaggagctgacaaatgaaaattctattgcgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttatagttcataagcagttattactccaaataatgaactttttggtgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60510" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60210" g_stop="60185" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="267" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58631" g_stop="58304" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="590" r_length="323" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="604"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E463314" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60210" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</genome_strand>
        <mrna_strand>AACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGG--TTGTCTCTAGAGGAGCTG-ACAAATGAAAATTCTATTGC-GCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAGTTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463474" ref_strand="+" ref_description="SGN-E463474 [cPRO-14-B22]">
      <seq>aacgagaagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagcttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcagtctggttgtctcaagaggagctgacaaatgaaaattctattgcgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttatagttcataagcagttattactccaaataatgaactttttggtgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60510" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60210" g_stop="60185" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="267" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58631" g_stop="58304" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="590" r_length="323" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="604"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E463474" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60210" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</genome_strand>
        <mrna_strand>AACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGG--TTGTCTCAAGAGGAGCTG-ACAAATGAAAATTCTATTGC-GCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAGTTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559301" ref_strand="-" ref_description="SGN-E559301 [18776]">
      <seq>caaagcctggtagtgtgaaaacgtccaagaaatttgagccagaaatatacgtactaactaaggatgaaggtggtcggcacacagctttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtgtccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcagtctggttgtctcaagaggagctgacaaatgaaaattctattgtgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttataattcataagcagttattactccaaataatgaactttttggtgtataaaaaaaattcaaaataaggaaatatgggaaagaggaaaataaaaactcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60131" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59831" g_stop="59598" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58631" g_stop="58304" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="558" r_length="323" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E559301" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59831" e_stop="59598"/>
          <exon e_start="58631" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGC-TTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGT</genome_strand>
        <mrna_strand>CAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGCCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGTCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGG--TTGTCTCAAGAGGAGCTG-ACAAATGAAAATTCTATTG-TGCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAATTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559300" ref_strand="-" ref_description="SGN-E559300 [18775]">
      <seq>aaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaagttggtcggcacacagctttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcagtctggttgtctcaagaggagctgacaaatgaaaattctattgtgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttataattcataagcagttattactccaaataatgaactttttggctgtataaaaaatcaatttctagtgggaaataagaataataaaaaaaactcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60113" stop="57995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59813" g_stop="59598" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58631" g_stop="58308" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="536" r_length="319" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E559300" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59813" e_stop="59598"/>
          <exon e_start="58631" e_stop="58308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTT-CTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTG</genome_strand>
        <mrna_strand>AAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGTTGGTCGGCACACAGCTTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGG--TTGTCTCAAGAGGAGCTG-ACAAATGAAAATTCTATTG-TGCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAATTCATAAGCAGTTATTACTCCAAATAATGAACTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607688" ref_strand="+" ref_description="SGN-E607688 [23659]">
      <seq>ctttgagctgatatctccagttcctcttgaaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgggctgagggttctgaaaatgcaagatcagtttcaggtctggttgtctcaagaggagctgacaaatgaaaattctattgtgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaattgaatatattggagaaagtagtccactttgtagcatcttataattcataagcagttattactccaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="59932" stop="58015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59632" g_stop="59598" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58631" g_stop="58320" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="344" r_length="308" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="356"/>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E607688" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59632" e_stop="59598"/>
          <exon e_start="58631" e_stop="58320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGCTGATATCTCCAGTTCCTCTTG-AAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCA-GTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATA</genome_strand>
        <mrna_strand>CTTTGAGCTGATATCTCCAGTTCCTCTTGAAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGGGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGGTCTGG--TTGTCTCAAGAGGAGCTG-ACAAATGAAAATTCTATTG-TGCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGAATATATTGGAGAAAGTAGTCCACTTTGTAGCATCTTATAATTCATAAGCAGTTATTACTCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423677" ref_strand="-" ref_description="SGN-E423677 [STM-42-K20]">
      <seq>atgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagatcagtttcagtctggttttgtctcaagaggagctgacatatgaaaattctattgcgcttgcggaaatacaagacacgtgacgattgctaatttaatcatcatttgacatttttttctgttgcaatgccaagagatgtgtcgtcgtgaaaaagaatatattgaagaaagtagtccagtttgtagcatcttatagttcataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60015" stop="58038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59715" g_stop="59598" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58631" g_stop="58338" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="409" r_length="291" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E423677" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423677" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59715" e_stop="59598"/>
          <exon e_start="58631" e_stop="58338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAG</genome_strand>
        <mrna_strand>ATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTG-ACATATGAAAATTCTATTGC-GCTTGCGGAAATACAAGACACGTGACGATTGCTAATTTAATCATCATTTGACATTTTTTTCTGTTGCAATGCCAAGAGATGTGTCGTCGTGAAAAAGAATATATTGAAGAAAGTAGTCCAGTTTGTAGCATCTTATAGTTCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322993" ref_strand="+" ref_description="SGN-E322993 [cTOB-30-N9]">
      <seq>agaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaaatgaaaattctattgctgcttgcggaaatacaagacacgtgatgggtgctaatttaatcatcatttgacatttttttatattgcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61342" stop="58112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61042" g_stop="61012" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="94" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="157" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="398" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58631" g_stop="58412" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="618" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E322993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61042" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGC</genome_strand>
        <mrna_strand>AGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGGTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697609" ref_strand="+" ref_description="SGN-E697609 [FA03CC08]">
      <seq>ccgtttagattttagggctgatgcagggaaccttaaaatctaccgtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacacagatttgccctgagagagggtggcagaacggttggtgctggggttgtttctaaagtactgagctgagggttctgaaaatgcaagcttcagtttcagtctggttttgtctccagaggagctgaacaaatgaaaattctattgctgcttgcggaaataccagacacgtgatggttgctaatttaatcatcatttgacatttttttatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61335" stop="58119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61037" g_stop="61012" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="89" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="152" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="393" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58631" g_stop="58419" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="606" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E697609" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61037" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATT</genome_strand>
        <mrna_strand>CCGTTTAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACCGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCCAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACCAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451003" ref_strand="+" ref_description="SGN-E451003 [cSTS-11-K23]">
      <seq>gaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattctcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaagatgtggagattttagggctgatgcagggaactttaaaatctacagtgactggtgttgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttaaaacgagaagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagcttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggccgaacagttggtgctgggggttgtttctaaagtactgagctgagggttctgaaatgcaagatcagtttcagtctggttttgtctcaagaggagctgacatatgaaaattctattgcgcttgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61811" stop="58175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61511" g_stop="61392" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="204" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="267" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="330" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="571" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58631" g_stop="58475" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="725" r_length="154" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E451003" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61511" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCT-GGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGA</genome_strand>
        <mrna_strand>GAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTCTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAAGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTTTAAAATCTACAGTGACTGGTGTTGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTAAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTG-AAATGCAAG-ATCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTG-ACATATGAAAATTCTATTGC-GCTTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214243" ref_strand="+" ref_description="SGN-E214243 [cLEC-77-B13]">
      <seq>tgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagaaggtggcaaaacggttggtgctgggggttgttctaaagtactgagctgagggttctgaaatgcaagcttcagtttcagtctggttttgtctcaagaggagctgaacaatgaaaattctattgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61767" stop="58181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61467" g_stop="61392" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="160" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="223" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="286" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="527" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58631" g_stop="58481" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="676" r_length="149" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E214243" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61467" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCT</genome_strand>
        <mrna_strand>TGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAAGGTGGCAAAACGGTTGGTGCTGGGGGTTGTTCTAAAGTACTGAGCTGAGGGTTCTG-AAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAAC-AATGAAAATTCTATTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568544" ref_strand="+" ref_description="SGN-E568544 [12844]">
      <seq>gaaatgttcaagaaagatcttggataatggtcaagctggtgcataatgtcgggcggcgtctacgtggcttaaaacgagaagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatctgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagcttttttctcaaactataggcctcagttctacatgaggactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttggaaacaggacaaagatttgccctgagagagggtggcgaacagttggtgctggggttgttgctaaagtactgagctgagggttctgaaaatgcaagatcagtttcagtctggttgtgtctcaagaggagctgagatatgaaaaattctattgcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60670" stop="58202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60370" g_stop="60338" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="98" r_length="64" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="340" r_length="242" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58631" g_stop="58482" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="488" r_length="148" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E568544" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60370" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTTCAAG-AAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTG-ATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTT-GAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGC</genome_strand>
        <mrna_strand>GAAATGTTCAAGAAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGCATAATGTCGGGCGGCGTCTACGTGGCTTAAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATCTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGC-GAACAGTTGGTGCTGGGGTTGTTGCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAG-ATCAGTTTCAGTCTGGTTGTGTCTCAAGAGGAGCTGAGATATGAAAAATTCTATTGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701034" ref_strand="+" ref_description="SGN-E701034 [FA14DD09]">
      <seq>ggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattcttcttgcccgccaggtcggtgtgccctctcttgtctgctttttaacaaagttgatgctgttgacgatcctgagctgctggaacttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctncaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctggggttgtttctaaagtactgagctgagggttctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="62272" stop="58249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61972" g_stop="61894" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61806" g_stop="61716" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="169" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="375" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="459" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="522" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="585" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="826" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58631" g_stop="58549" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="909" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E701034" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61972" e_stop="61894"/>
          <exon e_start="61806" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAA</genome_strand>
        <mrna_strand>GGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTGCCCTCTCTTGTCTGCTTTTT-AACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTNCAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375717" ref_strand="+" ref_description="SGN-E375717 [TUS-35-G11]">
      <seq>ttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctctttgaacaggacaaagatttgccctgagagagggtggcagaacggttggtgctgggggtgtttcttaagtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="62036" stop="58267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61736" g_stop="61716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="227" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="374" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="437" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="678" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58631" g_stop="58567" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="743" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E375717" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61736" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTG</genome_strand>
        <mrna_strand>TTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTTGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGGTGTTTCTTAAGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561168" ref_strand="+" ref_description="SGN-E561168 [17118]">
