<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:44:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323361" ref_strand="+" ref_description="SGN-U323361        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT2G47110.1 | Symbol: None | ubiquitin extension protein 6 (UBQ6) / 40S ribosomal protein S27A (RPS27aB), identical to GI:166936 | chr2:19351738-19352366 FORWARD | Aliases: F14M4.6 (evalue: 2e-22, score=102) genbank/nr: gi|27734377|gb|AAM51217.1| polyubiquitin [Cercomonas ATCC50316](evalue: 7e-21, score=103)">
      <seq>cacattatatttttctggttctttgccttttaatttagtctctgcgcctctttggatttatcgaaggtactctcacttttctttttgagcttccaatgtaaattagtattcttgatgtttcattataacttgtaacacatatagtaattatacttggttcgatgaaattgtttgatcttaaatttatgcaacaaatatcgctcgtaagtctacttggatcttgatgagtaagaacaaatgttttggttttgtaatggatatttgtatattggtcaaatttttcttacattgaactattcctaccaggagaatggctattagcttagtggtagagcggaggatccttgattattatgttgaatgtgaggtgtttcattgttcttttatttaggtacaaatataaaggatgcagatatttgtcaaatcactcacaggccagaccatgacactagatgtggaaacctctgacaccattgatagtgtgaaagacaaaatctatgaaaaaacagggataaaagcagaacatcagaggttaatatttggtggcaagcaactggaaaatggtactgtgaaagattatgacatcaaaagagagtccactcttcatcttgttcttcgcttgcttggtgcagctacatcttgaattttcttacactatgatttttgtactttatgtttaaagcttttaagtcaactcagaaatgagcagatgaataagttacttggatgtatatatgcttcatcattgtgtttactactacttgtcttcaaacaagagatatgcttcaggataatttaatgctatatagtatttttcttttaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="7829" stop="4918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7529" g_stop="6707" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="824" polyA_stop="840"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U323361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7529" e_stop="6707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAA</genome_strand>
        <mrna_strand>CACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314449" ref_strand="+" ref_description="SGN-U314449        Tomato 200607 #1 [25 ESTs aligned]">
      <seq>atctttctttgtgtctaagcaaaagcaccaacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatgtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctatttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16530" stop="4924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16230" g_stop="16096" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="15814" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="313" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14896" g_stop="14625" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="585" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14624" i_stop="14172" i_length="453">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14171" g_stop="14139" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="618" r_length="33" r_score="0.576"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U314449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16230" e_stop="16096"/>
          <exon e_start="15991" e_stop="15814"/>
          <exon e_start="14896" e_stop="14625"/>
          <exon e_start="14171" e_stop="14139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTTGTGTCTAAGCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAAATCTTGGTTGTCTATATGTGAATGCGACCTTGCTCTTAGGTTATATATGCTGCTGATTTCTATTTACTGTGTGGGCGATCACCATTTTTTGGGTTTAAAGTTTATTATACTGACTTGTTAGACGCCCAAAGTATAACCAATTGAGTGGTGAAATACTTCAACAAGTTGGCAAGTTGTAAAATCTTCTGGGTGTTAGTATATCCTACAACAGGCTTGTGGGGTGCCTAGTATGTTTCTTAATTTAGACCATAATGAAAGTCCGCCAAAACCTTTAATCCTTCATCTTATGCTTTGTTGGTGGGCAGGTGACATATATTTTGTAGAACACAACCAGACTTGGACTCAGCCGTTGGTTCTTGATCCTTGTGCTTATGCAAACCGAATAGGTAATAGAAATAGGTTCTTTTGTGCCATAGATTCATATATAAAGGACTTTACTAAAAACAATCAAAGGTTATAAAATATAACGACAAGCAAAACTCAAAA</genome_strand>
        <mrna_strand>ATCTTTCTTTGTGTCTAAGCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314453" ref_strand="+" ref_description="SGN-U314453        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>aacagaaactctctctacagttagatccaacccaaattcttcattaattcaacaatgagttactacaatcaacaacaaccccctgttggtgtgccaccaccacaaggatatccgccagaaggttacccaaaagatgcatacccaccaccagggtacccacagcagggttaccctcaacaaggttacccacctcaagggtaccctccacagtatgcacctcagtatggtgctccacctcctcatcaacaacaacagcaatctggtactggtttcatggaaggatggtatgaaccttaaagactcaatttttatgttcatatgttatgattcagttacagtaatttgtatgattttgtttgagagagatctgtattgatattggttttttgtagagcggttgaggagattgtttatctgtcttgtctgttactatgtgtgtgtttcttgttgatttggtgtgtcttgtcaaaacatgatttctcgaattattattggtctgtttgatgtttactttgtgagcacttgtatttaataactatggttctggacgagttctggacgcgaactagaaggggtccttatcatttgtatgtctagttgaacattaacgcgagcaggagagacaattagaatgcctgaatgattctctatgtgcaaacatagtccaggccttgccacacctttgattttatctctgactgctgaaatcgcgcccctatcatacttcagactggaagggggtgcatggactagacataacttgtgttgctttgtctatagctataggttttccactgttgctgctgcaataagacaataatgacctcttatcaaagaaatctacactgtcacgttaattgtttcttcgttgtaatagactatgggagtatccttgttgatgctccattccactgtaagataagtagttaactgatctttcaaaacaatcacataattgtcatattaatcacacgtttaagttatcgcagtgccagtgaaccaattagacaatggacgtggtcttggctaccctaaattttcatagaatatagtggtggtctttcacatttcaacagctttgtgattttctgttttaggcgttccttctttcttgtagcctctcctcattttatttgagcttgctgtatttgttatttccggtgggggactaatcattggttgttatatttttgttttgcagtttggctgctctgtgctgttgctgtctcttggatgcatgcttttgatgctgtaaatgatctgtgccatgtgttggtggcaaaagtttattaaaccaattctatcatagtctagactttctctttttgtgtttgtctttggtgtcctgtactgtccttgataaataatttgatattaaatatgacgatgcaccttgttatggtgggagaattcaagtgtctatttgccaatttatacattattgtgcaatgcaagagattctattttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="16501" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16201" g_stop="16096" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="14625" g_length="1367"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="1473" r_length="1367" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U314453" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1473</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16201" e_stop="16096"/>
          <exon e_start="15991" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAGGTAAATCACTTCAATTCCTTTTTTTCTGATTTTATTTTGGTAAAGTTGATGTTTTTATATGTTTTTTTGATGACTAGATCTGATGGGGTTTTGAATTTTTGTAGGATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</genome_strand>
        <mrna_strand>AACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG........................................................................................................GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329873" ref_strand="+" ref_description="SGN-U329873        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains 3 (2 significant) WD-40 repeats (PF0400); similar to beta transducin-like protein HET-E2C*40 (GI:17225208) (Podospora anserina) | chr5:22759258-22762403 FORWARD | Aliases: None(evalue: 3e-62, score=234) genbank/nr: WD-40(evalue: 7e-63, score=242)">
      <seq>agatggtttacttgttgattcccgcaatggaaagacggtggcttcaatcgttggtcatttagactactcttttgcttgtgcgtggcatccagatgggcgtacatttgccactgggaatcaagataagacatgtcgaatttgggacttgagaaacttatcctcgtctacagccattctgaagggaaacatcggtgctgctcgatctatccgtttctcatccgatggacagttccttgttgtggctgaacctgcagattttgtccatatctacaataccaagtcagactacaagaaacgtcaggaaattgatctttttggtgagatatcaggggtatctctgagcccagacgacgaatctctttacattggtatctgggatcgaacatatggaagcttgctagaatacaacagaaggcatagttgtagatatcttgattcgttcgtgtaatcttcaacccaagggttctacagttcattcacattgagtcccaatattttgcacaaattcgtccccgattattttatatcagttcttgatcttggcattactatgtacagttacaccttgagattgaactttgtttctggttatatacaatctctctcatgtaccattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="22076" stop="20496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21776" g_stop="21743" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21742" i_stop="21382" i_length="361">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.121" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21381" g_stop="20796" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="620" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U329873" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21776" e_stop="21743"/>
          <exon e_start="21381" e_stop="20796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAGGTATTATAATTTTTTTACCATTACCTTCTTTAGTCCGTTGTTTCACTCTGATAGTAGTATTGATCATTAAATTCAGAGGGAAATGAATACATTTAGCTCAGTTATTCTGAATCTACAGCAAAATCGGATTACGTTCAACTTTTTGATTATGTAACTACGGCCTGTCAGTTTTTTAAGTCTGAATCATGTTAGGTCAATATAGTTACTATATTTGTGGTGAGGCCATTATTTGGCAAAATTATTCCCAAGTTCATTTTCTTTTTCCTTCAAAGACGTCTCTCCATATTTTGGCTTTCGTATGAGTTTCCCATTTGCTGAACTTGCAAAATCTTATCTAAGGCAGCTTGTTTACTGTTAACAGACGGTAGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAGTTACACCTTGAGATTGAACTTTGTTTCTGGTTATATACAATCTCTCTCATGTACCATTTTGC</genome_strand>
        <mrna_strand>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACGGTGGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAGTTACACCTTGAGATTGAACTTTGTTTCTGGTTATATACAATCTCTCTCATGTACCATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329446" ref_strand="+" ref_description="SGN-U329446        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttcagtttaactttctgcatactgttcactaagctctcaaaccatcttgaattcctctctttccaaatagcccaccatataacacttctttgctttttttgatttcctatcattagttactgagtagttttggttgtccgtgaagtataatatacttgctttttcatacaagagaactggcaggttgtggagaagttccaaactggtcattgtcattattctcctcctcatcatcaacattctcatgtattgggtgttagtgggatagaatggtttcatgaatttctagtgtaagttctttctttaatcaaatgaaattctaatatgaggctttagatggactgtagttttctgatttaaattgaggctggaagtggttatttaataattctttcttgtacgaccttgtattatgacatcccaacaaggggcttttagtatctgagtgacctcaatgggttttatacattcaggttgagtttggtggtagattagataggctagatgaaggccaagcgtttgaagataaatcccatcattctcatttgtttcatcttagaggaccaatttatggggggttgaatatttgagatttggcagtgccatagagatttgcaatgagtacaattgctgtggctgatggtgcaacttcttatatagtagattgccaacatgattgccttttttgctctgacattctggaatacccctgagatactcttttatgctcaatttcatgttcatattcttaacttgtatgctgctcatggttgtatttgttgatctactatttaacttcggaacttgtttctagcgagcaattattttgtcgtgcttcaatgggttattgaagttttttcatttgcttgaagtcagtcatcatcaacgcacatagtggtatgttgttgttgtagtagtttttgtacttcatataagtagttacaacacttttggatctatatttcctcttatttgaagttgagatcaatcatcaacgagctgcctctctctggacttcatttctcttttaagatttataagccaacatcatatgttgattcaatcaaccaggtattcatatcataaatagaaagcttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="23700" stop="21993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23400" g_stop="22293" g_length="1108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1108" r_length="1108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U329446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1108</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23400" e_stop="22293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTTAACTTTCTGCATACTGTTCACTAAGCTCTCAAACCATCTTGAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTCTTTGCTTTTTTTGATTTCCTATCATTAGTTACTGAGTAGTTTTGGTTGTCCGTGAAGTATAATATACTTGCTTTTTCATACAAGAGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTCATTGTCATTATTCTCCTCCTCATCATCAACATTCTCATGTATTGGGTGTTAGTGGGATAGAATGGTTTCATGAATTTCTAGTGTAAGTTCTTTCTTTAATCAAATGAAATTCTAATATGAGGCTTTAGATGGACTGTAGTTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTTCTTGTACGACCTTGTATTATGACATCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTTATACATTCAGGTTGAGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGTTTGAAGATAAATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGTTGTTGTTGTAGTAGTTTTTGTACTTCATATAAGTAGTTACAACACTTTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCTCTGGACTTCATTTCTCTTTTAAGATTTATAAGCCAACATCATATGTTGATTCAATCAACCAGGTATTCATATCATAAATAGAAAGCTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>TTCAGTTTAACTTTCTGCATACTGTTCACTAAGCTCTCAAACCATCTTGAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTCTTTGCTTTTTTTGATTTCCTATCATTAGTTACTGAGTAGTTTTGGTTGTCCGTGAAGTATAATATACTTGCTTTTTCATACAAGAGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTCATTGTCATTATTCTCCTCCTCATCATCAACATTCTCATGTATTGGGTGTTAGTGGGATAGAATGGTTTCATGAATTTCTAGTGTAAGTTCTTTCTTTAATCAAATGAAATTCTAATATGAGGCTTTAGATGGACTGTAGTTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTTCTTGTACGACCTTGTATTATGACATCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTTATACATTCAGGTTGAGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGTTTGAAGATAAATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGTTGTTGTTGTAGTAGTTTTTGTACTTCATATAAGTAGTTACAACACTTTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCTCTGGACTTCATTTCTCTTTTAAGATTTATAAGCCAACATCATATGTTGATTCAATCAACCAGGTATTCATATCATAAATAGAAAGCTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315020" ref_strand="+" ref_description="SGN-U315020        Tomato 200607 #1 [49 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein S8e family protein, contains Pfam profile PF01201: Ribosomal protein S8e | chr5:1944772-1946725 FORWARD | Aliases: MHF15.12, MHF15_12(evalue: 9e-135, score=476) genbank/nr: gi|15240023|ref|NP_196254.1| expressed protein [Arabidopsis thaliana] gi|9758416|dbj|BAB08958.1| gene_id:MHF15.12~ref|NP_055701.1~similar to unknown protein [Arabidopsis thaliana] gi|16604561|gb|AAL24082.1| unknown protein [Arabidopsis thaliana] gi|21280889|gb|AAM45100.1| unknown protein [Arabidopsis thaliana](evalue: 7e-133, score=476)">
      <seq>catgaatcttatgtttttccaagtttttacgattatcttaagcattattatatactgatgatttttaaatgtttttctttgtgatgtgaaaatctggccaaccgtagccatgcctcagggagattacatagagttgcacaggaagagatttgggcgtcgccctgatcactttgagcgtaaacgtaagaaggatgctcgtgaagttcacaagcgatcccaaattgcccaaaaggctttgggtatcaagggtaagatgtttgctaagaagcgttatgctgagaaggcccaaatgaagaaaacattggctatgcatgaagagtcatcatcccggcgcaaggttgatgatgatgtgcatgagggtgctgtccctgcatatctgatggatcgtgagactaccacaagagctaagattcttagcaacacaataaagcaaaagaggaaagagaaagctggaaaatgggaggtgcctctgcccaaggttaggcctgtggctgaggatgagatgttcagagtgataagatctggcaaaaggaagaccaagcagtggaagagaatggttacgaaagccacctttgtcggagcagggtttaccaggaaacctccaaagtatgagcggttcatccgcccgtctggattacggtttactaaagcccacgtgacacatcctgaacttaaatgtacgttcaatcttgagatcattggggtgaagaagaatcctaatggtccaatgtacacttctctaggtgttataaccaagggaaccatcattgaggttaatgtcagcgaacttggtcttgtcactcctgctgggaaagttgtatggggtaaatatgctcaagtgacgaataatcctgaaaatgatggttgcatcaatgcagttctcctagtgtagtactttttaacagagaagaaactgtaccctttttgtttgtgaatcgagtgcataattttgtgtatcgcttcggtacactgcttgatgctggttgtgacagagttgtagaataggagaggcgaaatgaagtagtgatttgttggaacttgcaactgtaccgatgatattagtcttgttatgctgttggcttccatgtttattgaattccttgaggtggaacgtagcaagtagattcatttaccaggaaaaattaagttattcatcagaaaaaaaaaaaaaaacctttttattgctataatcattaaatccttaagctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="27074" stop="31594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27374" g_stop="27599" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27716" g_stop="27783" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="300" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29478" g_stop="29586" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="409" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29694" g_stop="29762" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="478" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30219" g_stop="30276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="536" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30439" g_stop="30674" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="772" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30757" g_stop="30808" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="824" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30904" g_stop="31286" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="1209" r_length="385" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1210" polyA_stop="1259"/>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U315020" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1201</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27374" e_stop="27599"/>
          <exon e_start="27716" e_stop="27783"/>