      <seq>gtgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattctcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaagatgtggagattttagggctgatgcagggaactttaaaatctacagtgactggtgttgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttaaaacgagaagatattacacgaggaatggtgattgcgaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcgggacacagcttttttctcaaactatagggctcagttctacatgaggactgctgacattactggtaaagtggaattgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacttttgagctgatatctccagttcctcttgaaacaggacaaagatttggcctgagagagggtggccgaacagttggtgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61783" stop="58285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61484" g_stop="61392" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="177" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="240" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="303" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="544" r_length="241" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58631" g_stop="58585" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="591" r_length="47" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E561168" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61484" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGG</genome_strand>
        <mrna_strand>GTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTCTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAAGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTTTAAAATCTACAGTGACTGGTGTTGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTAAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCGAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGGACACAGCTTTTTTCTCAAACTATAGGGCTCAGTTCTACATGAGGACTGCTGACATTACTGGTAAAGTGGAATTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACTTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGGCCTGAGAGAGGGTGGCCGAACAGTTGGTGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375629" ref_strand="+" ref_description="SGN-E375629 [TUS-35-G5]">
      <seq>ttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttngcctgaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagagagggtggcagaacggttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="62036" stop="58288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61736" g_stop="61716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="227" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="374" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="437" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="678" r_length="241" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58631" g_stop="58588" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="722" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E375629" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61736" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTT-GCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCT</genome_strand>
        <mrna_strand>TTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTNGCCTG-AAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240166" ref_strand="+" ref_description="SGN-E240166 [cLED-25-G9]">
      <seq>ggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60700" stop="58310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="367" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58631" g_stop="58610" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="389" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E240166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAGAGA</genome_strand>
        <mrna_strand>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241150" ref_strand="+" ref_description="SGN-E241150 [cLED-26-N5]">
      <seq>ggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattaccggtaaagtggagttgcctgaaaatgtcaagatggttatgcccggtgataatgttacagctacctttgagctgatatctccagttcctcttgaaacaggacaaagatttgccctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="60700" stop="58313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="126" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59838" g_stop="59598" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="367" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59597" i_stop="58632" i_length="966">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58631" g_stop="58613" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="386" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E241150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59598"/>
          <exon e_start="58631" e_stop="58613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAGGTATTTGTATTTCATAAATCATTTTGTGATTTTTGCTTATCAGTAGAGTAAGGGTTCATCTGTGATTGTAGTTATTCTTGTTTTCTCCCCTTGAAGTTGCGTAGTGACAATATTTTTGAAATGGTCATTGTCAATTACAAGGTGATACTATCTTATTGAGATCTGGAGATTTTTTGGGGTGCATTACATTGACTTGTGCTTTGCCTGGTTATGTTTCTCCCTGATAAAGAAGAGCTCATCATCTTACTTGAGGGAACATTTACATTGCTTTCATTATTTTTCTTACTAATGTGATGATCAATCTCATTCTAAAACAACTGGATCATATGGATTAATGCCTTGTCCCGCTTCATCTGAAGTTCCGATCCTGTTAGCCTTGATGTCCAGTGAAACCCATTTGGTGTAAAGTTTTTGAAATTTGATTCTGGACATGTCAAACGTTTTTCACAACACTGAGAACTGAACCTACTGGACTGATTTATTGGTTCTTTCCCCATAAATACGGGTTTCAATAAAATATAAGTTGAACATTATAAAACAATAGTATTCTATGTAGCCAATGTGATTCCTAGTAACATTCATGTTTTTTGTGACTTCTTAAAATGAAGTAACAAAAATTAACTGAAATAGAAGAGAAACCAAGATGATAAGATTGGTTTGGGAAAATGTGTTATACACAGTAGATCCACTGAAAACAGTATAGTGTAAATATTGGAATAACTGGACAAGCCGAACCATTAACACCACTATTTGATTCTAACAAATGCAAGATTTTGGATTATGTTGCAACTTAGAATATTGATTCTTCTTTTCGCTTTGAATGCTGCCTCATAATTATGCATGTGTTGTATGTTTTTAAGGGGTTTTCTAAGAGATTTGATTGTTGTTCAACTTTGTTGAAGAAAAGTATTTCCTTGAATGGCACACATCTGATTGTTTATGTTCCATCTGCCCGTAACTTTTCAGGACAAAGATTTGCCCTGAG</genome_strand>
        <mrna_strand>GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGATTTGCCCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423676" ref_strand="+" ref_description="SGN-E423676 [STM-42-K20]">
      <seq>ttaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattctcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaagatgtggagattttagggctgatgcagggaactttaaaatctacagtgactggtgttgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttaaaacgagaagatattacacgaggaatggtgattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacacagcttttttctcaaactataagcctccgttctacatgaagactgctgacattactggtaaagtggagttgcctgaaaatgtcaagatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61810" stop="59358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61512" g_stop="61392" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="205" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="268" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="331" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59838" g_stop="59658" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="512" r_length="181" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E423676" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61512" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTA</genome_strand>
        <mrna_strand>TTAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTCTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAAGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTTTAAAATCTACAGTGACTGGTGTTGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTAAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTGATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACAGCTTTTTTCTCAAACTATAAGCCTCCGTTCTACATGAAGACTGCTGACATTACTGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201416" ref_strand="+" ref_description="SGN-E201416 [cLEC-4-H6]">
      <seq>ttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgtactaactaaggatgaaggtggtcggcacactgcttttttctcaaactataggcctcagttctacatgagaactgctgacattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="61891" stop="59395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61591" g_stop="61392" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="284" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="347" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="410" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59838" g_stop="59695" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="554" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E201416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61591" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACC</genome_strand>
        <mrna_strand>TTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255739" ref_strand="+" ref_description="SGN-E255739 [cLEG-36-B6]">
      <seq>ttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcatggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcagggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacgtggcttgaaacgagaagatattacacgaggaatggtaattgcaaagcctggtagtgtgaaaacgtccaagaaatttgaggcagaaatatacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="62036" stop="59479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61736" g_stop="61716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="227" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="374" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60247" g_stop="60185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="437" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60184" i_stop="59839" i_length="346">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59838" g_stop="59779" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="497" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E255739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61736" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60185"/>
          <exon e_start="59838" e_stop="59779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATGGTAAGTCCAAATTTCACTGTGTTACTCATAAAGTGACTTGGCATTTGTGCCACCTTATCTACAGAGTTGTTTATCTGTGAGATGTTGTAAAAGTTCCTTCTGCTTTCGTTTTTTTTCTACATTTTACATTGGTTGCTTGTTTGTCCCCTAGAATTTTATTAGAAGTAGCTTGGTATCAGGGTAGAATCACAGAGTTTTGTGGTGCGTTGTGCTATTTCCCTTGTCATGCTTGTTCAAGTCTGATAATGAGATGTTTCATGAAGTCAAAATCCAATAATCATTACCCAGATAATGTAACTATGTACATGTGTATCTTCCAGCATCTTATATAGTATTTTGTCTATAGGTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTA</genome_strand>
        <mrna_strand>TTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAT........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG..........................................................................................................................................................................................................................................................................................................................................................GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251578" ref_strand="+" ref_description="SGN-E251578 [cLEG-9-J11]">
      <seq>ttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccagatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttatggctgatgcatggaaccttaaaatctacagtgactggtgtcgaaatgttcaagaagatcttggataatggtcaagctggtgataatgtcgggcttcttctacctggcttgaaacgagaagatattacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="62036" stop="59893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61736" g_stop="61716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="227" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60400" g_stop="60338" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="374" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60337" i_stop="60248" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60247" g_stop="60193" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="429" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E251578" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61736" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60338"/>
          <exon e_start="60247" e_stop="60193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAAGTAAGGATTTGAGTCAATCCATGCATCTTTCTAATAGTTTTCATTTATCACCTATTGTGCGTCCCTGTTTTGATTTATTTTCTTAATTAGGCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACAC</genome_strand>
        <mrna_strand>TTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTATGGCTGATGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA..........................................................................................GCTGGTGATAATGTCGGGCTTCTTCTACCTGGCTTGAAACGAGAAGATATTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376376" ref_strand="+" ref_description="SGN-E376376 [TUS-48-G6]">
      <seq>ttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggatgctgtagatgaatacattccatatccagtgcgtcagcttgataaaccattcttaatgccagtagaagatgtattttcaattcagggacgtggaactgttgctactggccgtattgaacagggaacaataaaagttggagaggatgtggagattttagggctgatgcaaggaaccttaaaatctacagtgactggtgttgaaatgttctagacgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="62036" stop="60051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61736" g_stop="61716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61597" g_stop="61392" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="227" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61391" i_stop="61096" i_length="296">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61095" g_stop="61012" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61011" i_stop="60401" i_length="611">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60400" g_stop="60351" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="361" r_length="50" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E376376" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61736" e_stop="61716"/>
          <exon e_start="61597" e_stop="61392"/>
          <exon e_start="61095" e_stop="61012"/>
          <exon e_start="60400" e_stop="60351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAGGTAATCTGATATCCTAGTAGCTCATGTTTAACCACAGATCAGTTAAACTACCTTTTTCAGTTTCTTTCTGGTCCCTTGAATTGTACTTCATTTTTGAGGTTTATCTCTAACTTCCATATGTTCATAGCCTTTGTGCTATGATGCTATAACTCTTTATGCTTATTTAAGTACAATCCTTTTGCTCCGAGAGTTTTTTTTTTCAGCTGTCCATCTTTCATTTCCAAAAAGAGGAAAAATAATAATGCTAGGACCTTGTTTTTAATGTGATACTGATCTTTTACCGCTAATGTTTGAAGGGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAGGTTAGTTGTTAGCGTATTCACTTGTTCAATTACCTACTTTCTTTAGGGGGAGAATATATTGGTTCATTACATGTCCAGATTTTCTGTGATATCTAGACTTCGATATGCCTTTCCTATTTGTCTGTGTTGAAACCTGAGGATGAACGATGCCATGCTTTTATGTAACTTATTGATATGGGTTATTATGTGTAGTATTTCACAATCTTACAAGTTAAGAGTAAATTTGTTACAAGGTATAGAAAAATCTCTTGTAAACAAGCAAACTAGTACACCCACTGTAACGTCATGAATGCACCAAAAAGAAACTAGGAATGAGAGGCTATTTCTCAAGTAGACATTATATTTTTCTGTCCCTTCAAAACTCTTCTATTTCTCCTCTTCCCTAAGACGTACGTGAATTCTAATGGCACAATGACACTTGTAATAACAAGTCTAGGTTGTAGTTAACTATTATTGTAATGATGAGGATGCTTAATTTAATCGTAGCTGGATGTGTAGTTTTCAGAAATTGTGTTTCCTTATTTGTATGTTAAATGACATTATGGGCTTTCATAGAAGAACTATGATTGTGCTTTTCTTAGCATTTGTTCATGTAATCTTTCTTTTTATAGGGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTT</genome_strand>
        <mrna_strand>TTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCATATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG........................................................................................................................................................................................................................................................................................................GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCTTAAAATCTACAGTGACTGGTGTTGAAATGTTCTAGACGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604642" ref_strand="+" ref_description="SGN-E604642 [74779]">
      <seq>ctcatcttctccaatggcgtccgtcgctttcaggaatcccaattcgaaacgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctccgagacgcaaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaatgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaagaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaacagacattatgctcatgttgactgcccaggacacgcagattacgttaaaaatatgattactggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccacaaacaaaggagcatattcttcttgcccgccaggtcggtgtaccctctcttgtctgctttttaaacaaagttgatgctgttgatgatcttgagctgctggaacttgttgaaaatggagcttcgggaactgcttagtttttacaagttccctgggggatgaaattcctatcatccgtggttcagctctttctgcttttacaggggaactaatgaagaaatggaaagaaagtattttaagttgatggatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64760" stop="61171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64463" g_stop="64266" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="274" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="367" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="443" r_length="76" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="548" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61716" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="640" r_length="92" r_score="0.934"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.90"/>
            <acceptor a_prob="0.900" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61597" g_stop="61475" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="763" r_length="123" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E604642" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64463" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61716"/>
          <exon e_start="61597" e_stop="61475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAA-AGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTG-AAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCT-GGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGC-TTTACA-GGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATG</genome_strand>
        <mrna_strand>CTCATCTTCTCCAATGGCGTCCGTCGCTTTCAGGAATCCCAATTCGAAACGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCGAGACGCAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAAGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAACAGACATTATGCTCATGTTGACTGCCCAGGACACGCAGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACTGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCACAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTACCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGATGATCTTGAGCTGCTGGAACTTGTTGAAAATGGAGCTTCGGG......................................................................................................................AACTGCTTAGTTTTTACAAGTTCCCTGGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTTACAGGGGAACTAATGAAGAAA-TGGAAAGAAAG-TATTTT-AAGTTGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689454" ref_strand="+" ref_description="SGN-E689454 [t3_tus_84_N23]">