          <exon e_start="29478" e_stop="29586"/>
          <exon e_start="29694" e_stop="29762"/>
          <exon e_start="30219" e_stop="30276"/>
          <exon e_start="30439" e_stop="30674"/>
          <exon e_start="30757" e_stop="30808"/>
          <exon e_start="30904" e_stop="31286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAAT-TGG-CAAAC--A-ACA-GCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAGGTCCCTTTTTGTTCGAAATTACTCTTAACATCTTTTCATTTTTCTGTTTTAATATTCTTATATGCTGTATTACATGAAATTTGAGCTAAAGTTATGTTCTTTTATGCTCAAAATAGGCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAACGTGAGTTTTTAATTGTGTAATTACTATTTTAGGCATGTTGGTTTGGATCTTTTACGAAGTTGTTCACTTTGATTTTAGTATGTTTGTGATCTTGTTGTCAAATGATAGTTGTGATTAGCACAGTCTAAATGTAGCTGAATGAATATTGTGTCATTTATAGTGCTGGCCTAGTCTAGTCAGGGTTGGGGGTTTGTTTTGTTTTATATACATACTTGTCTGATATATTAAATTGATTATCGAATATATAGGAACACTGAATTTTTAAAGAGTATGCTCATGCTACTCCATTAAGTTATTTGACTATTCCATAATTTTCTATTTGAATAATCAGAATTAGTTTCGAAGCCCAAATTGAATAGGAAGCATTGTCCATTATTGGTGACATAGTTCCTCTTTTGTAATATTTCTGAGATTTTGATATGGTAGTGAGAATAATTAATGCTCCTAGGATTGGTTGTTATTCCGAATTTCAGATTTGGCTGCTTGTTGGGTACTGAAAATATTGGGGCTTACTGAATTTTTCTATGTCATTGGTTTTAGTATTTGCTTTTGAGTTGGAAACAGAACCAACTCTTCTTTACGTTGCCAGCTTACTTGGTGTTTGTTTGGATCAGTAAAAAAGGTTTCCCACATCAGAATCTCGCGTTGTCGATTCAATTTAGAGAGTGATGCTCAGTCCATAGCTATTTGCAGTTGCTATTCTCTATACACATACTCTTGGTTTGAAACTTCAGATTTTATCTATATTGAAGTAGGGTGTATGTGGGTGTGGAGTGTGACTAGAGGTATAAGATATATATTGGTTGAACTGTAACTCAGGAGCAAGCAATTGCGTTTCTATTGACCTGTGTGAAAAAGGTTACTGAAGGATAGTCCGAAGGATCTACACATATTCATTATTTTCTAAGCTCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTACTTTCTCAAAAAAAGATCAAGTGGATTCTGCTAATTTGTTGTGGATTTGCTTTAGTAAATCACACAACTGAGCAAATTTTTTTATACCTTGAGGTCTCAACCTACATGCTCTTTAGCATGGGATTTTGAGTCTCGCTTTTCTTTGGAATCATGGTCTGATGGGTGATGAAGTAAATCATTGGTTCACATCCAGCTATACATTGGCTGAAGTACAATTCATACCACTTATAGATAGTTTTAGACAAGTTGAATCCCTTTACTACTACTAATTGTTCCACTTAAAGGTTAGTTAAATGTTAGACATAGTTTTTCTAGCATTTTGCAGTTGTCGATTGAGATAGTTTGACTTCTATCTTCTAATGAGGTTAGCTTTGATGTCAGTTAGATTCTGGTAGGTGTAATTGTTAGACAATTAATTCAGATAACTGTATGCTCTATATTGATTTACGTCGTATAGTAAAAAAAGAAGATAAGAATTAGGAAGTTTCAGCCTTTTACGGCAAAGTTACATCTCCATCCGACTATTGTTGTTGGAATGTATGGCTGATGCTATATATGGCGGGTTAGATTTTCTGAACTACTAATAGAATACTTGGTGCATTTATTTGGTCCTTATGGATGAGGCATGTGATAAACTGATGATTCTTTAGTCACCAAAGACTTTAACCGTTCCTAAATGATTTCTTTTTGAAATTTCTGATATTCTAGCCAATTCACATTTACTTTGTTTGCCTTGAATAGATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAGGCATGTTGAGTTTGATGCAGTGTTGAACTTGTCGTTAGTTGTTCAATTGGTGGTACAATGACCATAGACTGATTATCCTGTTTTTAAATTTCAAACCTTTTATGTAGATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAGGTAAATTCAGAATATCCTTCATTAGTAAATTTTTTACCTTATCCAAAATAAAGAAGGTAAAGTTTGAATAACATGGTAGTTTTTGTCCTTGCACCATGTGTTTCAATACTATCTCTTCCTGCCTGTATGCTGGTTCTTCACTCATGTCCGGTGTGCACATAATTTTTGCTAAATATGTTTGTGTGATTGAAGGGTCACTCCCGTGTCTCTCTGTTTGACTGGTTACAAATAAGGATACTTCACACTTCAGTTTGTGCTCTTGAAAAAAGAACTCGTGGATCTAGGGACGATTCTTATTTGTTGGTCTTAGATAGGTACAGAGATTTCTCTGTAAATATATGACCCACAAAGGGTTGCCATCCAATATCATATGAGCATCACTGTTCCTTTTGTTTAAATGTTTATGATATTTTCGTTTACAGAAATTGCTTTCTAACAAAGATACTTCACCTACAGGTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGAGTAAGTATCTTCAGTTACCTAATTTCGTTTTCTGTTGGTTAGCCTACATCTACAAGTTCTTAATTTCAGCTGCTTATGCTTGTCCTTTGTTGTATTATTTGTTGCCTTTGGGATCGTTAAGAGTGATTTCTTTGACCATTTTGATTCGTCTCATCTTTGCAGCCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAGGTAATCTTTCTGTTTCAATAGTGCATTTTGAAGTTTATCTAATTTAGCTCGCATTCACTAATCATCTTGCTATAAAATCCAGGTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGGGTAAGATATGCTTTACCTTAGATGTTACACTTCGGGGATTCTTTTGTCCTTCGAATTCTGATCATTCATTTTTTTTGTGGATGGTTGAATGCCAGGTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAG--AAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTG</genome_strand>
        <mrna_strand>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATCTGGCCAACCGTAGCCATGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG....................................................................................................................GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG...........................................................................................................ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA..................................................................................................................................................................CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG..................................................................................GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG...............................................................................................GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAAAAAAAAAAAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330827" ref_strand="+" ref_description="SGN-U330827        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, contains Pfam profile PF01764: Lipase | chr1:1733038-1737484 FORWARD | Aliases: T20M3.5, T20M3_5(evalue: 2e-58, score=223) genbank/nr: gi|30679448|ref|NP_172070.2| lipase (class 3) family [Arabidopsis thaliana](evalue: 2e-56, score=223)">
      <seq>gagnaggatgngaccctttgggatatggtgtgcgaatagtagggcattcccttggaggagcgattgctgcagtattgggaatgaagctacgcaaacggtacccagatttacatgtatacacatatggtgctctcccatgtgtgggtctggtggtagcagatgcttgttctgaattcattaccagcattgtaaacaatgatgaattttcagcgcgcctttcagtagcatcaattatgagacttcaagcagctgcacttaaggcattgtcagaagatggcactattgatattacaacaattcttaaacttgctcagcactttacttcattgaccgtctgtcagaaaagcatgaacgacggagaatcgtcagtgaattctttgacagcaatgtcaagttgtacaaaccaaatcaaccatggccaacttgaaaatggattggcaaagcgtgaagcaggatcctctgttttgcatgacatagataccgattttaggtgtgctgatgaaatcgtttcaactgaatcatcaaatcatttcagcagtcctttcaattgctccacttctgattcaagtccatttagtgatcctttaaccgaatttatggaggctgttccatcttctgaaaataaatcatcattgagtattccagagttgtatttacctggtcttgttattcatattgtgccacagaaggatggtcttcataaaccattgtggaagctctggaaaagttgggagagaagatgcaggttcagggcgtatgtagcgaaaagagaagcattcaaagatataatagtatcaccatacatgttcctggaccatctaccttggagatgtcagactgcacttgaaaacatactcaagactggacaacttaaaactccagatgatgcatctgaaattgtgtgattcctacacaagcagtgggctttaggcaccaaaaattcagttaccaaaacatgacatatacgtacataaaagagacaaccacatctgatcaaggccatgtaagatgttattaattatgagagtacaagaaacaaaataccccaagtagagtgttaaaaaagttatgtatttattgttactattgattaaaattttcttaatagtttgttgctcatctcttactaattattatgcacatactttatcagtgatgtatgccctctgttagttttaatattattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="51393" stop="48686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51112" g_stop="51027" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51026" i_stop="50394" i_length="633">
            <donor d_prob="0.897" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50393" g_stop="50296" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="184" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50295" i_stop="50204" i_length="92">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50203" g_stop="49956" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="432" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49955" i_stop="49820" i_length="136">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49819" g_stop="49423" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="829" r_length="397" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49422" i_stop="49346" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49345" g_stop="48985" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="1190" r_length="361" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48984" i_stop="48912" i_length="73">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.398" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48911" g_stop="48905" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1191" r_stop="1197" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U330827" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51112" e_stop="51027"/>
          <exon e_start="50393" e_stop="50296"/>
          <exon e_start="50203" e_stop="49956"/>
          <exon e_start="49819" e_stop="49423"/>
          <exon e_start="49345" e_stop="48985"/>
          <exon e_start="48911" e_stop="48905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGGATGTGAGTGTGAGGGATATGGTGTGCGAATAGTAGGACATTCCCTTGGAGGAGCGATTGCTGCAGTATTGGGAATGAAGGTAGTCATTTTTCTGATGAATTGCATTCCTGGAACTTTTCTTCATCATGTGTGGGCACTCTTTGTACAGGATGCATTGCCGTACCACCACCCCCACCACCACCCGCCCACGCACACACAGCCAAAAAAACACTTTTTCTTCATTAAACATCTGGATGATTGAATGAAATTCACTCATTTGTTTATCTGATCACATTATTACATTGGTAAAGAAGTCAATGTATTGAATCATACCCCACAGATAGCTGATGAAATCTATTGATAGCATATTTTTTAGAGCTGATTACTATCCATTAAAATATCAGATCAATAGAAAAGGCCATTGTGTTAATAGAAAATACAGTTCCTTTAATTGGTAAGTCAATTGGTGATTAATGCACCCTGATTTTATGAATAGACTAATTGTGTTAAAAACAATGGCAGATTAGTTCAAGCATAGAACCAGAGTTTTATTGTTAAATCTGGATTGAAACCCTAGTAAATATATTGAATCTTCTAATGATCACTTGGATCTTCCAAGGTGCCTATATATCTCCATGTATTATCAATCAGTTCTTCTCTAAATAATATATATTTCTGGAGTTAGTACATGTAGTTTATTTATAAATAAAAATTACTATATTGTGTTGAGCAGCTACGCAAACGGTACCCAGATTTACATGTATACACATATGGTGCTCTCCCATGTGTGGGTCTGGTGGTAGCAGATGCTTGTTCTGAATTCATTACCAGGTATTGCCAATGTGTGATTATCTGTGAGTCAATTAAGTGTTGCTGCTCATATGCTAGAAAATTTACTTCCATTCTTGTTAACATCTTTTCAGCATTGTAAACAATGATGAATTTTCAGCGCGCCTTTCAGTAGCATCAATTATGAGACTTCAAGCAGCTGCACTTAAGGCATTGTCAGAAGATGGCACTATTGATATTACAACAATTCTTAAACTTGCTCAGCACTTTACTTCATTGACCGTCTGTCAGAAAAGCATGAACGACGGAGAATCGTCAGTGAATTCTTTGACAGCAATGTCAAGTTGTACAAACCAAATCAACCATGGCCAACTTGAAAATGGTACTACTGAACTTTTTGAATTTGCCATATGAATACATGCCTCATTAAATCATGTTGTGTCTGGTTAACTGTATTTGTCTGCAGCTTCTTCTAGTTGTAACTATTTCATGCATAAGTGCTACTGCTATTTCTGCAGGATTGGCAAAGCGTGAAGCAGGATCCTCTGTTTTGCATGACATAGATACCGATTTTAGGTGTGATGATGAAATCGTTTCAACTGAATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTACCTTGGAGGTATTTGAATTAGCAGATTCTTTTATATTTTTTTCAATGATTTTCCGTAGACGTAATACTATCATCTACTTCTTCAGATGTCAGACTGCACTTGAAAACATACTCAAGACTGGACAACTTAAAACTCCAGATGATGCATCTGAAATTGTGTGATTCCTACACAAGCAGTGGGCTTTAGGCACCAAAAATTCAGTTACCAAAACATGACATATACGTACATAAAAGAGACAACCACATCTGATCAAGGCCATGTAAGATGTTATTAATTATGAGAGTACAAGAAACAAAATACCCCAAGTAGAGTGTTAAAAAAGTTATGTATTTATTGTTACTATTGATTAAAATTTTCTTAATAGTTTGTTGCTCATCTCTTACTAATTATTATGCACATACTTTATCAGTGATGTATGCCCTCTGTTAGTTTTAATATTATTATATGTTCGACGTGTCATTTAGATTTCAGATTGATTATTGTATTTGTTACATTTTTCATATGCTTGATTGATATTAGGCAAAAA</genome_strand>
        <mrna_strand>GAGNAGGATGNGACCCTTTGGGATATGGTGTGCGAATAGTAGGGCATTCCCTTGGAGGAGCGATTGCTGCAGTATTGGGAATGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCAAACGGTACCCAGATTTACATGTATACACATATGGTGCTCTCCCATGTGTGGGTCTGGTGGTAGCAGATGCTTGTTCTGAATTCATTACCAG............................................................................................CATTGTAAACAATGATGAATTTTCAGCGCGCCTTTCAGTAGCATCAATTATGAGACTTCAAGCAGCTGCACTTAAGGCATTGTCAGAAGATGGCACTATTGATATTACAACAATTCTTAAACTTGCTCAGCACTTTACTTCATTGACCGTCTGTCAGAAAAGCATGAACGACGGAGAATCGTCAGTGAATTCTTTGACAGCAATGTCAAGTTGTACAAACCAAATCAACCATGGCCAACTTGAAAATG........................................................................................................................................GATTGGCAAAGCGTGAAGCAGGATCCTCTGTTTTGCATGACATAGATACCGATTTTAGGTGTGCTGATGAAATCGTTTCAACTGAATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTACCTTGGAG.............................................................................ATGTCAGACTGCACTTGAAAACATACTCAAGACTGGACAACTTAAAACTCCAGATGATGCATCTGAAATTGTGTGATTCCTACACAAGCAGTGGGCTTTAGGCACCAAAAATTCAGTTACCAAAACATGACATATACGTACATAAAAGAGACAACCACATCTGATCAAGGCCATGTAAGATGTTATTAATTATGAGAGTACAAGAAACAAAATACCCCAAGTAGAGTGTTAAAAAAGTTATGTATTTATTGTTACTATTGATTAAAATTTTCTTAATAGTTTGTTGCTCATCTCTTACTAATTATTATGCACATACTTTATCAGTGATGTATGCCCTCTGTTAGTTTTAATATTATTATAA.........................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330183" ref_strand="+" ref_description="SGN-U330183        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, contains Pfam profile PF01764: Lipase | chr1:1733038-1737484 FORWARD | Aliases: T20M3.5, T20M3_5(evalue: 1e-64, score=242) genbank/nr: OJ991113_30.24(evalue: 2e-65, score=251)">
      <seq>ttgttctgtggcacagttacttggtgatcttgtcacttaccgggcatctggaacaggtcatttagagctcttggcaggactagctttattgcagaattcttcttccttctctaaatcctatgaagagtcaagggttgtacccattgaaaggatgcgcaaggctgctttctatcatccatttgctgaagcagcctacacgggtctattacttgatataggaagaaatcctgtacttttttcttgttcatggctctataggcaaggcattcttgctccctggctttggaacaggcgacctttactagaaggtgacaactggtggcgaggtcatgcagcagccttcttgaaacatgttcatttgtcagcacatatgctcagaaaagggcgtgttaatcaagggaagtgtaaagcagcatactttattgtggttttgcataatgtgaaatctgttgtaattgctgtgaggggaactgagacccccgaagacctcataactgatggtttaggcagggaatgctgccttactgaagaagaattagatagcctgctaaatggcaatcattgtgatccataccttcatcaaagagtggtttcgtccactccacactatgcacacttcggagtagttgaggccgcacgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="58063" stop="51829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57763" g_stop="57687" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57686" i_stop="56537" i_length="1150">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56536" g_stop="56415" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="199" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56414" i_stop="56342" i_length="73">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56341" g_stop="56250" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="291" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56249" i_stop="55184" i_length="1066">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55183" g_stop="55078" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="397" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55077" i_stop="53187" i_length="1891">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53186" g_stop="53032" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="552" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53031" i_stop="52220" i_length="812">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52219" g_stop="52129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="643" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U330183" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57763" e_stop="57687"/>
          <exon e_start="56536" e_stop="56415"/>
          <exon e_start="56341" e_stop="56250"/>
          <exon e_start="55183" e_stop="55078"/>
          <exon e_start="53186" e_stop="53032"/>
          <exon e_start="52219" e_stop="52129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAGGTTCGTGCTGATATATAGGGGGTCTGTGTACTTTACTTTTACTTATTCTTTATTTGATGGATATAATACACTTAATCATTCTACAGGAAGTGTGAAAGAATCTGGGTATTCAACCTAAAATCTTAAGACAATTAGTAGACTGATGCATCCTTCGGGGTGGTCCAGTGGTTTGGGCTTGTGATTTACATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCAAGAGAAAGCAAGGGGTTTGCCTTCTTGGTCGAGCTCGTCGCACTGGGCTTGCTTATTGTCGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAAGAGCGGGAATTTTACCCTGCGCGCAACCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATAAAATAAAAATAAAAATAGTAGAGTGATGCAAGACCTTAAATGCCTTTTGGATGCCCTTTTATACTCGATGTGGGACTGGGACATGAAAGGTCCTTAAAAAATCAAAGCTGTTCTAATATTGTATTATGTAGTCTAACATCTGTGCCAAAATCATGCTGGTTGTACATGCATCTGGAGAAGCGTATCCCACATTTCTTAACTAATGAGGGTACCTCCTTAGTATGTTAGGTGTATAGAGTGTAAGCATATCTGATAGTAGGGATGACATAGAAACATAAATAACCTTTGCTCACCCCCCAAAAAGAAAGGACATAGGGTTATCTACACTTACTACAACTAGTTTAGGATATTTGGATGCTGCAGTTCTTTTTAGAAATAGATATTTGATGTTCAAGAGTGATTTCTCTAAGGAAAAGTTGGTATTGATTTAGAAATAGCTATATAAGAAGTTACAAAGTTTTATGTTGGAAACAAAATGGAAAAGAATTCAAAGTTCATTTGAAAAACTTAGAGATTTTAACTGCAAGGGGAACTAAGAGGATAATACTTATTGAATTGACATGATCAAGGTTTTCTGGATTGTTATGCGTTCACTTTGTTCAGTATAGTTCTCATCCAACATTACAGTCAAAATGATAGTCATGAATGCTAGAAGTGCTTTAAATATTGGATTTGTTTTCTATTTCCTCGATTTGGAAGTATTCACTTTGAAAACAAGCTCATCTCTTTCTATCAGTAAGGTAAAAGAAAATGATCTCTTCTTGATATTCAGGACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACGGTATGATAACAAGGCATTGTAATTTGACTTGATTATAGCTCTGCTTATTTTGATGTGGAATGGTCAATTGCAGGGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAGGTCAGACACCCACTGGTTTATCTTAGTTGTAAGATTACTTGGATTTTTAGAGCATGAAATGACATTTGCTTTTTTAAAGTTTAAAAGAAAGTGTTTCAGTGGAAAACCATACACGAGGCTGCAAGTTATACATCAGGATATGGATGAAATACATGGGAACAAAAGCCTGAGAATAAATGGACTCCTATGTGAGTTGACAGGATGAATTAATTGGAATATGGCATAGAAGATTCTCTAACTTTATGAGCAAAAGGATCAACATATCAGACAAGTTGCCAAAAAATGTGATTGTAATGTTTTATGGTAAAGTTGCCTCCATGTGACCAGGAGGTCACAGGTTCGATCTATGGAAACAACCTCTTGTAGAAATGCAGGGTAAGACTGCGTACAATAGAACCTTGTGGTCCAGCCCTTCCTGGGCCCCGTGCTTAGCAGGAGCTTAGTGCACCAGGATACCTTTTTATGGGAGGAGAGTCTAGCTTTGTCGTATGTGGATGAAATAAACAAATGACTATTCCTTAAATAGACCATATACAAGCTCCAATTCTCGCTAGTAAAAGAAGTAATCTTCTTTTGATCACCTCTAAGAGCTTTGGCTTAAAGGAACTCTCTACTTAGCCCTCTTAAATCTGAAAGATCTTGCGAAAAATTAAGATGCTCATCACTCTTAAGTATCCAAGAAGCTAGTTAGAGTATCATACTTCCATACACGGTACAACCCGTGGTGCATGATAACTTCTTGCTGCCTTGCTCCAATCAGGGGACTTCAAATGCAAGTCCACTCTAGTACTGGTGGCAGGAACTGATTTTAAACATAAAAGGATGTAATGGGAACCTTGGTTCTTGTAGCTTTCTTGATTTATATTCAAATACCTGATAATTTAAGACCCAGCACAATCAAATGAAGATTCCTGCTAAGGATTATTGACTTCTTTAAATCTGTTTTCCTTAGAGAAATTCCGAAACCTTATTTCCGAGACACTTTGTCCTTTTCAAACTGTTATTTGATTGTTCGCATAGTCGCTTGATTCTTCTTTTCTTTTTGGAATCAAAATGTATTGTGTAGGCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAAGTAAGTCTAGCTTTAGATCTCTAGGCTATTTTTGGCCGCAAATGTTTTGTGATGACATTCCTAAGTTCTGAACTGTGATCACCTAACTGTAATTCGTGACCTTGTTTCCGGTTATTTATTTGGTTCTATGTTTGTAAGGACATATTGGAACTATGTGATGTCCTACCCCGTGAACTGCATTTTTGATGTCTAAGTTATTTATAAACCATGTGAAGTCTGAACTGTCAGATTGTCATTAAGGTCTGTAATTTCACAAGTTTAAATTGGTTTGAGACTTCTATTCTAGTTCTGAAAAGCGACCGCTTCGTCGCGTGAGGTGATGCAAGGTGAGGGGTGATCGTGCTGGGGGTAACAGTGCAACTTCACCGAATTGCATGCTTAGATAGGAGAAGCTCAAAGCTTGAGATAGACAAACATTTTTGGTCTATATAGGAATGGCAATCGGGCGGGGTGGATGTAGGGTGGGTCTGATTTTACCTTATGCTGGGCAGAGTGTGTCTGTCTTTATGCGGGGGCAGGTAAAGATTTAGTTTTGGAAAAAATTGTGCGGGGCGGGACGGATACGAGGGTTGGGTTTTAGCGAGGAAGAGAACCCGTCCAGCAACTGTCCAAAGGAAGTGTTTTAACAGTGATTTTGATAGCTTAAATCGTCTTTAGTTAATTTCCCCATTAAATTAATTCTATTTAACAAATGTAGAGCTCTGCAATATGAATTCTATTTTTGTCACATGAATTTGTTTGGTAACACCTTATGTTATTGAATTTGTAAGCCTAGATTCTTGTTCATGCTTTTTTACCCTTTTCTTAAAAAAAAATTAACCTCAAAACAAATTGTTGTTTATAATAATCAATGAATCTCAATATGATTTGATTATATAGGCAAAGTTATCATTGATTCTGACCAAGAGGGCTACTATAATTAAAATAAATATTTTATTGCTTATGCTCTACCACTATTAAAACAGCAACAAAGTTTTTTTTTATAATTTTACATTTATATCTTCAGTTGTAAGTTTGTCATGAAGAGTTAATGTTGTTAGAAGCAGAAAAATGAGGTTTATGGGGCGCGTGTTCATGCGGGGTTCATGGGGAAGAGGGGGGGGGGGGGAGGAGTGGAGCGCGGCAAAAAACAAAAAATTATACAATACGGGGCGGAGCGGGGTAAAATCTTTGCTGGTTCGCCCCGCACCGCCCCATTGCCATCCCTAGGTCTATAGTAAAGCCCATCTCATCATAAAAAGTGTGGATAGATGTTTTGGGAGTAAACTCATCAGATTACAAACACCGATCATTAGAGAAATTATGATTTTGAACTGGCATGTGTGACACTGCAACTCCAGTCCACTTGATTGCAGATACTCTTATGCAATTTTTCTTCAGTCTTTGATACTTTCCTTCTTCTTGCCCTCCGACTAGATTTGTCTTTTAGTTTTCATCTTAGCTCTACTATGTTATTGAATTCTAGGCAACAAGTCCTTGACATCCCTCAAAAGCTTTTATATATATATTGAATCAAGTCAAACCATGAGCACTTTACATGTCTTATTTTGGATTTTTTTTCTTTTTAGGCAGAAATAAGTTTTGAACTGTTGTGCTTATTGTATTTTAGGTTCCATCTTAGATCTTATATGTTATTGATATTCAGGCAACAAGTCTTCATCCCTCAAAATTTGCAGTGTATTTTTTTGGTTCTATATATATATTTTGAATCAAGTGAAACTATGATACTTCACATGTCTTATTTATTTATTAATTTATTTTGGGGGGTGGGTCGGGGGAATAGGTTTTGAACCCTTGTGCTTTGTGCTTATTGTCTTTATTTTTTCTTATCCAAAAAATAAATAGTGTCTTCCATTTTAAAAAAATAACAACTTCCATATCTCTTTTCCAGGGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAAGTAATCTCTCTTTCTCTCTCTATTTTATTTTTCTGTCTCCTCTACACACTCATTTGGTTCTTGTTACATATGCACTTGCACTTAAATCTGCTTCTGGCATCCTTTGACTGCCTTATTTGTTGACATGACATCTCTGCATTTATCTTTGAAATTCCAGCTGTGCGTCTTAAGTACTTGTTGAGATTAGGTACTTGGGACCATTAAAATACCTTGCAAGTTCCCAATTGCCAGGACTCCTGGATAAATGTTTTTGGATTACCACCTCTCAACAGTCCCTTTCTCATGTCCGATTCTTAGGTTTTTGCAGATCATGGACCTTAGACTTGAAAAATAAAAAACCAGACCATCTTTTTTTTTTTTTGACAAGGAAACAAATCTGTATATGAATCACCAACCCAAAAGTGTTAACATACACAGTGTAATCTGTATATAGGGTCTCAATGTAATAATGTAGAGACACAATTCAATAACATCTTTTTTCAATATTTCTCACATGGTATTAGAACCTCTACGATGTTGGTAGAGAATCAAAGAACTTCCACTGCAGGCGTGCGGCTATTACCGATATATGCCACCTGTCTGGCCAACGATAAAAAACCATAGAAAGTTAGGAAAAATGATCTATACTCACATAAGTGATTTCTTGGGTTAGATTAAAGGAATCAAGAAGAGATTGAACTTTTGTTGTAGCAATATTTGTGATTTCTTTTTTGCTCTCATTACTGCCTTAATGTTCTGTACTTGGTTTCTGCATGGCATATAAGCACCACTATCTGACTATTCTCCATTTTTTTTGTTTCTTAATACATCAGTGGCAATCATTGTGATCCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTCCGGAGTAGTTGAGGCCGCACGTGAT</genome_strand>
        <mrna_strand>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACG.........................................................................GGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAATCATTGTGATCCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTTCGGAGTAGTTGAGGCCGCACGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325967" ref_strand="+" ref_description="SGN-U325967        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: RNA-directed(evalue: 1e-85, score=318)">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="67652" stop="66322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67357" g_stop="66622" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U325967" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67357" e_stop="66622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338284" ref_strand="+" ref_description="SGN-U338284        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: RNase(evalue: 2e-76, score=161)">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="67715" stop="66376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67416" g_stop="66676" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U338284" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67416" e_stop="66676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345356" ref_strand="+" ref_description="SGN-U345356        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|53689767|gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum] (evalue: 7e-22, score=105)">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="73202" stop="74336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73502" g_stop="74036" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U345356" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73502" e_stop="74036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGTATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGGGCCACCACAACATCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTCTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATCGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAACATCGCACATAAAACAGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCATGAATAAGGACGGATATATATTTTGAACAAATAGGAATTTGTTTGTTTGGAGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346850" ref_strand="+" ref_description="SGN-U346850        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 2e-30, score=135)">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="74043" stop="75025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74340" g_stop="74725" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U346850" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74340" e_stop="74725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGCCGGGGCCACTGTTATCTGCTCCCCGATCACGGGCGAGGTATTTTCCGCTCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGCTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCCTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320366" ref_strand="+" ref_description="SGN-U320366        Tomato 200607 #1 [8 ESTs aligned]">
      <seq>tcattttcccccctctaactcatttctccaagtagttcatcttttatcttcgtcttgttcaagacactttctattagtttatcgctttaagtgctaatcttttgtatgttttattgcatgtgaaaccctcctcgagtcctcatggactttattccatctcactacacttcctcatcgagccataaaggctcagaatatcttcttcgagtcatagaaccctctcaaaaggtgtacaggtcggaagaacagcagaaaatgcactgctggagattgattctggttcaccagaacttggaaaattgctggaaattacagttgcatatattgagaagctgtataccaaccatatacacagtttataccgtgatatacatatcaaaagatgtacaggaggcctagttcgaaacctgggttgatggcagtaaagtacgctgctgaaaaagaatttttcaactctcgaaagttgaaaaacaggctgatatacagcctgtatacactgatatacagaaacgttataccttaaataggtgtaaaaatatgaatggcagcaggcgtgcgaaaattcgaacttcatgaagatcgaaggtgctcgaggaaggagtattagaagatttttttttatttatttattaagttgtatttattttgggcataagcccttgtcatttttactttccgtatataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="78971" stop="77687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78671" g_stop="77972" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U320366" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78671" e_stop="77972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTATCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTC-AAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTG-AAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTT</genome_strand>
        <mrna_strand>TCATTTTCCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATATCTTCTTCGAGTCATAGAACCCTCTCAAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTTGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTACGCTGCTGAAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCGAGGAAGGAGTATTAGAAGA--TTTTT-TT-TTATTTATTTATTAAGTTGTATTTATTTTGGGCATAAGCCCTTGTCATTTTTACTTTCCGTATATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337098" ref_strand="+" ref_description="SGN-U337098        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttttttttatacggaaagtaaaaatgacaagggcttatacccaaaataaatacaacttaataaataaataataataaaaaaatcttctaatactccttccttgagcaccttcgatcttcatgaagttcgaattttcgcacgcctgctgccattcatatttttacacctatttaaggtataacgtttctgtatatcagtgtatacaggctgtatatcagcctgtttttcaactttcgagagttgaaaaattcttttcagcagcttactttactgccatcaacccaggtttcgaactaggcctcctgtacatcttttgatatgtatatcacggtataaactgtgtatatggttggtatacagcttctcaatatatgccactgtaatttccagcaattttccaagttctggtgaaccagaatcaatctccagcagtgcattttctgctgttcttccgacctgtacacctttgagagggttctatgactcgaagaagacattctgagcctttatggctcgatgaggaagtgtagtgagatggaataaagtccatgaggactcgaggagggtttcacatgcaataaaacatacaaaagattatcacttatagcgataaactaatagaaagtgtcttgaacaagacgaagattaaagaatgactacttggagaaatgagttagagggggataaatgacttcaaaaataattccgaatgatattaagaaataaaatctcacaacaagtagggataataacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="77688" stop="79035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77980" g_stop="78735" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U337098" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77980" e_stop="78735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAAATATACGGAAAGTAAAAATGACAAGGGCTTATACCCAAAATAAATACAACTTTATAAATAAATAATAATAAAAAAATCTTCTAATACTCCTTCCTTGAGCACCTTCGATCTTCATGAAGTTCGAATTTTCGCACGCCTGCTGCCATTCATATTTTTACACCTATTTAAGGTATAACGTTTCTGTATATCAGTGTATACAGGCTGTATATCAGCCTGTTTTTCAACTTTCGAGAGTTGAAAAATTCTTTTCAGCAGCTTACTTTACTGCCATCAACCCAGGTTTCGAACTAGGCCTCCTGTACATCTTTTGATATGTATATCACGGTATAAACTGTGTATATGGTTGGTATACAGCTTCTCAATATATGCCACTGTAATTTCCAGCAATTTTCCAAGTTCTGGTGAACCAGAATCAATCTCCAGCAGTGCATTTTCTGCTGTTCTTCCGACCTGTACACCTTTGAGAGGGTTCTATGACTCGAAGAAGACATTCTGAGCCTTTATGGCTCGATGAGGAAGTGTAGTGAGATGGAATAAAGTCCATGAGGACTCGAGGAGGGTTTCACATGCAATAAAACATACAAAAGATTAGCACTTAAAGCGATAAACTAATAGAAAGTGTCTTGAACAAGACGAAGATAAAAGATGAACTACTTGGAGAAATGAGTTAGAGGGGGATAAATGACTTCAAAAATAATTCCGAATGATATTAAGAAATAAAATCTCACAACAAGTAGGATAAATAACAG</genome_strand>
        <mrna_strand>TTTTTTTTTATACGGAAAGTAAAAATGACAAGGGCTTATACCCAAAATAAATACAACTTAATAAATAAATAATAATAAAAAAATCTTCTAATACTCCTTCCTTGAGCACCTTCGATCTTCATGAAGTTCGAATTTTCGCACGCCTGCTGCCATTCATATTTTTACACCTATTTAAGGTATAACGTTTCTGTATATCAGTGTATACAGGCTGTATATCAGCCTGTTTTTCAACTTTCGAGAGTTGAAAAATTCTTTTCAGCAGCTTACTTTACTGCCATCAACCCAGGTTTCGAACTAGGCCTCCTGTACATCTTTTGATATGTATATCACGGTATAAACTGTGTATATGGTTGGTATACAGCTTCTCAATATATGCCACTGTAATTTCCAGCAATTTTCCAAGTTCTGGTGAACCAGAATCAATCTCCAGCAGTGCATTTTCTGCTGTTCTTCCGACCTGTACACCTTTGAGAGGGTTCTATGACTCGAAGAAGACATTCTGAGCCTTTATGGCTCGATGAGGAAGTGTAGTGAGATGGAATAAAGTCCATGAGGACTCGAGGAGGGTTTCACATGCAATAAAACATACAAAAGATTATCACTTATAGCGATAAACTAATAGAAAGTGTCTTGAACAAGACGAAGATTAAAGAATGACTACTTGGAGAAATGAGTTAGAGGGGGATAAATGACTTCAAAAATAATTCCGAATGATATTAAGAAATAAAATCTCACAACAAGTAGGGATAATAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326986" ref_strand="+" ref_description="SGN-U326986        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>tatagtctgcgtctgaaatgtcttcgataaacagttgcatttctccctttgatcgtaatcgtcttctcaagttttcctcgtcttttcaacttagcatgttgtttcgatcgcgaagtcgctacctttgattgtgttgttgttgttgttctcgcttttcgtttcatggctgctgaaggaatctgttcaacttttccaaatgtgatgtattcttgtgtgtttgttgaaatgcgaatgaggttctttctcatctcccaatagtttgtgatagtcgaatttatttcggaatgttttaaggttgagttttagttcatttttttccagctaaaggcatggttgttcatggcggtgttctccgttagaaaatttcatgaacgcacagtccttccatatgcttctctctttgcattccacatgtatgttttgtgtttatgtgtgatacggtaatttggaaataagtatttttcgtatttagcatcatcatgtcttgccaattggatatgctgtaccaatgaagtatggcatgtttactttgcatttactaaacagcagtagtgcatcctcatgcagatgacaaattcattaatatgtgtacatgcattgcttgcccctgttatttatcctacttgttgtgagattttatttcttaatatcattcggaattattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="79642" stop="78376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79342" g_stop="78676" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U326986" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79342" e_stop="78676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAATTCATTAATATGTGTACATGCATTGCTTGCCCCTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTT</genome_strand>
        <mrna_strand>TATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAATCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAATTCATTAATATGTGTACATGCATTGCTTGCCCCTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341973" ref_strand="+" ref_description="SGN-U341973        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaacattggggatttgattttaaagttggaattttgttgaaatttgagagataaaaatctggaagagtgttgggagttagaaatttggttggacgattgagcgaaaaattgaagagagggaaagagtcgcgcaactcaagagactgaagtcacgatcctgttccctttgctcgtcgggtcgttttcaatacagctttgagctcatttggtggtggaagctcgttacctcactcgtcgttgccgtttgctgcataaaaaggggtgagaatcgacccttattttgtttatgactcgtttttttcgctcgattgttgcttgtatgtggttggctgacatttggttgtgactcgaagtctgtcattgcgtattgcctttcttctatagttttgctgttagtttggttgtagtccgagtcgacgttttccagttttgggagtatggggtgcaaattttgtatagtctgcgtctgaaatgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="-" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="80096" stop="79018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79796" g_stop="79318" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="-" ref_id="SGN-U341973" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79796" e_stop="79318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGGGGATTTGATTTTAAGGTTGGAATTTTGTTGAAATTTGAGAGAGAAAAATCTGGAAGAGTGTTGGGAGTTAGAAATTTGGTTGGACGATTGAGCGAAAAATTGAAGAGAGGGAAAGAGTCGCGCAACTCAGGAGACTGAAGTCACGATCCTGTTCCCTTTGCTCGTCGGGTCGTTTTCAATACAGCTTTGAGCTCATTTGGTGGTGGAAGCTCGTTACCTCACTCGTCGTTGCCGTTTGCTGCATAAAAAGGGGTGAGAATCGACCCTTATTTTGTTTATGACTCGTTTTTTTCGCTCGATTGTTGCTTGTATGTGGTTGGCTGACATTTGGTTGTGACTCGAAGTCTGTCATTGCGTATTGCCTTTCTTCTATAGTTTTGCTGTTAGTTTGGTTGTAGTCCGAGTCGACGTTTTCCAGTTTTGGGAGTATGGGGTGCAAATTTTGTATAGTCTGCGTCTGAAATGTCTTC</genome_strand>
        <mrna_strand>AAACATTGGGGATTTGATTTTAAAGTTGGAATTTTGTTGAAATTTGAGAGATAAAAATCTGGAAGAGTGTTGGGAGTTAGAAATTTGGTTGGACGATTGAGCGAAAAATTGAAGAGAGGGAAAGAGTCGCGCAACTCAAGAGACTGAAGTCACGATCCTGTTCCCTTTGCTCGTCGGGTCGTTTTCAATACAGCTTTGAGCTCATTTGGTGGTGGAAGCTCGTTACCTCACTCGTCGTTGCCGTTTGCTGCATAAAAAGGGGTGAGAATCGACCCTTATTTTGTTTATGACTCGTTTTTTTCGCTCGATTGTTGCTTGTATGTGGTTGGCTGACATTTGGTTGTGACTCGAAGTCTGTCATTGCGTATTGCCTTTCTTCTATAGTTTTGCTGTTAGTTTGGTTGTAGTCCGAGTCGACGTTTTCCAGTTTTGGGAGTATGGGGTGCAAATTTTGTATAGTCTGCGTCTGAAATGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342518" ref_strand="+" ref_description="SGN-U342518        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G07280.1 | Symbol: None | leucine-rich repeat protein kinase, putative / extra sporogenous cells (ESP), identical to extra sporogenous cells (Arabidopsis thaliana) gi:23304947:emb:CAD42912; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:2285041-2288687 FORWARD | Aliases: T28J14.220, T28J14_220 (evalue: 8e-30, score=117) genbank/nr: gi|34906992|ref|NP_914843.1| putative receptor-like protein [Oryza sativa (japonica cultivar-group)] gi|19386763|dbj|BAB86144.1| putative receptor-like protein [Oryza sativa (japonica cultivar-group)] gi|33383178|dbj|BAC81207.1| putative leucin-rich repeat protein kinase [Oryza sativa (japonica cultivar-group)](evalue: 2e-49, score=153)">