      <seq>cattatcgttttcagaaatcccaattcgaagcgcgtgttgtctctctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattcttcttgcccgccaggtcggtgtgccctctcttgtctgctttttaaacaaagttgatgctgttgacgatcctgagctgctggaacttgttgaaatggagcttcgagaacttcttagtttctacaagtttcctggggatgaaattcctatcatccgtggttcagctctttctgctttacagggaactaatgaagaaattggaaagaaagctattttaaagttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64740" stop="61176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64446" g_stop="64266" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="256" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="349" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="529" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61716" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="620" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61597" g_stop="61476" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="742" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E689454" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64446" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61716"/>
          <exon e_start="61597" e_stop="61476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGAT</genome_strand>
        <mrna_strand>CAT-TATCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCTCTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAG......................................................................................................................AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419606" ref_strand="+" ref_description="SGN-E419606 [STM-29-L18]">
      <seq>gttttcaagaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctcccagacgcaaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaatgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaagaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattactggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccacaaacaaaggagcatattcttcttgcccgccaggtcggtgtaccctctcttgtctgctttttaaacaaagttgatgctgttgatgatcttgagctgctggaacttgttgaaatggagcttcgggaactgcttagtttttacaagttccctggggatgaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64738" stop="61258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64438" g_stop="64266" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="249" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="342" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="417" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="522" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61716" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="613" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.94"/>
            <acceptor a_prob="0.900" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61597" g_stop="61558" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="653" r_length="40" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E419606" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64438" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61716"/>
          <exon e_start="61597" e_stop="61558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCC</genome_strand>
        <mrna_strand>GTTTTCAAGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCCAGACGCAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAAGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACTGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCACAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTACCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGATGATCTTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGGG......................................................................................................................AACTGCTTAGTTTTTACAAGTTCCCTGGGGATGAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454298" ref_strand="+" ref_description="SGN-E454298 [cSTS-22-F22]">
      <seq>acccttcaaaaccccttaaagccatttccagcttctcatcttctccaatggcgtccgtcgttttcaagaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctcccagacgcaaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaatgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaagaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattactggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccacaaacaaaggagcatattcttcttgcccgccaggtcggtgtaccctctcttgtctgctttttaaacaaagttgatgctgttgatgatcttgagctgctggaacttgttgaaatggagcttcgggaactgcttagttttttacagttccctggggatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64798" stop="61410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64498" g_stop="64266" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="308" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="401" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="476" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="581" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61716" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="672" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61715" i_stop="61598" i_length="118">
            <donor d_prob="0.177" d_score="0.94"/>
            <acceptor a_prob="0.900" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61597" g_stop="61561" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="709" r_length="37" r_score="0.838"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E454298" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64498" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61716"/>
          <exon e_start="61597" e_stop="61561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAGGTGCGCCAGCTTTTAATTGTACTATTACTTATGCAGAACCTGAAGTCCTGGTAACTTGCTTGCAGCTGTCATGACTTTGTTTTATTCATTTCCTTACGTGAGATTTCTTTTCTTGCAGAACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAAT</genome_strand>
        <mrna_strand>ACCCTTCAAA-ACCCCTTAAAGCCATTTCCAGCTTCTCATCTTCTCCAATGGCGTCCGTCGTTTTCAAGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCCAGACGCAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAAGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACTGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCACAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTACCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGATGATCTTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGGG......................................................................................................................AACTGCTTAGTTTTTTACAGTTCCCTGGGGATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268158" ref_strand="+" ref_description="SGN-E268158 [cLEI-15-O22]">
      <seq>ccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattcttcttgcccgccaggtcggtgtgccctctcttgtctgctttttaaacaaagttgatgctgttgacgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64725" stop="61450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64425" g_stop="64266" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="236" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="329" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="404" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="509" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61750" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="566" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E268158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64425" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCT</genome_strand>
        <mrna_strand>CCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446644" ref_strand="+" ref_description="SGN-E446644 [cSTA-22-M2]">
      <seq>ctaaacccttcataaccccttaacgccatttccagcttctcatcttctccaatggcgtccgtcgttttcaggaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctcccagacgcgaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaacgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaggaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgattgcccaggacacgcggattacgttaaaaatatgattactggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgcctcaaacaaaggagcatattcttcttgcccgccaggtcggtgtaccctctcttgtctgctttttaaacaaagttgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64802" stop="61461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64502" g_stop="64266" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="312" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61894" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="585" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61893" i_stop="61807" i_length="87">
            <donor d_prob="0.339" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61806" g_stop="61761" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="631" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E446644" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64502" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61894"/>
          <exon e_start="61806" e_stop="61761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAGGTGGATACTCGTGGATAGACCAGAAAAATAACTGAAATAGACTTTTTTTTGGTGATTCTAATTGTTTCTTTTTCTTATGCTTTGCAGGTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTG</genome_strand>
        <mrna_strand>CTAAACCCTTCATA-ACCCCTTAACGCCATTTCCAGCTTCTCATCTTCTCCAATGGCGTCCGTCGTTTTCAGGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCCAGACGCGAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAACGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAGGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGATTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACTGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCTCAAACAAAGGAGCATATTCTTCTTGCCCGCCAG.......................................................................................GTCGGTGTACCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239610" ref_strand="+" ref_description="SGN-E239610 [cLED-23-P1]">
      <seq>ggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64593" stop="61605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64293" g_stop="64266" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="104" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="197" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="272" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61905" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="366" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E239610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64293" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTC</genome_strand>
        <mrna_strand>GGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282197" ref_strand="+" ref_description="SGN-E282197 [cLES-4-P22]">
      <seq>tgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatgggggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64681" stop="61606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64381" g_stop="64266" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="192" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="285" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="360" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61906" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="453" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E282197" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64381" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTT</genome_strand>
        <mrna_strand>TGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGGGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268803" ref_strand="+" ref_description="SGN-E268803 [cLEM-4-H15]">
      <seq>tcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaaggagcatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64740" stop="61608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64440" g_stop="64266" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="251" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="344" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="419" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61908" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="510" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E268803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64440" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTC</genome_strand>
        <mrna_strand>TCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230994" ref_strand="+" ref_description="SGN-E230994 [cLED-5-A18]">
      <seq>ggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaacaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64593" stop="61617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64293" g_stop="64266" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="104" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="197" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="272" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61917" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="354" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E230994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64293" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGG</genome_strand>
        <mrna_strand>GGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287836" ref_strand="+" ref_description="SGN-E287836 [cLES-19-P17]">
      <seq>tcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64793" stop="61622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64493" g_stop="64266" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="304" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="397" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="472" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61922" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="549" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E287836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64493" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAAC</genome_strand>
        <mrna_strand>TCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482949" ref_strand="+" ref_description="SGN-E482949 [cSTE-6-K17]">
      <seq>tcaaaaccccttaacgccatttccagcttctcatcttctccaatggcgtccgtcgttttcaggaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctcccagacgcgaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaacgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaggaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgattgcccaggacacgcggattacgttaaaaatatgattactggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgcctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64793" stop="61624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64493" g_stop="64266" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="303" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="396" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="471" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61924" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="546" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E482949" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64493" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAA</genome_strand>
        <mrna_strand>TCAAA-ACCCCTTAACGCCATTTCCAGCTTCTCATCTTCTCCAATGGCGTCCGTCGTTTTCAGGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCCAGACGCGAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAACGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAGGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGATTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACTGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331475" ref_strand="+" ref_description="SGN-E331475 [cTOD-9-G11]">
      <seq>taaacccttcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagctgcccaaatggatggtggtattctagttgtatctgctccagatggacctatgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64801" stop="61626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64501" g_stop="64266" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="312" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61926" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="553" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E331475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64501" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGC</genome_strand>
        <mrna_strand>TAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329837" ref_strand="+" ref_description="SGN-E329837 [cTOD-3-J9]">
      <seq>aaacctaaacccttcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattaccggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64806" stop="61681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64506" g_stop="64266" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="317" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="410" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="485" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63504" i_stop="61999" i_length="1506">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61998" g_stop="61981" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="503" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E329837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64506" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
          <exon e_start="61998" e_stop="61981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAAGTGAGATGCAAAACATACCTATATTTACTGCAGTATGCTCGTTCACCATGTTTTATGTATTGCCACTGCTGTAGGAGTGATTAATTATGTCTTTCCTGAATTGTGAATAGTGCTAAGTTAGATGTTTATCATTTGAGAGTTTATTTCACTCACCATGACGCTAGTAATTAAGAATTTACCTAGTTCCCTTAAGATCAAAAGTTTGTGTGAATGAAGACTGAAACTACTTAAAAACTATAAGCTCCATTCTTTTATGATATCGACTGTTGAATGTGTACATTTGCTTTATTCCTGGTTAAAACCATTAAAGTAGGAAGTTCATGATATTAGACCATCTACCGCATTACCTTAAATATTGGCCCATTTTATTTGATAGTAGTGATAAATGTCGAAGTTTGAGCAATTAATTCTGACTTGTTTATTATATTTGTAGTAATTGAAAAATAACCGAAATGTGGATTTATTGAAATTTGTATGGAAGTATACAATAAATAAGATGGTATAATAATCAATACATTTTGGGATGTTGCAAAGTAGAGTGTTGTCAATTCAAATTAAATGGCAGGAGTTGTCTTTTAGAGGCTAAAATATTGTGGCACAATATAGGTCCCCAAGTGGTAGACATCATCCAACTTTTCTTACACCTCATTGTGCTTCACTTTCTCTGATTGAAAAAGTATGGTTTGGTGTGGTAAATTTTGGCCTATGCAGGAGTACCTAGTGTAAAAAGCACTACTACAGTACTACTTTCTTGTGGTTTGTGAGTATCAAATTCTTTCAACCCTTTCTTGGTGGAATCTTTTCTCATTGTTTCATTGTTTAATGATTCTTCAAGCTTTTTGCTCTTTGAACAAGAAACATAGTGTTAGTTGGGGGCAGCAGTGACAATTTATTATTTGGGAGCAACTTGTGGGATTACGTAAAATCTTTCTCTGAAGTGAGAGATAATTTAACTTGTTCTCCTTTGTAATCTCTTCATACTTGCTTGGTCAAACCATATGTTGTTACTTGTGGTGATCGATTCTTCTTTTGAAGATAAAACTTATGGAGACTTAGTCAAGTTGCAAATTCTGCATTGAGACATAATGGTAACTTGACAATCCCTACCTAAAGATGAATCTGTTTAGCTCTTTGAGCAAAAATTGACATATGACCCATCCCGGTTTCGGGTTATTTTTGCTGCTTGATGTTGGAAACTAATTTCAAGTATAAATGTAACTCTGTTTTTTCCTCTATTTCCTTTTTAATTGTTAAAAGTATTTTAGTTATTAAAGCAACAAGTGCTGTAAATATTTACAATATGGGCTAAATTACTGATTATTAAATAAGCTTAAGAAGTCAACCTTGGTGTCTAAAATATTTGCAATAGCCATGTTCCACCAAAAAAATAGTGAAGATATACATCTGGTATTAATGCTAATAACAGACTCCAAGTTGCTCTGAAAAATTCTAATAATTGTTAACTTCTTGTTTATTCAATTTCTAATCACTTGCTTTAAACTATAGAATATGATTACCGGAGCT</genome_strand>