      <seq>aagttttgcaatagtcgctggaattggaccttcaagcatattgttgccgagtgagatccccattaatgtttttgactcccatagttgatctggtaccatcccagagaattggtttttcgatagctcaagagtaataagctgaagctccccaagataagaaggcagtttacctgagagattgtttccagacaacaccaagtctgtgaggcttgaacagttcgcgaaagtactttggatgtcaccagtgaagttgttatccgacaacaccagcacgctcaatgatttggcaccacatatctctgaagacaactcaccagatagactgttagcactgacatcaagaacagatagcaaagggagatacagtggtgggagaggtccacttaggaagttctttgacaccattattgactctacttgcgtccagttggaaatccacataggcagggggcctgataagccgtttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="83287" stop="84356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83587" g_stop="84056" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U342518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83587" e_stop="84056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTGCAATAGTCGCTGGAATTGGACCTTCAAGCATATTGTTGCCGAGTGAGATCCCCATTAATGTTTTTGACTCCCATAGTTGATCTGGTACCATCCCAGAGAATTGGTTTTTCGATAGCTCAAGAGTAATAAGCTGAAGCTCCCCAAGATAAGAAGGCAGTTTACCTGAGAGATTGTTTCCAGACAACACCAAGTCTGTGAGGCTTGAACAGTTCGCGAAAGTACTTTGGATGTCACCAGTGAAGTTGTTATCCGACAACACCAGCACGCTCAATGATTTGGCACCACATATCTCTGAAGACAACTCACCAGATAGACTGTTAGCACTGACATCAAGAACAGATAGCAAAGGGAGATACAGTGGTGGGAGAGGTCCACTTAGGAAGTTCTTTGACACCATTATTGACTCTACTTGCGTCCAGTTGGAAATCCACATAGGCAGGGGGCCTGATAAGCCGTTTGAAT</genome_strand>
        <mrna_strand>AAGTTTTGCAATAGTCGCTGGAATTGGACCTTCAAGCATATTGTTGCCGAGTGAGATCCCCATTAATGTTTTTGACTCCCATAGTTGATCTGGTACCATCCCAGAGAATTGGTTTTTCGATAGCTCAAGAGTAATAAGCTGAAGCTCCCCAAGATAAGAAGGCAGTTTACCTGAGAGATTGTTTCCAGACAACACCAAGTCTGTGAGGCTTGAACAGTTCGCGAAAGTACTTTGGATGTCACCAGTGAAGTTGTTATCCGACAACACCAGCACGCTCAATGATTTGGCACCACATATCTCTGAAGACAACTCACCAGATAGACTGTTAGCACTGACATCAAGAACAGATAGCAAAGGGAGATACAGTGGTGGGAGAGGTCCACTTAGGAAGTTCTTTGACACCATTATTGACTCTACTTGCGTCCAGTTGGAAATCCACATAGGCAGGGGGCCTGATAAGCCGTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342235" ref_strand="+" ref_description="SGN-U342235        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G28040.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, contains Pfam profiles: PF00560 leucine rich repeat, PF00069 eukaryotic protein kinase domain | chr3:10436294-10439628 FORWARD | Aliases: MMG15.21 (evalue: 5e-42, score=126) genbank/nr: Protein(evalue: 2e-32, score=142)">
      <seq>aaggtccttgttagatgaatgtgccaaagcctttggttcgtgatccttatgcttatggaaaccacagccggggaggtcaaaacggggatgatggagcttcaagaagcaataacaaaagtttcaagaaccatagattcctcagtgtttcatccattgttgcaatctctgctgcagctgtgatcgcggttggagtaatgataataaccttactcaatgcttctgttcgaaggaggatcacgttcgttgacaacgccttggagagtatgtgctcaagttcttctaaatcagggaccctagccactggaaaacttgtgttattggacaccaaatcttccccggattggactaatagcagtcttgaatcaatcctagacaaggcatctcaaatcggtgaaggtgtctttgggactgtttacaaagccccattgggaggggaaggaagaatagttttaaacctgcaagaagcttgtaacatcaaaaatcctccaatatcctgaggacttcgatagagaagttagagttttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="86481" stop="87603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86781" g_stop="87303" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U342235" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86781" e_stop="87303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCTTGTAAGATGAATGTGCCAAAGCCTTTGGTTCTTGATCCTTATGCTTATGGAAACCAGAGCCGGGGAGGTCAAAACGGGGATGATGGAGCTTCAAGAAGCAATAACAAAAGTTTCAAGAACCATAGATTCCTCAGTGTTTCATCCATTGTTGCAATCTCTGCTGCAGCTGTGATCGCGGTTGGAGTAATGATAATAACCTTACTCAATGCTTCTGTTCGAAGGAGGATCACGTTCGTTGACAACGCCTTGGAGAGTATGTGCTCAAGTTCTTCTAAATCAGGGACCCTAGCCACTGGAAAACTTGTGTTATTGGACACCAAATCTTCCCCGGATTGGACTAATAGCAGTCTTGAATCAATCCTAGACAAGGCATCTCAAATCGGTGAAGGTGTCTTTGGGACTGTTTACAAAGCCCCATTGGGAGGGGAAGGAAGAATAG---T-AGCTGTCAAGAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGC</genome_strand>
        <mrna_strand>AAGGTCCTTGTTAGATGAATGTGCCAAAGCCTTTGGTTCGTGATCCTTATGCTTATGGAAACCACAGCCGGGGAGGTCAAAACGGGGATGATGGAGCTTCAAGAAGCAATAACAAAAGTTTCAAGAACCATAGATTCCTCAGTGTTTCATCCATTGTTGCAATCTCTGCTGCAGCTGTGATCGCGGTTGGAGTAATGATAATAACCTTACTCAATGCTTCTGTTCGAAGGAGGATCACGTTCGTTGACAACGCCTTGGAGAGTATGTGCTCAAGTTCTTCTAAATCAGGGACCCTAGCCACTGGAAAACTTGTGTTATTGGACACCAAATCTTCCCCGGATTGGACTAATAGCAGTCTTGAATCAATCCTAGACAAGGCATCTCAAATCGGTGAAGGTGTCTTTGGGACTGTTTACAAAGCCCCATTGGGAGGGGAAGGAAGAATAGTTTTAAACCTGCAAGAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345408" ref_strand="+" ref_description="SGN-U345408        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G28040.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, contains Pfam profiles: PF00560 leucine rich repeat, PF00069 eukaryotic protein kinase domain | chr3:10436294-10439628 FORWARD | Aliases: MMG15.21 (evalue: 1e-25, score=114) genbank/nr: Protein(evalue: 7e-29, score=130)">
      <seq>gatactcaatgatcatgtgagagttttgcttgagcaaggcaatgtgttggagtgtgttgatccaactatgaatacttatcctgaagaggaagttttgcctgttctgaagttggcattggtgtgcacttctcaaataccatcaagtaggccttcaatggctgaagtggttcaaatcttgcaggtcatcaaaacacctgttcctcaaagaatggaagtatactaaaacttgttacaaacttgatgaatttccctttctctttgactttctatcatatcctattgttgttatcttaacctcctaatctgatgtttttggactagatagtgatagagagagttttgtacttctctgtcatttgatgaaatatatgagaggttggttcannnaanaaaaaaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0017K18-lehRJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0017K18.2" temp_strand="+" temp_description="C09SLm0017K18.2  EF647611.1 htgs_phase:1 submitted_to_sgn_as:C09SLm0017K18 upload_account_name:spain">
        <position start="87499" stop="88482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87799" g_stop="88173" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0017K18.2" gen_strand="+" ref_id="SGN-U345408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0017K18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87799" e_stop="88173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</genome_strand>
        <mrna_strand>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7529" PGL_stop="6707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7529" e_stop="6707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7529" e_stop="6707" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7529" stop="6707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATTATATTTTTCTGGTTCTTTGCCTTTTAATTTAGTCTCTGCGCCTCTTTGGATTTATCGAAGGTACTCTCACTTTTCTTTTTGAGCTTCCAATGTAAATTAGTATTCTTGATGTTTCATTATAACTTGTAACACATATAGTAATTATACTTGGTTCGATGAAATTGTTTGATCTTAAATTTATGCAACAAATATCGCTCGTAAGTCTACTTGGATCTTGATGAGTAAGAACAAATGTTTTGGTTTTGTAATGGATATTTGTATATTGGTCAAATTTTTCTTACATTGAACTATTCCTACCAGGAGAATGGCTATTAGCTTAGTGGTAGAGCGGAGGATCCTTGATTATTATGTTGAATGTGAGGTGTTTCATTGTTCTTTTATTTAGGTACAAATATAAAGGATGCAGATATTTGTCAAATCACTCACAGGCCAGACCATGACACTAGATGTGGAAACCTCTGACACCATTGATAGTGTGAAAGACAAAATCTATGAAAAAACAGGGATAAAAGCAGAACATCAGAGGTTAATATTTGGTGGCAAGCAACTGGAAAATGGTACTGTGAAAGATTATGACATCAAAAGAGAGTCCACTCTTCATCTTGTTCTTCGCTTGCTTGGTGCAGCTACATCTTGAATTTTCTTACACTATGATTTTTGTACTTTATGTTTAAAGCTTTTAAGTCAACTCAGAAATGAGCAGATGAATAAGTTACTTGGATGTATATATGCTTCATCATTGTGTTTACTACTACTTGTCTTCAAACAAGAGATATGCTTCAGGATAATTTAATGCTATATAGTATTTTTCTTTTAA</gDNA_template>
            <first_frame> H  I  I  F  F  W  F  F  A  F  *  F  S  L  C  A  S  L  D  L  S  K  V  L  S  L  F  F  L  S  F  Q  C  K  L  V  F  L  M  F  H  Y  N  L  *  H  I  *  *  L  Y  L  V  R  *  N  C  L  I  L  N  L  C  N  K  Y  R  S  *  V  Y  L  D  L  D  E  *  E  Q  M  F  W  F  C  N  G  Y  L  Y  I  G  Q  I  F  L  T  L  N  Y  S  Y  Q  E  N  G  Y  *  L  S  G  R  A  E  D  P  *  L  L  C  *  M  *  G  V  S  L  F  F  Y  L  G  T  N  I  K  D  A  D  I  C  Q  I  T  H  R  P  D  H  D  T  R  C  G  N  L  *  H  H  *  *  C  E  R  Q  N  L  *  K  N  R  D  K  S  R  T  S  E  V  N  I  W  W  Q  A  T  G  K  W  Y  C  E  R  L  *  H  Q  K  R  V  H  S  S  S  C  S  S  L  A  W  C  S  Y  I  L  N  F  L  T  L  *  F  L  Y  F  M  F  K  A  F  K  S  T  Q  K  *  A  D  E  *  V  T  W  M  Y  I  C  F  I  I  V  F  T  T  T  C  L  Q  T  R  D  M  L  Q  D  N  L  M  L  Y  S  I  F  L  L  </first_frame>
            <second_frame>  T  L  Y  F  S  G  S  L  P  F  N  L  V  S  A  P  L  W  I  Y  R  R  Y  S  H  F  S  F  *  A  S  N  V  N  *  Y  S  *  C  F  I  I  T  C  N  T  Y  S  N  Y  T  W  F  D  E  I  V  *  S  *  I  Y  A  T  N  I  A  R  K  S  T  W  I  L  M  S  K  N  K  C  F  G  F  V  M  D  I  C  I  L  V  K  F  F  L  H  *  T  I  P  T  R  R  M  A  I  S  L  V  V  E  R  R  I  L  D  Y  Y  V  E  C  E  V  F  H  C  S  F  I  *  V  Q  I  *  R  M  Q  I  F  V  K  S  L  T  G  Q  T  M  T  L  D  V  E  T  S  D  T  I  D  S  V  K  D  K  I  Y  E  K  T  G  I  K  A  E  H  Q  R  L  I  F  G  G  K  Q  L  E  N  G  T  V  K  D  Y  D  I  K  R  E  S  T  L  H  L  V  L  R  L  L  G  A  A  T  S  *  I  F  L  H  Y  D  F  C  T  L  C  L  K  L  L  S  Q  L  R  N  E  Q  M  N  K  L  L  G  C  I  Y  A  S  S  L  C  L  L  L  L  V  F  K  Q  E  I  C  F  R  I  I  *  C  Y  I  V  F  F  F  * </second_frame>
            <third_frame>   H  Y  I  F  L  V  L  C  L  L  I  *  S  L  R  L  F  G  F  I  E  G  T  L  T  F  L  F  E  L  P  M  *  I  S  I  L  D  V  S  L  *  L  V  T  H  I  V  I  I  L  G  S  M  K  L  F  D  L  K  F  M  Q  Q  I  S  L  V  S  L  L  G  S  *  *  V  R  T  N  V  L  V  L  *  W  I  F  V  Y  W  S  N  F  S  Y  I  E  L  F  L  P  G  E  W  L  L  A  *  W  *  S  G  G  S  L  I  I  M  L  N  V  R  C  F  I  V  L  L  F  R  Y  K  Y  K  G  C  R  Y  L  S  N  H  S  Q  A  R  P  *  H  *  M  W  K  P  L  T  P  L  I  V  *  K  T  K  S  M  K  K  Q  G  *  K  Q  N  I  R  G  *  Y  L  V  A  S  N  W  K  M  V  L  *  K  I  M  T  S  K  E  S  P  L  F  I  L  F  F  A  C  L  V  Q  L  H  L  E  F  S  Y  T  M  I  F  V  L  Y  V  *  S  F  *  V  N  S  E  M  S  R  *  I  S  Y  L  D  V  Y  M  L  H  H  C  V  Y  Y  Y  L  S  S  N  K  R  Y  A  S  G  *  F  N  A  I  *  Y  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7126" stop="6887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMQIFVKSLTGQTMTLDVETSDTIDSVKDKIYEKTGIKAEHQRLIFGGKQLENGTVKDYDIKRESTLHLVLRLLGAATS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16230" PGL_stop="14139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16230" e_stop="16096"/>
            <exon e_start="15991" e_stop="15814"/>
            <exon e_start="14896" e_stop="14625"/>
            <exon e_start="14171" e_stop="14139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="0.576"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16230" e_stop="16096" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="15814" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15813" i_stop="14897" i_length="917"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14896" e_stop="14625" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="14624" i_stop="14172" i_length="453"/>
          </intron>
          <exon e_serial="4" e_score="0.576">
            <gDNA_exon_boundary e_start="14171" e_stop="14139" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16230" stop="16096"/>
              <exon start="15991" stop="15814"/>
              <exon start="14896" stop="14625"/>
              <exon start="14171" stop="14139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTCTTTGTGTCTAAGCAAAAGCACCAACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG : GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATG : TTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA : GTTATAAAATATAACGACAAGCAAAACTCAAAA</gDNA_template>
            <first_frame> I  F  L  C  V  *  A  K  A  P  T  E  T  L  S  T  V  R  S  N  P  N  S  S  L  I  Q  Q  *  V  T  T  I  N  N  N  P  L  L  V  C  H  H  H  K  :  D  I  R  Q  K  V  T  Q  K  M  H  T  H  H  Q  G  T  H  S  R  V  T  L  N  K  V  T  H  L  K  G  T  L  H  S  M  H  L  S  M  V  L  H  L  L  I  N  N  N  S  N  L  V  L  V  S  W  K  D   : V  W  L  L  C  A  V  A  V  S  W  M  H  A  F  D  A  V  N  D  L  C  H  V  L  V  A  K  V  Y  *  T  N  S  I  I  V  *  T  F  S  F  C  V  C  L  W  C  P  V  L  S  L  I  N  N  L  I  L  N  M  T  M  H  L  V  M  V  G  E  F  K  C  L  F  A  N  L  Y  I  I  V  Q  C  K  R  F  Y  F  F  K  :  V  I  K  Y  N  D  K  Q  N  S  K </first_frame>
            <second_frame>  S  F  F  V  S  K  Q  K  H  Q  Q  K  L  S  L  Q  L  D  P  T  Q  I  L  H  *  F  N  N  E  L  L  Q  S  T  T  T  P  C  W  C  A  T  T  T  R :   I  S  A  R  R  L  P  K  R  C  I  P  T  T  R  V  P  T  A  G  L  P  S  T  R  L  P  T  S  R  V  P  S  T  V  C  T  S  V  W  C  S  T  S  S  S  T  T  T  A  I  W  Y  W  F  H  G  R  M  :  F  G  C  S  V  L  L  L  S  L  G  C  M  L  L  M  L  *  M  I  C  A  M  C  W  W  Q  K  F  I  K  P  I  L  S  *  S  R  L  S  L  F  V  F  V  F  G  V  L  Y  C  P  *  *  I  I  *  Y  *  I  *  R  C  T  L  L  W  W  E  N  S  S  V  Y  L  P  I  Y  T  L  L  C  N  A  R  D  S  I  F  L  K :   L  *  N  I  T  T  S  K  T  Q   </second_frame>
            <third_frame>   L  S  L  C  L  S  K  S  T  N  R  N  S  L  Y  S  *  I  Q  P  K  F  F  I  N  S  T  M  S  Y  Y  N  Q  Q  Q  P  P  V  G  V  P  P  P  Q   : G  Y  P  P  E  G  Y  P  K  D  A  Y  P  P  P  G  Y  P  Q  Q  G  Y  P  Q  Q  G  Y  P  P  Q  G  Y  P  P  Q  Y  A  P  Q  Y  G  A  P  P  P  H  Q  Q  Q  Q  Q  S  G  T  G  F  M  E  G  C :   L  A  A  L  C  C  C  C  L  L  D  A  C  F  *  C  C  K  *  S  V  P  C  V  G  G  K  S  L  L  N  Q  F  Y  H  S  L  D  F  L  F  L  C  L  S  L  V  S  C  T  V  L  D  K  *  F  D  I  K  Y  D  D  A  P  C  Y  G  G  R  I  Q  V  S  I  C  Q  F  I  H  Y  C  A  M  Q  E  I  L  F  F  *   : S  Y  K  I  *  R  Q  A  K  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16143" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTINNNPLLVCHHHKDIRQKVTQKMHTHHQGTHSRVTLNKVTHLKGTLHSMHLSMVLHLLINNNSNLVLVSWKDVWLLCAVAVSWMHAFDAVNDLCHVLVAKVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16177" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPKFFINSTMSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPQQGYPQQGYPPQGYPPQYAPQYGAPPPHQQQQQSGTGFMEGCLAALCCCCLLDACF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16154" stop="16096"/>
                    <exon start="15991" stop="15814"/>
                    <exon start="14896" stop="14843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNELLQSTTTPCWCATTTRISARRLPKRCIPTTRVPTAGLPSTRLPTSRVPSTVCTSVWCSTSSSTTTAIWYWFHGRMFGCSVLLLSLGCMLLML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14783" stop="14625"/>
                    <exon start="14171" stop="14139"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFSFCVCLWCPVLSLINNLILNMTMHLVMVGEFKCLFANLYIIVQCKRFYFFKVIKYNDKQNSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16201" e_stop="16096"/>
            <exon e_start="15991" e_stop="14625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16201" e_stop="16096" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16095" i_stop="15992" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="15991" e_stop="14625" e_length="1367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16201" stop="16096"/>
              <exon start="15991" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGAAACTCTCTCTACAGTTAGATCCAACCCAAATTCTTCATTAATTCAACAATGAGTTACTACAATCAACAACAACCCCCTGTTGGTGTGCCACCACCACAAG : GATATCCGCCAGAAGGTTACCCAAAAGATGCATACCCACCACCAGGGTACCCACAGCAGGGTTACCCTCAACAAGGTTACCCACCTCAAGGGTACCCTCCACAGTATGCACCTCAGTATGGTGCTCCACCTCCTCATCAACAACAACAGCAATCTGGTACTGGTTTCATGGAAGGATGGTATGAACCTTAAAGACTCAATTTTTATGTTCATATGTTATGATTCAGTTACAGTAATTTGTATGATTTTGTTTGAGAGAGATCTGTATTGATATTGGTTTTTTGTAGAGCGGTTGAGGAGATTGTTTATCTGTCTTGTCTGTTACTATGTGTGTGTTTCTTGTTGATTTGGTGTGTCTTGTCAAAACATGATTTCTCGAATTATTATTGGTCTGTTTGATGTTTACTTTGTGAGCACTTGTATTTAATAACTATGGTTCTGGACGAGTTCTGGACGCGAACTAGAAGGGGTCCTTATCATTTGTATGTCTAGTTGAACATTAACGCGAGCAGGAGAGACAATTAGAATGCCTGAATGATTCTCTATGTGCAAACATAGTCCAGGCCTTGCCACACCTTTGATTTTATCTCTGACTGCTGAAATCGCGCCCCTATCATACTTCAGACTGGAAGGGGGTGCATGGACTAGACATAACTTGTGTTGCTTTGTCTATAGCTATAGGTTTTCCACTGTTGCTGCTGCAATAAGACAATAATGACCTCTTATCAAAGAAATCTACACTGTCACGTTAATTGTTTCTTCGTTGTAATAGACTATGGGAGTATCCTTGTTGATGCTCCATTCCACTGTAAGATAAGTAGTTAACTGATCTTTCAAAACAATCACATAATTGTCATATTAATCACACGTTTAAGTTATCGCAGTGCCAGTGAACCAATTAGACAATGGACGTGGTCTTGGCTACCCTAAATTTTCATAGAATATAGTGGTGGTCTTTCACATTTCAACAGCTTTGTGATTTTCTGTTTTAGGCGTTCCTTCTTTCTTGTAGCCTCTCCTCATTTTATTTGAGCTTGCTGTATTTGTTATTTCCGGTGGGGGACTAATCATTGGTTGTTATATTTTTGTTTTGCAGTTTGGCTGCTCTGTGCTGTTGCTGTCTCTTGGATGCATGCTTTTGATGCTGTAAATGATCTGTGCCATGTGTTGGTGGCAAAAGTTTATTAAACCAATTCTATCATAGTCTAGACTTTCTCTTTTTGTGTTTGTCTTTGGTGTCCTGTACTGTCCTTGATAAATAATTTGATATTAAATATGACGATGCACCTTGTTATGGTGGGAGAATTCAAGTGTCTATTTGCCAATTTATACATTATTGTGCAATGCAAGAGATTCTATTTTTTTAAA</gDNA_template>