        <mrna_strand>AAACCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGATTACCGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476565" ref_strand="+" ref_description="SGN-E476565 [cSTB-45-E12]">
      <seq>aggaaacccttcaaaaccccttaaagccatttccagcttctcatcttctccaatggcgtccgtcgttttcaagaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctcccagacgcaaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaatgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagatgaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgactgcccaggacacgcggattacgttaaaaatatgattactggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64800" stop="63205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64503" g_stop="64266" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="313" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="406" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="481" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E476565" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64503" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA</genome_strand>
        <mrna_strand>AGGAAACCCTTCAAA-ACCCCTTAAAGCCATTTCCAGCTTCTCATCTTCTCCAATGGCGTCCGTCGTTTTCAAGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCCAGACGCAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGATGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436979" ref_strand="+" ref_description="SGN-E436979 [cSTA-2-E5]">
      <seq>ctgaacccttcaaaaccccgtaacgccatttccagcttctcatcttctccaatggcgtccgtcgttttcaggaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactcttccagacgcgaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaacgtgggaactataagccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaggaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctgaagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgattgcccaggacacgcggattacgttaaaaatatgattactggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64802" stop="63205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64502" g_stop="64266" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="312" r_length="76" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E436979" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64502" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA</genome_strand>
        <mrna_strand>CTGAACCCTTCAAA-ACCCCGTAACGCCATTTCCAGCTTCTCATCTTCTCCAATGGCGTCCGTCGTTTTCAGGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTTCCAGACGCGAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAACGTGGGAACTATAAGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAGGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGATTGCCCAGGACACGCGGATTACGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417692" ref_strand="+" ref_description="SGN-E417692 [STM-25-N2]">
      <seq>ctaaacccttcaaaaccccttaacgccatttccagcttctcatcttctccaatggcgtccgtcgttttcaggaatcccaattcgaagcgcgtattgtcactctctcctcaaatctactcatgttgtagaggaggatcagtttcctctcagttttcactctcccagacgcgaaatggaaatgatacttccagtctttctaatccatggtggagatccatggccaccttcaatcgaacaaaacctcatgtaaacgtgggaactataggccatgttgatcacgggaagactactcttactgctgcaattacaaaggtcctagcagaggaaggaaaggccaaggcggttgcatttgatgaaattgacaaagcccctngagagaaaaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgattgcccaggacacgcggattacgttaaaaatatgattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64802" stop="63205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64502" g_stop="64266" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="312" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63505" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E417692" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64502" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA</genome_strand>
        <mrna_strand>CTAAACCCTTCAAA-ACCCCTTAACGCCATTTCCAGCTTCTCATCTTCTCCAATGGCGTCCGTCGTTTTCAGGAATCCCAATTCGAAGCGCGTATTGTCACTCTCTCCTCAAATCTACTCATGTTGTAGAGGAGGATCAGTTTCCTCTCAGTTTTCACTCTCCCAGACGCGAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCCATGGCCACCTTCAATCGAAC.....................................................................................................................................................AAAACCTCATGTAAACGTGGGAACTATAGGCCATGTTGATCACGGGAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTCCTAGCAGAGGAAGGAAAGGCCAAGGCGGTTGCATTTGATGAAATTGACAAAGCCCCTNGAGAGAAAAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGATTGCCCAGGACACGCGGATTACGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203685" ref_strand="+" ref_description="SGN-E203685 [cLEC-15-J21]">
      <seq>ctaaacccttcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataagacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaagagaagaagagaggaattactattgctacagcccacgtggagtatgagacagctaaaagacattatgctcatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64802" stop="63232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64502" g_stop="64266" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="313" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="406" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63661" i_stop="63580" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63579" g_stop="63532" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="454" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E203685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64502" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63662"/>
          <exon e_start="63579" e_stop="63532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACAGTATGGGATTTTCTCCTCCCTTGTGGTGTAATATTTTTTGAATTTTAATTTGTATTTAATGCTTTAGCTGTTGTTTCTGTAGGCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGAC</genome_strand>
        <mrna_strand>CTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAAGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA..................................................................................GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338213" ref_strand="+" ref_description="SGN-E338213 [cTOE-13-N22]">
      <seq>ttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagcttccactcaatttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatacatggtggagatctatggccaccttcactcgaacaaaacctcatgtgaatgtgggaactataggacacgtttatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagcccctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64737" stop="63391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64266" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="248" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63691" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="312" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E338213" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAG</genome_strand>
        <mrna_strand>TTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGCTTCCACTCAATTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATACATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTGAATGTGGGAACTATAGGACACGTTTATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270597" ref_strand="+" ref_description="SGN-E270597 [cLEN-1-M11]">
      <seq>aaaaaacctaaactcttcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttactgctgcaattacaaaggttctagcagaagaaggaaaggccaaggcaattgcatttgatgaaattgacaaagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64809" stop="63397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64509" g_stop="64266" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64041" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="320" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64040" i_stop="63755" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63754" g_stop="63697" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="378" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E270597" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64509" e_stop="64266"/>
          <exon e_start="64116" e_stop="64041"/>
          <exon e_start="63754" e_stop="63697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAGGTTAGTGTGGTTGGACATTATGTATTGCTACTTGCATTCCATTTTGTATGACAAATCATTTGACAGGGAACTGGAGATTTAATGTAGAATTGATTAGTGTATTATACTTGTGGCAGTGGATTAAAAGGTCGTATAGAAAATGTTATATTAAAGTTTGAAGTAGAGGAAAATGGATTTTGAAGTAGTGTATTATTTATGGAATGATATTTAACATTTTTAGTTCCCTTTTCTTTGCCACTCATTATGTAACTACCAATTGTTTGATAAGCACCTTTGCGTTGTCCAGGTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCC</genome_strand>
        <mrna_strand>AAAAAACCTAAACTCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG..............................................................................................................................................................................................................................................................................................GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268210" ref_strand="+" ref_description="SGN-E268210 [cLEI-15-J18]">
      <seq>tcaaatacccctcaacgccatttccagcttcgtagcttcttcaatggcgtccgtcgttttcagaaatcccaattcgaagcgcgtgttgtcactctctcctcaaatctactcgtgttgtagaggaggatcagtttccactcagtttttgctctccgaaacgaaaaatggaaatgatacttccagtctttctaatccatggtggagatctatggccaccttcactcgaacaaaacctcatgtaaatgtgggaactataggacacgttgatcatggaaagactactcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="64793" stop="63756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64493" g_stop="64266" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64265" i_stop="64117" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64116" g_stop="64056" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="289" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E268210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64493" e_stop="64266"/>
          <exon e_start="64116" e_stop="64056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAACGTAAGCTTATGAAAAACTTCAACTACTGTAGCTCAACATAGTAAATTTACTTGTAGTATGTTTTGGTAAATCACTTGATCTAATACTATTTTAATTCTGATAAGCTGAATTTGTTAATAATATCTAATTTATTTTCTGTTTTCCTGCAGAAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACT</genome_strand>
        <mrna_strand>TCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC.....................................................................................................................................................AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233843" ref_strand="+" ref_description="SGN-E233843 [cLEL-8-E17](-)">
      <seq>ggctactagctattgcagcagaaaaaggttggagagtttaacaacttgatgttaagtcggcctttatcaatggtcttctccaagaggagatttatgttgagcaaccaggtggctttgttgccaaggggcaagaaaataacaagattgacaatcatttgctcagtttaggtttcaagaagagcctatctgagtctacactttatattaagtgttcaggtgcagagatacttattatttctttgtattttaacgatctgtttggcacaggaagtaaggtttgcctaattgaagacttcaagttggaaacgaggaaggtctttgaaataacaaacattggactaccggcgcactttcttggagtggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="83510" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83211" g_stop="82831" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E233843" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83211" e_stop="82831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTAGCTATTGCAGCAGAAAAAGGTTGGAGAGTTTAACAACTTGATGTTAAGTCGGCCTTTATCAATGGTCTTCTCCAAGAGGAGATTTATGTTGAGCAACCAGATGGCTTTGTTGCCAAGGGGCAAGAAAATAACAAGATTGACAATCATTTGCTCAGTTTAGGTTTCAAGAAGAGCCTATCTGAGTCTACACTTTATATTAAGTGTTCAGGTGCAGAGATACTTATTATTTCTTTGTATTTTAACGATCTGTTTGGCACAGGAAGTAAGGTTTGCCTAATTGAAGACTTCAAGTTGGAAACGAGGAAGGTCTTTGAAATAACAAACATTGGACTAACGGCGCACTTTCTTGGAGTGGAAATAAAAAAAAATGAAG</genome_strand>
        <mrna_strand>GGCTACTAGCTATTGCAGCAGAAAAAGGTTGGAGAGTTTAACAACTTGATGTTAAGTCGGCCTTTATCAATGGTCTTCTCCAAGAGGAGATTTATGTTGAGCAACCAGGTGGCTTTGTTGCCAAGGGGCAAGAAAATAACAAGATTGACAATCATTTGCTCAGTTTAGGTTTCAAGAAGAGCCTATCTGAGTCTACACTTTATATTAAGTGTTCAGGTGCAGAGATACTTATTATTTCTTTGTATTTTAACGATCTGTTTGGCACAGGAAGTAAGGTTTGCCTAATTGAAGACTTCAAGTTGGAAACGAGGAAGGTCTTTGAAATAACAAACATTGGACTACCGGCGCACTTTCTTGGAGTGGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234442" ref_strand="+" ref_description="SGN-E234442 [cLEL-8-E17](-)">
      <seq>tagctattgcagcaaaaaaaggttggagagtttaacaacttgatgttaagtcggcctttatcaatggtcttctccaagaggagatttatgttgagcaaccaggtggctttgttgccaaggggcaagaaaataacaagattgacaatcatttgctcagtttaggtttcaagaagagcctatctgagtctacactttatattaagtgttcaggtgcagagatacttattatttctttgtattttaacgatctgtttggcacaggaagtaaggtttgcctaattgaagacttcaagttggaaacgaggaaggtctttgaaataacaaacattggactaacggcgcactttcttggagtggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="83505" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83205" g_stop="82831" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E234442" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83205" e_stop="82831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTATTGCAGCAGAAAAAGGTTGGAGAGTTTAACAACTTGATGTTAAGTCGGCCTTTATCAATGGTCTTCTCCAAGAGGAGATTTATGTTGAGCAACCAGATGGCTTTGTTGCCAAGGGGCAAGAAAATAACAAGATTGACAATCATTTGCTCAGTTTAGGTTTCAAGAAGAGCCTATCTGAGTCTACACTTTATATTAAGTGTTCAGGTGCAGAGATACTTATTATTTCTTTGTATTTTAACGATCTGTTTGGCACAGGAAGTAAGGTTTGCCTAATTGAAGACTTCAAGTTGGAAACGAGGAAGGTCTTTGAAATAACAAACATTGGACTAACGGCGCACTTTCTTGGAGTGGAAATAAAAAAAAATGAAG</genome_strand>
        <mrna_strand>TAGCTATTGCAGCAAAAAAAGGTTGGAGAGTTTAACAACTTGATGTTAAGTCGGCCTTTATCAATGGTCTTCTCCAAGAGGAGATTTATGTTGAGCAACCAGGTGGCTTTGTTGCCAAGGGGCAAGAAAATAACAAGATTGACAATCATTTGCTCAGTTTAGGTTTCAAGAAGAGCCTATCTGAGTCTACACTTTATATTAAGTGTTCAGGTGCAGAGATACTTATTATTTCTTTGTATTTTAACGATCTGTTTGGCACAGGAAGTAAGGTTTGCCTAATTGAAGACTTCAAGTTGGAAACGAGGAAGGTCTTTGAAATAACAAACATTGGACTAACGGCGCACTTTCTTGGAGTGGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="105246" stop="104262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104946" g_stop="104563" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104946" e_stop="104563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATAACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGAGGATTAAATTTCTGAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAATTTT</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="105192" stop="104266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104891" g_stop="104564" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104891" e_stop="104564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGAGGATTAAATTTCTGAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAATTT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="105255" stop="104429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104956" g_stop="104729" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104956" e_stop="104729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATAACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577986" ref_strand="+" ref_description="SGN-E577986 [LE08CD09]">
      <seq>taccaccccaaccgaacctccacaactacaacctacataaacatcagcacaacctaacaactcacagtttacatagaacgtaactctacaaaaacatttagacaaattacatatcctccacaacaacactttaacaaattacatatcctcaacatcaacacttaaacaaattagatatcctcaatagcaacacttccaaaaatttacatatcctcaataacacacttcaacaaatcacatatcctcaacaacaacacttcaacaaattatatatcctcaataacaagctcagtattcaacaatcacaagttccgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="+" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="112877" stop="113821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113177" g_stop="113521" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="+" ref_id="SGN-E577986" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.082" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113177" e_stop="113521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCACCCCTAACCGAACCTCCACAACTCCAACCTGCATAAACATCAGCCCAACCTAACAGCTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATACTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTAACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATTACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</genome_strand>
        <mrna_strand>TACCACCCC-AACCGAACCTCCACAACTACAACCTACATAAACATCAGCACAACCTAACAACTCACAGTTTACATAGAACGTAACTCTACAAAAACATTTAGACAAAT--T--------ACA--T-A------------TCCTCCACAACAACACTTTAACAAATTACATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATCACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539191" ref_strand="+" ref_description="SGN-E539191 [TUS-58-N4]">
      <seq>cttgtggtatatgtttgggagtaacgggattggtgatggattgacttgtccacattgattaatttaatgatgaaaaaaaaaggataaaaaaaaaggcaatgtgattaaatatttaagtgtgatgtgttcagaaagggatgaaggattgttgaatcattgttgatgtgatttcatgtttgtgtggttttgaattgtgcaatgttatgaaaatggtcatctcctcattatttgtgtgaacttgccatctgcattattatgaggcattggttgtgacaagtgttatgtgcattgagaaagaatgagtacttaagaggatgtacaatttcgagggacgtatcgcgcgccgcgatggatactatatttcgagggacgtatcgcatgccgcgatggatactatattttgagggacgtatcgcgcgccgcgatggttactattatcgagggtcgtgtcgtgcgccgcgacagatgcatggacagatatgtcccccatggttcccagactgagagacagcgggtgtgtatcactaggtcagacatgcatcattatacttgacaatgcattacacatacttatcattggtgaacttgatattgtgttttgctgatcttgtgattgaatttctgcgaaatttgtgattgatgaatactgagcttgttattgaggatatataatttgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0004H04-y4IX7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0004H04.1" temp_strand="-" temp_description="C09SLm0004H04.1  AC234221.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0004H04 upload_account_name:spain (1 - 129938)">