            <first_frame> N  R  N  S  L  Y  S  *  I  Q  P  K  F  F  I  N  S  T  M  S  Y  Y  N  Q  Q  Q  P  P  V  G  V  P  P  P  Q   : G  Y  P  P  E  G  Y  P  K  D  A  Y  P  P  P  G  Y  P  Q  Q  G  Y  P  Q  Q  G  Y  P  P  Q  G  Y  P  P  Q  Y  A  P  Q  Y  G  A  P  P  P  H  Q  Q  Q  Q  Q  S  G  T  G  F  M  E  G  W  Y  E  P  *  R  L  N  F  Y  V  H  M  L  *  F  S  Y  S  N  L  Y  D  F  V  *  E  R  S  V  L  I  L  V  F  C  R  A  V  E  E  I  V  Y  L  S  C  L  L  L  C  V  C  F  L  L  I  W  C  V  L  S  K  H  D  F  S  N  Y  Y  W  S  V  *  C  L  L  C  E  H  L  Y  L  I  T  M  V  L  D  E  F  W  T  R  T  R  R  G  P  Y  H  L  Y  V  *  L  N  I  N  A  S  R  R  D  N  *  N  A  *  M  I  L  Y  V  Q  T  *  S  R  P  C  H  T  F  D  F  I  S  D  C  *  N  R  A  P  I  I  L  Q  T  G  R  G  C  M  D  *  T  *  L  V  L  L  C  L  *  L  *  V  F  H  C  C  C  C  N  K  T  I  M  T  S  Y  Q  R  N  L  H  C  H  V  N  C  F  F  V  V  I  D  Y  G  S  I  L  V  D  A  P  F  H  C  K  I  S  S  *  L  I  F  Q  N  N  H  I  I  V  I  L  I  T  R  L  S  Y  R  S  A  S  E  P  I  R  Q  W  T  W  S  W  L  P  *  I  F  I  E  Y  S  G  G  L  S  H  F  N  S  F  V  I  F  C  F  R  R  S  F  F  L  V  A  S  P  H  F  I  *  A  C  C  I  C  Y  F  R  W  G  T  N  H  W  L  L  Y  F  C  F  A  V  W  L  L  C  A  V  A  V  S  W  M  H  A  F  D  A  V  N  D  L  C  H  V  L  V  A  K  V  Y  *  T  N  S  I  I  V  *  T  F  S  F  C  V  C  L  W  C  P  V  L  S  L  I  N  N  L  I  L  N  M  T  M  H  L  V  M  V  G  E  F  K  C  L  F  A  N  L  Y  I  I  V  Q  C  K  R  F  Y  F  F  K </first_frame>
            <second_frame>  T  E  T  L  S  T  V  R  S  N  P  N  S  S  L  I  Q  Q  *  V  T  T  I  N  N  N  P  L  L  V  C  H  H  H  K  :  D  I  R  Q  K  V  T  Q  K  M  H  T  H  H  Q  G  T  H  S  R  V  T  L  N  K  V  T  H  L  K  G  T  L  H  S  M  H  L  S  M  V  L  H  L  L  I  N  N  N  S  N  L  V  L  V  S  W  K  D  G  M  N  L  K  D  S  I  F  M  F  I  C  Y  D  S  V  T  V  I  C  M  I  L  F  E  R  D  L  Y  *  Y  W  F  F  V  E  R  L  R  R  L  F  I  C  L  V  C  Y  Y  V  C  V  S  C  *  F  G  V  S  C  Q  N  M  I  S  R  I  I  I  G  L  F  D  V  Y  F  V  S  T  C  I  *  *  L  W  F  W  T  S  S  G  R  E  L  E  G  V  L  I  I  C  M  S  S  *  T  L  T  R  A  G  E  T  I  R  M  P  E  *  F  S  M  C  K  H  S  P  G  L  A  T  P  L  I  L  S  L  T  A  E  I  A  P  L  S  Y  F  R  L  E  G  G  A  W  T  R  H  N  L  C  C  F  V  Y  S  Y  R  F  S  T  V  A  A  A  I  R  Q  *  *  P  L  I  K  E  I  Y  T  V  T  L  I  V  S  S  L  *  *  T  M  G  V  S  L  L  M  L  H  S  T  V  R  *  V  V  N  *  S  F  K  T  I  T  *  L  S  Y  *  S  H  V  *  V  I  A  V  P  V  N  Q  L  D  N  G  R  G  L  G  Y  P  K  F  S  *  N  I  V  V  V  F  H  I  S  T  A  L  *  F  S  V  L  G  V  P  S  F  L  *  P  L  L  I  L  F  E  L  A  V  F  V  I  S  G  G  G  L  I  I  G  C  Y  I  F  V  L  Q  F  G  C  S  V  L  L  L  S  L  G  C  M  L  L  M  L  *  M  I  C  A  M  C  W  W  Q  K  F  I  K  P  I  L  S  *  S  R  L  S  L  F  V  F  V  F  G  V  L  Y  C  P  *  *  I  I  *  Y  *  I  *  R  C  T  L  L  W  W  E  N  S  S  V  Y  L  P  I  Y  T  L  L  C  N  A  R  D  S  I  F  L   </second_frame>
            <third_frame>   Q  K  L  S  L  Q  L  D  P  T  Q  I  L  H  *  F  N  N  E  L  L  Q  S  T  T  T  P  C  W  C  A  T  T  T  R :   I  S  A  R  R  L  P  K  R  C  I  P  T  T  R  V  P  T  A  G  L  P  S  T  R  L  P  T  S  R  V  P  S  T  V  C  T  S  V  W  C  S  T  S  S  S  T  T  T  A  I  W  Y  W  F  H  G  R  M  V  *  T  L  K  T  Q  F  L  C  S  Y  V  M  I  Q  L  Q  *  F  V  *  F  C  L  R  E  I  C  I  D  I  G  F  L  *  S  G  *  G  D  C  L  S  V  L  S  V  T  M  C  V  F  L  V  D  L  V  C  L  V  K  T  *  F  L  E  L  L  L  V  C  L  M  F  T  L  *  A  L  V  F  N  N  Y  G  S  G  R  V  L  D  A  N  *  K  G  S  L  S  F  V  C  L  V  E  H  *  R  E  Q  E  R  Q  L  E  C  L  N  D  S  L  C  A  N  I  V  Q  A  L  P  H  L  *  F  Y  L  *  L  L  K  S  R  P  Y  H  T  S  D  W  K  G  V  H  G  L  D  I  T  C  V  A  L  S  I  A  I  G  F  P  L  L  L  L  Q  *  D  N  N  D  L  L  S  K  K  S  T  L  S  R  *  L  F  L  R  C  N  R  L  W  E  Y  P  C  *  C  S  I  P  L  *  D  K  *  L  T  D  L  S  K  Q  S  H  N  C  H  I  N  H  T  F  K  L  S  Q  C  Q  *  T  N  *  T  M  D  V  V  L  A  T  L  N  F  H  R  I  *  W  W  S  F  T  F  Q  Q  L  C  D  F  L  F  *  A  F  L  L  S  C  S  L  S  S  F  Y  L  S  L  L  Y  L  L  F  P  V  G  D  *  S  L  V  V  I  F  L  F  C  S  L  A  A  L  C  C  C  C  L  L  D  A  C  F  *  C  C  K  *  S  V  P  C  V  G  G  K  S  L  L  N  Q  F  Y  H  S  L  D  F  L  F  L  C  L  S  L  V  S  C  T  V  L  D  K  *  F  D  I  K  Y  D  D  A  P  C  Y  G  G  R  I  Q  V  S  I  C  Q  F  I  H  Y  C  A  M  Q  E  I  L  F  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16143" stop="16096"/>
                    <exon start="15991" stop="15722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTINNNPLLVCHHHKDIRQKVTQKMHTHHQGTHSRVTLNKVTHLKGTLHSMHLSMVLHLLINNNSNLVLVSWKDGMNLKDSIFMFICYDSVTVICMILFERDLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16177" stop="16096"/>
                    <exon start="15991" stop="15801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPKFFINSTMSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPQQGYPQQGYPPQGYPPQYAPQYGAPPPHQQQQQSGTGFMEGWYEP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16154" stop="16096"/>
                    <exon start="15991" stop="15808"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNNELLQSTTTPCWCATTTRISARRLPKRCIPTTRVPTAGLPSTRLPTSRVPSTVCTSVWCSTSSSTTTAIWYWFHGRMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21776" PGL_stop="20796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21776" e_stop="21743"/>
            <exon e_start="21381" e_stop="20796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.121" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21776" e_stop="21743" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.121">
            <gDNA_intron_boundary i_start="21742" i_stop="21382" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="21381" e_stop="20796" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21776" stop="21743"/>
              <exon start="21381" stop="20796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGGTTTACTTGTTGATTCCCGCAATGGAAAG : ACGGTAGCTTCAATCGTTGGTCATTTAGACTACTCTTTTGCTTGTGCGTGGCATCCAGATGGGCGTACATTTGCCACTGGGAATCAAGATAAGACATGTCGAATTTGGGACTTGAGAAACTTATCCTCGTCTACAGCCATTCTGAAGGGAAACATCGGTGCTGCTCGATCTATCCGTTTCTCATCCGATGGACAGTTCCTTGTTGTGGCTGAACCTGCAGATTTTGTCCATATCTACAATACCAAGTCAGACTACAAGAAACGTCAGGAAATTGATCTTTTTGGTGAGATATCAGGGGTATCTCTGAGCCCAGACGACGAATCTCTTTACATTGGTATCTGGGATCGAACATATGGAAGCTTGCTAGAATACAACAGAAGGCATAGTTGTAGATATCTTGATTCGTTCGTGTAATCTTCAACCCAAGGGTTCTACAGTTCATTCACATTGAGTCCCAATATTTTGCACAAATTCGTCCCCGATTATTTTATATCAGTTCTTGATCTTGGCATTACTATGTACAGTTACACCTTGAGATTGAACTTTGTTTCTGGTTATATACAATCTCTCTCATGTACCATTTTGC</gDNA_template>
            <first_frame> R  W  F  T  C  *  F  P  Q  W  K   : D  G  S  F  N  R  W  S  F  R  L  L  F  C  L  C  V  A  S  R  W  A  Y  I  C  H  W  E  S  R  *  D  M  S  N  L  G  L  E  K  L  I  L  V  Y  S  H  S  E  G  K  H  R  C  C  S  I  Y  P  F  L  I  R  W  T  V  P  C  C  G  *  T  C  R  F  C  P  Y  L  Q  Y  Q  V  R  L  Q  E  T  S  G  N  *  S  F  W  *  D  I  R  G  I  S  E  P  R  R  R  I  S  L  H  W  Y  L  G  S  N  I  W  K  L  A  R  I  Q  Q  K  A  *  L  *  I  S  *  F  V  R  V  I  F  N  P  R  V  L  Q  F  I  H  I  E  S  Q  Y  F  A  Q  I  R  P  R  L  F  Y  I  S  S  *  S  W  H  Y  Y  V  Q  L  H  L  E  I  E  L  C  F  W  L  Y  T  I  S  L  M  Y  H  F   </first_frame>
            <second_frame>  D  G  L  L  V  D  S  R  N  G  K  :  T  V  A  S  I  V  G  H  L  D  Y  S  F  A  C  A  W  H  P  D  G  R  T  F  A  T  G  N  Q  D  K  T  C  R  I  W  D  L  R  N  L  S  S  S  T  A  I  L  K  G  N  I  G  A  A  R  S  I  R  F  S  S  D  G  Q  F  L  V  V  A  E  P  A  D  F  V  H  I  Y  N  T  K  S  D  Y  K  K  R  Q  E  I  D  L  F  G  E  I  S  G  V  S  L  S  P  D  D  E  S  L  Y  I  G  I  W  D  R  T  Y  G  S  L  L  E  Y  N  R  R  H  S  C  R  Y  L  D  S  F  V  *  S  S  T  Q  G  F  Y  S  S  F  T  L  S  P  N  I  L  H  K  F  V  P  D  Y  F  I  S  V  L  D  L  G  I  T  M  Y  S  Y  T  L  R  L  N  F  V  S  G  Y  I  Q  S  L  S  C  T  I  L  </second_frame>
            <third_frame>   M  V  Y  L  L  I  P  A  M  E  R :   R  *  L  Q  S  L  V  I  *  T  T  L  L  L  V  R  G  I  Q  M  G  V  H  L  P  L  G  I  K  I  R  H  V  E  F  G  T  *  E  T  Y  P  R  L  Q  P  F  *  R  E  T  S  V  L  L  D  L  S  V  S  H  P  M  D  S  S  L  L  W  L  N  L  Q  I  L  S  I  S  T  I  P  S  Q  T  T  R  N  V  R  K  L  I  F  L  V  R  Y  Q  G  Y  L  *  A  Q  T  T  N  L  F  T  L  V  S  G  I  E  H  M  E  A  C  *  N  T  T  E  G  I  V  V  D  I  L  I  R  S  C  N  L  Q  P  K  G  S  T  V  H  S  H  *  V  P  I  F  C  T  N  S  S  P  I  I  L  Y  Q  F  L  I  L  A  L  L  C  T  V  T  P  *  D  *  T  L  F  L  V  I  Y  N  L  S  H  V  P  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21775" stop="21743"/>
                    <exon start="21381" stop="20968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGLLVDSRNGKTVASIVGHLDYSFACAWHPDGRTFATGNQDKTCRIWDLRNLSSSTAILKGNIGAARSIRFSSDGQFLVVAEPADFVHIYNTKSDYKKRQEIDLFGEISGVSLSPDDESLYIGIWDRTYGSLLEYNRRHSCRYLDSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23400" PGL_stop="22293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23400" e_stop="22293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23400" e_stop="22293" e_length="1108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23400" stop="22293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGTTTAACTTTCTGCATACTGTTCACTAAGCTCTCAAACCATCTTGAATTCCTCTCTTTCCAAATAGCCCACCATATAACACTTCTTTGCTTTTTTTGATTTCCTATCATTAGTTACTGAGTAGTTTTGGTTGTCCGTGAAGTATAATATACTTGCTTTTTCATACAAGAGAACTGGCAGGTTGTGGAGAAGTTCCAAACTGGTCATTGTCATTATTCTCCTCCTCATCATCAACATTCTCATGTATTGGGTGTTAGTGGGATAGAATGGTTTCATGAATTTCTAGTGTAAGTTCTTTCTTTAATCAAATGAAATTCTAATATGAGGCTTTAGATGGACTGTAGTTTTCTGATTTAAATTGAGGCTGGAAGTGGTTATTTAATAATTCTTTCTTGTACGACCTTGTATTATGACATCCCAACAAGGGGCTTTTAGTATCTGAGTGACCTCAATGGGTTTTATACATTCAGGTTGAGTTTGGTGGTAGATTAGATAGGCTAGATGAAGGCCAAGCGTTTGAAGATAAATCCCATCATTCTCATTTGTTTCATCTTAGAGGACCAATTTATGGGGGGTTGAATATTTGAGATTTGGCAGTGCCATAGAGATTTGCAATGAGTACAATTGCTGTGGCTGATGGTGCAACTTCTTATATAGTAGATTGCCAACATGATTGCCTTTTTTGCTCTGACATTCTGGAATACCCCTGAGATACTCTTTTATGCTCAATTTCATGTTCATATTCTTAACTTGTATGCTGCTCATGGTTGTATTTGTTGATCTACTATTTAACTTCGGAACTTGTTTCTAGCGAGCAATTATTTTGTCGTGCTTCAATGGGTTATTGAAGTTTTTTCATTTGCTTGAAGTCAGTCATCATCAACGCACATAGTGGTATGTTGTTGTTGTAGTAGTTTTTGTACTTCATATAAGTAGTTACAACACTTTTGGATCTATATTTCCTCTTATTTGAAGTTGAGATCAATCATCAACGAGCTGCCTCTCTCTGGACTTCATTTCTCTTTTAAGATTTATAAGCCAACATCATATGTTGATTCAATCAACCAGGTATTCATATCATAAATAGAAAGCTTTTTTTTTTTTT</gDNA_template>
            <first_frame> F  S  L  T  F  C  I  L  F  T  K  L  S  N  H  L  E  F  L  S  F  Q  I  A  H  H  I  T  L  L  C  F  F  *  F  P  I  I  S  Y  *  V  V  L  V  V  R  E  V  *  Y  T  C  F  F  I  Q  E  N  W  Q  V  V  E  K  F  Q  T  G  H  C  H  Y  S  P  P  H  H  Q  H  S  H  V  L  G  V  S  G  I  E  W  F  H  E  F  L  V  *  V  L  S  L  I  K  *  N  S  N  M  R  L  *  M  D  C  S  F  L  I  *  I  E  A  G  S  G  Y  L  I  I  L  S  C  T  T  L  Y  Y  D  I  P  T  R  G  F  *  Y  L  S  D  L  N  G  F  Y  T  F  R  L  S  L  V  V  D  *  I  G  *  M  K  A  K  R  L  K  I  N  P  I  I  L  I  C  F  I  L  E  D  Q  F  M  G  G  *  I  F  E  I  W  Q  C  H  R  D  L  Q  *  V  Q  L  L  W  L  M  V  Q  L  L  I  *  *  I  A  N  M  I  A  F  F  A  L  T  F  W  N  T  P  E  I  L  F  Y  A  Q  F  H  V  H  I  L  N  L  Y  A  A  H  G  C  I  C  *  S  T  I  *  L  R  N  L  F  L  A  S  N  Y  F  V  V  L  Q  W  V  I  E  V  F  S  F  A  *  S  Q  S  S  S  T  H  I  V  V  C  C  C  C  S  S  F  C  T  S  Y  K  *  L  Q  H  F  W  I  Y  I  S  S  Y  L  K  L  R  S  I  I  N  E  L  P  L  S  G  L  H  F  S  F  K  I  Y  K  P  T  S  Y  V  D  S  I  N  Q  V  F  I  S  *  I  E  S  F  F  F  F  </first_frame>
            <second_frame>  S  V  *  L  S  A  Y  C  S  L  S  S  Q  T  I  L  N  S  S  L  S  K  *  P  T  I  *  H  F  F  A  F  F  D  F  L  S  L  V  T  E  *  F  W  L  S  V  K  Y  N  I  L  A  F  S  Y  K  R  T  G  R  L  W  R  S  S  K  L  V  I  V  I  I  L  L  L  I  I  N  I  L  M  Y  W  V  L  V  G  *  N  G  F  M  N  F  *  C  K  F  F  L  *  S  N  E  I  L  I  *  G  F  R  W  T  V  V  F  *  F  K  L  R  L  E  V  V  I  *  *  F  F  L  V  R  P  C  I  M  T  S  Q  Q  G  A  F  S  I  *  V  T  S  M  G  F  I  H  S  G  *  V  W  W  *  I  R  *  A  R  *  R  P  S  V  *  R  *  I  P  S  F  S  F  V  S  S  *  R  T  N  L  W  G  V  E  Y  L  R  F  G  S  A  I  E  I  C  N  E  Y  N  C  C  G  *  W  C  N  F  L  Y  S  R  L  P  T  *  L  P  F  L  L  *  H  S  G  I  P  L  R  Y  S  F  M  L  N  F  M  F  I  F  L  T  C  M  L  L  M  V  V  F  V  D  L  L  F  N  F  G  T  C  F  *  R  A  I  I  L  S  C  F  N  G  L  L  K  F  F  H  L  L  E  V  S  H  H  Q  R  T  *  W  Y  V  V  V  V  V  V  F  V  L  H  I  S  S  Y  N  T  F  G  S  I  F  P  L  I  *  S  *  D  Q  S  S  T  S  C  L  S  L  D  F  I  S  L  L  R  F  I  S  Q  H  H  M  L  I  Q  S  T  R  Y  S  Y  H  K  *  K  A  F  F  F  F </second_frame>
            <third_frame>   Q  F  N  F  L  H  T  V  H  *  A  L  K  P  S  *  I  P  L  F  P  N  S  P  P  Y  N  T  S  L  L  F  L  I  S  Y  H  *  L  L  S  S  F  G  C  P  *  S  I  I  Y  L  L  F  H  T  R  E  L  A  G  C  G  E  V  P  N  W  S  L  S  L  F  S  S  S  S  S  T  F  S  C  I  G  C  *  W  D  R  M  V  S  *  I  S  S  V  S  S  F  F  N  Q  M  K  F  *  Y  E  A  L  D  G  L  *  F  S  D  L  N  *  G  W  K  W  L  F  N  N  S  F  L  Y  D  L  V  L  *  H  P  N  K  G  L  L  V  S  E  *  P  Q  W  V  L  Y  I  Q  V  E  F  G  G  R  L  D  R  L  D  E  G  Q  A  F  E  D  K  S  H  H  S  H  L  F  H  L  R  G  P  I  Y  G  G  L  N  I  *  D  L  A  V  P  *  R  F  A  M  S  T  I  A  V  A  D  G  A  T  S  Y  I  V  D  C  Q  H  D  C  L  F  C  S  D  I  L  E  Y  P  *  D  T  L  L  C  S  I  S  C  S  Y  S  *  L  V  C  C  S  W  L  Y  L  L  I  Y  Y  L  T  S  E  L  V  S  S  E  Q  L  F  C  R  A  S  M  G  Y  *  S  F  F  I  C  L  K  S  V  I  I  N  A  H  S  G  M  L  L  L  *  *  F  L  Y  F  I  *  V  V  T  T  L  L  D  L  Y  F  L  L  F  E  V  E  I  N  H  Q  R  A  A  S  L  W  T  S  F  L  F  *  D  L  *  A  N  I  I  C  *  F  N  Q  P  G  I  H  I  I  N  R  K  L  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0017K18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27374" PGL_stop="31286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27374" e_stop="27599"/>
            <exon e_start="27716" e_stop="27783"/>
            <exon e_start="29478" e_stop="29586"/>
            <exon e_start="29694" e_stop="29762"/>
            <exon e_start="30219" e_stop="30276"/>
            <exon e_start="30439" e_stop="30674"/>
            <exon e_start="30757" e_stop="30808"/>
            <exon e_start="30904" e_stop="31286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.938"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="27374" e_stop="27599" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27600" i_stop="27715" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27716" e_stop="27783" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27784" i_stop="29477" i_length="1694"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29478" e_stop="29586" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29587" i_stop="29693" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29694" e_stop="29762" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="29763" i_stop="30218" i_length="456"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30219" e_stop="30276" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.875">