        <position start="114447" stop="113160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114147" g_stop="113460" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0004H04.1" gen_strand="-" ref_id="SGN-E539191" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0004H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114147" e_stop="113460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGATATATGTTTGGGAGTAACGGGATTGGTGATGGGTTGATTTGTCCACATTGATTAATTCTAATGATGAAATAAAAGGGATAACTA-AA-GGCGATGTGATTAATTATTTATGTGTGATGTGTTGAGAAAAGTTTGATGGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATGGTCATCTTCTCATTATTTGTGTGAACATGTCAT-TGCATTATTCTGAGATA-TGATTGTG-GAAGTGTTATGTGCATTGAGAAAGAATGATAACTTAAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTATATTTCGAGGGACGTATCGCGCGCCGTGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGTTATTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACATTGCATTCCATTACATTGCACATACTTATCATTAGTGAACTTGATATTGTGTTTTGCTGATCTAGTGATTGACTTTTTGCGGAACTTGTGATTGTTGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</genome_strand>
        <mrna_strand>CTTGTGGTATATGTTTGGGAGTAACGGGATTGGTGATGGATTGACTTGTCCACATTGATTAATT-TAATGATGAAAAAAAAAGGATAAAAAAAAAGGCAATGTGATTAAATATTTAAGTGTGATGTGTTCAGAAAGGGATGAAGGATTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTTTGAATTGTGCAATGTTATGAAAATGGTCATCTCCTCATTATTTGTGTGAACTTGCCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTT-AAGAGGATGTACAATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGCATGCCGCGATGGATACTATATTTTGAGGGACGTATCGCGCGCCGCGATGGTTACTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGTTCCCAGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACA----A-TGCATT--A---CACATACTTATCATTGGTGAACTTGATATTGTGTTTTGCTGATCTTGTGATTGAATTTCTGCGAAATTTGTGATTGATGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>123</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8978" PGL_stop="8480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8978" e_stop="8480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="8978" e_stop="8480" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8978" stop="8480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGATTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACTAATTTCTGGTGATTTTTCATCTTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAACCTTCCTCAAATTCAAAACGCAAATGTAAAATATTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</gDNA_template>
            <first_frame> L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  I  V  F  L  I  Q  N  *  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  L  K  K  M  L  F  V  F  F  N  F  R  Y  D  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  F  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  R  C  *  N  E  G  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  T  F  L  K  F  K  T  Q  M  *  N  I  C  L  L  V  R  I  L  K  K  T  A  K  I  A  N  N  F  L  L  V  C  F  V  F  </first_frame>
            <second_frame>  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  *  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  C  C  L  Y  F  S  I  S  V  M  I  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  L  I  S  G  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  S  A  A  K  M  R  E  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  P  S  S  N  S  K  R  K  C  K  I  F  V  Y  S  *  G  S  *  K  R  R  R  R  S  R  T  I  F  Y  *  F  V  L  Y  L </second_frame>
            <third_frame>   F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  A  I  Y  F  D  C  F  F  N  P  K  L  N  Q  Q  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  N  V  V  C  I  F  Q  F  P  L  *  F  T  L  Q  W  L  N  P  R  G  L  L  E  V  F  I  L  I  N  *  F  L  V  I  F  H  L  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  P  L  L  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  N  L  P  Q  I  Q  N  A  N  V  K  Y  L  S  T  R  E  D  L  E  K  D  G  E  D  R  E  Q  F  S  I  S  L  F  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12101" PGL_stop="12922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12101" e_stop="12922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12101" e_stop="12922" e_length="822"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12101" stop="12867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12247" stop="12922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12552" stop="12905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTTTGATCCAATGCATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATTATAGGTTGGATATATGCCACAACTCGCCTCTATGGAAGGTTTGAGAAAAAATGAT</gDNA_template>
            <first_frame> D  K  T  I  D  S  S  S  I  S  P  K  G  *  D  I  N  *  S  F  D  T  P  *  L  G  S  S  S  I  E  L  W  R  N  T  P  Y  M  G  K  T  L  S  L  I  Q  C  I  K  *  *  L  R  K  I  I  Y  F  *  *  N  V  F  K  F  I  I  L  N  L  L  H  F  L  K  R  I  W  *  Q  H  V  I  T  L  K  S  T  C  *  L  A  P  F  N  H  M  N  V  V  A  V  N  D  *  F  E  R  *  Q  I  I  N  D  I  E  *  G  S  G  G  K  E  L  *  *  S  S  L  W  *  *  *  K  E  E  H  Y  E  F  F  K  *  S  F  K  M  *  R  Q  L  L  L  S  K  W  Y  E  R  L  L  D  L  S  M  L  S  T  P  *  F  D  K  F  I  N  P  L  S  *  H  K  K  I  K  *  W  Y  T  S  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  P  *  Q  C  A  Y  N  A  N  L  *  S  T  Y  K  *  L  V  H  S  L  K  R  M  *  L  V  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  P  N  V  I  K  S  L  *  V  G  Y  M  P  Q  L  A  S  M  E  G  L  R  K  N  D </first_frame>
            <second_frame>  I  R  R  *  I  Q  V  L  S  H  Q  K  G  K  T  S  I  R  V  L  I  H  R  D  W  V  Q  V  P  *  N  Y  G  V  T  R  L  T  W  V  R  H  *  V  *  S  N  A  *  N  D  D  *  E  K  *  Y  I  F  D  E  M  S  L  N  S  S  Y  *  I  C  S  I  S  *  K  E  Y  G  S  N  M  *  *  L  *  N  P  P  V  D  L  L  H  S  I  I  *  M  W  *  Q  *  M  I  S  L  K  D  D  K  *  L  M  I  *  N  K  G  V  E  G  K  N  Y  N  S  H  H  C  G  N  D  K  R  K  N  T  M  S  S  S  N  S  P  S  K  C  E  G  N  F  Y  Y  Q  N  G  M  K  G  Y  *  T  C  Q  C  C  Q  P  H  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  D  G  T  L  H  L  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  V  H  I  N  N  *  F  I  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  K  E  W  V  Q  M  *  *  N  H  Y  R  L  D  I  C  H  N  S  P  L  W  K  V  *  E  K  M   </second_frame>
            <third_frame>   *  D  D  R  F  K  F  Y  L  T  K  R  V  R  H  Q  L  E  F  *  Y  T  V  I  G  F  K  F  H  R  I  M  A  *  H  A  L  H  G  *  D  I  E  F  D  P  M  H  K  M  M  T  K  K  N  N  I  F  L  M  K  C  L  *  I  H  H  I  E  F  A  P  F  L  E  K  N  M  V  A  T  C  D  N  S  E  I  H  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  *  L  V  *  K  M  T  N  N  *  *  Y  R  I  R  E  W  R  E  R  I  I  I  V  I  I  V  V  M  I  K  G  R  T  L  *  V  L  Q  I  V  L  Q  N  V  K  A  T  F  I  I  K  M  V  *  K  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  T  Q  E  D  K  V  M  V  H  F  I  F  Q  S  D  V  E  V  C  H  G  N  M  M  N  F  K  A  M  T  M  C  L  *  C  K  F  M  K  Y  I  *  I  I  S  S  F  L  E  E  N  V  T  C  D  E  Y  R  E  C  S  T  I  L  *  K  N  G  S  K  C  D  K  I  I  I  G  W  I  Y  A  T  T  R  L  Y  G  R  F  E  K  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40603" PGL_stop="35511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40599" e_stop="40541"/>
            <exon e_start="39270" e_stop="39215"/>
            <exon e_start="38997" e_stop="38839"/>
            <exon e_start="35823" e_stop="35511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40599" e_stop="40541" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="40540" i_stop="39271" i_length="1270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39270" e_stop="39215" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.941">
            <gDNA_intron_boundary i_start="39214" i_stop="38998" i_length="217"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38997" e_stop="38839" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.880">
            <gDNA_intron_boundary i_start="38838" i_stop="35824" i_length="3015"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35823" e_stop="35511" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40599" stop="40541"/>
              <exon start="39270" stop="39215"/>
              <exon start="38997" stop="38839"/>
              <exon start="35823" stop="35511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40599" stop="40541"/>
              <exon start="39270" stop="39215"/>
              <exon start="38997" stop="38839"/>
              <exon start="35823" stop="35691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40596" stop="40541"/>
              <exon start="39270" stop="39215"/>
              <exon start="38997" stop="38839"/>
              <exon start="35823" stop="35523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40585" stop="40541"/>
              <exon start="39270" stop="39215"/>
              <exon start="38997" stop="38839"/>
              <exon start="35823" stop="35533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAAT : ATAGCTGCCAAGGATTACAGAGAACACAGTGTGATACTTCCTGAGAGATAAAAATG : TTGTTTTTCTCATACTTCAAGGATCTGGTGGGCAGGGAAGTGACTGTCGAACTGAAGAACGATTTGGCTATTCGAGGAACACTACATTCAGTTGATCAGTATCTCAACATTAAGCTTGAAAACACTAGGGTTGTTGATGAGGACAAGTATCCCCACATG : AGGTCCGTGAGGAACTGCTTCATCAGAGGATCGGTGGTCAGATACGTGCAGTTACCTCCTGATGGAGTTGACATTGAACTGCTTCATGATGCTACGAGGAGAGAAGCTCGGGGTGGCTGAATTCTAGAGTTCGAAATTGGTCTGTTCACATTTCAGTGGATAAGTCAGCAGCAGTATACTGATTTTTCTTACTGGATGCATTTTGCGCGTAGAGGTTTTCTTCATCATCTTAAAATTTAGTATGCAGATGTTATGAATGCCCGTAATGTGAAAATTGTTGATATGATATCTGTCTTTTGACCAAATTAAGAAT</gDNA_template>
            <first_frame> L  K  *  S  T  L  S  A  V  R  R  T  S  T  S  G  E  V  E  I :   *  L  P  R  I  T  E  N  T  V  *  Y  F  L  R  D  K  N   : V  V  F  L  I  L  Q  G  S  G  G  Q  G  S  D  C  R  T  E  E  R  F  G  Y  S  R  N  T  T  F  S  *  S  V  S  Q  H  *  A  *  K  H  *  G  C  *  *  G  Q  V  S  P  H   : E  V  R  E  E  L  L  H  Q  R  I  G  G  Q  I  R  A  V  T  S  *  W  S  *  H  *  T  A  S  *  C  Y  E  E  R  S  S  G  W  L  N  S  R  V  R  N  W  S  V  H  I  S  V  D  K  S  A  A  V  Y  *  F  F  L  L  D  A  F  C  A  *  R  F  S  S  S  S  *  N  L  V  C  R  C  Y  E  C  P  *  C  E  N  C  *  Y  D  I  C  L  L  T  K  L  R   </first_frame>
            <second_frame>  *  S  S  L  P  F  Q  L  Y  D  A  L  P  P  P  A  K  S  K   : Y  S  C  Q  G  L  Q  R  T  Q  C  D  T  S  *  E  I  K  M  :  L  F  F  S  Y  F  K  D  L  V  G  R  E  V  T  V  E  L  K  N  D  L  A  I  R  G  T  L  H  S  V  D  Q  Y  L  N  I  K  L  E  N  T  R  V  V  D  E  D  K  Y  P  H  M  :  R  S  V  R  N  C  F  I  R  G  S  V  V  R  Y  V  Q  L  P  P  D  G  V  D  I  E  L  L  H  D  A  T  R  R  E  A  R  G  G  *  I  L  E  F  E  I  G  L  F  T  F  Q  W  I  S  Q  Q  Q  Y  T  D  F  S  Y  W  M  H  F  A  R  R  G  F  L  H  H  L  K  I  *  Y  A  D  V  M  N  A  R  N  V  K  I  V  D  M  I  S  V  F  *  P  N  *  E  </second_frame>
            <third_frame>   K  V  V  Y  P  F  S  C  T  T  H  F  H  L  R  R  S  R  N  :  I  A  A  K  D  Y  R  E  H  S  V  I  L  P  E  R  *  K  C :   C  F  S  H  T  S  R  I  W  W  A  G  K  *  L  S  N  *  R  T  I  W  L  F  E  E  H  Y  I  Q  L  I  S  I  S  T  L  S  L  K  T  L  G  L  L  M  R  T  S  I  P  T  * :   G  P  *  G  T  A  S  S  E  D  R  W  S  D  T  C  S  Y  L  L  M  E  L  T  L  N  C  F  M  M  L  R  G  E  K  L  G  V  A  E  F  *  S  S  K  L  V  C  S  H  F  S  G  *  V  S  S  S  I  L  I  F  L  T  G  C  I  L  R  V  E  V  F  F  I  I  L  K  F  S  M  Q  M  L  *  M  P  V  M  *  K  L  L  I  *  Y  L  S  F  D  Q  I  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39226" stop="39215"/>
                    <exon start="38997" stop="38839"/>
                    <exon start="35823" stop="35704"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40603" e_stop="39823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="40603" e_stop="39823" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40603" stop="39823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40603" stop="39852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40603" stop="39869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCTAAAGTAGTCTACCCTTTCAGCTGTACGACGCACTTCCACCTCCGGCGAAGTCGAAATGTAAGTTCTCCTCTTTAGATATCTCTGTAACGAAAAAAAAAACCCTAATTCTTCCTTCTAATAGTACTGAATTTCGTTTTTTGTTGCCATGTTTTGTACTGCTACGCACTATAAACAGATCCTTGAATTCGATTTCTCATGTTCCTTTGTGGTTTTTGTTTGTCGTCTTATGTAATGGATTGCTTTTTAAGTTGTGATGGTGTGTATTATGCTGGAAATGATTAAGTTTTGTTGATATTTAGGATTAGGAGAAACAAATAAGTCCGTGCGATGTTTTTTTCTCTCTTCGTTTTTGTTGTTATTTTCCAGAATTTGGGATTGTAGTAAGTGAAAAGCTACAGTTGATTTCATTTCCTAATCAGCCGAAAGAAGTATTTGAATAATATTCCAAATGGGATATTAAGGTGTGTATAGTGTGCTATTGAGTTTTAGTTTATAGATTGGGGGCAGTTTTATAAAAAGCGAGGAAAACCGCACTTAAAGCGCGACGCGAGGCGAAGCACAGCCCCTGCGCTTTTATTTCCTGAAGCACGGCGACATTGAAAAAGAAAAGCGAAAGCGTGAAATAGCGCTAATTACGGTTTTTTGGTTTAAAAAATGTTTTTCTTTTAATTTCTGAAATCCTTAGGCGACTTCACATACCACTTTCGCGATTTCAAGTTTGTTTTTTGGACTGCTGCGACCGCTGCTATAAGTTCTCTTCTTCTCTTCTTCTTTG</gDNA_template>
            <first_frame> A  A  K  V  V  Y  P  F  S  C  T  T  H  F  H  L  R  R  S  R  N  V  S  S  P  L  *  I  S  L  *  R  K  K  K  P  *  F  F  L  L  I  V  L  N  F  V  F  C  C  H  V  L  Y  C  Y  A  L  *  T  D  P  *  I  R  F  L  M  F  L  C  G  F  C  L  S  S  Y  V  M  D  C  F  L  S  C  D  G  V  Y  Y  A  G  N  D  *  V  L  L  I  F  R  I  R  R  N  K  *  V  R  A  M  F  F  S  L  F  V  F  V  V  I  F  Q  N  L  G  L  *  *  V  K  S  Y  S  *  F  H  F  L  I  S  R  K  K  Y  L  N  N  I  P  N  G  I  L  R  C  V  *  C  A  I  E  F  *  F  I  D  W  G  Q  F  Y  K  K  R  G  K  P  H  L  K  R  D  A  R  R  S  T  A  P  A  L  L  F  P  E  A  R  R  H  *  K  R  K  A  K  A  *  N  S  A  N  Y  G  F  L  V  *  K  M  F  F  F  *  F  L  K  S  L  G  D  F  T  Y  H  F  R  D  F  K  F  V  F  W  T  A  A  T  A  A  I  S  S  L  L  L  F  F  F  </first_frame>
            <second_frame>  Q  L  K  *  S  T  L  S  A  V  R  R  T  S  T  S  G  E  V  E  M  *  V  L  L  F  R  Y  L  C  N  E  K  K  N  P  N  S  S  F  *  *  Y  *  I  S  F  F  V  A  M  F  C  T  A  T  H  Y  K  Q  I  L  E  F  D  F  S  C  S  F  V  V  F  V  C  R  L  M  *  W  I  A  F  *  V  V  M  V  C  I  M  L  E  M  I  K  F  C  *  Y  L  G  L  G  E  T  N  K  S  V  R  C  F  F  L  S  S  F  L  L  L  F  S  R  I  W  D  C  S  K  *  K  A  T  V  D  F  I  S  *  S  A  E  R  S  I  *  I  I  F  Q  M  G  Y  *  G  V  Y  S  V  L  L  S  F  S  L  *  I  G  G  S  F  I  K  S  E  E  N  R  T  *  S  A  T  R  G  E  A  Q  P  L  R  F  Y  F  L  K  H  G  D  I  E  K  E  K  R  K  R  E  I  A  L  I  T  V  F  W  F  K  K  C  F  S  F  N  F  *  N  P  *  A  T  S  H  T  T  F  A  I  S  S  L  F  F  G  L  L  R  P  L  L  *  V  L  F  F  S  S  S  L </second_frame>
            <third_frame>   S  *  S  S  L  P  F  Q  L  Y  D  A  L  P  P  P  A  K  S  K  C  K  F  S  S  L  D  I  S  V  T  K  K  K  T  L  I  L  P  S  N  S  T  E  F  R  F  L  L  P  C  F  V  L  L  R  T  I  N  R  S  L  N  S  I  S  H  V  P  L  W  F  L  F  V  V  L  C  N  G  L  L  F  K  L  *  W  C  V  L  C  W  K  *  L  S  F  V  D  I  *  D  *  E  K  Q  I  S  P  C  D  V  F  F  S  L  R  F  C  C  Y  F  P  E  F  G  I  V  V  S  E  K  L  Q  L  I  S  F  P  N  Q  P  K  E  V  F  E  *  Y  S  K  W  D  I  K  V  C  I  V  C  Y  *  V  L  V  Y  R  L  G  A  V  L  *  K  A  R  K  T  A  L  K  A  R  R  E  A  K  H  S  P  C  A  F  I  S  *  S  T  A  T  L  K  K  K  S  E  S  V  K  *  R  *  L  R  F  F  G  L  K  N  V  F  L  L  I  S  E  I  L  R  R  L  H  I  P  L  S  R  F  Q  V  C  F  L  D  C  C  D  R  C  Y  K  F  S  S  S  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40595" stop="40344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLPFQLYDALPPPAKSKCKFSSLDISVTKKKTLILPSNSTEFRFLLPCFVLLRTINRSLNSISHVPLWFLFVVLCNGLLFKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="47185" PGL_stop="41013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47185" e_stop="46524"/>
            <exon e_start="44023" e_stop="43675"/>
            <exon e_start="42574" e_stop="42298"/>
            <exon e_start="41467" e_stop="41013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.997"/>
          <exon-intron don_prob="0.978" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.836" e_score="0.993"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47185" e_stop="46524" e_length="662"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43675" e_length="349"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43674" i_stop="42575" i_length="1100"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="42574" e_stop="42298" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.836">
            <gDNA_intron_boundary i_start="42297" i_stop="41468" i_length="830"/>
          </intron>
          <exon e_serial="4" e_score="0.903">
            <gDNA_exon_boundary e_start="41467" e_stop="41013" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47185" stop="46524"/>
              <exon start="44023" stop="44002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47185" stop="46685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47184" stop="46524"/>
              <exon start="44023" stop="43940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47183" stop="46907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47172" stop="46524"/>
              <exon start="44023" stop="43972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47171" stop="46609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47156" stop="46615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47156" stop="46759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47155" stop="46586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47071" stop="46524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47034" stop="46524"/>
              <exon start="44023" stop="43769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47029" stop="46633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46702" stop="46524"/>
              <exon start="44023" stop="43741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46581" stop="46524"/>
              <exon start="44023" stop="43675"/>
              <exon start="42574" stop="42452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43932" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43932" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43932" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43932" stop="43675"/>
              <exon start="42574" stop="42487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43932" stop="43675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43775" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43774" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43774" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43715" stop="43675"/>
              <exon start="42574" stop="42298"/>
              <exon start="41467" stop="41188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42568" stop="42298"/>
              <exon start="41467" stop="41013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429931" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42566" stop="42298"/>
              <exon start="41467" stop="41101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAACCCTAGAAAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG : GGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAG : GCTCTTCTTCATTTCATGTACTGGGACGTGCTACCGGACATGGAAGAACTCACAGGGTTGAACACAAAATGGGCATCAACCTTGATGTCTCAACATCTGCTTGCGGCAGCTGACTGTTATGGGTTAGATAGGCTCAGGTTGCTCTGTGAGGCTAACCTGTGTGAGGAAGTTGCTATTAATACTGTTGCAACCACTTTAGCCCTGGCTGAACAGCACCATTGTTTCCAGCTGAAATCTGTCTGTCTCAAATTTGTTGCCATGCCAGAAAATCTAAGAG : CTGTAATGCAAACGGATGGTTTTGACTATCTGAGAGAAAGTTGCCCTCATGTCCTCACAGAACTGTTGGAGTATGTTGCTAGGGTAAATGAACATTCCAGCATCACCAACAAGCTAGGGAATGGTCTTGTCCTTGACGGCGGTGATTTCAATGGTCGACGCGTGAAACAAAGATTGTAGTTGAAGTTGTAACTTCATGATGCAGGCTGTAGTTTGACATAGATGTAAATTTGGGTCCGTCAGTGTCATTGATATTGTTGTAATCATCTATATAATTACCTTGTTCCTAGTAATGTTTATTTGTGTATGGTTATTGTGCTACTTGAGGGTCGTCTTGATTAGACAGCTTCTAACTCTTTGTCCATAATATTTCCTTCTGTTATTTTGGTTCTCTGTATTTCATTCAGTTATTTATTTGTTATTTTGGCTCTTGATTTTTCAGTTGAACATGTAATT</gDNA_template>
            <first_frame> T  K  P  *  K  I  P  Q  P  Q  I  Y  R  A  *  I  P  S  P  S  *  K  S  P  I  N  F  A  D  K  P  Q  F  P  T  L  T  *  L  I  S  Y  K  F  L  F  L  N  P  R  S  D  P  H  F  *  I  T  S  V  *  K  K  I  D  *  L  R  W  L  L  L  K  F  S  R  M  V  D  M  G  R  V  E  T  E  A  I  A  K  P  S  S  S  S  S  S  S  S  S  S  S  A  V  T  T  S  T  S  V  T  E  T  V  N  G  S  H  D  F  K  I  T  G  Y  S  L  S  K  G  I  G  I  G  K  Y  I  A  S  D  T  F  M  V  G  G  Y  T  W  A  I  Y  F  Y  P  D  G  K  S  T  E  D  N  S  T  Y  V  S  L  F  I  A  L  A  S  E  G  T  D  V  R  A  L  F  E  L  T  L  I  D  Q  S  G  K  S  R  H  K  V  H  S  H  F  G  R  A  L  E  S  G  P  Y  T  L  K  Y  R  G  S  M  W :   G  Y  K  R  F  F  K  R  T  A  L  E  S  S  D  Y  L  K  D  D  C  L  Q  V  H  C  C  V  G  V  V  R  S  H  T  E  G  P  K  T  Y  S  I  P  L  S  P  S  D  I  G  L  H  F  G  Q  L  L  E  S  G  K  D  T  D  V  N  F  D  V  N  G  E  V  F  A  A  H  K  L  V  L  A  A  R  S  P  V  F  R  A  Q  L  F  G  P  M  K  D  Q  N  T  E  H  I  K  V  E  D  M  E  A  P  V  F  K  :  A  L  L  H  F  M  Y  W  D  V  L  P  D  M  E  E  L  T  G  L  N  T  K  W  A  S  T  L  M  S  Q  H  L  L  A  A  A  D  C  Y  G  L  D  R  L  R  L  L  C  E  A  N  L  C  E  E  V  A  I  N  T  V  A  T  T  L  A  L  A  E  Q  H  H  C  F  Q  L  K  S  V  C  L  K  F  V  A  M  P  E  N  L  R   : A  V  M  Q  T  D  G  F  D  Y  L  R  E  S  C  P  H  V  L  T  E  L  L  E  Y  V  A  R  V  N  E  H  S  S  I  T  N  K  L  G  N  G  L  V  L  D  G  G  D  F  N  G  R  R  V  K  Q  R  L  *  L  K  L  *  L  H  D  A  G  C  S  L  T  *  M  *  I  W  V  R  Q  C  H  *  Y  C  C  N  H  L  Y  N  Y  L  V  P  S  N  V  Y  L  C  M  V  I  V  L  L  E  G  R  L  D  *  T  A  S  N  S  L  S  I  I  F  P  S  V  I  L  V  L  C  I  S  F  S  Y  L  F  V  I  L  A  L  D  F  S  V  E  H  V  I </first_frame>
            <second_frame>  R  N  P  R  K  F  H  N  P  K  F  T  E  P  R  F  H  L  H  R  R  N  L  P  S  I  S  P  I  N  P  N  S  L  P  *  R  S  S  F  P  T  N  F  S  F  *  T  L  D  L  I  H  I  S  E  L  P  Q  F  E  K  K  L  T  D  *  G  G  Y  C  *  N  F  H  V  W  W  T  W  E  G  L  K  Q  R  Q  L  P  N  P  P  H  R  P  H  L  H  H  H  H  L  R  *  P  R  Q  H  R  *  L  R  R  *  M  V  L  M  I  L  R  L  L  G  I  R  C  R  K  G  L  G  L  G  S  I  S  L  L  I  R  L  W  *  V  G  I  R  G  R  F  I  S  I  L  M  G  R  V  L  K  I  I  Q  H  M  C  R  C  S  L  L  *  R  A  K  E  R  M  *  G  R  F  L  S  *  R  *  L  I  R  V  V  R  V  G  I  K  C  I  A  I  L  G  E  R  W  R  V  D  R  T  L  L  N  T  V  E  A  C   : G  D  I  S  D  F  L  K  E  P  L  *  N  H  L  T  T  *  R  M  I  A  C  K  F  I  A  V  L  V  *  *  G  L  T  P  K  D  L  K  H  T  P  F  L  Y  L  H  Q  I  L  D  C  I  L  D  S  Y  L  K  V  G  R  I  L  M  *  T  S  M  L  M  E  R  Y  L  L  L  T  N  W  Y  L  L  Q  G  H  L  C  S  E  H  N  F  L  V  Q  *  R  I  K  I  Q  S  I  *  K  *  K  T  W  K  P  L  F  L  R :   L  F  F  I  S  C  T  G  T  C  Y  R  T  W  K  N  S  Q  G  *  T  Q  N  G  H  Q  P  *  C  L  N  I  C  L  R  Q  L  T  V  M  G  *  I  G  S  G  C  S  V  R  L  T  C  V  R  K  L  L  L  I  L  L  Q  P  L  *  P  W  L  N  S  T  I  V  S  S  *  N  L  S  V  S  N  L  L  P  C  Q  K  I  *  E  :  L  *  C  K  R  M  V  L  T  I  *  E  K  V  A  L  M  S  S  Q  N  C  W  S  M  L  L  G  *  M  N  I  P  A  S  P  T  S  *  G  M  V  L  S  L  T  A  V  I  S  M  V  D  A  *  N  K  D  C  S  *  S  C  N  F  M  M  Q  A  V  V  *  H  R  C  K  F  G  S  V  S  V  I  D  I  V  V  I  I  Y  I  I  T  L  F  L  V  M  F  I  C  V  W  L  L  C  Y  L  R  V  V  L  I  R  Q  L  L  T  L  C  P  *  Y  F  L  L  L  F  W  F  S  V  F  H  S  V  I  Y  L  L  F  W  L  L  I  F  Q  L  N  M  *   </second_frame>
            <third_frame>   E  T  L  E  N  S  T  T  P  N  L  Q  S  L  D  S  I  S  I  V  E  I  S  H  Q  F  R  R  *  T  P  I  P  Y  P  N  V  A  H  F  L  Q  I  S  L  S  K  P  *  I  *  S  T  F  L  N  Y  L  S  L  K  K  N  *  L  I  E  V  V  I  V  E  I  F  T  Y  G  G  H  G  K  G  *  N  R  G  N  C  Q  T  L  L  I  V  L  I  F  I  I  I  I  C  G  D  H  V  N  I  G  D  *  D  G  E  W  F  S  *  F  *  D  Y  W  V  F  V  V  E  R  D  W  D  W  E  V  Y  R  F  *  Y  V  Y  G  R  W  V  Y  V  G  D  L  F  L  S  *  W  E  E  Y  *  R  *  F  N  I  C  V  V  V  H  C  S  S  E  R  R  N  G  C  E  G  A  F  *  A  D  A  D  *  S  E  W  *  E  *  A  *  S  A  *  P  F  W  E  S  V  G  E  W  T  V  H  S  *  I  P  W  K  H  V  :  G  I  *  A  I  F  *  K  N  R  F  R  I  I  *  L  P  E  G  *  L  P  A  S  S  L  L  C  W  C  S  E  V  S  H  R  R  T  *  N  I  L  H  S  S  I  S  I  R  Y  W  T  A  F  W  T  A  T  *  K  W  E  G  Y  *  C  E  L  R  C  *  W  R  G  I  C  C  S  Q  I  G  T  C  C  K  V  T  C  V  Q  S  T  T  F  W  S  N  E  G  S  K  Y  R  A  Y  K  S  R  R  H  G  S  P  C  F  *   : G  S  S  S  F  H  V  L  G  R  A  T  G  H  G  R  T  H  R  V  E  H  K  M  G  I  N  L  D  V  S  T  S  A  C  G  S  *  L  L  W  V  R  *  A  Q  V  A  L  *  G  *  P  V  *  G  S  C  Y  *  Y  C  C  N  H  F  S  P  G  *  T  A  P  L  F  P  A  E  I  C  L  S  Q  I  C  C  H  A  R  K  S  K  S :   C  N  A  N  G  W  F  *  L  S  E  R  K  L  P  S  C  P  H  R  T  V  G  V  C  C  *  G  K  *  T  F  Q  H  H  Q  Q  A  R  E  W  S  C  P  *  R  R  *  F  Q  W  S  T  R  E  T  K  I  V  V  E  V  V  T  S  *  C  R  L  *  F  D  I  D  V  N  L  G  P  S  V  S  L  I  L  L  *  S  S  I  *  L  P  C  S  *  *  C  L  F  V  Y  G  Y  C  A  T  *  G  S  S  *  L  D  S  F  *  L  F  V  H  N  I  S  F  C  Y  F  G  S  L  Y  F  I  Q  L  F  I  C  Y  F  G  S  *  F  F  S  *  T  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46987" stop="46524"/>
                    <exon start="44023" stop="43675"/>
                    <exon start="42574" stop="42298"/>
                    <exon start="41467" stop="41289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWLLLKFSRMVDMGRVETEAIAKPSSSSSSSSSSSAVTTSTSVTETVNGSHDFKITGYSLSKGIGIGKYIASDTFMVGGYTWAIYFYPDGKSTEDNSTYVSLFIALASEGTDVRALFELTLIDQSGKSRHKVHSHFGRALESGPYTLKYRGSMWGYKRFFKRTALESSDYLKDDCLQVHCCVGVVRSHTEGPKTYSIPLSPSDIGLHFGQLLESGKDTDVNFDVNGEVFAAHKLVLAARSPVFRAQLFGPMKDQNTEHIKVEDMEAPVFKALLHFMYWDVLPDMEELTGLNTKWASTLMSQHLLAAADCYGLDRLRLLCEANLCEEVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFDYLRESCPHVLTELLEYVARVNEHSSITNKLGNGLVLDGGDFNGRRVKQRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47185" e_stop="46524"/>
            <exon e_start="44023" e_stop="43487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.997"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="47185" e_stop="46524" e_length="662"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="46523" i_stop="44024" i_length="2500"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="44023" e_stop="43487" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47185" stop="46524"/>
              <exon start="44023" stop="44002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47185" stop="46685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47184" stop="46524"/>
              <exon start="44023" stop="43940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47183" stop="46907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47172" stop="46524"/>
              <exon start="44023" stop="43972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47171" stop="46609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47156" stop="46615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47156" stop="46759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47155" stop="46586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47071" stop="46524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47034" stop="46524"/>
              <exon start="44023" stop="43769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47029" stop="46633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46806" stop="46524"/>
              <exon start="44023" stop="43487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46702" stop="46524"/>
              <exon start="44023" stop="43741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43932" stop="43675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAACCCTAGAAAATTCCACAACCCCAAATTTACAGAGCCTAGATTCCATCTCCATCGTAGAAATCTCCCATCAATTTCGCCGATAAACCCCAATTCCCTACCCTAACGTAGCTCATTTCCTACAAATTTCTCTTTCTAAACCCTAGATCTGATCCACATTTCTGAATTACCTCAGTTTGAAAAAAAATTGACTGATTGAGGTGGTTATTGTTGAAATTTTCACGTATGGTGGACATGGGAAGGGTTGAAACAGAGGCAATTGCCAAACCCTCCTCATCGTCCTCATCTTCATCATCATCATCTGCGGTGACCACGTCAACATCGGTGACTGAGACGGTGAATGGTTCTCATGATTTTAAGATTACTGGGTATTCGTTGTCGAAAGGGATTGGGATTGGGAAGTATATCGCTTCTGATACGTTTATGGTAGGTGGGTATACGTGGGCGATTTATTTCTATCCTGATGGGAAGAGTACTGAAGATAATTCAACATATGTGTCGTTGTTCATTGCTCTAGCGAGCGAAGGAACGGATGTGAGGGCGCTTTTTGAGCTGACGCTGATTGATCAGAGTGGTAAGAGTAGGCATAAAGTGCATAGCCATTTTGGGAGAGCGTTGGAGAGTGGACCGTACACTCTTAAATACCGTGGAAGCATGTG : GGGATATAAGCGATTTTTTAAAAGAACCGCTTTAGAATCATCTGACTACCTGAAGGATGATTGCCTGCAAGTTCATTGCTGTGTTGGTGTAGTGAGGTCTCACACCGAAGGACCTAAAACATACTCCATTCCTCTATCTCCATCAGATATTGGACTGCATTTTGGACAGCTACTTGAAAGTGGGAAGGATACTGATGTGAACTTCGATGTTAATGGAGAGGTATTTGCTGCTCACAAATTGGTACTTGCTGCAAGGTCACCTGTGTTCAGAGCACAACTTTTTGGTCCAATGAAGGATCAAAATACAGAGCATATAAAAGTAGAAGACATGGAAGCCCCTGTTTTTAAGGTCAAAGCCTTGTACTACCTCCCACCCCTTTCCTGCCTTTATGTTGATTTGACTGCTTGTTGTGTACTATCAATAACACAATCTGTAAGTTTTCAAGTCACCACCTGTTAATAATCTGGAAAGCTATGCTACTACCGAACTTCTAATTCTTCTATTCTCTCAGTTGTCATTGCTTCTTCTATCACAGT</gDNA_template>
            <first_frame> T  K  P  *  K  I  P  Q  P  Q  I  Y  R  A  *  I  P  S  P  S  *  K  S  P  I  N  F  A  D  K  P  Q  F  P  T  L  T  *  L  I  S  Y  K  F  L  F  L  N  P  R  S  D  P  H  F  *  I  T  S  V  *  K  K  I  D  *  L  R  W  L  L  L  K  F  S  R  M  V  D  M  G  R  V  E  T  E  A  I  A  K  P  S  S  S  S  S  S  S  S  S  S  S  A  V  T  T  S  T  S  V  T  E  T  V  N  G  S  H  D  F  K  I  T  G  Y  S  L  S  K  G  I  G  I  G  K  Y  I  A  S  D  T  F  M  V  G  G  Y  T  W  A  I  Y  F  Y  P  D  G  K  S  T  E  D  N  S  T  Y  V  S  L  F  I  A  L  A  S  E  G  T  D  V  R  A  L  F  E  L  T  L  I  D  Q  S  G  K  S  R  H  K  V  H  S  H  F  G  R  A  L  E  S  G  P  Y  T  L  K  Y  R  G  S  M  W :   G  Y  K  R  F  F  K  R  T  A  L  E  S  S  D  Y  L  K  D  D  C  L  Q  V  H  C  C  V  G  V  V  R  S  H  T  E  G  P  K  T  Y  S  I  P  L  S  P  S  D  I  G  L  H  F  G  Q  L  L  E  S  G  K  D  T  D  V  N  F  D  V  N  G  E  V  F  A  A  H  K  L  V  L  A  A  R  S  P  V  F  R  A  Q  L  F  G  P  M  K  D  Q  N  T  E  H  I  K  V  E  D  M  E  A  P  V  F  K  V  K  A  L  Y  Y  L  P  P  L  S  C  L  Y  V  D  L  T  A  C  C  V  L  S  I  T  Q  S  V  S  F  Q  V  T  T  C  *  *  S  G  K  L  C  Y  Y  R  T  S  N  S  S  I  L  S  V  V  I  A  S  S  I  T   </first_frame>
            <second_frame>  R  N  P  R  K  F  H  N  P  K  F  T  E  P  R  F  H  L  H  R  R  N  L  P  S  I  S  P  I  N  P  N  S  L  P  *  R  S  S  F  P  T  N  F  S  F  *  T  L  D  L  I  H  I  S  E  L  P  Q  F  E  K  K  L  T  D  *  G  G  Y  C  *  N  F  H  V  W  W  T  W  E  G  L  K  Q  R  Q  L  P  N  P  P  H  R  P  H  L  H  H  H  H  L  R  *  P  R  Q  H  R  *  L  R  R  *  M  V  L  M  I  L  R  L  L  G  I  R  C  R  K  G  L  G  L  G  S  I  S  L  L  I  R  L  W  *  V  G  I  R  G  R  F  I  S  I  L  M  G  R  V  L  K  I  I  Q  H  M  C  R  C  S  L  L  *  R  A  K  E  R  M  *  G  R  F  L  S  *  R  *  L  I  R  V  V  R  V  G  I  K  C  I  A  I  L  G  E  R  W  R  V  D  R  T  L  L  N  T  V  E  A  C   : G  D  I  S  D  F  L  K  E  P  L  *  N  H  L  T  T  *  R  M  I  A  C  K  F  I  A  V  L  V  *  *  G  L  T  P  K  D  L  K  H  T  P  F  L  Y  L  H  Q  I  L  D  C  I  L  D  S  Y  L  K  V  G  R  I  L  M  *  T  S  M  L  M  E  R  Y  L  L  L  T  N  W  Y  L  L  Q  G  H  L  C  S  E  H  N  F  L  V  Q  *  R  I  K  I  Q  S  I  *  K  *  K  T  W  K  P  L  F  L  R  S  K  P  C  T  T  S  H  P  F  P  A  F  M  L  I  *  L  L  V  V  Y  Y  Q  *  H  N  L  *  V  F  K  S  P  P  V  N  N  L  E  S  Y  A  T  T  E  L  L  I  L  L  F  S  Q  L  S  L  L  L  L  S  Q  </second_frame>
            <third_frame>   E  T  L  E  N  S  T  T  P  N  L  Q  S  L  D  S  I  S  I  V  E  I  S  H  Q  F  R  R  *  T  P  I  P  Y  P  N  V  A  H  F  L  Q  I  S  L  S  K  P  *  I  *  S  T  F  L  N  Y  L  S  L  K  K  N  *  L  I  E  V  V  I  V  E  I  F  T  Y  G  G  H  G  K  G  *  N  R  G  N  C  Q  T  L  L  I  V  L  I  F  I  I  I  I  C  G  D  H  V  N  I  G  D  *  D  G  E  W  F  S  *  F  *  D  Y  W  V  F  V  V  E  R  D  W  D  W  E  V  Y  R  F  *  Y  V  Y  G  R  W  V  Y  V  G  D  L  F  L  S  *  W  E  E  Y  *  R  *  F  N  I  C  V  V  V  H  C  S  S  E  R  R  N  G  C  E  G  A  F  *  A  D  A  D  *  S  E  W  *  E  *  A  *  S  A  *  P  F  W  E  S  V  G  E  W  T  V  H  S  *  I  P  W  K  H  V  :  G  I  *  A  I  F  *  K  N  R  F  R  I  I  *  L  P  E  G  *  L  P  A  S  S  L  L  C  W  C  S  E  V  S  H  R  R  T  *  N  I  L  H  S  S  I  S  I  R  Y  W  T  A  F  W  T  A  T  *  K  W  E  G  Y  *  C  E  L  R  C  *  W  R  G  I  C  C  S  Q  I  G  T  C  C  K  V  T  C  V  Q  S  T  T  F  W  S  N  E  G  S  K  Y  R  A  Y  K  S  R  R  H  G  S  P  C  F  *  G  Q  S  L  V  L  P  P  T  P  F  L  P  L  C  *  F  D  C  L  L  C  T  I  N  N  T  I  C  K  F  S  S  H  H  L  L  I  I  W  K  A  M  L  L  P  N  F  *  F  F  Y  S  L  S  C  H  C  F  F  Y  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46987" stop="46524"/>
                    <exon start="44023" stop="43564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWLLLKFSRMVDMGRVETEAIAKPSSSSSSSSSSSAVTTSTSVTETVNGSHDFKITGYSLSKGIGIGKYIASDTFMVGGYTWAIYFYPDGKSTEDNSTYVSLFIALASEGTDVRALFELTLIDQSGKSRHKVHSHFGRALESGPYTLKYRGSMWGYKRFFKRTALESSDYLKDDCLQVHCCVGVVRSHTEGPKTYSIPLSPSDIGLHFGQLLESGKDTDVNFDVNGEVFAAHKLVLAARSPVFRAQLFGPMKDQNTEHIKVEDMEAPVFKVKALYYLPPLSCLYVDLTACCVLSITQSVSFQVTTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="43544" PGL_stop="44024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43544" e_stop="44024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="43544" e_stop="44024" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43544" stop="44024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCATAGCTTTCCAGATTATTAACAGGTGGTGACTTGAAAACTTACAGATTGTGTTATTGATAGTACACAACAAGCAGTCAAATCAACATAAAGGCAGGAAAGGGGTGGGAGGTAGTACAAGGCTTTGACCTTAAAAACAGGGGCTTCCATGTCTTCTACTTTTATATGCTCTGTATTTTGATCCTTCATTGGACCAAAAAGTTGTGCTCTGAACACAGGTGACCTTGCAGCAAGTACCAATTTGTGAGCAGCAAATACCTCTCCATTAACATCGAAGTTCACATCAGTATCCTTCCCACTTTCAAGTAGCTGTCCAAAATGCAGTCCAATATCTGATGGAGATAGAGGAATGGAGTATGTTTTAGGTCCTTCGGTGTGAGACCTCACTACACCAACACAGCAATGAACTTGCAGGCAATCATCCTTCAGGTAGTCAGATGATTCTAAAGCGGTTCTTTTAAAAAATCGCTTATATCCCC</gDNA_template>
            <first_frame> *  H  S  F  P  D  Y  *  Q  V  V  T  *  K  L  T  D  C  V  I  D  S  T  Q  Q  A  V  K  S  T  *  R  Q  E  R  G  G  R  *  Y  K  A  L  T  L  K  T  G  A  S  M  S  S  T  F  I  C  S  V  F  *  S  F  I  G  P  K  S  C  A  L  N  T  G  D  L  A  A  S  T  N  L  *  A  A  N  T  S  P  L  T  S  K  F  T  S  V  S  F  P  L  S  S  S  C  P  K  C  S  P  I  S  D  G  D  R  G  M  E  Y  V  L  G  P  S  V  *  D  L  T  T  P  T  Q  Q  *  T  C  R  Q  S  S  F  R  *  S  D  D  S  K  A  V  L  L  K  N  R  L  Y  P  </first_frame>
            <second_frame>  S  I  A  F  Q  I  I  N  R  W  *  L  E  N  L  Q  I  V  L  L  I  V  H  N  K  Q  S  N  Q  H  K  G  R  K  G  V  G  G  S  T  R  L  *  P  *  K  Q  G  L  P  C  L  L  L  L  Y  A  L  Y  F  D  P  S  L  D  Q  K  V  V  L  *  T  Q  V  T  L  Q  Q  V  P  I  C  E  Q  Q  I  P  L  H  *  H  R  S  S  H  Q  Y  P  S  H  F  Q  V  A  V  Q  N  A  V  Q  Y  L  M  E  I  E  E  W  S  M  F  *  V  L  R  C  E  T  S  L  H  Q  H  S  N  E  L  A  G  N  H  P  S  G  S  Q  M  I  L  K  R  F  F  *  K  I  A  Y  I  P </second_frame>