            <gDNA_intron_boundary i_start="30277" i_stop="30438" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30439" e_stop="30674" e_length="236"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30675" i_stop="30756" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30808" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="30809" i_stop="30903" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="30904" e_stop="31286" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27374" stop="27599"/>
              <exon start="27716" stop="27783"/>
              <exon start="29478" stop="29586"/>
              <exon start="29694" stop="29762"/>
              <exon start="30219" stop="30276"/>
              <exon start="30439" stop="30674"/>
              <exon start="30757" stop="30808"/>
              <exon start="30904" stop="31286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGAATCTTATGTTTTTCCAAGTTTTTACGATTATCTTAAGCATTATTATATACTGATGATTTTTAAATGTTTTTCTTTGTGATGTGAAAATTGGCAAACAACAGCCTCAGGGAGATTACATAGAGTTGCACAGGAAGAGATTTGGGCGTCGCCCTGATCACTTTGAGCGTAAACGTAAGAAGGATGCTCGTGAAGTTCACAAGCGATCCCAAATTGCCCAAAAG : GCTTTGGGTATCAAGGGTAAGATGTTTGCTAAGAAGCGTTATGCTGAGAAGGCCCAAATGAAGAAAAC : ATTGGCTATGCATGAAGAGTCATCATCCCGGCGCAAGGTTGATGATGATGTGCATGAGGGTGCTGTCCCTGCATATCTGATGGATCGTGAGACTACCACAAGAGCTAAG : ATTCTTAGCAACACAATAAAGCAAAAGAGGAAAGAGAAAGCTGGAAAATGGGAGGTGCCTCTGCCCAAG : GTTAGGCCTGTGGCTGAGGATGAGATGTTCAGAGTGATAAGATCTGGCAAAAGGAAGA : CCAAGCAGTGGAAGAGAATGGTTACGAAAGCCACCTTTGTCGGAGCAGGGTTTACCAGGAAACCTCCAAAGTATGAGCGGTTCATCCGCCCGTCTGGATTACGGTTTACTAAAGCCCACGTGACACATCCTGAACTTAAATGTACGTTCAATCTTGAGATCATTGGGGTGAAGAAGAATCCTAATGGTCCAATGTACACTTCTCTAGGTGTTATAACCAAGGGAACCATCATTGAG : GTTAATGTCAGCGAACTTGGTCTTGTCACTCCTGCTGGGAAAGTTGTATGGG : GTAAATATGCTCAAGTGACGAATAATCCTGAAAATGATGGTTGCATCAATGCAGTTCTCCTAGTGTAGTACTTTTTAACAGAGAAGAAACTGTACCCTTTTTGTTTGTGAATCGAGTGCATAATTTTGTGTATCGCTTCGGTACACTGCTTGATGCTGGTTGTGACAGAGTTGTAGAATAGGAGAGGCGAAATGAAGTAGTGATTTGTTGGAACTTGCAACTGTACCGATGATATTAGTCTTGTTATGCTGTTGGCTTCCATGTTTATTGAATTCCTTGAGGTGGAACGTAGCAAGTAGATTCATTTACCAGGAAAAATTAAGTTATTCATCAGAAATGTCCCAAAACCTTTTTATTGCTATAATCATTAAATCCTTAAGCTG</gDNA_template>
            <first_frame> H  E  S  Y  V  F  P  S  F  Y  D  Y  L  K  H  Y  Y  I  L  M  I  F  K  C  F  S  L  *  C  E  N  W  Q  T  T  A  S  G  R  L  H  R  V  A  Q  E  E  I  W  A  S  P  *  S  L  *  A  *  T  *  E  G  C  S  *  S  S  Q  A  I  P  N  C  P  K   : G  F  G  Y  Q  G  *  D  V  C  *  E  A  L  C  *  E  G  P  N  E  E  N  :  I  G  Y  A  *  R  V  I  I  P  A  Q  G  *  *  *  C  A  *  G  C  C  P  C  I  S  D  G  S  *  D  Y  H  K  S  *   : D  S  *  Q  H  N  K  A  K  E  E  R  E  S  W  K  M  G  G  A  S  A  Q   : G  *  A  C  G  *  G  *  D  V  Q  S  D  K  I  W  Q  K  E  D :   Q  A  V  E  E  N  G  Y  E  S  H  L  C  R  S  R  V  Y  Q  E  T  S  K  V  *  A  V  H  P  P  V  W  I  T  V  Y  *  S  P  R  D  T  S  *  T  *  M  Y  V  Q  S  *  D  H  W  G  E  E  E  S  *  W  S  N  V  H  F  S  R  C  Y  N  Q  G  N  H  H  *   : G  *  C  Q  R  T  W  S  C  H  S  C  W  E  S  C  M  G :   *  I  C  S  S  D  E  *  S  *  K  *  W  L  H  Q  C  S  S  P  S  V  V  L  F  N  R  E  E  T  V  P  F  L  F  V  N  R  V  H  N  F  V  Y  R  F  G  T  L  L  D  A  G  C  D  R  V  V  E  *  E  R  R  N  E  V  V  I  C  W  N  L  Q  L  Y  R  *  Y  *  S  C  Y  A  V  G  F  H  V  Y  *  I  P  *  G  G  T  *  Q  V  D  S  F  T  R  K  N  *  V  I  H  Q  K  C  P  K  T  F  L  L  L  *  S  L  N  P  *  A  </first_frame>
            <second_frame>  M  N  L  M  F  F  Q  V  F  T  I  I  L  S  I  I  I  Y  *  *  F  L  N  V  F  L  C  D  V  K  I  G  K  Q  Q  P  Q  G  D  Y  I  E  L  H  R  K  R  F  G  R  R  P  D  H  F  E  R  K  R  K  K  D  A  R  E  V  H  K  R  S  Q  I  A  Q  K  :  A  L  G  I  K  G  K  M  F  A  K  K  R  Y  A  E  K  A  Q  M  K  K  T :   L  A  M  H  E  E  S  S  S  R  R  K  V  D  D  D  V  H  E  G  A  V  P  A  Y  L  M  D  R  E  T  T  T  R  A  K  :  I  L  S  N  T  I  K  Q  K  R  K  E  K  A  G  K  W  E  V  P  L  P  K  :  V  R  P  V  A  E  D  E  M  F  R  V  I  R  S  G  K  R  K   : T  K  Q  W  K  R  M  V  T  K  A  T  F  V  G  A  G  F  T  R  K  P  P  K  Y  E  R  F  I  R  P  S  G  L  R  F  T  K  A  H  V  T  H  P  E  L  K  C  T  F  N  L  E  I  I  G  V  K  K  N  P  N  G  P  M  Y  T  S  L  G  V  I  T  K  G  T  I  I  E  :  V  N  V  S  E  L  G  L  V  T  P  A  G  K  V  V  W   : G  K  Y  A  Q  V  T  N  N  P  E  N  D  G  C  I  N  A  V  L  L  V  *  Y  F  L  T  E  K  K  L  Y  P  F  C  L  *  I  E  C  I  I  L  C  I  A  S  V  H  C  L  M  L  V  V  T  E  L  *  N  R  R  G  E  M  K  *  *  F  V  G  T  C  N  C  T  D  D  I  S  L  V  M  L  L  A  S  M  F  I  E  F  L  E  V  E  R  S  K  *  I  H  L  P  G  K  I  K  L  F  I  R  N  V  P  K  P  F  Y  C  Y  N  H  *  I  L  K  L </second_frame>
            <third_frame>   *  I  L  C  F  S  K  F  L  R  L  S  *  A  L  L  Y  T  D  D  F  *  M  F  F  F  V  M  *  K  L  A  N  N  S  L  R  E  I  T  *  S  C  T  G  R  D  L  G  V  A  L  I  T  L  S  V  N  V  R  R  M  L  V  K  F  T  S  D  P  K  L  P  K  R :   L  W  V  S  R  V  R  C  L  L  R  S  V  M  L  R  R  P  K  *  R  K   : H  W  L  C  M  K  S  H  H  P  G  A  R  L  M  M  M  C  M  R  V  L  S  L  H  I  *  W  I  V  R  L  P  Q  E  L  R :   F  L  A  T  Q  *  S  K  R  G  K  R  K  L  E  N  G  R  C  L  C  P  R :   L  G  L  W  L  R  M  R  C  S  E  *  *  D  L  A  K  G  R  :  P  S  S  G  R  E  W  L  R  K  P  P  L  S  E  Q  G  L  P  G  N  L  Q  S  M  S  G  S  S  A  R  L  D  Y  G  L  L  K  P  T  *  H  I  L  N  L  N  V  R  S  I  L  R  S  L  G  *  R  R  I  L  M  V  Q  C  T  L  L  *  V  L  *  P  R  E  P  S  L  R :   L  M  S  A  N  L  V  L  S  L  L  L  G  K  L  Y  G  :  V  N  M  L  K  *  R  I  I  L  K  M  M  V  A  S  M  Q  F  S  *  C  S  T  F  *  Q  R  R  N  C  T  L  F  V  C  E  S  S  A  *  F  C  V  S  L  R  Y  T  A  *  C  W  L  *  Q  S  C  R  I  G  E  A  K  *  S  S  D  L  L  E  L  A  T  V  P  M  I  L  V  L  L  C  C  W  L  P  C  L  L  N  S  L  R  W  N  V  A  S  R  F  I  Y  Q  E  K  L  S  Y  S  S  E  M  S  Q  N  L  F  I  A  I  I  I  K  S  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27435" stop="27599"/>
                    <exon start="27716" stop="27783"/>
                    <exon start="29478" stop="29586"/>
                    <exon start="29694" stop="29762"/>
                    <exon start="30219" stop="30276"/>
                    <exon start="30439" stop="30674"/>
                    <exon start="30757" stop="30808"/>
                    <exon start="30904" stop="30971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNVFLCDVKIGKQQPQGDYIELHRKRFGRRPDHFERKRKKDAREVHKRSQIAQKALGIKGKMFAKKRYAEKAQMKKTLAMHEESSSRRKVDDDVHEGAVPAYLMDRETTTRAKILSNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGAGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51112" PGL_stop="48905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51112" e_stop="51027"/>
            <exon e_start="50393" e_stop="50296"/>
            <exon e_start="50203" e_stop="49956"/>
            <exon e_start="49819" e_stop="49423"/>
            <exon e_start="49345" e_stop="48985"/>
            <exon e_start="48911" e_stop="48905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.982" e_score="0.907"/>
          <exon-intron don_prob="0.916" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.984" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.398" e_score="0.997"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="51112" e_stop="51027" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51026" i_stop="50394" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50393" e_stop="50296" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.986">
            <gDNA_intron_boundary i_start="50295" i_stop="50204" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50203" e_stop="49956" e_length="248"/>
          </exon>
          <intron i_serial="3" don_prob="0.869" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49955" i_stop="49820" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="49819" e_stop="49423" e_length="397"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.984">
            <gDNA_intron_boundary i_start="49422" i_stop="49346" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="49345" e_stop="48985" e_length="361"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.398">
            <gDNA_intron_boundary i_start="48984" i_stop="48912" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="48911" e_stop="48905" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51112" stop="51027"/>
              <exon start="50393" stop="50296"/>
              <exon start="50203" stop="49956"/>
              <exon start="49819" stop="49423"/>
              <exon start="49345" stop="48985"/>
              <exon start="48911" stop="48905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTAGGATGTGAGTGTGAGGGATATGGTGTGCGAATAGTAGGACATTCCCTTGGAGGAGCGATTGCTGCAGTATTGGGAATGAAG : CTACGCAAACGGTACCCAGATTTACATGTATACACATATGGTGCTCTCCCATGTGTGGGTCTGGTGGTAGCAGATGCTTGTTCTGAATTCATTACCAG : CATTGTAAACAATGATGAATTTTCAGCGCGCCTTTCAGTAGCATCAATTATGAGACTTCAAGCAGCTGCACTTAAGGCATTGTCAGAAGATGGCACTATTGATATTACAACAATTCTTAAACTTGCTCAGCACTTTACTTCATTGACCGTCTGTCAGAAAAGCATGAACGACGGAGAATCGTCAGTGAATTCTTTGACAGCAATGTCAAGTTGTACAAACCAAATCAACCATGGCCAACTTGAAAATG : GATTGGCAAAGCGTGAAGCAGGATCCTCTGTTTTGCATGACATAGATACCGATTTTAGGTGTGATGATGAAATCGTTTCAACTGAATCATCAAATCATTTCAGCAGTCCTTTCAATTGCTCCACTTCTGATTCAAGTCCATTTAGTGATCCTTTAACCGAATTTATGGAGGCTGTTCCATCTTCTGAAAATAAATCATCATTGAGTATTCCAGAGTTGTATTTACCTGGTCTTGTTATTCATATTGTGCCACAGAAGGATGGTCTTCATAAACCATTGTGGAAGCTCTGGAAAAGTTGGGAGAGAAGATGCAGGTTCAGGGCGTATGTAGCGAAAAGAGAAGCATTCAAAGATATAATAGTATCACCATACATGTTCCTGGACCATCTACCTTGGAG : ATGTCAGACTGCACTTGAAAACATACTCAAGACTGGACAACTTAAAACTCCAGATGATGCATCTGAAATTGTGTGATTCCTACACAAGCAGTGGGCTTTAGGCACCAAAAATTCAGTTACCAAAACATGACATATACGTACATAAAAGAGACAACCACATCTGATCAAGGCCATGTAAGATGTTATTAATTATGAGAGTACAAGAAACAAAATACCCCAAGTAGAGTGTTAAAAAAGTTATGTATTTATTGTTACTATTGATTAAAATTTTCTTAATAGTTTGTTGCTCATCTCTTACTAATTATTATGCACATACTTTATCAGTGATGTATGCCCTCTGTTAGTTTTAATATTATTATAT : GCAAAAA</gDNA_template>
            <first_frame> E  *  D  V  S  V  R  D  M  V  C  E  *  *  D  I  P  L  E  E  R  L  L  Q  Y  W  E  *  S :   Y  A  N  G  T  Q  I  Y  M  Y  T  H  M  V  L  S  H  V  W  V  W  W  *  Q  M  L  V  L  N  S  L  P   : A  L  *  T  M  M  N  F  Q  R  A  F  Q  *  H  Q  L  *  D  F  K  Q  L  H  L  R  H  C  Q  K  M  A  L  L  I  L  Q  Q  F  L  N  L  L  S  T  L  L  H  *  P  S  V  R  K  A  *  T  T  E  N  R  Q  *  I  L  *  Q  Q  C  Q  V  V  Q  T  K  S  T  M  A  N  L  K  M  :  D  W  Q  S  V  K  Q  D  P  L  F  C  M  T  *  I  P  I  L  G  V  M  M  K  S  F  Q  L  N  H  Q  I  I  S  A  V  L  S  I  A  P  L  L  I  Q  V  H  L  V  I  L  *  P  N  L  W  R  L  F  H  L  L  K  I  N  H  H  *  V  F  Q  S  C  I  Y  L  V  L  L  F  I  L  C  H  R  R  M  V  F  I  N  H  C  G  S  S  G  K  V  G  R  E  D  A  G  S  G  R  M  *  R  K  E  K  H  S  K  I  *  *  Y  H  H  T  C  S  W  T  I  Y  L  G   : D  V  R  L  H  L  K  T  Y  S  R  L  D  N  L  K  L  Q  M  M  H  L  K  L  C  D  S  Y  T  S  S  G  L  *  A  P  K  I  Q  L  P  K  H  D  I  Y  V  H  K  R  D  N  H  I  *  S  R  P  C  K  M  L  L  I  M  R  V  Q  E  T  K  Y  P  K  *  S  V  K  K  V  M  Y  L  L  L  L  L  I  K  I  F  L  I  V  C  C  S  S  L  T  N  Y  Y  A  H  T  L  S  V  M  Y  A  L  C  *  F  *  Y  Y  Y  M :   Q  K </first_frame>
            <second_frame>  S  R  M  *  V  *  G  I  W  C  A  N  S  R  T  F  P  W  R  S  D  C  C  S  I  G  N  E   : A  T  Q  T  V  P  R  F  T  C  I  H  I  W  C  S  P  M  C  G  S  G  G  S  R  C  L  F  *  I  H  Y  Q  :  H  C  K  Q  *  *  I  F  S  A  P  F  S  S  I  N  Y  E  T  S  S  S  C  T  *  G  I  V  R  R  W  H  Y  *  Y  Y  N  N  S  *  T  C  S  A  L  Y  F  I  D  R  L  S  E  K  H  E  R  R  R  I  V  S  E  F  F  D  S  N  V  K  L  Y  K  P  N  Q  P  W  P  T  *  K  W :   I  G  K  A  *  S  R  I  L  C  F  A  *  H  R  Y  R  F  *  V  *  *  *  N  R  F  N  *  I  I  K  S  F  Q  Q  S  F  Q  L  L  H  F  *  F  K  S  I  *  *  S  F  N  R  I  Y  G  G  C  S  I  F  *  K  *  I  I  I  E  Y  S  R  V  V  F  T  W  S  C  Y  S  Y  C  A  T  E  G  W  S  S  *  T  I  V  E  A  L  E  K  L  G  E  K  M  Q  V  Q  G  V  C  S  E  K  R  S  I  Q  R  Y  N  S  I  T  I  H  V  P  G  P  S  T  L  E  :  M  S  D  C  T  *  K  H  T  Q  D  W  T  T  *  N  S  R  *  C  I  *  N  C  V  I  P  T  Q  A  V  G  F  R  H  Q  K  F  S  Y  Q  N  M  T  Y  T  Y  I  K  E  T  T  T  S  D  Q  G  H  V  R  C  Y  *  L  *  E  Y  K  K  Q  N  T  P  S  R  V  L  K  K  L  C  I  Y  C  Y  Y  *  L  K  F  S  *  *  F  V  A  H  L  L  L  I  I  M  H  I  L  Y  Q  *  C  M  P  S  V  S  F  N  I  I  I   : C  K   </second_frame>
            <third_frame>   V  G  C  E  C  E  G  Y  G  V  R  I  V  G  H  S  L  G  G  A  I  A  A  V  L  G  M  K  :  L  R  K  R  Y  P  D  L  H  V  Y  T  Y  G  A  L  P  C  V  G  L  V  V  A  D  A  C  S  E  F  I  T  S :   I  V  N  N  D  E  F  S  A  R  L  S  V  A  S  I  M  R  L  Q  A  A  A  L  K  A  L  S  E  D  G  T  I  D  I  T  T  I  L  K  L  A  Q  H  F  T  S  L  T  V  C  Q  K  S  M  N  D  G  E  S  S  V  N  S  L  T  A  M  S  S  C  T  N  Q  I  N  H  G  Q  L  E  N   : G  L  A  K  R  E  A  G  S  S  V  L  H  D  I  D  T  D  F  R  C  D  D  E  I  V  S  T  E  S  S  N  H  F  S  S  P  F  N  C  S  T  S  D  S  S  P  F  S  D  P  L  T  E  F  M  E  A  V  P  S  S  E  N  K  S  S  L  S  I  P  E  L  Y  L  P  G  L  V  I  H  I  V  P  Q  K  D  G  L  H  K  P  L  W  K  L  W  K  S  W  E  R  R  C  R  F  R  A  Y  V  A  K  R  E  A  F  K  D  I  I  V  S  P  Y  M  F  L  D  H  L  P  W  R :   C  Q  T  A  L  E  N  I  L  K  T  G  Q  L  K  T  P  D  D  A  S  E  I  V  *  F  L  H  K  Q  W  A  L  G  T  K  N  S  V  T  K  T  *  H  I  R  T  *  K  R  Q  P  H  L  I  K  A  M  *  D  V  I  N  Y  E  S  T  R  N  K  I  P  Q  V  E  C  *  K  S  Y  V  F  I  V  T  I  D  *  N  F  L  N  S  L  L  L  I  S  Y  *  L  L  C  T  Y  F  I  S  D  V  C  P  L  L  V  L  I  L  L  Y  :  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51110" stop="51027"/>
                    <exon start="50393" stop="50296"/>
                    <exon start="50203" stop="49956"/>
                    <exon start="49819" stop="49423"/>
                    <exon start="49345" stop="49270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGCECEGYGVRIVGHSLGGAIAAVLGMKLRKRYPDLHVYTYGALPCVGLVVADACSEFITSIVNNDEFSARLSVASIMRLQAAALKALSEDGTIDITTILKLAQHFTSLTVCQKSMNDGESSVNSLTAMSSCTNQINHGQLENGLAKREAGSSVLHDIDTDFRCDDEIVSTESSNHFSSPFNCSTSDSSPFSDPLTEFMEAVPSSENKSSLSIPELYLPGLVIHIVPQKDGLHKPLWKLWKSWERRCRFRAYVAKREAFKDIIVSPYMFLDHLPWRCQTALENILKTGQLKTPDDASEIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57763" PGL_stop="52129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57763" e_stop="57687"/>
            <exon e_start="56536" e_stop="56415"/>
            <exon e_start="56341" e_stop="56250"/>
            <exon e_start="55183" e_stop="55078"/>
            <exon e_start="53186" e_stop="53032"/>
            <exon e_start="52219" e_stop="52129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57763" e_stop="57687" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.678">
            <gDNA_intron_boundary i_start="57686" i_stop="56537" i_length="1150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56536" e_stop="56415" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56414" i_stop="56342" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56341" e_stop="56250" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56249" i_stop="55184" i_length="1066"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55183" e_stop="55078" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.934">
            <gDNA_intron_boundary i_start="55077" i_stop="53187" i_length="1891"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53186" e_stop="53032" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.923">
            <gDNA_intron_boundary i_start="53031" i_stop="52220" i_length="812"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="52219" e_stop="52129" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57763" stop="57687"/>
              <exon start="56536" stop="56415"/>
              <exon start="56341" stop="56250"/>
              <exon start="55183" stop="55078"/>
              <exon start="53186" stop="53032"/>
              <exon start="52219" stop="52129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCTGTGGCACAGTTACTTGGTGATCTTGTCACTTACCGGGCATCTGGAACAGGTCATTTAGAGCTCTTGGCAG : GACTAGCTTTATTGCAGAATTCTTCTTCCTTCTCTAAATCCTATGAAGAGTCAAGGGTTGTACCCATTGAAAGGATGCGCAAGGCTGCTTTCTATCATCCATTTGCTGAAGCAGCCTACACG : GGTCTATTACTTGATATAGGAAGAAATCCTGTACTTTTTTCTTGTTCATGGCTCTATAGGCAAGGCATTCTTGCTCCCTGGCTTTGGAACAG : GCGACCTTTACTAGAAGGTGACAACTGGTGGCGAGGTCATGCAGCAGCCTTCTTGAAACATGTTCATTTGTCAGCACATATGCTCAGAAAAGGGCGTGTTAATCAA : GGGAAGTGTAAAGCAGCATACTTTATTGTGGTTTTGCATAATGTGAAATCTGTTGTAATTGCTGTGAGGGGAACTGAGACCCCCGAAGACCTCATAACTGATGGTTTAGGCAGGGAATGCTGCCTTACTGAAGAAGAATTAGATAGCCTGCTAAA : TGGCAATCATTGTGATCCATACCTTCATCAAAGAGTGGTTTCGTCCACTCCACACTATGCACACTCCGGAGTAGTTGAGGCCGCACGTGAT</gDNA_template>
            <first_frame> L  F  C  G  T  V  T  W  *  S  C  H  L  P  G  I  W  N  R  S  F  R  A  L  G  R :   T  S  F  I  A  E  F  F  F  L  L  *  I  L  *  R  V  K  G  C  T  H  *  K  D  A  Q  G  C  F  L  S  S  I  C  *  S  S  L  H   : G  S  I  T  *  Y  R  K  K  S  C  T  F  F  L  F  M  A  L  *  A  R  H  S  C  S  L  A  L  E  Q  :  A  T  F  T  R  R  *  Q  L  V  A  R  S  C  S  S  L  L  E  T  C  S  F  V  S  T  Y  A  Q  K  R  A  C  *  S   : R  E  V  *  S  S  I  L  Y  C  G  F  A  *  C  E  I  C  C  N  C  C  E  G  N  *  D  P  R  R  P  H  N  *  W  F  R  Q  G  M  L  P  Y  *  R  R  I  R  *  P  A  K  :  W  Q  S  L  *  S  I  P  S  S  K  S  G  F  V  H  S  T  L  C  T  L  R  S  S  *  G  R  T  *  </first_frame>
            <second_frame>  C  S  V  A  Q  L  L  G  D  L  V  T  Y  R  A  S  G  T  G  H  L  E  L  L  A   : G  L  A  L  L  Q  N  S  S  S  F  S  K  S  Y  E  E  S  R  V  V  P  I  E  R  M  R  K  A  A  F  Y  H  P  F  A  E  A  A  Y  T  :  G  L  L  L  D  I  G  R  N  P  V  L  F  S  C  S  W  L  Y  R  Q  G  I  L  A  P  W  L  W  N  R :   R  P  L  L  E  G  D  N  W  W  R  G  H  A  A  A  F  L  K  H  V  H  L  S  A  H  M  L  R  K  G  R  V  N  Q  :  G  K  C  K  A  A  Y  F  I  V  V  L  H  N  V  K  S  V  V  I  A  V  R  G  T  E  T  P  E  D  L  I  T  D  G  L  G  R  E  C  C  L  T  E  E  E  L  D  S  L  L  N :   G  N  H  C  D  P  Y  L  H  Q  R  V  V  S  S  T  P  H  Y  A  H  S  G  V  V  E  A  A  R  D </second_frame>
            <third_frame>   V  L  W  H  S  Y  L  V  I  L  S  L  T  G  H  L  E  Q  V  I  *  S  S  W  Q  :  D  *  L  Y  C  R  I  L  L  P  S  L  N  P  M  K  S  Q  G  L  Y  P  L  K  G  C  A  R  L  L  S  I  I  H  L  L  K  Q  P  T  R :   V  Y  Y  L  I  *  E  E  I  L  Y  F  F  L  V  H  G  S  I  G  K  A  F  L  L  P  G  F  G  T   : G  D  L  Y  *  K  V  T  T  G  G  E  V  M  Q  Q  P  S  *  N  M  F  I  C  Q  H  I  C  S  E  K  G  V  L  I  K :   G  S  V  K  Q  H  T  L  L  W  F  C  I  M  *  N  L  L  *  L  L  *  G  E  L  R  P  P  K  T  S  *  L  M  V  *  A  G  N  A  A  L  L  K  K  N  *  I  A  C  *   : M  A  I  I  V  I  H  T  F  I  K  E  W  F  R  P  L  H  T  M  H  T  P  E  *  L  R  P  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57762" stop="57687"/>
                    <exon start="56536" stop="56415"/>
                    <exon start="56341" stop="56250"/>
                    <exon start="55183" stop="55078"/>
                    <exon start="53186" stop="53032"/>
                    <exon start="52219" stop="52129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVAQLLGDLVTYRASGTGHLELLAGLALLQNSSSFSKSYEESRVVPIERMRKAAFYHPFAEAAYTGLLLDIGRNPVLFSCSWLYRQGILAPWLWNRRPLLEGDNWWRGHAAAFLKHVHLSAHMLRKGRVNQGKCKAAYFIVVLHNVKSVVIAVRGTETPEDLITDGLGRECCLTEEELDSLLNGNHCDPYLHQRVVSSTPHYAHSGVVEAARD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="67416" PGL_stop="66622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67416" e_stop="66622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="67416" e_stop="66622" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67416" stop="66676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67357" stop="66622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGCCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGAGGAAAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> R  F  D  K  G  A  T  S  R  T  Q  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  P  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  F  D  L  P  I  W  S  S  R  I  H  H  H  *  *  R  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  P  P  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  *  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  G  K  E  D  G  C  C  L  P  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  E  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  *  G  C  H  L  T  N  S  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  A  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  S  T  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  L  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  R  K  R  G  W  L  L  F  A  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67415" stop="66624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIEEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73502" PGL_stop="74036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73502" e_stop="74036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="73502" e_stop="74036" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73502" stop="74036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGTATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGGGCCACCACAACATCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTCTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATCGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAACATCGCACATAAAACAGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCATGAATAAGGACGGATATATATTTTGAACAAATAGGAATTTGTTTGTTTGGAGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  N  I  S  T  K  S  R  W  R  R  I  L  S  P  L  Y  F  N  F  H  F  S  N  L  L  H  Q  L  H  D  Q  F  V  L  F  H  Y  S  G  L  G  H  H  N  I  S  K  T  P  F  V  I  V  V  S  H  N  C  L  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  R  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  H  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  M  N  K  D  G  Y  I  F  *  T  N  R  N  L  F  V  W  S  Y  L  G  K  S  </first_frame>
            <second_frame>  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  I  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  W  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  R  F  V  *  G  Y  L  N  P  *  I  R  T  D  I  Y  F  E  Q  I  G  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  V  F  Q  L  S  F  Q  Q  S  V  A  S  A  A  *  S  I  R  S  V  P  L  Q  W  A  G  P  P  Q  H  Q  *  D  A  L  R  H  C  C  L  P  *  L  S  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  S  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  T  S  H  I  K  Q  I  N  T  Q  V  V  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  L  N  K  *  E  F  V  C  L  E  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73545" stop="73802"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGGLASAILVPNPGGGASCLRCISTFISAICCISCMINSFCSTTVGWATTTSVRRPSSLLSPITVFPLSEFDRGKESVGPFDLVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73535" stop="73753"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISNISTKSRWRRILSPLYFNFHFSNLLHQLHDQFVLFHYSGLGHHNISKTPFVIVVSHNCLSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="74340" PGL_stop="74725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74340" e_stop="74725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="74340" e_stop="74725" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74340" stop="74725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGCCGGGGCCACTGTTATCTGCTCCCCGATCACGGGCGAGGTATTTTCCGCTCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGCTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCCTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCACGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> Q  K  W  R  L  V  D  Y  F  F  F  I  I  L  L  S  H  F  T  A  G  A  T  V  I  C  S  P  I  T  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  A  S  V  Q  Q  H  S  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  R  Q  I  F  I  Q  C  C  D  R  S  F  V  D  R  R  G  H  V  Y  F  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  R  N  G  G  L  *  T  I  S  S  S  S  S  S  S  V  T  S  R  P  G  P  L  L  S  A  P  R  S  R  A  R  Y  F  P  L  F  G  S  L  W  V  A  N  S  S  S  S  A  A  L  L  S  N  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  P  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  N  V  V  T  A  A  L  *  I  A  V  V  T  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  L  L  H  H  P  P  Q  S  L  H  G  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  S  L  G  R  Y  G  S  P  I  P  R  R  A  P  R  F  C  P  T  T  Q  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  L  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  T  P  D  L  H  P  M  L  *  P  Q  L  C  R  S  P  W  S  R  L  L  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74342" stop="74659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFLLHHPPQSLHGRGHCYLLPDHGRGIFRSLGRYGSPIPRRAPRFCPTTQQSRYLSSPLSPFLRVSPNEASSTLSLGFRFPSQPPSFSLSVTPDLHPML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74359" stop="74673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISSSSSSSVTSRPGPLLSAPRSRARYFPLFGSLWVANSSSSAALLSNNTAVSISIFASLAFPSCISKRSKFNPFLRLSVSISTSFFLFICDARSSSNVVTAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74340" stop="74588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKWRLVDYFFFIILLSHFTAGATVICSPITGEVFSALWVAMGRQFLVERRASVQQHSSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78671" PGL_stop="77972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78671" e_stop="77972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="78671" e_stop="77972" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78671" stop="77972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTATCCCCCTCTAACTCATTTCTCCAAGTAGTTCATCTTTTATCTTCGTCTTGTTCAAGACACTTTCTATTAGTTTATCGCTTTAAGTGCTAATCTTTTGTATGTTTTATTGCATGTGAAACCCTCCTCGAGTCCTCATGGACTTTATTCCATCTCACTACACTTCCTCATCGAGCCATAAAGGCTCAGAATGTCTTCTTCGAGTCATAGAACCCTCTCAAAGGTGTACAGGTCGGAAGAACAGCAGAAAATGCACTGCTGGAGATTGATTCTGGTTCACCAGAACTTGGAAAATTGCTGGAAATTACAGTGGCATATATTGAGAAGCTGTATACCAACCATATACACAGTTTATACCGTGATATACATATCAAAAGATGTACAGGAGGCCTAGTTCGAAACCTGGGTTGATGGCAGTAAAGTAAGCTGCTGAAAAGAATTTTTCAACTCTCGAAAGTTGAAAAACAGGCTGATATACAGCCTGTATACACTGATATACAGAAACGTTATACCTTAAATAGGTGTAAAAATATGAATGGCAGCAGGCGTGCGAAAATTCGAACTTCATGAAGATCGAAGGTGCTCAAGGAAGGAGTATTAGAAGATTTTTTTATTATTATTTATTTATAAAGTTGTATTTATTTTGGGTATAAGCCCTTGTCATTTTTACTTTCCGTATATTTATTCTTGTATGTT</gDNA_template>
            <first_frame> S  F  I  P  L  *  L  I  S  P  S  S  S  S  F  I  F  V  L  F  K  T  L  S  I  S  L  S  L  *  V  L  I  F  C  M  F  Y  C  M  *  N  P  P  R  V  L  M  D  F  I  P  S  H  Y  T  S  S  S  S  H  K  G  S  E  C  L  L  R  V  I  E  P  S  Q  R  C  T  G  R  K  N  S  R  K  C  T  A  G  D  *  F  W  F  T  R  T  W  K  I  A  G  N  Y  S  G  I  Y  *  E  A  V  Y  Q  P  Y  T  Q  F  I  P  *  Y  T  Y  Q  K  M  Y  R  R  P  S  S  K  P  G  L  M  A  V  K  *  A  A  E  K  N  F  S  T  L  E  S  *  K  T  G  *  Y  T  A  C  I  H  *  Y  T  E  T  L  Y  L  K  *  V  *  K  Y  E  W  Q  Q  A  C  E  N  S  N  F  M  K  I  E  G  A  Q  G  R  S  I  R  R  F  F  Y  Y  Y  L  F  I  K  L  Y  L  F  W  V  *  A  L  V  I  F  T  F  R  I  F  I  L  V  C  </first_frame>
            <second_frame>  H  L  S  P  S  N  S  F  L  Q  V  V  H  L  L  S  S  S  C  S  R  H  F  L  L  V  Y  R  F  K  C  *  S  F  V  C  F  I  A  C  E  T  L  L  E  S  S  W  T  L  F  H  L  T  T  L  P  H  R  A  I  K  A  Q  N  V  F  F  E  S  *  N  P  L  K  G  V  Q  V  G  R  T  A  E  N  A  L  L  E  I  D  S  G  S  P  E  L  G  K  L  L  E  I  T  V  A  Y  I  E  K  L  Y  T  N  H  I  H  S  L  Y  R  D  I  H  I  K  R  C  T  G  G  L  V  R  N  L  G  *  W  Q  *  S  K  L  L  K  R  I  F  Q  L  S  K  V  E  K  Q  A  D  I  Q  P  V  Y  T  D  I  Q  K  R  Y  T  L  N  R  C  K  N  M  N  G  S  R  R  A  K  I  R  T  S  *  R  S  K  V  L  K  E  G  V  L  E  D  F  F  I  I  I  Y  L  *  S  C  I  Y  F  G  Y  K  P  L  S  F  L  L  S  V  Y  L  F  L  Y  V </second_frame>
            <third_frame>   I  Y  P  P  L  T  H  F  S  K  *  F  I  F  Y  L  R  L  V  Q  D  T  F  Y  *  F  I  A  L  S  A  N  L  L  Y  V  L  L  H  V  K  P  S  S  S  P  H  G  L  Y  S  I  S  L  H  F  L  I  E  P  *  R  L  R  M  S  S  S  S  H  R  T  L  S  K  V  Y  R  S  E  E  Q  Q  K  M  H  C  W  R  L  I  L  V  H  Q  N  L  E  N  C  W  K  L  Q  W  H  I  L  R  S  C  I  P  T  I  Y  T  V  Y  T  V  I  Y  I  S  K  D  V  Q  E  A  *  F  E  T  W  V  D  G  S  K  V  S  C  *  K  E  F  F  N  S  R  K  L  K  N  R  L  I  Y  S  L  Y  T  L  I  Y  R  N  V  I  P  *  I  G  V  K  I  *  M  A  A  G  V  R  K  F  E  L  H  E  D  R  R  C  S  R  K  E  Y  *  K  I  F  L  L  L  F  I  Y  K  V  V  F  I  L  G  I  S  P  C  H  F  Y  F  P  Y  I  Y  S  C  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78486" stop="78274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRMSSSSHRTLSKVYRSEEQQKMHCWRLILVHQNLENCWKLQWHILRSCIPTIYTVYTVIYISKDVQEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78457" stop="78257"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPLKGVQVGRTAENALLEIDSGSPELGKLLEITVAYIEKLYTNHIHSLYRDIHIKRCTGGLVRNLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77980" PGL_stop="78735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77980" e_stop="78735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="77980" e_stop="78735" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77980" stop="78735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATAAATATACGGAAAGTAAAAATGACAAGGGCTTATACCCAAAATAAATACAACTTTATAAATAAATAATAATAAAAAAATCTTCTAATACTCCTTCCTTGAGCACCTTCGATCTTCATGAAGTTCGAATTTTCGCACGCCTGCTGCCATTCATATTTTTACACCTATTTAAGGTATAACGTTTCTGTATATCAGTGTATACAGGCTGTATATCAGCCTGTTTTTCAACTTTCGAGAGTTGAAAAATTCTTTTCAGCAGCTTACTTTACTGCCATCAACCCAGGTTTCGAACTAGGCCTCCTGTACATCTTTTGATATGTATATCACGGTATAAACTGTGTATATGGTTGGTATACAGCTTCTCAATATATGCCACTGTAATTTCCAGCAATTTTCCAAGTTCTGGTGAACCAGAATCAATCTCCAGCAGTGCATTTTCTGCTGTTCTTCCGACCTGTACACCTTTGAGAGGGTTCTATGACTCGAAGAAGACATTCTGAGCCTTTATGGCTCGATGAGGAAGTGTAGTGAGATGGAATAAAGTCCATGAGGACTCGAGGAGGGTTTCACATGCAATAAAACATACAAAAGATTAGCACTTAAAGCGATAAACTAATAGAAAGTGTCTTGAACAAGACGAAGATAAAAGATGAACTACTTGGAGAAATGAGTTAGAGGGGGATAAATGACTTCAAAAATAATTCCGAATGATATTAAGAAATAAAATCTCACAACAAGTAGGATAAATAACAG</gDNA_template>
            <first_frame> R  I  N  I  R  K  V  K  M  T  R  A  Y  T  Q  N  K  Y  N  F  I  N  K  *  *  *  K  N  L  L  I  L  L  P  *  A  P  S  I  F  M  K  F  E  F  S  H  A  C  C  H  S  Y  F  Y  T  Y  L  R  Y  N  V  S  V  Y  Q  C  I  Q  A  V  Y  Q  P  V  F  Q  L  S  R  V  E  K  F  F  S  A  A  Y  F  T  A  I  N  P  G  F  E  L  G  L  L  Y  I  F  *  Y  V  Y  H  G  I  N  C  V  Y  G  W  Y  T  A  S  Q  Y  M  P  L  *  F  P  A  I  F  Q  V  L  V  N  Q  N  Q  S  P  A  V  H  F  L  L  F  F  R  P  V  H  L  *  E  G  S  M  T  R  R  R  H  S  E  P  L  W  L  D  E  E  V  *  *  D  G  I  K  S  M  R  T  R  G  G  F  H  M  Q  *  N  I  Q  K  I  S  T  *  S  D  K  L  I  E  S  V  L  N  K  T  K  I  K  D  E  L  L  G  E  M  S  *  R  G  I  N  D  F  K  N  N  S  E  *  Y  *  E  I  K  S  H  N  K  *  D  K  *  Q </first_frame>