            <third_frame>   A  *  L  S  R  L  L  T  G  G  D  L  K  T  Y  R  L  C  Y  *  *  Y  T  T  S  S  Q  I  N  I  K  A  G  K  G  W  E  V  V  Q  G  F  D  L  K  N  R  G  F  H  V  F  Y  F  Y  M  L  C  I  L  I  L  H  W  T  K  K  L  C  S  E  H  R  *  P  C  S  K  Y  Q  F  V  S  S  K  Y  L  S  I  N  I  E  V  H  I  S  I  L  P  T  F  K  *  L  S  K  M  Q  S  N  I  *  W  R  *  R  N  G  V  C  F  R  S  F  G  V  R  P  H  Y  T  N  T  A  M  N  L  Q  A  I  I  L  Q  V  V  R  *  F  *  S  G  S  F  K  K  S  L  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51168" PGL_stop="50721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51168" e_stop="50721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="51168" e_stop="50721" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51168" stop="50847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51168" stop="50863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51167" stop="50721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGCATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATATAATTCTCTCTCGCTTTATACAAAACATAAACAAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGAAGAGACACGCTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  M  K  I  Y  I  F  A  C  V  Y  I  I  L  S  R  F  I  Q  N  I  N  K  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  D  T  L  T  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  A  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  *  R  Y  T  F  L  H  V  Y  I  *  F  S  L  A  L  Y  K  T  *  T  K  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  E  E  T  R  *  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  H  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  S  L  S  L  Y  T  K  H  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  K  R  H  A  D  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52077" PGL_stop="57945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52077" e_stop="52420"/>
            <exon e_start="53570" e_stop="53750"/>
            <exon e_start="54204" e_stop="54651"/>
            <exon e_start="56325" e_stop="56399"/>
            <exon e_start="57051" e_stop="57945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.619" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52077" e_stop="52420" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52421" i_stop="53569" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53570" e_stop="53750" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="53751" i_stop="54203" i_length="453"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54204" e_stop="54651" e_length="448"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54652" i_stop="56324" i_length="1673"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56325" e_stop="56399" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.619">
            <gDNA_intron_boundary i_start="56400" i_stop="57050" i_length="651"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="57051" e_stop="57945" e_length="895"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52077" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52107" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54651"/>
              <exon start="56325" stop="56399"/>
              <exon start="57051" stop="57778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52133" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52134" stop="52420"/>
              <exon start="53570" stop="53612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52164" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52181" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52181" stop="52420"/>
              <exon start="53570" stop="53722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52236" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52237" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52241" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52242" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52250" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52251" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52263" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52330" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52336" stop="52420"/>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53570" stop="53750"/>
              <exon start="54204" stop="54554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53727" stop="53750"/>
              <exon start="54204" stop="54651"/>
              <exon start="56325" stop="56399"/>
              <exon start="57051" stop="57069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53727" stop="53750"/>
              <exon start="54204" stop="54554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57237" stop="57672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57396" stop="57945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57396" stop="57945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57423" stop="57808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57555" stop="57811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCACCACAAATCTAAGAAGAATCCAAAAACATAGAAAGTTGAAAGCTTTAATTTTGTCAAGATTCAAGAATCCAACCAAAAAGATGTAACCCCTAATTTCTGAAGGGCCATTAAGTTTTGTAAACCACCAAATTGCAATAAAATCTAGGGAACTTAAGGTGAATAGCAGGATAAGCCCCTGATGCTGTGACTATCAATAAACCAACCATAAAGAAGAGATTTTTGGGTCAGAAACTCAAGTTTCTGAGTTGGGTTTCTCTTAATCATGGTTGAACGTTGTCTTATGGCTTCTCATGGTTATCCTCCGTGGCTTTTTTCACCTCCTGAATTGAGGGTTTTAAAG : GATAGTCTTCCTTTTTTTCCTAGTCCTGGAGTGAATCAAGATATTGTGAAGTCAAGTTGTGCTAGCGTAAGGTTTAACCAGAGACTGGATTTATGGAAACCGATGAGTCGGTTATTGGCAGGCAATCCCTTTGTCAGAATTCTATCAACCTCTGAAGGACCAGAACTCATAGATGCACGAG : ACGATCATTTGAACTCAGTGCTCTTGAGCTTTGGGATTGCTGAACAATGCACAAGGCAGGAGAATATTCTGAAGTACCTTAGATCTGGATCAAATGATGTAGAAAGCGGTGAAATAGATATAGCTATACTCTTTGATCTCATGGGACCACTGGTACATGCGATAAACATGCATCAACAACAATTTCCTTCTTATCTCGAACAACAATCTCGTGATGCTCAGCCATCTCTTGTTTATCCAAGTGCTGCGCTCCACCTATGGGAACCTTCTTCAAATTTGATAGGACTCGATTCAGGAAAAATGATTCATTCTGATGGTCGTCTATTAGTTAGTGGTGTCACTGCTAGCATTGAGATGAAGGACATACTTTCAATTATCTCCGAGTTCTACTTCTCAAAGGACTCAATGAAATGCACAAAGCATGCAATGGTGGTTCCGTACTTTGACAG : GAAGACATGCAAGACAAAGTCCAAAGGTGAAAGTTCTGCTCAGAAACTTGACGTGAATGCATCATCTCTACGGAG : TCCTCAGAAAACTAAGTACCAGACATCACCTCAGAGAAAGAGCAACAAGAGAGCAGTTAAAGAGAGTGAGATCTACAGGAACAATTACCTCCATGCATGTGAAAGCCTTCTGTCCATAATAGTTGACAAGAAACGGCATGGAAAAACTGCGATACTTTCATTGAAGAAATCGGGTCCCCAACTACCAAATTTTCTGACCACGTTCTCTGCTACCATCGCTGGAACTGGCATAGCCGTCCTTTTCTCAATTGCCTGCAGACTAGCCTGTGGAAGAATCGTGTTCTCTGCACCTAGACTATTGAACACTGGTTTAGGCCTTGGACTTATATGGCTCTCTTGGGCTGTCAATAATTTGAGGGACACAGTTGTGGTGATCAACAGAAGTTCAGGCAAGTTGGATATGATAGAAGATGACATGATGAATAATTTGGACAAAAATGTGAAGGAAATCTACTTCAGAGCAGCAACTTTGCTGGCAGTCGTAGTGCTGAGGCTTGCTTGATTTCAAGAACACAAGATTTAGAGATTGTAAAAACATGCACAGCTCGGGGGATGATATCAATAGCTCGTTTTGGGACATTCAACTGTAATATAGTATTTGAGCAGAAAGAACTGGATTTTTTCACAGCACGAAACATGTAGTGAGTAACAAAGTTTCAAGCCCTTTCTACTCGTCTAGTTTGTTTTGTAGCGGAGTCTTGTATAATGATGTGCACGAGAGTTTCTAAGCTATTCGGATCTTGAAAAAGAATTTTGACATTATGTTCAGCAGCCTAATTTTAATTCATTCAAACAAAGTTGAATAATTACTACTGGCCACAAAAGGATACAGAACCACAGAAGGCTGTGTGCTTTAATGGTCAAGTATACATCTTTTCCCTGCTACATTAAGTCT</gDNA_template>
            <first_frame> C  T  T  N  L  R  R  I  Q  K  H  R  K  L  K  A  L  I  L  S  R  F  K  N  P  T  K  K  M  *  P  L  I  S  E  G  P  L  S  F  V  N  H  Q  I  A  I  K  S  R  E  L  K  V  N  S  R  I  S  P  *  C  C  D  Y  Q  *  T  N  H  K  E  E  I  F  G  S  E  T  Q  V  S  E  L  G  F  S  *  S  W  L  N  V  V  L  W  L  L  M  V  I  L  R  G  F  F  H  L  L  N  *  G  F  *  R :   I  V  F  L  F  F  L  V  L  E  *  I  K  I  L  *  S  Q  V  V  L  A  *  G  L  T  R  D  W  I  Y  G  N  R  *  V  G  Y  W  Q  A  I  P  L  S  E  F  Y  Q  P  L  K  D  Q  N  S  *  M  H  E  :  T  I  I  *  T  Q  C  S  *  A  L  G  L  L  N  N  A  Q  G  R  R  I  F  *  S  T  L  D  L  D  Q  M  M  *  K  A  V  K  *  I  *  L  Y  S  L  I  S  W  D  H  W  Y  M  R  *  T  C  I  N  N  N  F  L  L  I  S  N  N  N  L  V  M  L  S  H  L  L  F  I  Q  V  L  R  S  T  Y  G  N  L  L  Q  I  *  *  D  S  I  Q  E  K  *  F  I  L  M  V  V  Y  *  L  V  V  S  L  L  A  L  R  *  R  T  Y  F  Q  L  S  P  S  S  T  S  Q  R  T  Q  *  N  A  Q  S  M  Q  W  W  F  R  T  L  T   : G  R  H  A  R  Q  S  P  K  V  K  V  L  L  R  N  L  T  *  M  H  H  L  Y  G   : V  L  R  K  L  S  T  R  H  H  L  R  E  R  A  T  R  E  Q  L  K  R  V  R  S  T  G  T  I  T  S  M  H  V  K  A  F  C  P  *  *  L  T  R  N  G  M  E  K  L  R  Y  F  H  *  R  N  R  V  P  N  Y  Q  I  F  *  P  R  S  L  L  P  S  L  E  L  A  *  P  S  F  S  Q  L  P  A  D  *  P  V  E  E  S  C  S  L  H  L  D  Y  *  T  L  V  *  A  L  D  L  Y  G  S  L  G  L  S  I  I  *  G  T  Q  L  W  *  S  T  E  V  Q  A  S  W  I  *  *  K  M  T  *  *  I  I  W  T  K  M  *  R  K  S  T  S  E  Q  Q  L  C  W  Q  S  *  C  *  G  L  L  D  F  K  N  T  R  F  R  D  C  K  N  M  H  S  S  G  D  D  I  N  S  S  F  W  D  I  Q  L  *  Y  S  I  *  A  E  R  T  G  F  F  H  S  T  K  H  V  V  S  N  K  V  S  S  P  F  Y  S  S  S  L  F  C  S  G  V  L  Y  N  D  V  H  E  S  F  *  A  I  R  I  L  K  K  N  F  D  I  M  F  S  S  L  I  L  I  H  S  N  K  V  E  *  L  L  L  A  T  K  G  Y  R  T  T  E  G  C  V  L  *  W  S  S  I  H  L  F  P  A  T  L  S   </first_frame>
            <second_frame>  A  P  Q  I  *  E  E  S  K  N  I  E  S  *  K  L  *  F  C  Q  D  S  R  I  Q  P  K  R  C  N  P  *  F  L  K  G  H  *  V  L  *  T  T  K  L  Q  *  N  L  G  N  L  R  *  I  A  G  *  A  P  D  A  V  T  I  N  K  P  T  I  K  K  R  F  L  G  Q  K  L  K  F  L  S  W  V  S  L  N  H  G  *  T  L  S  Y  G  F  S  W  L  S  S  V  A  F  F  T  S  *  I  E  G  F  K   : G  *  S  S  F  F  S  *  S  W  S  E  S  R  Y  C  E  V  K  L  C  *  R  K  V  *  P  E  T  G  F  M  E  T  D  E  S  V  I  G  R  Q  S  L  C  Q  N  S  I  N  L  *  R  T  R  T  H  R  C  T  R :   R  S  F  E  L  S  A  L  E  L  W  D  C  *  T  M  H  K  A  G  E  Y  S  E  V  P  *  I  W  I  K  *  C  R  K  R  *  N  R  Y  S  Y  T  L  *  S  H  G  T  T  G  T  C  D  K  H  A  S  T  T  I  S  F  L  S  R  T  T  I  S  *  C  S  A  I  S  C  L  S  K  C  C  A  P  P  M  G  T  F  F  K  F  D  R  T  R  F  R  K  N  D  S  F  *  W  S  S  I  S  *  W  C  H  C  *  H  *  D  E  G  H  T  F  N  Y  L  R  V  L  L  L  K  G  L  N  E  M  H  K  A  C  N  G  G  S  V  L  *  Q  :  E  D  M  Q  D  K  V  Q  R  *  K  F  C  S  E  T  *  R  E  C  I  I  S  T  E  :  S  S  E  N  *  V  P  D  I  T  S  E  K  E  Q  Q  E  S  S  *  R  E  *  D  L  Q  E  Q  L  P  P  C  M  *  K  P  S  V  H  N  S  *  Q  E  T  A  W  K  N  C  D  T  F  I  E  E  I  G  S  P  T  T  K  F  S  D  H  V  L  C  Y  H  R  W  N  W  H  S  R  P  F  L  N  C  L  Q  T  S  L  W  K  N  R  V  L  C  T  *  T  I  E  H  W  F  R  P  W  T  Y  M  A  L  L  G  C  Q  *  F  E  G  H  S  C  G  D  Q  Q  K  F  R  Q  V  G  Y  D  R  R  *  H  D  E  *  F  G  Q  K  C  E  G  N  L  L  Q  S  S  N  F  A  G  S  R  S  A  E  A  C  L  I  S  R  T  Q  D  L  E  I  V  K  T  C  T  A  R  G  M  I  S  I  A  R  F  G  T  F  N  C  N  I  V  F  E  Q  K  E  L  D  F  F  T  A  R  N  M  *  *  V  T  K  F  Q  A  L  S  T  R  L  V  C  F  V  A  E  S  C  I  M  M  C  T  R  V  S  K  L  F  G  S  *  K  R  I  L  T  L  C  S  A  A  *  F  *  F  I  Q  T  K  L  N  N  Y  Y  W  P  Q  K  D  T  E  P  Q  K  A  V  C  F  N  G  Q  V  Y  I  F  S  L  L  H  *  V  </second_frame>
            <third_frame>   H  H  K  S  K  K  N  P  K  T  *  K  V  E  S  F  N  F  V  K  I  Q  E  S  N  Q  K  D  V  T  P  N  F  *  R  A  I  K  F  C  K  P  P  N  C  N  K  I  *  G  T  *  G  E  *  Q  D  K  P  L  M  L  *  L  S  I  N  Q  P  *  R  R  D  F  W  V  R  N  S  S  F  *  V  G  F  L  L  I  M  V  E  R  C  L  M  A  S  H  G  Y  P  P  W  L  F  S  P  P  E  L  R  V  L  K  :  D  S  L  P  F  F  P  S  P  G  V  N  Q  D  I  V  K  S  S  C  A  S  V  R  F  N  Q  R  L  D  L  W  K  P  M  S  R  L  L  A  G  N  P  F  V  R  I  L  S  T  S  E  G  P  E  L  I  D  A  R   : D  D  H  L  N  S  V  L  L  S  F  G  I  A  E  Q  C  T  R  Q  E  N  I  L  K  Y  L  R  S  G  S  N  D  V  E  S  G  E  I  D  I  A  I  L  F  D  L  M  G  P  L  V  H  A  I  N  M  H  Q  Q  Q  F  P  S  Y  L  E  Q  Q  S  R  D  A  Q  P  S  L  V  Y  P  S  A  A  L  H  L  W  E  P  S  S  N  L  I  G  L  D  S  G  K  M  I  H  S  D  G  R  L  L  V  S  G  V  T  A  S  I  E  M  K  D  I  L  S  I  I  S  E  F  Y  F  S  K  D  S  M  K  C  T  K  H  A  M  V  V  P  Y  F  D  R :   K  T  C  K  T  K  S  K  G  E  S  S  A  Q  K  L  D  V  N  A  S  S  L  R  S :   P  Q  K  T  K  Y  Q  T  S  P  Q  R  K  S  N  K  R  A  V  K  E  S  E  I  Y  R  N  N  Y  L  H  A  C  E  S  L  L  S  I  I  V  D  K  K  R  H  G  K  T  A  I  L  S  L  K  K  S  G  P  Q  L  P  N  F  L  T  T  F  S  A  T  I  A  G  T  G  I  A  V  L  F  S  I  A  C  R  L  A  C  G  R  I  V  F  S  A  P  R  L  L  N  T  G  L  G  L  G  L  I  W  L  S  W  A  V  N  N  L  R  D  T  V  V  V  I  N  R  S  S  G  K  L  D  M  I  E  D  D  M  M  N  N  L  D  K  N  V  K  E  I  Y  F  R  A  A  T  L  L  A  V  V  V  L  R  L  A  *  F  Q  E  H  K  I  *  R  L  *  K  H  A  Q  L  G  G  *  Y  Q  *  L  V  L  G  H  S  T  V  I  *  Y  L  S  R  K  N  W  I  F  S  Q  H  E  T  C  S  E  *  Q  S  F  K  P  F  L  L  V  *  F  V  L  *  R  S  L  V  *  *  C  A  R  E  F  L  S  Y  S  D  L  E  K  E  F  *  H  Y  V  Q  Q  P  N  F  N  S  F  K  Q  S  *  I  I  T  T  G  H  K  R  I  Q  N  H  R  R  L  C  A  L  M  V  K  Y  T  S  F  P  C  Y  I  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52325" stop="52420"/>
                    <exon start="53570" stop="53750"/>
                    <exon start="54204" stop="54651"/>
                    <exon start="56325" stop="56399"/>
                    <exon start="57051" stop="57552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGFLLIMVERCLMASHGYPPWLFSPPELRVLKDSLPFFPSPGVNQDIVKSSCASVRFNQRLDLWKPMSRLLAGNPFVRILSTSEGPELIDARDDHLNSVLLSFGIAEQCTRQENILKYLRSGSNDVESGEIDIAILFDLMGPLVHAINMHQQQFPSYLEQQSRDAQPSLVYPSAALHLWEPSSNLIGLDSGKMIHSDGRLLVSGVTASIEMKDILSIISEFYFSKDSMKCTKHAMVVPYFDRKTCKTKSKGESSAQKLDVNASSLRSPQKTKYQTSPQRKSNKRAVKESEIYRNNYLHACESLLSIIVDKKRHGKTAILSLKKSGPQLPNFLTTFSATIAGTGIAVLFSIACRLACGRIVFSAPRLLNTGLGLGLIWLSWAVNNLRDTVVVINRSSGKLDMIEDDMMNNLDKNVKEIYFRAATLLAVVVLRLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="64509" PGL_stop="57993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64509" e_stop="64266"/>
            <exon e_start="64116" e_stop="64041"/>
            <exon e_start="63754" e_stop="63662"/>
            <exon e_start="63579" e_stop="63505"/>
            <exon e_start="61998" e_stop="61894"/>
            <exon e_start="61806" e_stop="61716"/>
            <exon e_start="61597" e_stop="61392"/>
            <exon e_start="61095" e_stop="61012"/>
            <exon e_start="60400" e_stop="60338"/>
            <exon e_start="60247" e_stop="60185"/>
            <exon e_start="59838" e_stop="59598"/>
            <exon e_start="58631" e_stop="58197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.339" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.177" acc_prob="0.900" e_score="1.000"/>
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              <exon start="58631" stop="58197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419607" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59831" stop="59598"/>
              <exon start="58631" stop="58304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59813" stop="59598"/>
              <exon start="58631" stop="58308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559300" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59802" stop="59598"/>
              <exon start="58631" stop="58208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59715" stop="59598"/>
              <exon start="58631" stop="58338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423677" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59675" stop="59598"/>
              <exon start="58631" stop="58294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417661" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59632" stop="59598"/>
              <exon start="58631" stop="58320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACCTAAACCCTTCAAATACCCCTCAACGCCATTTCCAGCTTCGTAGCTTCTTCAATGGCGTCCGTCGTTTTCAGAAATCCCAATTCGAAGCGCGTGTTGTCACTCTCTCCTCAAATCTACTCGTGTTGTAGAGGAGGATCAGTTTCCACTCAGTTTTTGCTCTCCGAAACGAAAAATGGAAATGATACTTCCAGTCTTTCTAATCCATGGTGGAGATCTATGGCCACCTTCACTCGAAC : AAAACCTCATGTAAATGTGGGAACTATAGGACACGTTGATCATGGAAAGACTACTCTTACTGCTGCAATTACAAAG : GTTCTAGCAGAAGAAGGAAAGGCCAAGGCAATTGCATTTGATGAAATTGACAAAGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCTACA : GCCCACGTGGAGTATGAGACAGCTAAAAGACATTATGCTCATGTTGACTGCCCAGGACACGCGGATTACGTTAAA : AATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATTCTAGTTGTATCTGCTCCAGATGGACCTATGCCGCAAACAAAGGAGCATATTCTTCTTGCCCGCCAG : GTCGGTGTGCCCTCTCTTGTCTGCTTTTTAAACAAAGTTGATGCTGTTGACGATCCTGAGCTGCTGGAACTTGTTGAAATGGAGCTTCGAG : AACTTCTTAGTTTCTACAAGTTTCCTGGGGATGAAATTCCTATCATCCGTGGTTCAGCTCTTTCTGCTTTACAGGGAACTAATGAAGAAATTGGAAAGAAAGCTATTTTAAAGTTGATGGATGCTGTAGATGAATACATTCCAGATCCAGTGCGTCAGCTTGATAAACCATTCTTAATGCCAGTAGAAGATGTATTTTCAATTCAG : GGACGTGGAACTGTTGCTACTGGCCGTATTGAACAGGGAACAATAAAAGTTGGAGAGGATGTGGAGATTTTAGGGCTGATGCAG : GGAACCTTAAAATCTACAGTGACTGGTGTCGAAATGTTCAAGAAGATCTTGGATAATGGTCAA : GCTGGTGATAATGTCGGGCTTCTTCTACGTGGCTTGAAACGAGAAGATATTACACGAGGAATG : GTAATTGCAAAGCCTGGTAGTGTGAAAACGTCCAAGAAATTTGAGGCAGAAATATACGTACTAACTAAGGATGAAGGTGGTCGGCACACTGCTTTTTTCTCAAACTATAGGCCTCAGTTCTACATGAGAACTGCTGACATTACCGGTAAAGTGGAGTTGCCTGAAAATGTCAAGATGGTTATGCCCGGTGATAATGTTACAGCTACCTTTGAGCTGATATCTCCAGTTCCTCTTGAAACAG : GACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGAGCCGTTTGCTT</gDNA_template>
            <first_frame> K  K  P  K  P  F  K  Y  P  S  T  P  F  P  A  S  *  L  L  Q  W  R  P  S  F  S  E  I  P  I  R  S  A  C  C  H  S  L  L  K  S  T  R  V  V  E  E  D  Q  F  P  L  S  F  C  S  P  K  R  K  M  E  M  I  L  P  V  F  L  I  H  G  G  D  L  W  P  P  S  L  E   : Q  N  L  M  *  M  W  E  L  *  D  T  L  I  M  E  R  L  L  L  L  L  Q  L  Q  R :   F  *  Q  K  K  E  R  P  R  Q  L  H  L  M  K  L  T  K  P  L  K  R  R  R  E  E  L  L  L  L  Q :   P  T  W  S  M  R  Q  L  K  D  I  M  L  M  L  T  A  Q  D  T  R  I  T  L  K :   I  *  L  P  E  L  P  K  W  M  V  V  F  *  L  Y  L  L  Q  M  D  L  C  R  K  Q  R  S  I  F  F  L  P  A  R :   S  V  C  P  L  L  S  A  F  *  T  K  L  M  L  L  T  I  L  S  C  W  N  L  L  K  W  S  F  E  :  N  F  L  V  S  T  S  F  L  G  M  K  F  L  S  S  V  V  Q  L  F  L  L  Y  R  E  L  M  K  K  L  E  R  K  L  F  *  S  *  W  M  L  *  M  N  T  F  Q  I  Q  C  V  S  L  I  N  H  S  *  C  Q  *  K  M  Y  F  Q  F  R :   D  V  E  L  L  L  L  A  V  L  N  R  E  Q  *  K  L  E  R  M  W  R  F  *  G  *  C  R :   E  P  *  N  L  Q  *  L  V  S  K  C  S  R  R  S  W  I  M  V  K :   L  V  I  M  S  G  F  F  Y  V  A  *  N  E  K  I  L  H  E  E  W :   *  L  Q  S  L  V  V  *  K  R  P  R  N  L  R  Q  K  Y  T  Y  *  L  R  M  K  V  V  G  T  L  L  F  S  Q  T  I  G  L  S  S  T  *  E  L  L  T  L  P  V  K  W  S  C  L  K  M  S  R  W  L  C  P  V  I  M  L  Q  L  P  L  S  *  Y  L  Q  F  L  L  K  Q  :  D  K  D  L  P  *  E  R  V  A  E  R  L  V  L  G  L  F  L  K  Y  *  A  E  G  S  E  N  A  S  F  S  F  S  L  V  L  S  Q  E  E  L  N  K  *  K  F  Y  C  C  L  R  K  Y  K  T  R  D  G  C  *  F  N  H  H  L  T  F  F  Y  I  A  M  P  R  D  V  S  S  *  N  W  I  Y  W  R  K  *  S  T  L  *  H  L  I  V  H  K  Q  S  L  L  *  I  M  N  F  L  V  Y  E  L  W  S  F  F  L  *  H  S  *  E  T  P  W  *  M  L  R  Y  H  M  Y  T  I  N  P  T  I  I  P  S  R  L  L </first_frame>
            <second_frame>  K  N  L  N  P  S  N  T  P  Q  R  H  F  Q  L  R  S  F  F  N  G  V  R  R  F  Q  K  S  Q  F  E  A  R  V  V  T  L  S  S  N  L  L  V  L  *  R  R  I  S  F  H  S  V  F  A  L  R  N  E  K  W  K  *  Y  F  Q  S  F  *  S  M  V  E  I  Y  G  H  L  H  S  N  :  K  T  S  C  K  C  G  N  Y  R  T  R  *  S  W  K  D  Y  S  Y  C  C  N  Y  K   : G  S  S  R  R  R  K  G  Q  G  N  C  I  *  *  N  *  Q  S  P  *  R  E  E  E  R  N  Y  Y  C  Y   : S  P  R  G  V  *  D  S  *  K  T  L  C  S  C  *  L  P  R  T  R  G  L  R  *   : K  Y  D  Y  R  S  C  P  N  G  W  W  Y  S  S  C  I  C  S  R  W  T  Y  A  A  N  K  G  A  Y  S  S  C  P  P   : G  R  C  A  L  S  C  L  L  F  K  Q  S  *  C  C  *  R  S  *  A  A  G  T  C  *  N  G  A  S  R :   T  S  *  F  L  Q  V  S  W  G  *  N  S  Y  H  P  W  F  S  S  F  C  F  T  G  N  *  *  R  N  W  K  E  S  Y  F  K  V  D  G  C  C  R  *  I  H  S  R  S  S  A  S  A  *  *  T  I  L  N  A  S  R  R  C  I  F  N  S   : G  T  W  N  C  C  Y  W  P  Y  *  T  G  N  N  K  S  W  R  G  C  G  D  F  R  A  D  A   : G  N  L  K  I  Y  S  D  W  C  R  N  V  Q  E  D  L  G  *  W  S   : S  W  *  *  C  R  A  S  S  T  W  L  E  T  R  R  Y  Y  T  R  N   : G  N  C  K  A  W  *  C  E  N  V  Q  E  I  *  G  R  N  I  R  T  N  *  G  *  R  W  S  A  H  C  F  F  L  K  L  *  A  S  V  L  H  E  N  C  *  H  Y  R  *  S  G  V  A  *  K  C  Q  D  G  Y  A  R  *  *  C  Y  S  Y  L  *  A  D  I  S  S  S  S  *  N  R :   T  K  I  C  P  E  R  G  W  Q  N  G  W  C  W  G  C  F  *  S  T  E  L  R  V  L  K  M  Q  A  S  V  S  V  W  F  C  L  K  R  S  *  T  N  E  N  S  I  A  A  C  G  N  T  R  H  V  M  V  A  N  L  I  I  I  *  H  F  F  I  L  Q  C  Q  E  M  C  R  R  E  I  G  Y  I  G  E  N  S  P  L  C  S  I  L  *  F  I  S  S  H  Y  F  K  *  *  T  F  W  C  M  N  Y  G  L  F  F  S  S  I  H  E  K  L  H  G  R  C  Y  V  I  I  C  T  Q  *  I  L  P  S  F  R  A  V  C   </second_frame>
            <third_frame>   K  T  *  T  L  Q  I  P  L  N  A  I  S  S  F  V  A  S  S  M  A  S  V  V  F  R  N  P  N  S  K  R  V  L  S  L  S  P  Q  I  Y  S  C  C  R  G  G  S  V  S  T  Q  F  L  L  S  E  T  K  N  G  N  D  T  S  S  L  S  N  P  W  W  R  S  M  A  T  F  T  R  T :   K  P  H  V  N  V  G  T  I  G  H  V  D  H  G  K  T  T  L  T  A  A  I  T  K  :  V  L  A  E  E  G  K  A  K  A  I  A  F  D  E  I  D  K  A  P  E  E  K  K  R  G  I  T  I  A  T  :  A  H  V  E  Y  E  T  A  K  R  H  Y  A  H  V  D  C  P  G  H  A  D  Y  V  K  :  N  M  I  T  G  A  A  Q  M  D  G  G  I  L  V  V  S  A  P  D  G  P  M  P  Q  T  K  E  H  I  L  L  A  R  Q  :  V  G  V  P  S  L  V  C  F  L  N  K  V  D  A  V  D  D  P  E  L  L  E  L  V  E  M  E  L  R   : E  L  L  S  F  Y  K  F  P  G  D  E  I  P  I  I  R  G  S  A  L  S  A  L  Q  G  T  N  E  E  I  G  K  K  A  I  L  K  L  M  D  A  V  D  E  Y  I  P  D  P  V  R  Q  L  D  K  P  F  L  M  P  V  E  D  V  F  S  I  Q  :  G  R  G  T  V  A  T  G  R  I  E  Q  G  T  I  K  V  G  E  D  V  E  I  L  G  L  M  Q  :  G  T  L  K  S  T  V  T  G  V  E  M  F  K  K  I  L  D  N  G  Q  :  A  G  D  N  V  G  L  L  L  R  G  L  K  R  E  D  I  T  R  G  M  :  V  I  A  K  P  G  S  V  K  T  S  K  K  F  E  A  E  I  Y  V  L  T  K  D  E  G  G  R  H  T  A  F  F  S  N  Y  R  P  Q  F  Y  M  R  T  A  D  I  T  G  K  V  E  L  P  E  N  V  K  M  V  M  P  G  D  N  V  T  A  T  F  E  L  I  S  P  V  P  L  E  T   : G  Q  R  F  A  L  R  E  G  G  R  T  V  G  A  G  V  V  S  K  V  L  S  *  G  F  *  K  C  K  L  Q  F  Q  S  G  F  V  S  R  G  A  E  Q  M  K  I  L  L  L  L  A  E  I  Q  D  T  *  W  L  L  I  *  S  S  F  D  I  F  L  Y  C  N  A  K  R  C  V  V  V  K  L  D  I  L  E  K  I  V  H  S  V  A  S  Y  S  S  *  A  V  I  T  L  N  N  E  L  F  G  V  *  T  M  V  F  F  S  L  A  F  M  R  N  S  M  V  D  A  T  L  S  Y  V  H  N  K  S  Y  H  H  S  E  P  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64498" stop="64266"/>
                    <exon start="64116" stop="64041"/>
                    <exon start="63754" stop="63662"/>
                    <exon start="63579" stop="63505"/>
                    <exon start="61998" stop="61894"/>
                    <exon start="61806" stop="61716"/>
                    <exon start="61597" stop="61392"/>
                    <exon start="61095" stop="61012"/>
                    <exon start="60400" stop="60338"/>
                    <exon start="60247" stop="60185"/>
                    <exon start="59838" stop="59598"/>
                    <exon start="58631" stop="58561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLQIPLNAISSFVASSMASVVFRNPNSKRVLSLSPQIYSCCRGGSVSTQFLLSETKNGNDTSSLSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGKKAILKLMDAVDEYIPDPVRQLDKPFLMPVEDVFSIQGRGTVATGRIEQGTIKVGEDVEILGLMQGTLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDITRGMVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTATFELISPVPLETGQRFALREGGRTVGAGVVSKVLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58636" e_stop="58185"/>
            <exon e_start="58008" e_stop="57993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="58636" e_stop="58185" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58184" i_stop="58009" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="0.688">
            <gDNA_exon_boundary e_start="58008" e_stop="57993" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58636" stop="58185"/>
              <exon start="58008" stop="57993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350606" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGGACAAAGATTTGCCCTGAGAGAGGGTGGCAGAACGGTTGGTGCTGGGGTTGTTTCTAAAGTACTGAGCTGAGGGTTCTGAAAATGCAAGCTTCAGTTTCAGTCTGGTTTTGTCTCAAGAGGAGCTGAACAAATGAAAATTCTATTGCTGCTTGCGGAAATACAAGACACGTGATGGTTGCTAATTTAATCATCATTTGACATTTTTTTATATTGCAATGCCAAGAGATGTGTCGTCGTGAAATTGGATATATTGGAGAAAATAGTCCACTCTGTAGCATCTTATAGTTCATAAGCAGTCATTACTTTAAATAATGAACTTTTTGGTGTATGAACTATGGTCTTTTTTTCTCTAGCATTCATGAGAAACTCCATGGTAGATGCTACGTTATCATATGTACACAATAAATCCTACCATCATTCCGAGCCGTTTGCTTGCACTCCCTCAG : ACAAAAGGCAAAATAA</gDNA_template>
            <first_frame> F  R  T  K  I  C  P  E  R  G  W  Q  N  G  W  C  W  G  C  F  *  S  T  E  L  R  V  L  K  M  Q  A  S  V  S  V  W  F  C  L  K  R  S  *  T  N  E  N  S  I  A  A  C  G  N  T  R  H  V  M  V  A  N  L  I  I  I  *  H  F  F  I  L  Q  C  Q  E  M  C  R  R  E  I  G  Y  I  G  E  N  S  P  L  C  S  I  L  *  F  I  S  S  H  Y  F  K  *  *  T  F  W  C  M  N  Y  G  L  F  F  S  S  I  H  E  K  L  H  G  R  C  Y  V  I  I  C  T  Q  *  I  L  P  S  F  R  A  V  C  L  H  S  L  R :   Q  K  A  K  * </first_frame>
            <second_frame>  S  G  Q  R  F  A  L  R  E  G  G  R  T  V  G  A  G  V  V  S  K  V  L  S  *  G  F  *  K  C  K  L  Q  F  Q  S  G  F  V  S  R  G  A  E  Q  M  K  I  L  L  L  L  A  E  I  Q  D  T  *  W  L  L  I  *  S  S  F  D  I  F  L  Y  C  N  A  K  R  C  V  V  V  K  L  D  I  L  E  K  I  V  H  S  V  A  S  Y  S  S  *  A  V  I  T  L  N  N  E  L  F  G  V  *  T  M  V  F  F  S  L  A  F  M  R  N  S  M  V  D  A  T  L  S  Y  V  H  N  K  S  Y  H  H  S  E  P  F  A  C  T  P  S   : D  K  R  Q  N   </second_frame>
            <third_frame>   Q  D  K  D  L  P  *  E  R  V  A  E  R  L  V  L  G  L  F  L  K  Y  *  A  E  G  S  E  N  A  S  F  S  F  S  L  V  L  S  Q  E  E  L  N  K  *  K  F  Y  C  C  L  R  K  Y  K  T  R  D  G  C  *  F  N  H  H  L  T  F  F  Y  I  A  M  P  R  D  V  S  S  *  N  W  I  Y  W  R  K  *  S  T  L  *  H  L  I  V  H  K  Q  S  L  L  *  I  M  N  F  L  V  Y  E  L  W  S  F  F  L  *  H  S  *  E  T  P  W  *  M  L  R  Y  H  M  Y  T  I  N  P  T  I  I  P  S  R  L  L  A  L  P  Q  :  T  K  G  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="83211" PGL_stop="82831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83211" e_stop="82831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="83211" e_stop="82831" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83211" stop="82831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83205" stop="82831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTACTAGCTATTGCAGCAGAAAAAGGTTGGAGAGTTTAACAACTTGATGTTAAGTCGGCCTTTATCAATGGTCTTCTCCAAGAGGAGATTTATGTTGAGCAACCAGATGGCTTTGTTGCCAAGGGGCAAGAAAATAACAAGATTGACAATCATTTGCTCAGTTTAGGTTTCAAGAAGAGCCTATCTGAGTCTACACTTTATATTAAGTGTTCAGGTGCAGAGATACTTATTATTTCTTTGTATTTTAACGATCTGTTTGGCACAGGAAGTAAGGTTTGCCTAATTGAAGACTTCAAGTTGGAAACGAGGAAGGTCTTTGAAATAACAAACATTGGACTAACGGCGCACTTTCTTGGAGTGGAAATAAAAAAAAATGAAG</gDNA_template>
            <first_frame> C  Y  *  L  L  Q  Q  K  K  V  G  E  F  N  N  L  M  L  S  R  P  L  S  M  V  F  S  K  R  R  F  M  L  S  N  Q  M  A  L  L  P  R  G  K  K  I  T  R  L  T  I  I  C  S  V  *  V  S  R  R  A  Y  L  S  L  H  F  I  L  S  V  Q  V  Q  R  Y  L  L  F  L  C  I  L  T  I  C  L  A  Q  E  V  R  F  A  *  L  K  T  S  S  W  K  R  G  R  S  L  K  *  Q  T  L  D  *  R  R  T  F  L  E  W  K  *  K  K  M  K </first_frame>
            <second_frame>  A  T  S  Y  C  S  R  K  R  L  E  S  L  T  T  *  C  *  V  G  L  Y  Q  W  S  S  P  R  G  D  L  C  *  A  T  R  W  L  C  C  Q  G  A  R  K  *  Q  D  *  Q  S  F  A  Q  F  R  F  Q  E  E  P  I  *  V  Y  T  L  Y  *  V  F  R  C  R  D  T  Y  Y  F  F  V  F  *  R  S  V  W  H  R  K  *  G  L  P  N  *  R  L  Q  V  G  N  E  E  G  L  *  N  N  K  H  W  T  N  G  A  L  S  W  S  G  N  K  K  K  *   </second_frame>
            <third_frame>   L  L  A  I  A  A  E  K  G  W  R  V  *  Q  L  D  V  K  S  A  F  I  N  G  L  L  Q  E  E  I  Y  V  E  Q  P  D  G  F  V  A  K  G  Q  E  N  N  K  I  D  N  H  L  L  S  L  G  F  K  K  S  L  S  E  S  T  L  Y  I  K  C  S  G  A  E  I  L  I  I  S  L  Y  F  N  D  L  F  G  T  G  S  K  V  C  L  I  E  D  F  K  L  E  T  R  K  V  F  E  I  T  N  I  G  L  T  A  H  F  L  G  V  E  I  K  K  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83170" stop="82832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLDVKSAFINGLLQEEIYVEQPDGFVAKGQENNKIDNHLLSLGFKKSLSESTLYIKCSGAEILIISLYFNDLFGTGSKVCLIEDFKLETRKVFEITNIGLTAHFLGVEIKKNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="104956" PGL_stop="104563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104956" e_stop="104563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="104956" e_stop="104563" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104956" stop="104729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104946" stop="104563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104891" stop="104564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATAACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGTTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGAGGATTAAATTTCTGAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAATTTT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  N  *  K  F  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  R  L  V  V  V  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  E  D  *  I  S  E  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  F  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  R  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  F </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  *  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  A  T  C  C  C  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  *  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="113177" PGL_stop="113521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113177" e_stop="113521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="113177" e_stop="113521" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113177" stop="113521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCACCCCTAACCGAACCTCCACAACTCCAACCTGCATAAACATCAGCCCAACCTAACAGCTCACAGTTTACATAGAACGTAACTCAACAAAAACATTTAGACAAATACTCCACAACAACACTTTAACAAATTACATATCCTCCACAACAACACTTTAACAAATTATATATCCTCAACATCAACACTTAAACAAATTAGATATCCTCAATAGCAACACTTCCAAAAATTTACATATCCTCAATAACACACTTCAACAAATTACATATCCTCAACAACAACACTTCAACAAATTATATATCCTCAATAACAAGCTCAGTATTCAACAATCACAAGTTCCGCAAAA</gDNA_template>
            <first_frame> Y  H  P  *  P  N  L  H  N  S  N  L  H  K  H  Q  P  N  L  T  A  H  S  L  H  R  T  *  L  N  K  N  I  *  T  N  T  P  Q  Q  H  F  N  K  L  H  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  S  T  L  K  Q  I  R  Y  P  Q  *  Q  H  F  Q  K  F  T  Y  P  Q  *  H  T  S  T  N  Y  I  S  S  T  T  T  L  Q  Q  I  I  Y  P  Q  *  Q  A  Q  Y  S  T  I  T  S  S  A  K </first_frame>
            <second_frame>  T  T  P  N  R  T  S  T  T  P  T  C  I  N  I  S  P  T  *  Q  L  T  V  Y  I  E  R  N  S  T  K  T  F  R  Q  I  L  H  N  N  T  L  T  N  Y  I  S  S  T  T  T  L  *  Q  I  I  Y  P  Q  H  Q  H  L  N  K  L  D  I  L  N  S  N  T  S  K  N  L  H  I  L  N  N  T  L  Q  Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  Y  I  L  N  N  K  L  S  I  Q  Q  S  Q  V  P  Q   </second_frame>
            <third_frame>   P  P  L  T  E  P  P  Q  L  Q  P  A  *  T  S  A  Q  P  N  S  S  Q  F  T  *  N  V  T  Q  Q  K  H  L  D  K  Y  S  T  T  T  L  *  Q  I  T  Y  P  P  Q  Q  H  F  N  K  L  Y  I  L  N  I  N  T  *  T  N  *  I  S  S  I  A  T  L  P  K  I  Y  I  S  S  I  T  H  F  N  K  L  H  I  L  N  N  N  T  S  T  N  Y  I  S  S  I  T  S  S  V  F  N  N  H  K  F  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0004H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="114147" PGL_stop="113460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114147" e_stop="113460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="114147" e_stop="113460" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114147" stop="113460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTGATATATGTTTGGGAGTAACGGGATTGGTGATGGGTTGATTTGTCCACATTGATTAATTCTAATGATGAAATAAAAGGGATAACTAAAGGCGATGTGATTAATTATTTATGTGTGATGTGTTGAGAAAAGTTTGATGGCTTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATGGTCATCTTCTCATTATTTGTGTGAACATGTCATTGCATTATTCTGAGATATGATTGTGGAAGTGTTATGTGCATTGAGAAAGAATGATAACTTAAAGAGGATGTACCATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTATATTTCGAGGGACGTATCGCGCGCCGTGATGGATACTATATTTCGAGGGACGTATCGCGCGCCGCGATGGTTATTATTATCGAGGGTCGTGTCGTGCGCCGCGACAGATGCATGGACAGATATGTCCCCCATGGGTCCCGGACTGAGAGACAGCGGGTGTGTATCACTAGGTCAGACATGCATCATTATACTTGACATTGCATTCCATTACATTGCACATACTTATCATTAGTGAACTTGATATTGTGTTTTGCTGATCTAGTGATTGACTTTTTGCGGAACTTGTGATTGTTGAATACTGAGCTTGTTATTGAGGATATATAATTTGTTGAA</gDNA_template>
            <first_frame> L  V  I  Y  V  W  E  *  R  D  W  *  W  V  D  L  S  T  L  I  N  S  N  D  E  I  K  G  I  T  K  G  D  V  I  N  Y  L  C  V  M  C  *  E  K  F  D  G  L  L  N  H  C  *  C  D  F  M  F  V  W  L  *  T  V  Q  C  Y  E  N  G  H  L  L  I  I  C  V  N  M  S  L  H  Y  S  E  I  *  L  W  K  C  Y  V  H  *  E  R  M  I  T  *  R  G  C  T  I  S  R  D  V  S  R  A  A  M  V  T  I  F  R  G  T  Y  R  A  P  *  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  Y  R  G  S  C  R  A  P  R  Q  M  H  G  Q  I  C  P  P  W  V  P  D  *  E  T  A  G  V  Y  H  *  V  R  H  A  S  L  Y  L  T  L  H  S  I  T  L  H  I  L  I  I  S  E  L  D  I  V  F  C  *  S  S  D  *  L  F  A  E  L  V  I  V  E  Y  *  A  C  Y  *  G  Y  I  I  C  *  </first_frame>
            <second_frame>  L  *  Y  M  F  G  S  N  G  I  G  D  G  L  I  C  P  H  *  L  I  L  M  M  K  *  K  G  *  L  K  A  M  *  L  I  I  Y  V  *  C  V  E  K  S  L  M  A  C  *  I  I  V  D  V  I  S  C  L  C  G  C  E  L  C  N  V  M  K  M  V  I  F  S  L  F  V  *  T  C  H  C  I  I  L  R  Y  D  C  G  S  V  M  C  I  E  K  E  *  *  L  K  E  D  V  P  F  R  G  T  Y  R  A  P  R  W  L  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  M  V  I  I  I  E  G  R  V  V  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  E  R  Q  R  V  C  I  T  R  S  D  M  H  H  Y  T  *  H  C  I  P  L  H  C  T  Y  L  S  L  V  N  L  I  L  C  F  A  D  L  V  I  D  F  L  R  N  L  *  L  L  N  T  E  L  V  I  E  D  I  *  F  V  E </second_frame>
            <third_frame>   C  D  I  C  L  G  V  T  G  L  V  M  G  *  F  V  H  I  D  *  F  *  *  *  N  K  R  D  N  *  R  R  C  D  *  L  F  M  C  D  V  L  R  K  V  *  W  L  V  E  S  L  L  M  *  F  H  V  C  V  V  V  N  C  A  M  L  *  K  W  S  S  S  H  Y  L  C  E  H  V  I  A  L  F  *  D  M  I  V  E  V  L  C  A  L  R  K  N  D  N  L  K  R  M  Y  H  F  E  G  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  V  M  D  T  I  F  R  G  T  Y  R  A  P  R  W  L  L  L  S  R  V  V  S  C  A  A  T  D  A  W  T  D  M  S  P  M  G  P  G  L  R  D  S  G  C  V  S  L  G  Q  T  C  I  I  I  L  D  I  A  F  H  Y  I  A  H  T  Y  H  *  *  T  *  Y  C  V  L  L  I  *  *  L  T  F  C  G  T  C  D  C  *  I  L  S  L  L  L  R  I  Y  N  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113890" stop="113561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMIVEVLCALRKNDNLKRMYHFEGRIARRDGYYISRDVSRAVMDTIFRGTYRAPRWLLLSRVVSCAATDAWTDMSPMGPGLRDSGCVSLGQTCIIILDIAFHYIAHTYH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0004H04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113846" stop="113598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKEDVPFRGTYRAPRWLLYFEGRIARRDGYYISRDVSRAAMVIIIEGRVVRRDRCMDRYVPHGSRTERQRVCITRSDMHHYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 257 chains have been computed
$ 
$ memory statistics:
$ 361208 bytes spliced alignments in total
$ 123 spliced alignments have been stored
$ 2936 bytes was the average size of a spliced alignment
$ 20488 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1707 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 301 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 11:35:59
-->