            <second_frame>  E  *  I  Y  G  K  *  K  *  Q  G  L  I  P  K  I  N  T  T  L  *  I  N  N  N  K  K  I  F  *  Y  S  F  L  E  H  L  R  S  S  *  S  S  N  F  R  T  P  A  A  I  H  I  F  T  P  I  *  G  I  T  F  L  Y  I  S  V  Y  R  L  Y  I  S  L  F  F  N  F  R  E  L  K  N  S  F  Q  Q  L  T  L  L  P  S  T  Q  V  S  N  *  A  S  C  T  S  F  D  M  Y  I  T  V  *  T  V  Y  M  V  G  I  Q  L  L  N  I  C  H  C  N  F  Q  Q  F  S  K  F  W  *  T  R  I  N  L  Q  Q  C  I  F  C  C  S  S  D  L  Y  T  F  E  R  V  L  *  L  E  E  D  I  L  S  L  Y  G  S  M  R  K  C  S  E  M  E  *  S  P  *  G  L  E  E  G  F  T  C  N  K  T  Y  K  R  L  A  L  K  A  I  N  *  *  K  V  S  *  T  R  R  R  *  K  M  N  Y  L  E  K  *  V  R  G  G  *  M  T  S  K  I  I  P  N  D  I  K  K  *  N  L  T  T  S  R  I  N  N   </second_frame>
            <third_frame>   N  K  Y  T  E  S  K  N  D  K  G  L  Y  P  K  *  I  Q  L  Y  K  *  I  I  I  K  K  S  S  N  T  P  S  L  S  T  F  D  L  H  E  V  R  I  F  A  R  L  L  P  F  I  F  L  H  L  F  K  V  *  R  F  C  I  S  V  Y  T  G  C  I  S  A  C  F  S  T  F  E  S  *  K  I  L  F  S  S  L  L  Y  C  H  Q  P  R  F  R  T  R  P  P  V  H  L  L  I  C  I  S  R  Y  K  L  C  I  W  L  V  Y  S  F  S  I  Y  A  T  V  I  S  S  N  F  P  S  S  G  E  P  E  S  I  S  S  S  A  F  S  A  V  L  P  T  C  T  P  L  R  G  F  Y  D  S  K  K  T  F  *  A  F  M  A  R  *  G  S  V  V  R  W  N  K  V  H  E  D  S  R  R  V  S  H  A  I  K  H  T  K  D  *  H  L  K  R  *  T  N  R  K  C  L  E  Q  D  E  D  K  R  *  T  T  W  R  N  E  L  E  G  D  K  *  L  Q  K  *  F  R  M  I  L  R  N  K  I  S  Q  Q  V  G  *  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78225" stop="78482"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KILFSSLLYCHQPRFRTRPPVHLLICISRYKLCIWLVYSFSIYATVISSNFPSSGEPESISSSAFSAVLPTCTPLRGFYDSKKTF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78085" stop="78297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSIFMKFEFSHACCHSYFYTYLRYNVSVYQCIQAVYQPVFQLSRVEKFFSAAYFTAINPGFELGLLYIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79796" PGL_stop="78676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79796" e_stop="78676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79796" e_stop="78676" e_length="1121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79796" stop="79318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79342" stop="78676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACATTGGGGATTTGATTTTAAGGTTGGAATTTTGTTGAAATTTGAGAGAGAAAAATCTGGAAGAGTGTTGGGAGTTAGAAATTTGGTTGGACGATTGAGCGAAAAATTGAAGAGAGGGAAAGAGTCGCGCAACTCAGGAGACTGAAGTCACGATCCTGTTCCCTTTGCTCGTCGGGTCGTTTTCAATACAGCTTTGAGCTCATTTGGTGGTGGAAGCTCGTTACCTCACTCGTCGTTGCCGTTTGCTGCATAAAAAGGGGTGAGAATCGACCCTTATTTTGTTTATGACTCGTTTTTTTCGCTCGATTGTTGCTTGTATGTGGTTGGCTGACATTTGGTTGTGACTCGAAGTCTGTCATTGCGTATTGCCTTTCTTCTATAGTTTTGCTGTTAGTTTGGTTGTAGTCCGAGTCGACGTTTTCCAGTTTTGGGAGTATGGGGTGCAAATTTTGTATAGTCTGCGTCTGAAATGTCTTCGATAAACAGTTGCATTTCTCCCTTTGATCGTAATCGTCTTCTCAAGTTTTCCTCGTCTTTTCAACTTAGCATGTTGTTTCGATCGCGAAGTCGCTACCTTTGATTGTGTTGTTGTTGTTGTTCTCGCTTTTCGTTTCATGGCTGCTGAAGGAGTCTGTTCAACTTTTCCAAATGTGATGTATTCTTGTGTGTTTGTTGAAATGCGAATGAGGTTCTTTCTCATCTCCCAATAGTTTGTGATAGTCGAATTTATTTCGGAATGTTTTAAGGTTGAGTTTTAGTTCATTTTTTTCCAGCTAAAGGCATGGTTGTTCATGGCGGTGTTCTCCGTTAGAAAATTTCATGAACGCACAGTCCTTCCATATGCTTCTCTCTTTGCATTCCACATGTATGTTTTGTGTTTATGTGTGATACGGTAATTTGGAAATAAGTATTTTTCGTATTTAGCATCATCATGTCTTGCCAATTGGATATGCTGTACCAATGAAGTATGGCATGTTTACTTTGCATTTACTAAACAGCAGTAGTGCATCCTCATGCAGATGACAAATTCATTAATATGTGTACATGCATTGCTTGCCCCTGTTATTTATCCTACTTGTTGTGAGATTTTATTTCTTAATATCATTCGGAATTATTTTT</gDNA_template>
            <first_frame> K  H  W  G  F  D  F  K  V  G  I  L  L  K  F  E  R  E  K  S  G  R  V  L  G  V  R  N  L  V  G  R  L  S  E  K  L  K  R  G  K  E  S  R  N  S  G  D  *  S  H  D  P  V  P  F  A  R  R  V  V  F  N  T  A  L  S  S  F  G  G  G  S  S  L  P  H  S  S  L  P  F  A  A  *  K  G  V  R  I  D  P  Y  F  V  Y  D  S  F  F  S  L  D  C  C  L  Y  V  V  G  *  H  L  V  V  T  R  S  L  S  L  R  I  A  F  L  L  *  F  C  C  *  F  G  C  S  P  S  R  R  F  P  V  L  G  V  W  G  A  N  F  V  *  S  A  S  E  M  S  S  I  N  S  C  I  S  P  F  D  R  N  R  L  L  K  F  S  S  S  F  Q  L  S  M  L  F  R  S  R  S  R  Y  L  *  L  C  C  C  C  C  S  R  F  S  F  H  G  C  *  R  S  L  F  N  F  S  K  C  D  V  F  L  C  V  C  *  N  A  N  E  V  L  S  H  L  P  I  V  C  D  S  R  I  Y  F  G  M  F  *  G  *  V  L  V  H  F  F  P  A  K  G  M  V  V  H  G  G  V  L  R  *  K  I  S  *  T  H  S  P  S  I  C  F  S  L  C  I  P  H  V  C  F  V  F  M  C  D  T  V  I  W  K  *  V  F  F  V  F  S  I  I  M  S  C  Q  L  D  M  L  Y  Q  *  S  M  A  C  L  L  C  I  Y  *  T  A  V  V  H  P  H  A  D  D  K  F  I  N  M  C  T  C  I  A  C  P  C  Y  L  S  Y  L  L  *  D  F  I  S  *  Y  H  S  E  L  F   </first_frame>
            <second_frame>  N  I  G  D  L  I  L  R  L  E  F  C  *  N  L  R  E  K  N  L  E  E  C  W  E  L  E  I  W  L  D  D  *  A  K  N  *  R  E  G  K  S  R  A  T  Q  E  T  E  V  T  I  L  F  P  L  L  V  G  S  F  S  I  Q  L  *  A  H  L  V  V  E  A  R  Y  L  T  R  R  C  R  L  L  H  K  K  G  *  E  S  T  L  I  L  F  M  T  R  F  F  R  S  I  V  A  C  M  W  L  A  D  I  W  L  *  L  E  V  C  H  C  V  L  P  F  F  Y  S  F  A  V  S  L  V  V  V  R  V  D  V  F  Q  F  W  E  Y  G  V  Q  I  L  Y  S  L  R  L  K  C  L  R  *  T  V  A  F  L  P  L  I  V  I  V  F  S  S  F  P  R  L  F  N  L  A  C  C  F  D  R  E  V  A  T  F  D  C  V  V  V  V  V  L  A  F  R  F  M  A  A  E  G  V  C  S  T  F  P  N  V  M  Y  S  C  V  F  V  E  M  R  M  R  F  F  L  I  S  Q  *  F  V  I  V  E  F  I  S  E  C  F  K  V  E  F  *  F  I  F  F  Q  L  K  A  W  L  F  M  A  V  F  S  V  R  K  F  H  E  R  T  V  L  P  Y  A  S  L  F  A  F  H  M  Y  V  L  C  L  C  V  I  R  *  F  G  N  K  Y  F  S  Y  L  A  S  S  C  L  A  N  W  I  C  C  T  N  E  V  W  H  V  Y  F  A  F  T  K  Q  Q  *  C  I  L  M  Q  M  T  N  S  L  I  C  V  H  A  L  L  A  P  V  I  Y  P  T  C  C  E  I  L  F  L  N  I  I  R  N  Y  F  </second_frame>
            <third_frame>   T  L  G  I  *  F  *  G  W  N  F  V  E  I  *  E  R  K  I  W  K  S  V  G  S  *  K  F  G  W  T  I  E  R  K  I  E  E  R  E  R  V  A  Q  L  R  R  L  K  S  R  S  C  S  L  C  S  S  G  R  F  Q  Y  S  F  E  L  I  W  W  W  K  L  V  T  S  L  V  V  A  V  C  C  I  K  R  G  E  N  R  P  L  F  C  L  *  L  V  F  F  A  R  L  L  L  V  C  G  W  L  T  F  G  C  D  S  K  S  V  I  A  Y  C  L  S  S  I  V  L  L  L  V  W  L  *  S  E  S  T  F  S  S  F  G  S  M  G  C  K  F  C  I  V  C  V  *  N  V  F  D  K  Q  L  H  F  S  L  *  S  *  S  S  S  Q  V  F  L  V  F  S  T  *  H  V  V  S  I  A  K  S  L  P  L  I  V  L  L  L  L  F  S  L  F  V  S  W  L  L  K  E  S  V  Q  L  F  Q  M  *  C  I  L  V  C  L  L  K  C  E  *  G  S  F  S  S  P  N  S  L  *  *  S  N  L  F  R  N  V  L  R  L  S  F  S  S  F  F  S  S  *  R  H  G  C  S  W  R  C  S  P  L  E  N  F  M  N  A  Q  S  F  H  M  L  L  S  L  H  S  T  C  M  F  C  V  Y  V  *  Y  G  N  L  E  I  S  I  F  R  I  *  H  H  H  V  L  P  I  G  Y  A  V  P  M  K  Y  G  M  F  T  L  H  L  L  N  S  S  S  A  S  S  C  R  *  Q  I  H  *  Y  V  Y  M  H  C  L  P  L  L  F  I  L  L  V  V  R  F  Y  F  L  I  S  F  G  I  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79312" stop="79085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVAFLPLIVIVFSSFPRLFNLACCFDREVATFDCVVVVVLAFRFMAAEGVCSTFPNVMYSCVFVEMRMRFFLISQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79716" stop="79507"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFGWTIERKIEERERVAQLRRLKSRSCSLCSSGRFQYSFELIWWWKLVTSLVVAVCCIKRGENRPLFCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="83587" PGL_stop="84056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83587" e_stop="84056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83587" e_stop="84056" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83587" stop="84056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTTGCAATAGTCGCTGGAATTGGACCTTCAAGCATATTGTTGCCGAGTGAGATCCCCATTAATGTTTTTGACTCCCATAGTTGATCTGGTACCATCCCAGAGAATTGGTTTTTCGATAGCTCAAGAGTAATAAGCTGAAGCTCCCCAAGATAAGAAGGCAGTTTACCTGAGAGATTGTTTCCAGACAACACCAAGTCTGTGAGGCTTGAACAGTTCGCGAAAGTACTTTGGATGTCACCAGTGAAGTTGTTATCCGACAACACCAGCACGCTCAATGATTTGGCACCACATATCTCTGAAGACAACTCACCAGATAGACTGTTAGCACTGACATCAAGAACAGATAGCAAAGGGAGATACAGTGGTGGGAGAGGTCCACTTAGGAAGTTCTTTGACACCATTATTGACTCTACTTGCGTCCAGTTGGAAATCCACATAGGCAGGGGGCCTGATAAGCCGTTTGAAT</gDNA_template>
            <first_frame> K  F  C  N  S  R  W  N  W  T  F  K  H  I  V  A  E  *  D  P  H  *  C  F  *  L  P  *  L  I  W  Y  H  P  R  E  L  V  F  R  *  L  K  S  N  K  L  K  L  P  K  I  R  R  Q  F  T  *  E  I  V  S  R  Q  H  Q  V  C  E  A  *  T  V  R  E  S  T  L  D  V  T  S  E  V  V  I  R  Q  H  Q  H  A  Q  *  F  G  T  T  Y  L  *  R  Q  L  T  R  *  T  V  S  T  D  I  K  N  R  *  Q  R  E  I  Q  W  W  E  R  S  T  *  E  V  L  *  H  H  Y  *  L  Y  L  R  P  V  G  N  P  H  R  Q  G  A  *  *  A  V  *   </first_frame>
            <second_frame>  S  F  A  I  V  A  G  I  G  P  S  S  I  L  L  P  S  E  I  P  I  N  V  F  D  S  H  S  *  S  G  T  I  P  E  N  W  F  F  D  S  S  R  V  I  S  *  S  S  P  R  *  E  G  S  L  P  E  R  L  F  P  D  N  T  K  S  V  R  L  E  Q  F  A  K  V  L  W  M  S  P  V  K  L  L  S  D  N  T  S  T  L  N  D  L  A  P  H  I  S  E  D  N  S  P  D  R  L  L  A  L  T  S  R  T  D  S  K  G  R  Y  S  G  G  R  G  P  L  R  K  F  F  D  T  I  I  D  S  T  C  V  Q  L  E  I  H  I  G  R  G  P  D  K  P  F  E  </second_frame>
            <third_frame>   V  L  Q  *  S  L  E  L  D  L  Q  A  Y  C  C  R  V  R  S  P  L  M  F  L  T  P  I  V  D  L  V  P  S  Q  R  I  G  F  S  I  A  Q  E  *  *  A  E  A  P  Q  D  K  K  A  V  Y  L  R  D  C  F  Q  T  T  P  S  L  *  G  L  N  S  S  R  K  Y  F  G  C  H  Q  *  S  C  Y  P  T  T  P  A  R  S  M  I  W  H  H  I  S  L  K  T  T  H  Q  I  D  C  *  H  *  H  Q  E  Q  I  A  K  G  D  T  V  V  G  E  V  H  L  G  S  S  L  T  P  L  L  T  L  L  A  S  S  W  K  S  T  *  A  G  G  L  I  S  R  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83744" stop="84055"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSLPERLFPDNTKSVRLEQFAKVLWMSPVKLLSDNTSTLNDLAPHISEDNSPDRLLALTSRTDSKGRYSGGRGPLRKFFDTIIDSTCVQLEIHIGRGPDKPFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86781" PGL_stop="87303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86781" e_stop="87303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="86781" e_stop="87303" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86781" stop="87303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGTCCTTGTAAGATGAATGTGCCAAAGCCTTTGGTTCTTGATCCTTATGCTTATGGAAACCAGAGCCGGGGAGGTCAAAACGGGGATGATGGAGCTTCAAGAAGCAATAACAAAAGTTTCAAGAACCATAGATTCCTCAGTGTTTCATCCATTGTTGCAATCTCTGCTGCAGCTGTGATCGCGGTTGGAGTAATGATAATAACCTTACTCAATGCTTCTGTTCGAAGGAGGATCACGTTCGTTGACAACGCCTTGGAGAGTATGTGCTCAAGTTCTTCTAAATCAGGGACCCTAGCCACTGGAAAACTTGTGTTATTGGACACCAAATCTTCCCCGGATTGGACTAATAGCAGTCTTGAATCAATCCTAGACAAGGCATCTCAAATCGGTGAAGGTGTCTTTGGGACTGTTTACAAAGCCCCATTGGGAGGGGAAGGAAGAATAGTAGCTGTCAAGAAGCTTGTAACATCAAAAATCCTCCAATATCCTGAGGACTTCGATAGAGAAGTTAGAGTTTTAGC</gDNA_template>
            <first_frame> K  V  L  V  R  *  M  C  Q  S  L  W  F  L  I  L  M  L  M  E  T  R  A  G  E  V  K  T  G  M  M  E  L  Q  E  A  I  T  K  V  S  R  T  I  D  S  S  V  F  H  P  L  L  Q  S  L  L  Q  L  *  S  R  L  E  *  *  *  *  P  Y  S  M  L  L  F  E  G  G  S  R  S  L  T  T  P  W  R  V  C  A  Q  V  L  L  N  Q  G  P  *  P  L  E  N  L  C  Y  W  T  P  N  L  P  R  I  G  L  I  A  V  L  N  Q  S  *  T  R  H  L  K  S  V  K  V  S  L  G  L  F  T  K  P  H  W  E  G  K  E  E  *  *  L  S  R  S  L  *  H  Q  K  S  S  N  I  L  R  T  S  I  E  K  L  E  F  *  </first_frame>
            <second_frame>  R  S  L  *  D  E  C  A  K  A  F  G  S  *  S  L  C  L  W  K  P  E  P  G  R  S  K  R  G  *  W  S  F  K  K  Q  *  Q  K  F  Q  E  P  *  I  P  Q  C  F  I  H  C  C  N  L  C  C  S  C  D  R  G  W  S  N  D  N  N  L  T  Q  C  F  C  S  K  E  D  H  V  R  *  Q  R  L  G  E  Y  V  L  K  F  F  *  I  R  D  P  S  H  W  K  T  C  V  I  G  H  Q  I  F  P  G  L  D  *  *  Q  S  *  I  N  P  R  Q  G  I  S  N  R  *  R  C  L  W  D  C  L  Q  S  P  I  G  R  G  R  K  N  S  S  C  Q  E  A  C  N  I  K  N  P  P  I  S  *  G  L  R  *  R  S  *  S  F  S </second_frame>
            <third_frame>   G  P  C  K  M  N  V  P  K  P  L  V  L  D  P  Y  A  Y  G  N  Q  S  R  G  G  Q  N  G  D  D  G  A  S  R  S  N  N  K  S  F  K  N  H  R  F  L  S  V  S  S  I  V  A  I  S  A  A  A  V  I  A  V  G  V  M  I  I  T  L  L  N  A  S  V  R  R  R  I  T  F  V  D  N  A  L  E  S  M  C  S  S  S  S  K  S  G  T  L  A  T  G  K  L  V  L  L  D  T  K  S  S  P  D  W  T  N  S  S  L  E  S  I  L  D  K  A  S  Q  I  G  E  G  V  F  G  T  V  Y  K  A  P  L  G  G  E  G  R  I  V  A  V  K  K  L  V  T  S  K  I  L  Q  Y  P  E  D  F  D  R  E  V  R  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86783" stop="87301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPCKMNVPKPLVLDPYAYGNQSRGGQNGDDGASRSNNKSFKNHRFLSVSSIVAISAAAVIAVGVMIITLLNASVRRRITFVDNALESMCSSSSKSGTLATGKLVLLDTKSSPDWTNSSLESILDKASQIGEGVFGTVYKAPLGGEGRIVAVKKLVTSKILQYPEDFDREVRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87799" PGL_stop="88173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87799" e_stop="88173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87799" e_stop="88173" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87799" stop="88173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</gDNA_template>
            <first_frame> D  T  Q  *  S  C  E  S  F  A  *  A  R  Q  C  V  G  V  C  *  S  N  Y  E  Y  L  S  *  R  G  S  F  A  C  S  E  V  G  I  G  V  H  F  S  N  T  I  K  *  A  F  N  G  *  S  G  S  N  L  A  G  H  Q  N  T  C  S  S  K  N  G  S  I  L  K  L  V  T  N  L  M  N  F  P  F  S  L  T  F  Y  H  I  L  L  L  L  S  *  P  P  N  L  M  F  L  D  *  I  V  I  E  R  V  L  Y  F  S  V  I  *  *  N  I  *  E </first_frame>
            <second_frame>  I  L  N  D  H  V  R  V  L  L  E  Q  G  N  V  L  E  C  V  D  P  T  M  N  T  Y  P  E  E  E  V  L  P  V  L  K  L  A  L  V  C  T  S  Q  I  P  S  S  R  P  S  M  A  E  V  V  Q  I  L  Q  V  I  K  T  P  V  P  Q  R  M  E  V  Y  *  N  L  L  Q  T  *  *  I  S  L  S  L  *  L  S  I  I  S  Y  C  C  Y  L  N  L  L  I  *  C  F  W  T  R  *  *  *  R  E  F  C  T  S  L  S  F  D  E  I  Y  E   </second_frame>
            <third_frame>   Y  S  M  I  M  *  E  F  C  L  S  K  A  M  C  W  S  V  L  I  Q  L  *  I  L  I  L  K  R  K  F  C  L  F  *  S  W  H  W  C  A  L  L  K  Y  H  Q  V  G  L  Q  W  L  K  W  F  K  S  C  R  S  S  K  H  L  F  L  K  E  W  K  Y  T  K  T  C  Y  K  L  D  E  F  P  F  L  F  D  F  L  S  Y  P  I  V  V  I  L  T  S  *  S  D  V  F  G  L  D  S  D  R  E  S  F  V  L  L  C  H  L  M  K  Y  M  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87800" stop="88021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNDHVRVLLEQGNVLECVDPTMNTYPEEEVLPVLKLALVCTSQIPSSRPSMAEVVQILQVIKTPVPQRMEVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0017K18.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87906" stop="88100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWHWCALLKYHQVGLQWLKWFKSCRSSKHLFLKEWKYTKTCYKLDEFPFLFDFLSYPIVVILTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 56840 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2991 bytes was the average size of a spliced alignment
$ 23960 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1497 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:45:27
-->
